Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80476.t1 | XP_024627646.1 | 78.8 | 184 | 38 | 1 | 1 | 184 | 1 | 183 | 4.60E-80 | 307.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80476.t1 | Q84WU2 | 31.0 | 142 | 87 | 4 | 30 | 171 | 50 | 180 | 5.8e-15 | 82.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80476.t1 | A0A396GIL6 | 78.8 | 184 | 38 | 1 | 1 | 184 | 1 | 183 | 3.3e-80 | 307.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049611 | MS.gene80476 | 0.803843 | 2.87E-49 | -1.69E-46 |
| MS.gene049634 | MS.gene80476 | 0.805821 | 1.11E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene80476 | 0.810062 | 1.39E-50 | -1.69E-46 |
| MS.gene051366 | MS.gene80476 | 0.804679 | 1.92E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene80476 | 0.828808 | 7.32E-55 | -1.69E-46 |
| MS.gene056198 | MS.gene80476 | 0.805219 | 1.48E-49 | -1.69E-46 |
| MS.gene056224 | MS.gene80476 | 0.815139 | 1.08E-51 | -1.69E-46 |
| MS.gene056856 | MS.gene80476 | 0.806317 | 8.72E-50 | -1.69E-46 |
| MS.gene056857 | MS.gene80476 | 0.80635 | 8.58E-50 | -1.69E-46 |
| MS.gene057768 | MS.gene80476 | 0.814084 | 1.84E-51 | -1.69E-46 |
| MS.gene058111 | MS.gene80476 | 0.800454 | 1.43E-48 | -1.69E-46 |
| MS.gene058117 | MS.gene80476 | 0.802142 | 6.46E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene80476 | 0.810296 | 1.24E-50 | -1.69E-46 |
| MS.gene058173 | MS.gene80476 | 0.811263 | 7.64E-51 | -1.69E-46 |
| MS.gene058175 | MS.gene80476 | 0.820896 | 5.38E-53 | -1.69E-46 |
| MS.gene058603 | MS.gene80476 | 0.837683 | 4.50E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80476.t1 | MTR_8g006190 | 75.362 | 138 | 33 | 1 | 47 | 184 | 1 | 137 | 3.78e-70 | 221 |
| MS.gene80476.t1 | MTR_8g006190 | 77.119 | 118 | 26 | 1 | 67 | 184 | 13 | 129 | 3.11e-58 | 190 |
| MS.gene80476.t1 | MTR_4g123750 | 47.651 | 149 | 77 | 1 | 23 | 171 | 7 | 154 | 1.65e-43 | 149 |
| MS.gene80476.t1 | MTR_5g086700 | 32.680 | 153 | 91 | 5 | 30 | 182 | 56 | 196 | 1.24e-18 | 85.1 |
| MS.gene80476.t1 | MTR_5g086700 | 32.680 | 153 | 91 | 5 | 30 | 182 | 56 | 196 | 1.25e-18 | 85.1 |
| MS.gene80476.t1 | MTR_3g079840 | 30.612 | 147 | 91 | 4 | 25 | 171 | 46 | 181 | 3.82e-17 | 80.9 |
| MS.gene80476.t1 | MTR_3g079840 | 30.612 | 147 | 91 | 4 | 25 | 171 | 47 | 182 | 3.93e-17 | 80.5 |
| MS.gene80476.t1 | MTR_1g041240 | 30.201 | 149 | 92 | 4 | 30 | 178 | 54 | 190 | 9.73e-17 | 79.3 |
| MS.gene80476.t1 | MTR_1g041240 | 30.201 | 149 | 92 | 4 | 30 | 178 | 53 | 189 | 1.00e-16 | 79.3 |
| MS.gene80476.t1 | MTR_1g041240 | 30.201 | 149 | 92 | 4 | 30 | 178 | 52 | 188 | 1.05e-16 | 79.3 |
| MS.gene80476.t1 | MTR_5g091450 | 37.143 | 105 | 60 | 2 | 53 | 157 | 48 | 146 | 3.99e-16 | 77.8 |
| MS.gene80476.t1 | MTR_5g091180 | 30.822 | 146 | 89 | 5 | 25 | 169 | 36 | 170 | 9.13e-16 | 76.6 |
