Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80886.t1 | XP_003618770.1 | 96.6 | 444 | 15 | 0 | 1 | 444 | 1 | 444 | 5.10E-218 | 766.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80886.t1 | Q8VYR5 | 51.6 | 442 | 207 | 3 | 1 | 441 | 1 | 436 | 2.1e-108 | 394.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80886.t1 | G7KN56 | 96.6 | 444 | 15 | 0 | 1 | 444 | 1 | 444 | 3.7e-218 | 766.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049824 | MS.gene80886 | 0.864136 | 1.51E-64 | -1.69E-46 |
MS.gene049825 | MS.gene80886 | 0.817651 | 2.95E-52 | -1.69E-46 |
MS.gene050427 | MS.gene80886 | 0.819195 | 1.32E-52 | -1.69E-46 |
MS.gene050916 | MS.gene80886 | 0.807913 | 4.01E-50 | -1.69E-46 |
MS.gene051791 | MS.gene80886 | 0.804651 | 1.95E-49 | -1.69E-46 |
MS.gene055808 | MS.gene80886 | 0.84982 | 2.53E-60 | -1.69E-46 |
MS.gene056091 | MS.gene80886 | 0.80742 | 5.10E-50 | -1.69E-46 |
MS.gene05954 | MS.gene80886 | 0.804346 | 2.26E-49 | -1.69E-46 |
MS.gene06001 | MS.gene80886 | 0.835016 | 2.14E-56 | -1.69E-46 |
MS.gene060194 | MS.gene80886 | 0.80681 | 6.87E-50 | -1.69E-46 |
MS.gene060429 | MS.gene80886 | 0.81691 | 4.33E-52 | -1.69E-46 |
MS.gene060587 | MS.gene80886 | 0.806896 | 6.58E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene80886 | MS.gene42101 | PPI |
MS.gene80886 | MS.gene87037 | PPI |
MS.gene80886 | MS.gene87771 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80886.t1 | MTR_6g021740 | 96.396 | 444 | 16 | 0 | 1 | 444 | 1 | 444 | 0.0 | 896 |
MS.gene80886.t1 | MTR_2g437460 | 30.000 | 150 | 105 | 0 | 43 | 192 | 202 | 351 | 3.54e-16 | 81.6 |
MS.gene80886.t1 | MTR_0237s0070 | 23.889 | 360 | 250 | 13 | 33 | 383 | 317 | 661 | 1.80e-14 | 76.3 |
MS.gene80886.t1 | MTR_1g033960 | 24.540 | 326 | 196 | 9 | 44 | 366 | 263 | 541 | 3.33e-14 | 75.5 |
MS.gene80886.t1 | MTR_1g033960 | 20.091 | 438 | 289 | 12 | 38 | 430 | 147 | 568 | 8.08e-12 | 67.8 |
MS.gene80886.t1 | MTR_6g079830 | 20.672 | 387 | 290 | 8 | 44 | 428 | 224 | 595 | 5.54e-14 | 74.7 |
MS.gene80886.t1 | MTR_6g079180 | 22.189 | 338 | 246 | 8 | 38 | 369 | 31 | 357 | 7.27e-14 | 73.2 |
MS.gene80886.t1 | MTR_3g105900 | 26.174 | 149 | 110 | 0 | 48 | 196 | 939 | 1087 | 1.08e-13 | 73.9 |
MS.gene80886.t1 | MTR_3g105900 | 23.372 | 261 | 180 | 4 | 67 | 320 | 222 | 469 | 1.88e-11 | 67.0 |
MS.gene80886.t1 | MTR_4g075270 | 22.546 | 377 | 245 | 10 | 67 | 408 | 485 | 849 | 1.26e-13 | 73.6 |
MS.gene80886.t1 | MTR_6g079210 | 21.662 | 337 | 249 | 7 | 38 | 369 | 31 | 357 | 1.97e-13 | 72.0 |
MS.gene80886.t1 | MTR_2g026645 | 26.275 | 255 | 174 | 7 | 44 | 294 | 286 | 530 | 2.03e-13 | 72.8 |