| MS.gene80476.t1 | MTR_5g091550 | 35.294 | 102 | 59 | 2 | 56 | 157 | 37 | 131 | 4.27e-13 | 68.6 |
| MS.gene80476.t1 | MTR_5g091550 | 35.294 | 102 | 59 | 2 | 56 | 157 | 37 | 131 | 4.29e-13 | 68.6 |
| MS.gene80476.t1 | MTR_3g106700 | 24.242 | 165 | 113 | 4 | 23 | 181 | 394 | 552 | 1.31e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80476.t1 | AT3G17380 | 47.297 | 148 | 74 | 2 | 24 | 171 | 10 | 153 | 8.85e-38 | 134 |
| MS.gene80476.t1 | AT3G17380 | 28.966 | 145 | 94 | 4 | 29 | 173 | 169 | 304 | 8.93e-12 | 63.9 |
| MS.gene80476.t1 | AT5G26280 | 43.709 | 151 | 81 | 3 | 22 | 172 | 48 | 194 | 2.16e-36 | 131 |
| MS.gene80476.t1 | AT5G26280 | 40.719 | 167 | 95 | 3 | 22 | 188 | 67 | 229 | 3.65e-36 | 131 |
| MS.gene80476.t1 | AT5G26290 | 44.667 | 150 | 79 | 3 | 23 | 172 | 42 | 187 | 5.67e-35 | 127 |
| MS.gene80476.t1 | AT5G26260 | 39.634 | 164 | 95 | 3 | 25 | 188 | 52 | 211 | 1.33e-34 | 127 |
| MS.gene80476.t1 | AT5G26300 | 42.949 | 156 | 84 | 4 | 17 | 172 | 43 | 193 | 1.37e-33 | 124 |
| MS.gene80476.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 3 | 140 | 9.49e-31 | 115 |
| MS.gene80476.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 3 | 140 | 9.49e-31 | 115 |
| MS.gene80476.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 85 | 222 | 4.86e-30 | 115 |
| MS.gene80476.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 125 | 262 | 6.40e-30 | 115 |
| MS.gene80476.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 125 | 262 | 6.40e-30 | 115 |
| MS.gene80476.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 125 | 262 | 7.51e-30 | 114 |
| MS.gene80476.t1 | AT2G04170 | 43.662 | 142 | 76 | 3 | 29 | 170 | 125 | 262 | 1.08e-29 | 113 |
| MS.gene80476.t1 | AT5G26320 | 34.483 | 174 | 108 | 4 | 17 | 188 | 43 | 212 | 4.75e-29 | 112 |
| MS.gene80476.t1 | AT3G20370 | 35.417 | 192 | 114 | 6 | 3 | 191 | 58 | 242 | 2.98e-27 | 107 |
| MS.gene80476.t1 | AT3G20370 | 35.417 | 192 | 114 | 6 | 3 | 191 | 36 | 220 | 3.40e-27 | 107 |
| MS.gene80476.t1 | AT3G20360 | 34.161 | 161 | 103 | 2 | 29 | 188 | 62 | 220 | 5.07e-26 | 104 |
| MS.gene80476.t1 | AT2G15710 | 38.994 | 159 | 89 | 4 | 24 | 180 | 89 | 241 | 7.83e-26 | 103 |
| MS.gene80476.t1 | AT2G04190 | 35.443 | 158 | 97 | 4 | 15 | 171 | 101 | 254 | 4.32e-25 | 102 |
| MS.gene80476.t1 | AT3G22080 | 34.177 | 158 | 98 | 3 | 26 | 179 | 12 | 167 | 7.71e-25 | 100 |
| MS.gene80476.t1 | AT4G09770 | 36.111 | 144 | 85 | 4 | 29 | 172 | 5 | 141 | 1.25e-24 | 98.6 |
| MS.gene80476.t1 | AT4G09770 | 35.570 | 149 | 89 | 4 | 24 | 172 | 26 | 167 | 1.61e-24 | 99.0 |
| MS.gene80476.t1 | AT4G09770 | 36.111 | 144 | 85 | 4 | 29 | 172 | 5 | 141 | 1.94e-24 | 99.0 |