MS.gene80886.t1 | MTR_8g105170 | 26.829 | 164 | 116 | 2 | 34 | 195 | 371 | 532 | 3.26e-13 | 72.4 |
MS.gene80886.t1 | MTR_4g074390 | 22.086 | 326 | 218 | 6 | 17 | 326 | 243 | 548 | 4.96e-13 | 71.2 |
MS.gene80886.t1 | MTR_1g068960 | 28.571 | 161 | 115 | 0 | 34 | 194 | 436 | 596 | 5.74e-13 | 71.2 |
MS.gene80886.t1 | MTR_5g095130 | 24.521 | 261 | 175 | 4 | 44 | 304 | 621 | 859 | 6.71e-13 | 71.2 |
MS.gene80886.t1 | MTR_6g079920 | 21.345 | 342 | 255 | 6 | 44 | 383 | 224 | 553 | 7.59e-13 | 70.9 |
MS.gene80886.t1 | MTR_3g088950 | 23.810 | 168 | 124 | 1 | 25 | 192 | 236 | 399 | 1.48e-12 | 70.1 |
MS.gene80886.t1 | MTR_6g079310 | 23.611 | 360 | 251 | 13 | 33 | 383 | 138 | 482 | 1.69e-12 | 69.7 |
MS.gene80886.t1 | MTR_6g078160 | 21.739 | 345 | 250 | 8 | 44 | 383 | 195 | 524 | 1.75e-12 | 69.7 |
MS.gene80886.t1 | MTR_6g069180 | 24.128 | 344 | 243 | 11 | 44 | 383 | 200 | 529 | 1.81e-12 | 69.7 |
MS.gene80886.t1 | MTR_1g095880 | 24.242 | 264 | 188 | 7 | 66 | 326 | 302 | 556 | 1.99e-12 | 69.7 |
MS.gene80886.t1 | MTR_6g079240 | 23.611 | 360 | 251 | 13 | 33 | 383 | 26 | 370 | 2.05e-12 | 69.3 |
MS.gene80886.t1 | MTR_4g108060 | 21.779 | 326 | 219 | 6 | 17 | 326 | 109 | 414 | 3.54e-12 | 68.6 |
MS.gene80886.t1 | MTR_4g108060 | 21.779 | 326 | 219 | 6 | 17 | 326 | 243 | 548 | 4.94e-12 | 68.2 |
MS.gene80886.t1 | MTR_8g098755 | 28.859 | 149 | 106 | 0 | 44 | 192 | 314 | 462 | 6.81e-12 | 68.2 |
MS.gene80886.t1 | MTR_0014s0250 | 25.161 | 155 | 116 | 0 | 38 | 192 | 331 | 485 | 6.84e-12 | 67.8 |
MS.gene80886.t1 | MTR_1g035250 | 27.976 | 168 | 121 | 0 | 39 | 206 | 273 | 440 | 7.31e-12 | 67.8 |
MS.gene80886.t1 | MTR_4g094688 | 26.554 | 177 | 128 | 1 | 34 | 210 | 311 | 485 | 7.70e-12 | 68.2 |
MS.gene80886.t1 | MTR_7g017570 | 27.326 | 172 | 125 | 0 | 35 | 206 | 344 | 515 | 8.28e-12 | 67.8 |
MS.gene80886.t1 | MTR_8g107050 | 23.649 | 296 | 213 | 5 | 44 | 336 | 404 | 689 | 1.33e-11 | 67.0 |
MS.gene80886.t1 | MTR_3g053350 | 22.896 | 297 | 205 | 6 | 34 | 321 | 476 | 757 | 1.45e-11 | 67.0 |
MS.gene80886.t1 | MTR_3g053350 | 28.571 | 126 | 90 | 0 | 67 | 192 | 299 | 424 | 4.99e-11 | 65.5 |
MS.gene80886.t1 | MTR_6g079250 | 25.153 | 163 | 122 | 0 | 39 | 201 | 176 | 338 | 1.52e-11 | 66.2 |
MS.gene80886.t1 | MTR_6g079250 | 22.093 | 344 | 249 | 8 | 33 | 369 | 26 | 357 | 4.54e-11 | 64.7 |
MS.gene80886.t1 | MTR_6g077540 | 23.030 | 165 | 127 | 0 | 37 | 201 | 356 | 520 | 1.54e-11 | 66.6 |
MS.gene80886.t1 | MTR_5g096480 | 32.558 | 129 | 80 | 2 | 71 | 195 | 1 | 126 | 1.62e-11 | 62.8 |
MS.gene80886.t1 | MTR_1g086500 | 27.703 | 148 | 98 | 3 | 39 | 181 | 154 | 297 | 1.91e-11 | 66.2 |
MS.gene80886.t1 | MTR_8g107050 | 23.875 | 289 | 207 | 5 | 44 | 329 | 404 | 682 | 2.18e-11 | 66.2 |