| MS.gene80476.t1 | AT4G09770 | 36.111 | 144 | 85 | 4 | 29 | 172 | 5 | 141 | 1.94e-24 | 99.0 |
| MS.gene80476.t1 | AT4G09770 | 35.570 | 149 | 89 | 4 | 24 | 172 | 26 | 167 | 2.37e-24 | 99.4 |
| MS.gene80476.t1 | AT4G09780 | 34.899 | 149 | 91 | 4 | 24 | 172 | 53 | 195 | 4.29e-23 | 97.1 |
| MS.gene80476.t1 | AT5G26280 | 35.762 | 151 | 70 | 4 | 22 | 172 | 48 | 171 | 4.40e-23 | 95.9 |
| MS.gene80476.t1 | AT4G09780 | 34.899 | 149 | 91 | 4 | 24 | 172 | 53 | 195 | 4.89e-23 | 97.1 |
| MS.gene80476.t1 | AT3G28220 | 32.278 | 158 | 103 | 3 | 29 | 184 | 76 | 231 | 8.31e-23 | 95.9 |
| MS.gene80476.t1 | AT3G20380 | 30.864 | 162 | 109 | 2 | 23 | 184 | 76 | 234 | 2.33e-19 | 86.3 |
| MS.gene80476.t1 | AT3G22085 | 33.553 | 152 | 78 | 4 | 29 | 179 | 14 | 143 | 2.52e-18 | 82.4 |
| MS.gene80476.t1 | AT5G06600 | 28.409 | 176 | 108 | 6 | 1 | 171 | 18 | 180 | 5.11e-17 | 80.5 |
| MS.gene80476.t1 | AT5G06600 | 28.409 | 176 | 108 | 6 | 1 | 171 | 19 | 181 | 5.21e-17 | 80.5 |
| MS.gene80476.t1 | AT5G06600 | 28.409 | 176 | 108 | 6 | 1 | 171 | 19 | 181 | 5.44e-17 | 80.1 |
| MS.gene80476.t1 | AT1G65050 | 35.659 | 129 | 73 | 4 | 29 | 157 | 15 | 133 | 6.67e-17 | 75.9 |
| MS.gene80476.t1 | AT1G65050 | 35.659 | 129 | 73 | 4 | 29 | 157 | 15 | 133 | 6.67e-17 | 75.9 |
| MS.gene80476.t1 | AT1G58270 | 26.506 | 166 | 117 | 2 | 19 | 181 | 80 | 243 | 9.80e-17 | 79.0 |
| MS.gene80476.t1 | AT3G11910 | 33.058 | 121 | 73 | 3 | 51 | 171 | 67 | 179 | 2.45e-16 | 78.6 |
| MS.gene80476.t1 | AT3G11910 | 33.058 | 121 | 73 | 3 | 51 | 171 | 67 | 179 | 2.45e-16 | 78.6 |
| MS.gene80476.t1 | AT3G11910 | 33.058 | 121 | 73 | 3 | 51 | 171 | 68 | 180 | 2.45e-16 | 78.6 |
| MS.gene80476.t1 | AT3G11910 | 33.058 | 121 | 73 | 3 | 51 | 171 | 68 | 180 | 2.45e-16 | 78.6 |
| MS.gene80476.t1 | AT1G04300 | 30.657 | 137 | 82 | 4 | 36 | 172 | 70 | 193 | 1.39e-13 | 70.5 |
| MS.gene80476.t1 | AT1G65150 | 28.000 | 150 | 98 | 3 | 23 | 172 | 9 | 148 | 2.37e-13 | 68.6 |
| MS.gene80476.t1 | AT1G65150 | 28.000 | 150 | 98 | 3 | 23 | 172 | 9 | 148 | 2.37e-13 | 68.6 |
| MS.gene80476.t1 | AT1G04300 | 28.966 | 145 | 82 | 5 | 36 | 172 | 70 | 201 | 1.84e-11 | 63.9 |
| MS.gene80476.t1 | AT1G69660 | 35.294 | 85 | 51 | 2 | 107 | 189 | 14 | 96 | 2.71e-11 | 62.0 |
Find 60 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTGGCCATTCTGGAAAT+TGG | 0.215930 | 6.3:-37824846 | MS.gene80476:CDS |
| GTTCTTGTGATTGGCCATTC+TGG | 0.256792 | 6.3:-37824853 | MS.gene80476:CDS |
| CGGTGGCAAGCCTCAAATAT+TGG | 0.286140 | 6.3:-37824767 | MS.gene80476:CDS |
| TTCGATCGAGCAGAAGAAAA+TGG | 0.350125 | 6.3:-37824552 | MS.gene80476:CDS |
| ATCTGCAATAGTAAGGTATA+AGG | 0.371930 | 6.3:+37825178 | None:intergenic |
| TAATGAAATGAAAACTGAAT+GGG | 0.381095 | 6.3:-37824965 | MS.gene80476:CDS |
| GAAAATGCCGTTGTCTGATC+TGG | 0.401267 | 6.3:-37825886 | None:intergenic |