MS.gene80886.t1 | MTR_7g017530 | 26.744 | 172 | 126 | 0 | 35 | 206 | 309 | 480 | 2.21e-11 | 66.6 |
MS.gene80886.t1 | MTR_0177s0060 | 25.610 | 164 | 111 | 3 | 38 | 191 | 303 | 465 | 2.38e-11 | 65.9 |
MS.gene80886.t1 | MTR_4g133740 | 25.581 | 172 | 126 | 2 | 34 | 204 | 310 | 480 | 2.55e-11 | 66.2 |
MS.gene80886.t1 | MTR_0308s0020 | 25.161 | 155 | 116 | 0 | 38 | 192 | 327 | 481 | 3.11e-11 | 65.9 |
MS.gene80886.t1 | MTR_3g034990 | 23.810 | 147 | 112 | 0 | 42 | 188 | 345 | 491 | 3.88e-11 | 65.5 |
MS.gene80886.t1 | MTR_2g026635 | 28.169 | 142 | 101 | 1 | 44 | 184 | 288 | 429 | 3.91e-11 | 65.5 |
MS.gene80886.t1 | MTR_7g067460 | 24.275 | 276 | 160 | 9 | 48 | 319 | 167 | 397 | 4.01e-11 | 65.5 |
MS.gene80886.t1 | MTR_7g067460 | 24.150 | 294 | 196 | 8 | 83 | 367 | 132 | 407 | 4.26e-11 | 65.5 |
MS.gene80886.t1 | MTR_6g080200 | 26.923 | 156 | 110 | 2 | 39 | 192 | 314 | 467 | 4.11e-11 | 65.5 |
MS.gene80886.t1 | MTR_5g090210 | 21.039 | 385 | 287 | 7 | 34 | 415 | 227 | 597 | 4.31e-11 | 65.5 |
MS.gene80886.t1 | MTR_8g071970 | 21.036 | 309 | 228 | 5 | 37 | 340 | 483 | 780 | 5.05e-11 | 65.5 |
MS.gene80886.t1 | MTR_6g069300 | 24.540 | 163 | 114 | 1 | 38 | 191 | 337 | 499 | 5.66e-11 | 65.1 |
MS.gene80886.t1 | MTR_5g042370 | 26.752 | 157 | 115 | 0 | 35 | 191 | 261 | 417 | 6.10e-11 | 65.1 |
MS.gene80886.t1 | MTR_6g078190 | 26.282 | 156 | 115 | 0 | 39 | 194 | 171 | 326 | 6.12e-11 | 64.7 |
MS.gene80886.t1 | MTR_5g045490 | 26.087 | 161 | 118 | 1 | 35 | 194 | 344 | 504 | 6.33e-11 | 65.1 |
MS.gene80886.t1 | MTR_7g012890 | 23.718 | 156 | 119 | 0 | 37 | 192 | 331 | 486 | 6.72e-11 | 64.7 |
MS.gene80886.t1 | MTR_1g040725 | 26.752 | 157 | 115 | 0 | 35 | 191 | 841 | 997 | 7.48e-11 | 65.1 |
MS.gene80886.t1 | MTR_3g114700 | 29.530 | 149 | 105 | 0 | 44 | 192 | 281 | 429 | 7.85e-11 | 64.3 |
MS.gene80886.t1 | MTR_7g090340 | 26.974 | 152 | 110 | 1 | 44 | 194 | 254 | 405 | 7.95e-11 | 64.3 |
MS.gene80886.t1 | MTR_2g036560 | 31.333 | 150 | 101 | 2 | 44 | 192 | 447 | 595 | 8.50e-11 | 64.7 |
MS.gene80886.t1 | MTR_2g030540 | 25.521 | 192 | 130 | 1 | 1 | 192 | 399 | 577 | 9.00e-11 | 64.3 |
MS.gene80886.t1 | MTR_0573s0020 | 24.051 | 158 | 120 | 0 | 44 | 201 | 60 | 217 | 9.10e-11 | 62.8 |
MS.gene80886.t1 | MTR_1g031720 | 26.562 | 128 | 94 | 0 | 65 | 192 | 437 | 564 | 9.16e-11 | 64.7 |
MS.gene80886.t1 | MTR_6g079440 | 24.691 | 162 | 113 | 1 | 39 | 191 | 328 | 489 | 9.19e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80886.t1 | AT4G35850 | 56.787 | 442 | 184 | 3 | 1 | 441 | 1 | 436 | 0.0 | 540 |
MS.gene80886.t1 | AT5G61990 | 24.194 | 310 | 221 | 4 | 35 | 340 | 407 | 706 | 1.75e-17 | 85.9 |