| AGGCTTGCCACCGCCGGTGG+AGG | 0.409343 | 6.3:+37824777 | None:intergenic |
| ATCTGGAAAGAGTTTGTATC+CGG | 0.415813 | 6.3:-37825869 | MS.gene80476:CDS |
| AAGCGTAAACGTGACTGATA+TGG | 0.415816 | 6.3:+37824591 | None:intergenic |
| GGAGCTGAAGTTCTTGTGAT+TGG | 0.415846 | 6.3:-37824862 | MS.gene80476:CDS |
| GGTGGCAAGCCTCAAATATT+GGG | 0.418440 | 6.3:-37824766 | MS.gene80476:CDS |
| GACAAGCCTCGAACAACATC+TGG | 0.423058 | 6.3:-37824802 | MS.gene80476:CDS |
| TTATATTTGTTGTAGGAAGT+TGG | 0.427408 | 6.3:-37825249 | MS.gene80476:intron |
| GAAGAAGGTACATGCGTGTT+TGG | 0.433121 | 6.3:-37824883 | MS.gene80476:CDS |
| AACAATTATTTGACCATCCA+AGG | 0.454086 | 6.3:-37825086 | MS.gene80476:intron |
| TTCCTTGGCTGTGGACGAAA+AGG | 0.458291 | 6.3:-37825421 | MS.gene80476:CDS |
| AAACAAGCTTTCTCGTGGTT+GGG | 0.458923 | 6.3:-37825153 | MS.gene80476:CDS |
| GATTGGCCATTCTGGAAATT+GGG | 0.467944 | 6.3:-37824845 | MS.gene80476:CDS |
| TGTTTGTATCTGCAATAGTA+AGG | 0.468822 | 6.3:+37825171 | None:intergenic |
| GAACTCTTTGATCCATGTAA+TGG | 0.468879 | 6.3:-37824916 | MS.gene80476:CDS |
| TCTGGCTCCTCCACCGGCGG+TGG | 0.469678 | 6.3:-37824784 | MS.gene80476:CDS |
| AAGTTTCCCAATTTCCAGAA+TGG | 0.481189 | 6.3:+37824839 | None:intergenic |
| TTAATGAAATGAAAACTGAA+TGG | 0.482655 | 6.3:-37824966 | MS.gene80476:CDS |
| CAAACAAGCTTTCTCGTGGT+TGG | 0.484063 | 6.3:-37825154 | MS.gene80476:CDS |
| GAGTCGGAGCCCAATATTTG+AGG | 0.498105 | 6.3:+37824757 | None:intergenic |
| TCATCAACGTATCCATTACA+TGG | 0.498278 | 6.3:+37824904 | None:intergenic |
| GATGATATGTATACCTTGGA+TGG | 0.518799 | 6.3:+37825073 | None:intergenic |
| TTCAAGCTGGTGGATACTCA+TGG | 0.530987 | 6.3:-37825374 | MS.gene80476:intron |
| TTGAGGCTTGCCACCGCCGG+TGG | 0.532648 | 6.3:+37824774 | None:intergenic |
| GAGGAGCCAGATGTTGTTCG+AGG | 0.537973 | 6.3:+37824796 | None:intergenic |
| ATCTTAAACAAGTAATCAGC+TGG | 0.540985 | 6.3:+37825453 | None:intergenic |
| AATGAAATGAAAACTGAATG+GGG | 0.549309 | 6.3:-37824964 | MS.gene80476:CDS |
| TCAAGTGCTCGTTGTGGTGT+TGG | 0.553226 | 6.3:-37825837 | MS.gene80476:intron |
| GAAAATGGATGGATTAAAGA+CGG | 0.553351 | 6.3:-37824537 | MS.gene80476:CDS |
| CCACAGCCAAGGAAAACGAT+TGG | 0.561150 | 6.3:+37825430 | None:intergenic |
| ACAACATCTGGCTCCTCCAC+CGG | 0.561761 | 6.3:-37824790 | MS.gene80476:CDS |
| ATCGAGCAGAAGAAAATGGA+TGG | 0.566913 | 6.3:-37824548 | MS.gene80476:CDS |
| CAAGCTTTCTCGTGGTTGGG+AGG | 0.572497 | 6.3:-37825150 | MS.gene80476:CDS |
| TATTTGAGGCTTGCCACCGC+CGG | 0.573001 | 6.3:+37824771 | None:intergenic |
| GAGCACTTGAGGTTGGCTCC+CGG | 0.579399 | 6.3:+37825850 | None:intergenic |
| AAGTTGGTACTCTACCCAAA+TGG | 0.581141 | 6.3:-37825233 | MS.gene80476:CDS |
| TGTTGTTCGAGGCTTGTCAC+CGG | 0.581750 | 6.3:+37824807 | None:intergenic |