MS.gene80886.t1 | AT5G16640 | 23.039 | 408 | 284 | 10 | 20 | 416 | 88 | 476 | 6.95e-14 | 73.9 |
MS.gene80886.t1 | AT2G02150 | 24.342 | 304 | 208 | 5 | 45 | 340 | 262 | 551 | 2.96e-13 | 72.4 |
MS.gene80886.t1 | AT2G02150 | 24.342 | 304 | 208 | 5 | 45 | 340 | 262 | 551 | 2.96e-13 | 72.4 |
MS.gene80886.t1 | AT3G49730 | 24.020 | 204 | 142 | 3 | 16 | 218 | 214 | 405 | 4.61e-13 | 71.6 |
MS.gene80886.t1 | AT2G37230 | 26.000 | 150 | 111 | 0 | 43 | 192 | 218 | 367 | 5.15e-13 | 71.6 |
MS.gene80886.t1 | AT5G64320 | 25.574 | 305 | 205 | 7 | 30 | 326 | 304 | 594 | 6.41e-13 | 71.2 |
MS.gene80886.t1 | AT1G09820 | 21.898 | 411 | 273 | 11 | 34 | 424 | 212 | 594 | 6.56e-13 | 71.2 |
MS.gene80886.t1 | AT2G17140 | 23.978 | 367 | 248 | 9 | 44 | 406 | 325 | 664 | 7.70e-13 | 71.2 |
MS.gene80886.t1 | AT2G17140 | 23.978 | 367 | 248 | 9 | 44 | 406 | 325 | 664 | 7.70e-13 | 71.2 |
MS.gene80886.t1 | AT2G16880 | 26.241 | 141 | 104 | 0 | 48 | 188 | 243 | 383 | 9.70e-13 | 70.9 |
MS.gene80886.t1 | AT1G64583 | 23.438 | 320 | 228 | 7 | 4 | 319 | 68 | 374 | 1.52e-12 | 69.7 |
MS.gene80886.t1 | AT1G09900 | 24.342 | 304 | 192 | 10 | 37 | 324 | 196 | 477 | 1.54e-12 | 70.1 |
MS.gene80886.t1 | AT5G39710 | 21.231 | 325 | 209 | 5 | 16 | 340 | 287 | 564 | 1.92e-12 | 69.7 |
MS.gene80886.t1 | AT5G39710 | 20.958 | 334 | 226 | 6 | 41 | 340 | 165 | 494 | 2.41e-11 | 66.2 |
MS.gene80886.t1 | AT5G01110 | 19.410 | 407 | 292 | 7 | 39 | 415 | 194 | 594 | 2.18e-12 | 69.7 |
MS.gene80886.t1 | AT5G01110 | 19.410 | 407 | 292 | 7 | 39 | 415 | 222 | 622 | 2.18e-12 | 69.7 |
MS.gene80886.t1 | AT1G64583 | 23.292 | 322 | 230 | 7 | 2 | 319 | 41 | 349 | 2.25e-12 | 69.3 |
MS.gene80886.t1 | AT4G16390 | 27.500 | 160 | 115 | 1 | 34 | 192 | 304 | 463 | 3.14e-12 | 69.3 |
MS.gene80886.t1 | AT1G63400 | 21.851 | 389 | 283 | 7 | 33 | 416 | 108 | 480 | 3.60e-12 | 68.9 |
MS.gene80886.t1 | AT4G19440 | 27.703 | 148 | 101 | 2 | 48 | 192 | 556 | 700 | 5.70e-12 | 68.6 |
MS.gene80886.t1 | AT4G19440 | 27.703 | 148 | 101 | 2 | 48 | 192 | 556 | 700 | 5.70e-12 | 68.6 |
MS.gene80886.t1 | AT4G19440 | 27.703 | 148 | 101 | 2 | 48 | 192 | 556 | 700 | 5.70e-12 | 68.6 |
MS.gene80886.t1 | AT4G19440 | 27.703 | 148 | 101 | 2 | 48 | 192 | 556 | 700 | 5.70e-12 | 68.6 |
MS.gene80886.t1 | AT1G62720 | 21.562 | 320 | 207 | 4 | 44 | 363 | 103 | 378 | 6.61e-12 | 67.8 |
MS.gene80886.t1 | AT1G06580 | 22.807 | 285 | 214 | 3 | 42 | 326 | 5 | 283 | 7.45e-12 | 67.4 |
MS.gene80886.t1 | AT1G06580 | 23.824 | 319 | 229 | 8 | 27 | 340 | 58 | 367 | 9.82e-11 | 63.9 |
MS.gene80886.t1 | AT1G06580 | 22.807 | 285 | 214 | 3 | 42 | 326 | 5 | 283 | 7.45e-12 | 67.4 |
MS.gene80886.t1 | AT1G06580 | 23.824 | 319 | 229 | 8 | 27 | 340 | 58 | 367 | 9.82e-11 | 63.9 |
MS.gene80886.t1 | AT1G06580 | 22.807 | 285 | 214 | 3 | 42 | 326 | 111 | 389 | 9.88e-12 | 67.4 |
MS.gene80886.t1 | AT5G46680 | 24.615 | 260 | 179 | 8 | 44 | 297 | 82 | 330 | 1.40e-11 | 66.6 |
MS.gene80886.t1 | AT1G62680 | 22.491 | 289 | 198 | 7 | 48 | 325 | 123 | 396 | 1.71e-11 | 66.6 |
MS.gene80886.t1 | AT1G62680 | 22.491 | 289 | 198 | 7 | 48 | 325 | 123 | 396 | 1.71e-11 | 66.6 |
MS.gene80886.t1 | AT1G05670 | 26.087 | 161 | 119 | 0 | 35 | 195 | 376 | 536 | 1.73e-11 | 67.0 |
MS.gene80886.t1 | AT1G05670 | 26.087 | 161 | 119 | 0 | 35 | 195 | 376 | 536 | 1.73e-11 | 67.0 |
MS.gene80886.t1 | AT1G05670 | 26.087 | 161 | 119 | 0 | 35 | 195 | 376 | 536 | 1.73e-11 | 67.0 |
MS.gene80886.t1 | AT5G65560 | 24.483 | 290 | 183 | 8 | 67 | 324 | 275 | 560 | 1.85e-11 | 67.0 |
MS.gene80886.t1 | AT5G65560 | 24.483 | 290 | 183 | 8 | 67 | 324 | 275 | 560 | 1.85e-11 | 67.0 |
MS.gene80886.t1 | AT5G65560 | 24.483 | 290 | 183 | 8 | 67 | 324 | 275 | 560 | 1.85e-11 | 67.0 |
MS.gene80886.t1 | AT1G63230 | 23.464 | 179 | 135 | 1 | 39 | 217 | 140 | 316 | 1.89e-11 | 65.5 |
MS.gene80886.t1 | AT5G15010 | 27.273 | 143 | 99 | 2 | 44 | 185 | 372 | 510 | 2.18e-11 | 66.2 |
MS.gene80886.t1 | AT5G65820 | 26.389 | 144 | 101 | 1 | 75 | 218 | 282 | 420 | 2.37e-11 | 66.2 |
MS.gene80886.t1 | AT5G04810 | 25.974 | 154 | 108 | 1 | 34 | 181 | 718 | 871 | 2.85e-11 | 66.2 |
MS.gene80886.t1 | AT3G48810 | 23.123 | 333 | 206 | 11 | 35 | 327 | 271 | 593 | 2.88e-11 | 66.2 |
MS.gene80886.t1 | AT3G16890 | 22.381 | 210 | 147 | 2 | 35 | 228 | 321 | 530 | 2.98e-11 | 65.9 |
MS.gene80886.t1 | AT3G16890 | 22.381 | 210 | 147 | 2 | 35 | 228 | 450 | 659 | 3.06e-11 | 65.9 |
MS.gene80886.t1 | AT3G60050 | 27.564 | 156 | 113 | 0 | 40 | 195 | 214 | 369 | 3.23e-11 | 65.5 |
MS.gene80886.t1 | AT3G60050 | 27.564 | 156 | 113 | 0 | 40 | 195 | 214 | 369 | 3.23e-11 | 65.5 |
MS.gene80886.t1 | AT5G41170 | 21.233 | 292 | 189 | 3 | 49 | 340 | 11 | 261 | 4.18e-11 | 65.1 |
MS.gene80886.t1 | AT5G41170 | 20.890 | 292 | 190 | 2 | 49 | 340 | 111 | 361 | 5.46e-11 | 65.1 |
MS.gene80886.t1 | AT1G63130 | 21.192 | 302 | 228 | 4 | 41 | 340 | 147 | 440 | 5.87e-11 | 65.1 |
MS.gene80886.t1 | AT1G63130 | 21.192 | 302 | 228 | 4 | 41 | 340 | 147 | 440 | 5.87e-11 | 65.1 |
MS.gene80886.t1 | AT5G41170 | 20.890 | 292 | 190 | 2 | 49 | 340 | 111 | 361 | 5.92e-11 | 64.7 |
MS.gene80886.t1 | AT1G79490 | 25.455 | 165 | 123 | 0 | 34 | 198 | 337 | 501 | 6.87e-11 | 65.1 |
MS.gene80886.t1 | AT1G62670 | 20.915 | 306 | 230 | 5 | 38 | 340 | 144 | 440 | 7.00e-11 | 64.7 |