| GTTGCCACCGCCATCAGAGT+CGG | 0.586811 | 6.3:+37824741 | None:intergenic |
| AATGGATACGTTGATGAAGA+AGG | 0.590591 | 6.3:-37824898 | MS.gene80476:CDS |
| CCACAACGAGCACTTGAGGT+TGG | 0.599713 | 6.3:+37825843 | None:intergenic |
| ACATCTGGCTCCTCCACCGG+CGG | 0.606029 | 6.3:-37824787 | MS.gene80476:CDS |
| TTGATTACTGTAGATGCTGA+TGG | 0.622750 | 6.3:-37825003 | MS.gene80476:intron |
| TAGTAAGGTATAAGGAAACA+TGG | 0.628324 | 6.3:+37825186 | None:intergenic |
| TACTGTAGATGCTGATGGCG+TGG | 0.640979 | 6.3:-37824998 | MS.gene80476:intron |
| TTGGGCTCCGACTCTGATGG+CGG | 0.641362 | 6.3:-37824748 | MS.gene80476:intron |
| ATATTGGGCTCCGACTCTGA+TGG | 0.641420 | 6.3:-37824751 | MS.gene80476:CDS |
| AACACCACAACGAGCACTTG+AGG | 0.648489 | 6.3:+37825839 | None:intergenic |
| TTAAACAAGTAATCAGCTGG+TGG | 0.648634 | 6.3:+37825456 | None:intergenic |
| TCTGGAAAGAGTTTGTATCC+GGG | 0.648666 | 6.3:-37825868 | MS.gene80476:CDS |
| GATACAAACAAGCTTTCTCG+TGG | 0.650785 | 6.3:-37825158 | MS.gene80476:CDS |
| AATGGTAAATCAAAACGAAG+TGG | 0.657504 | 6.3:-37825215 | MS.gene80476:CDS |
| CCAACCTCAAGTGCTCGTTG+TGG | 0.696181 | 6.3:-37825843 | MS.gene80476:CDS |
| TCTGCTCGATCGAATATATG+CGG | 0.705289 | 6.3:+37824561 | None:intergenic |
| ACTCTTTCCAGATCAGACAA+CGG | 0.731328 | 6.3:+37825879 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTATAAAAAAGCATAA+TGG | + | chr6.3:37824707-37824726 | None:intergenic | 15.0% |
| !!! | TTTTTAAGTTGTATATTTGT+CGG | + | chr6.3:37825695-37825714 | None:intergenic | 15.0% |
| !! | ACAGAAAAAATATACAACTT+AGG | + | chr6.3:37825764-37825783 | None:intergenic | 20.0% |
| !! | TAATGAAATGAAAACTGAAT+GGG | - | chr6.3:37825446-37825465 | MS.gene80476:CDS | 20.0% |
| !! | TTAATGAAATGAAAACTGAA+TGG | - | chr6.3:37825445-37825464 | MS.gene80476:CDS | 20.0% |
| !!! | ATGCTTTTTTATAAGAAACA+TGG | - | chr6.3:37824709-37824728 | MS.gene80476:intron | 20.0% |
| !!! | TTTTGAGCAATTAATTTCAT+TGG | - | chr6.3:37825470-37825489 | MS.gene80476:CDS | 20.0% |
| ! | AATGAAATGAAAACTGAATG+GGG | - | chr6.3:37825447-37825466 | MS.gene80476:CDS | 25.0% |
| ! | TGAAATACCTGAGTTTATAT+AGG | + | chr6.3:37824917-37824936 | None:intergenic | 25.0% |
| !!! | GTTGTTGTTATATTTGTTGT+AGG | - | chr6.3:37825155-37825174 | MS.gene80476:CDS | 25.0% |
| !!! | TTATATTTGTTGTAGGAAGT+TGG | - | chr6.3:37825162-37825181 | MS.gene80476:CDS | 25.0% |
| !!! | TTCGTTTTGATTTACCATTT+GGG | + | chr6.3:37825195-37825214 | None:intergenic | 25.0% |
| AACAATTATTTGACCATCCA+AGG | - | chr6.3:37825325-37825344 | MS.gene80476:intron | 30.0% | |
| AACCATAAGGTTGTAACAAT+GGG | - | chr6.3:37824759-37824778 | MS.gene80476:CDS | 30.0% | |
| AATGGTAAATCAAAACGAAG+TGG | - | chr6.3:37825196-37825215 | MS.gene80476:CDS | 30.0% | |