MS.gene80886.t1 | AT1G62670 | 20.915 | 306 | 230 | 5 | 38 | 340 | 144 | 440 | 7.00e-11 | 64.7 |
MS.gene80886.t1 | AT2G15630 | 26.515 | 132 | 97 | 0 | 67 | 198 | 419 | 550 | 7.49e-11 | 64.7 |
Find 89 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGGAGCTCACTTCCCATTT+TGG | 0.146501 | 6.3:-15054243 | None:intergenic |
GGGTCACTTCAACGGGTTTC+GGG | 0.165993 | 6.3:+15044232 | MS.gene80886:CDS |
TGCATGACAATATAGATATC+AGG | 0.270813 | 6.3:-15050488 | None:intergenic |
TGGGTCACTTCAACGGGTTT+CGG | 0.273683 | 6.3:+15044231 | MS.gene80886:CDS |
TCAGGAATACAACACTGTTT+TGG | 0.277702 | 6.3:+15044315 | MS.gene80886:CDS |
CAGATGTAGGTTTGTACATT+TGG | 0.278420 | 6.3:-15047418 | None:intergenic |
GCATCGAAATCATCAGTAAA+AGG | 0.287772 | 6.3:-15047900 | None:intergenic |
TGATATGACTGCAGCTGGTC+TGG | 0.305313 | 6.3:+15047824 | MS.gene80886:CDS |
GAACTCTGATCAGGCTGTTC+AGG | 0.318795 | 6.3:+15047251 | MS.gene80886:CDS |
GCATGATGCTTTCTTCTTCA+AGG | 0.330861 | 6.3:+15046568 | MS.gene80886:CDS |
TTAAATAAGTTCTGCTATGC+TGG | 0.341477 | 6.3:+15047849 | MS.gene80886:CDS |
GCAAATTTCTATAGATATAC+TGG | 0.342216 | 6.3:+15054098 | MS.gene80886:CDS |
ATACTAATGCTAACTACATA+TGG | 0.360715 | 6.3:+15054408 | MS.gene80886:CDS |
ATATTGTCATGCAAGTAATT+AGG | 0.361423 | 6.3:+15050498 | MS.gene80886:CDS |
GGGAAGTGAGCTCCTGATTA+TGG | 0.363803 | 6.3:+15054250 | MS.gene80886:CDS |
TTCCAGCAGAAGAGTATAAC+AGG | 0.368904 | 6.3:+15044272 | MS.gene80886:CDS |
CCAAATGAAAATCATGGGTT+TGG | 0.377536 | 6.3:+15046592 | MS.gene80886:CDS |
CTCCTGTTATACTCTTCTGC+TGG | 0.379633 | 6.3:-15044274 | None:intergenic |
CACTCGGTCTATGCGTCCTT+GGG | 0.383140 | 6.3:-15047461 | None:intergenic |
TACATTTGGCTTTACTTCCA+TGG | 0.387492 | 6.3:-15047404 | None:intergenic |
TTTCACCAGCAGCCATAATC+AGG | 0.387899 | 6.3:-15054262 | None:intergenic |
GCGAAATGGGTCACTTCAAC+GGG | 0.389173 | 6.3:+15044225 | MS.gene80886:CDS |
ACACTCGGTCTATGCGTCCT+TGG | 0.391054 | 6.3:-15047462 | None:intergenic |
CAACAGCAGAATACGTTACT+AGG | 0.407844 | 6.3:+15048121 | MS.gene80886:CDS |
TATGAAGATATGATGCTTGA+TGG | 0.425865 | 6.3:+15046482 | MS.gene80886:CDS |
CAAGGACCAAATGAAAATCA+TGG | 0.433875 | 6.3:+15046586 | MS.gene80886:CDS |
TGCTGATTTCAAGAATGTTA+AGG | 0.437500 | 6.3:+15048200 | MS.gene80886:CDS |
CAGCAGCATTAAATGCAGTA+TGG | 0.448079 | 6.3:-15048179 | None:intergenic |
GGCGTGGAGGATTCTTGAAC+AGG | 0.453377 | 6.3:+15048142 | MS.gene80886:CDS |
GATATGACTGCAGCTGGTCT+GGG | 0.462476 | 6.3:+15047825 | MS.gene80886:CDS |
TGAGTAACCAACATGAGTCT+TGG | 0.472349 | 6.3:-15055117 | None:intergenic |
GGATGCACTTCTTGAAATGC+TGG | 0.478829 | 6.3:+15050448 | MS.gene80886:CDS |
CACCATCACATTCTCAGCAT+TGG | 0.479555 | 6.3:-15048067 | None:intergenic |
ACTTCTTGAAATGCTGGAAA+AGG | 0.494222 | 6.3:+15050454 | MS.gene80886:CDS |
AACTTTCTAATTTCAACCTG+TGG | 0.505817 | 6.3:+15047219 | MS.gene80886:CDS |
GAAGTGCAAGAACTCTGATC+AGG | 0.506823 | 6.3:+15047242 | MS.gene80886:CDS |
TGCAGTATGGTATGCAACAA+AGG | 0.508294 | 6.3:-15048166 | None:intergenic |
TGACTGCAGACGCTTGCAGA+GGG | 0.508918 | 6.3:+15054045 | MS.gene80886:intron |
GATTATGGCTGCTGGTGAAA+AGG | 0.512069 | 6.3:+15054265 | MS.gene80886:CDS |
ACTGCAGACGCTTGCAGAGG+GGG | 0.512879 | 6.3:+15054047 | MS.gene80886:intron |
CAAGGGAATGAAAAGTTTCA+CGG | 0.514406 | 6.3:-15046517 | None:intergenic |
CTTGCTGTTGGATCCATGAG+AGG | 0.520661 | 6.3:+15046536 | MS.gene80886:CDS |
TGCAGTTGAAGCATACTACC+AGG | 0.521493 | 6.3:+15054469 | MS.gene80886:CDS |
TACTAATGCTAACTACATAT+GGG | 0.522217 | 6.3:+15054409 | MS.gene80886:CDS |
AAGACCACGGTCAATCTCTC+CGG | 0.522416 | 6.3:-15053168 | None:intergenic |
TGCGAAATGGGTCACTTCAA+CGG | 0.523013 | 6.3:+15044224 | MS.gene80886:CDS |
AGAGTTCTTGCACTTCCCAC+AGG | 0.523543 | 6.3:-15047235 | None:intergenic |
ATGGTTGGCTACACTGAGAA+AGG | 0.530317 | 6.3:+15054072 | MS.gene80886:CDS |
TAAATAAGTTCTGCTATGCT+GGG | 0.534812 | 6.3:+15047850 | MS.gene80886:CDS |
GTCCGTGATATGACTGCAGC+TGG | 0.535410 | 6.3:+15047819 | MS.gene80886:CDS |
AAGGACCAAATGAAAATCAT+GGG | 0.535637 | 6.3:+15046587 | MS.gene80886:CDS |
TGCAGGTGCTATTGTCATGC+CGG | 0.537597 | 6.3:+15053149 | MS.gene80886:intron |
CTAGTAACGTATTCTGCTGT+TGG | 0.538382 | 6.3:-15048120 | None:intergenic |
GCAGTATGGTATGCAACAAA+GGG | 0.538769 | 6.3:-15048165 | None:intergenic |
GCATGACAATATAGATATCA+GGG | 0.542739 | 6.3:-15050487 | None:intergenic |
TTTGGAGGAGATGAAATCCA+TGG | 0.546073 | 6.3:+15047387 | MS.gene80886:CDS |
ATGCATTCTAGAGCCTCTCA+TGG | 0.555834 | 6.3:-15046549 | None:intergenic |
GAATGAAAAGTTTCACGGGT+TGG | 0.567753 | 6.3:-15046512 | None:intergenic |
AAGGGAATGAAAAGTTTCAC+GGG | 0.575462 | 6.3:-15046516 | None:intergenic |
GAGCTCCTGATTATGGCTGC+TGG | 0.578547 | 6.3:+15054257 | MS.gene80886:CDS |
GCAGAATACGTTACTAGGCG+TGG | 0.586330 | 6.3:+15048126 | MS.gene80886:CDS |
GGTCACTTCAACGGGTTTCG+GGG | 0.588595 | 6.3:+15044233 | MS.gene80886:CDS |
AGATGATCCAAGACTCATGT+TGG | 0.589164 | 6.3:+15055110 | MS.gene80886:CDS |
ATGTTCTAAATCTCGAGCGA+AGG | 0.591286 | 6.3:-15055152 | None:intergenic |
ACTTTCTAATTTCAACCTGT+GGG | 0.591660 | 6.3:+15047220 | MS.gene80886:CDS |
ATGAGTCTTGGATCATCTTG+AGG | 0.593442 | 6.3:-15055105 | None:intergenic |
CAATGCTGAGAATGTGATGG+TGG | 0.593534 | 6.3:+15048068 | MS.gene80886:CDS |
ATGTGGAGAGGTCAAAGCAA+TGG | 0.595505 | 6.3:+15048022 | MS.gene80886:CDS |