| AGTAGATGATATGTATACCT+TGG | + | chr6.3:37825345-37825364 | None:intergenic | 30.0% | |
| ATCTGCAATAGTAAGGTATA+AGG | + | chr6.3:37825236-37825255 | None:intergenic | 30.0% | |
| ATCTTAAACAAGTAATCAGC+TGG | + | chr6.3:37824961-37824980 | None:intergenic | 30.0% | |
| TAGTAAGGTATAAGGAAACA+TGG | + | chr6.3:37825228-37825247 | None:intergenic | 30.0% | |
| TCATCTACCTATATAAACTC+AGG | - | chr6.3:37824907-37824926 | MS.gene80476:CDS | 30.0% | |
| TGTTTGTATCTGCAATAGTA+AGG | + | chr6.3:37825243-37825262 | None:intergenic | 30.0% | |
| !! | GAAAATGGATGGATTAAAGA+CGG | - | chr6.3:37825874-37825893 | MS.gene80476:CDS | 30.0% |
| !!! | CTTCGTTTTGATTTACCATT+TGG | + | chr6.3:37825196-37825215 | None:intergenic | 30.0% |
| AAGTTTCCCAATTTCCAGAA+TGG | + | chr6.3:37825575-37825594 | None:intergenic | 35.0% | |
| ATCTGGAAAGAGTTTGTATC+CGG | - | chr6.3:37824542-37824561 | MS.gene80476:CDS | 35.0% | |
| CAACCATAAGGTTGTAACAA+TGG | - | chr6.3:37824758-37824777 | MS.gene80476:CDS | 35.0% | |
| CATTGTTACAACCTTATGGT+TGG | + | chr6.3:37824760-37824779 | None:intergenic | 35.0% | |
| CTTACATGTTTCCTTTCGTT+CGG | - | chr6.3:37825079-37825098 | MS.gene80476:intron | 35.0% | |
| GAACGAAAGGAAACATGTAA+GGG | + | chr6.3:37825080-37825099 | None:intergenic | 35.0% | |
| GAACTCTTTGATCCATGTAA+TGG | - | chr6.3:37825495-37825514 | MS.gene80476:intron | 35.0% | |
| GATGATATGTATACCTTGGA+TGG | + | chr6.3:37825341-37825360 | None:intergenic | 35.0% | |
| TATCCTAACAACCAACCATA+AGG | - | chr6.3:37824746-37824765 | MS.gene80476:intron | 35.0% | |
| TCATCAACGTATCCATTACA+TGG | + | chr6.3:37825510-37825529 | None:intergenic | 35.0% | |
| TTAAACAAGTAATCAGCTGG+TGG | + | chr6.3:37824958-37824977 | None:intergenic | 35.0% | |
| TTGATTACTGTAGATGCTGA+TGG | - | chr6.3:37825408-37825427 | MS.gene80476:CDS | 35.0% | |
| ! | AATGGATACGTTGATGAAGA+AGG | - | chr6.3:37825513-37825532 | MS.gene80476:intron | 35.0% |
| ! | GGTTGTTAGGATATTTTGTG+TGG | + | chr6.3:37824739-37824758 | None:intergenic | 35.0% |
| ! | TAAGATCCAATCGTTTTCCT+TGG | - | chr6.3:37824975-37824994 | MS.gene80476:CDS | 35.0% |
| !!! | GAGTCAAATGTTTTTCAAGC+TGG | - | chr6.3:37825024-37825043 | MS.gene80476:intron | 35.0% |
| !!! | TCAAATGTTTTTCAAGCTGG+TGG | - | chr6.3:37825027-37825046 | MS.gene80476:intron | 35.0% |
| AAACAAGCTTTCTCGTGGTT+GGG | - | chr6.3:37825258-37825277 | MS.gene80476:intron | 40.0% | |
| AAGCGTAAACGTGACTGATA+TGG | + | chr6.3:37825823-37825842 | None:intergenic | 40.0% | |
| ACTCTTTCCAGATCAGACAA+CGG | + | chr6.3:37824535-37824554 | None:intergenic | 40.0% | |
| ATCGAGCAGAAGAAAATGGA+TGG | - | chr6.3:37825863-37825882 | MS.gene80476:CDS | 40.0% | |
| CACCCATTGTTACAACCTTA+TGG | + | chr6.3:37824764-37824783 | None:intergenic | 40.0% | |
| CGAACGAAAGGAAACATGTA+AGG | + | chr6.3:37825081-37825100 | None:intergenic | 40.0% | |
| GATACAAACAAGCTTTCTCG+TGG | - | chr6.3:37825253-37825272 | MS.gene80476:intron | 40.0% | |
| TCGGTCAATGTTTGGAAAGT+AGG | - | chr6.3:37825098-37825117 | MS.gene80476:CDS | 40.0% | |
| TCTGCTCGATCGAATATATG+CGG | + | chr6.3:37825853-37825872 | None:intergenic | 40.0% | |
| TCTGGAAAGAGTTTGTATCC+GGG | - | chr6.3:37824543-37824562 | MS.gene80476:CDS | 40.0% | |
| TTCGATCGAGCAGAAGAAAA+TGG | - | chr6.3:37825859-37825878 | MS.gene80476:CDS | 40.0% | |
| ! | CAACCTTATGGTTGGTTGTT+AGG | + | chr6.3:37824752-37824771 | None:intergenic | 40.0% |
| ! | GATTGGCCATTCTGGAAATT+GGG | - | chr6.3:37825566-37825585 | MS.gene80476:intron | 40.0% |
| ! | TGATTGGCCATTCTGGAAAT+TGG | - | chr6.3:37825565-37825584 | MS.gene80476:intron | 40.0% |
| ! | TGGGAAACTTTTGATGTGTC+CGG | - | chr6.3:37825585-37825604 | MS.gene80476:intron | 40.0% |
| !! | AAGTTGGTACTCTACCCAAA+TGG | - | chr6.3:37825178-37825197 | MS.gene80476:CDS | 40.0% |
| CAAACAAGCTTTCTCGTGGT+TGG | - | chr6.3:37825257-37825276 | MS.gene80476:intron | 45.0% | |
| CCAAACATTGACCGAACGAA+AGG | + | chr6.3:37825093-37825112 | None:intergenic | 45.0% | |
| CCTTTCGTTCGGTCAATGTT+TGG | - | chr6.3:37825090-37825109 | MS.gene80476:CDS | 45.0% | |
| GGAGCTGAAGTTCTTGTGAT+TGG | - | chr6.3:37825549-37825568 | MS.gene80476:intron | 45.0% | |
| GGTGGCAAGCCTCAAATATT+GGG | - | chr6.3:37825645-37825664 | MS.gene80476:intron | 45.0% | |
| ! | GAAGAAGGTACATGCGTGTT+TGG | - | chr6.3:37825528-37825547 | MS.gene80476:intron | 45.0% |
| ! | GTTCTTGTGATTGGCCATTC+TGG | - | chr6.3:37825558-37825577 | MS.gene80476:intron | 45.0% |
| ! | TTCAAGCTGGTGGATACTCA+TGG | - | chr6.3:37825037-37825056 | MS.gene80476:intron | 45.0% |
| AACACCACAACGAGCACTTG+AGG | + | chr6.3:37824575-37824594 | None:intergenic | 50.0% | |
| ATATTGGGCTCCGACTCTGA+TGG | - | chr6.3:37825660-37825679 | MS.gene80476:intron | 50.0% | |
| CCACAGCCAAGGAAAACGAT+TGG | + | chr6.3:37824984-37825003 | None:intergenic | 50.0% | |
| CGGTGGCAAGCCTCAAATAT+TGG | - | chr6.3:37825644-37825663 | MS.gene80476:intron | 50.0% | |
| GACAAGCCTCGAACAACATC+TGG | - | chr6.3:37825609-37825628 | MS.gene80476:intron | 50.0% | |
| GAGTCGGAGCCCAATATTTG+AGG | + | chr6.3:37825657-37825676 | None:intergenic | 50.0% | |
| TCAAGTGCTCGTTGTGGTGT+TGG | - | chr6.3:37824574-37824593 | MS.gene80476:CDS | 50.0% | |
| TGTTGTTCGAGGCTTGTCAC+CGG | + | chr6.3:37825607-37825626 | None:intergenic | 50.0% | |
| TTCCTTGGCTGTGGACGAAA+AGG | - | chr6.3:37824990-37825009 | MS.gene80476:CDS | 50.0% | |
| ! | CCAATCGTTTTCCTTGGCTG+TGG | - | chr6.3:37824981-37825000 | MS.gene80476:CDS | 50.0% |
| ! | TACTGTAGATGCTGATGGCG+TGG | - | chr6.3:37825413-37825432 | MS.gene80476:CDS | 50.0% |
| CAAGCTTTCTCGTGGTTGGG+AGG | - | chr6.3:37825261-37825280 | MS.gene80476:intron | 55.0% | |
| CACATCGCGACTAAGCGAGA+GGG | + | chr6.3:37825800-37825819 | None:intergenic | 55.0% | |
| CCAACCTCAAGTGCTCGTTG+TGG | - | chr6.3:37824568-37824587 | MS.gene80476:CDS | 55.0% | |
| CCACAACGAGCACTTGAGGT+TGG | + | chr6.3:37824571-37824590 | None:intergenic | 55.0% | |
| GAGGAGCCAGATGTTGTTCG+AGG | + | chr6.3:37825618-37825637 | None:intergenic | 55.0% | |
| ! | ACAACATCTGGCTCCTCCAC+CGG | - | chr6.3:37825621-37825640 | MS.gene80476:intron | 55.0% |
| ! | CACCTTTTCGTCCACAGCCA+AGG | + | chr6.3:37824995-37825014 | None:intergenic | 55.0% |
| ! | TATTTGAGGCTTGCCACCGC+CGG | + | chr6.3:37825643-37825662 | None:intergenic | 55.0% |
| GCACATCGCGACTAAGCGAG+AGG | + | chr6.3:37825801-37825820 | None:intergenic | 60.0% | |
| GTTGCCACCGCCATCAGAGT+CGG | + | chr6.3:37825673-37825692 | None:intergenic | 60.0% | |
| TTGGGCTCCGACTCTGATGG+CGG | - | chr6.3:37825663-37825682 | MS.gene80476:intron | 60.0% | |
| ! | GAGCACTTGAGGTTGGCTCC+CGG | + | chr6.3:37824564-37824583 | None:intergenic | 60.0% |
| ! | ACATCTGGCTCCTCCACCGG+CGG | - | chr6.3:37825624-37825643 | MS.gene80476:intron | 65.0% |
| TTGAGGCTTGCCACCGCCGG+TGG | + | chr6.3:37825640-37825659 | None:intergenic | 70.0% | |
| !! | GGCTCCGACTCTGATGGCGG+TGG | - | chr6.3:37825666-37825685 | MS.gene80476:intron | 70.0% |
| AGGCTTGCCACCGCCGGTGG+AGG | + | chr6.3:37825637-37825656 | None:intergenic | 75.0% | |
| ! | TCTGGCTCCTCCACCGGCGG+TGG | - | chr6.3:37825627-37825646 | MS.gene80476:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 37824529 | 37825904 | 37824529 | ID=MS.gene80476 |
| chr6.3 | mRNA | 37824529 | 37825904 | 37824529 | ID=MS.gene80476.t1;Parent=MS.gene80476 |
| chr6.3 | exon | 37825838 | 37825904 | 37825838 | ID=MS.gene80476.t1.exon1;Parent=MS.gene80476.t1 |
| chr6.3 | CDS | 37825838 | 37825904 | 37825838 | ID=cds.MS.gene80476.t1;Parent=MS.gene80476.t1 |
| chr6.3 | exon | 37825375 | 37825504 | 37825375 | ID=MS.gene80476.t1.exon2;Parent=MS.gene80476.t1 |
| chr6.3 | CDS | 37825375 | 37825504 | 37825375 | ID=cds.MS.gene80476.t1;Parent=MS.gene80476.t1 |
| chr6.3 | exon | 37825087 | 37825256 | 37825087 | ID=MS.gene80476.t1.exon3;Parent=MS.gene80476.t1 |
| chr6.3 | CDS | 37825087 | 37825256 | 37825087 | ID=cds.MS.gene80476.t1;Parent=MS.gene80476.t1 |
| chr6.3 | exon | 37824749 | 37825012 | 37824749 | ID=MS.gene80476.t1.exon4;Parent=MS.gene80476.t1 |
| chr6.3 | CDS | 37824749 | 37825012 | 37824749 | ID=cds.MS.gene80476.t1;Parent=MS.gene80476.t1 |
| chr6.3 | exon | 37824529 | 37824623 | 37824529 | ID=MS.gene80476.t1.exon5;Parent=MS.gene80476.t1 |
| chr6.3 | CDS | 37824529 | 37824623 | 37824529 | ID=cds.MS.gene80476.t1;Parent=MS.gene80476.t1 |
| Gene Sequence |
| Protein sequence |