CTTCAACTGCAGCTAACGAA+GGG | 0.596213 | 6.3:-15054457 | None:intergenic |
CTACATGCATGTGCAGCCCA+AGG | 0.607018 | 6.3:+15047445 | MS.gene80886:CDS |
GCTTCAACTGCAGCTAACGA+AGG | 0.607314 | 6.3:-15054458 | None:intergenic |
GACCAGCTGCAGTCATATCA+CGG | 0.607414 | 6.3:-15047821 | None:intergenic |
CTCTCATGGATCCAACAGCA+AGG | 0.608407 | 6.3:-15046535 | None:intergenic |
TGCATGTAGCAAGCAGATGT+AGG | 0.624370 | 6.3:-15047431 | None:intergenic |
AATAACTCACTTTCAAACCC+TGG | 0.633843 | 6.3:-15054487 | None:intergenic |
CATGACAATATAGATATCAG+GGG | 0.638180 | 6.3:-15050486 | None:intergenic |
TCTCATGGATCCAACAGCAA+GGG | 0.638957 | 6.3:-15046534 | None:intergenic |
GACTGCAGACGCTTGCAGAG+GGG | 0.655013 | 6.3:+15054046 | MS.gene80886:intron |
GATGGTGGGTGTTACTGATG+AGG | 0.655231 | 6.3:+15048083 | MS.gene80886:CDS |
ATGACTGCAGACGCTTGCAG+AGG | 0.659637 | 6.3:+15054044 | MS.gene80886:intron |
GCAGTTGAAGCATACTACCA+GGG | 0.677884 | 6.3:+15054470 | MS.gene80886:CDS |
CGCCAATGCTGAGAATGTGA+TGG | 0.683499 | 6.3:+15048065 | MS.gene80886:CDS |
TAATGCTGCAGAAATTTATG+TGG | 0.684727 | 6.3:+15053226 | MS.gene80886:CDS |
GTTCTCTCAATGCTCAACGA+AGG | 0.689538 | 6.3:+15044338 | MS.gene80886:CDS |
ATATGATGCTTGATGGAGTG+AGG | 0.694446 | 6.3:+15046489 | MS.gene80886:CDS |
AATGCTGAGAATGTGATGGT+GGG | 0.697576 | 6.3:+15048069 | MS.gene80886:CDS |
AGGTTATTGAGTATGTGGAG+AGG | 0.702509 | 6.3:+15048010 | MS.gene80886:intron |
GAATACGTTACTAGGCGTGG+AGG | 0.710334 | 6.3:+15048129 | MS.gene80886:CDS |
CATGCCGGAGAGATTGACCG+TGG | 0.731385 | 6.3:+15053164 | MS.gene80886:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 15044099 | 15055176 | 15044099 | ID=MS.gene80886 |
chr6.3 | mRNA | 15044099 | 15055176 | 15044099 | ID=MS.gene80886.t1;Parent=MS.gene80886 |
chr6.3 | exon | 15044099 | 15044123 | 15044099 | ID=MS.gene80886.t1.exon1;Parent=MS.gene80886.t1 |
chr6.3 | CDS | 15044099 | 15044123 | 15044099 | ID=cds.MS.gene80886.t1;Parent=MS.gene80886.t1 |
chr6.3 | exon | 15044206 | 15044359 | 15044206 | ID=MS.gene80886.t1.exon2;Parent=MS.gene80886.t1 |
chr6.3 | CDS | 15044206 | 15044359 | 15044206 | ID=cds.MS.gene80886.t1;Parent=MS.gene80886.t1 |
chr6.3 | exon | 15046460 | 15046622 | 15046460 | ID=MS.gene80886.t1.exon3;Parent=MS.gene80886.t1 |
chr6.3 | CDS | 15046460 | 15046622 | 15046460 | ID=cds.MS.gene80886.t1;Parent=MS.gene80886.t1 |
chr6.3 | exon | 15047207 | 15047272 | 15047207 | ID=MS.gene80886.t1.exon4;Parent=MS.gene80886.t1 |
chr6.3 | CDS | 15047207 | 15047272 | 15047207 | ID=cds.MS.gene80886.t1;Parent=MS.gene80886.t1 |
chr6.3 | exon | 15047385 | 15047482 | 15047385 | ID=MS.gene80886.t1.exon5;Parent=MS.gene80886.t1 |
chr6.3 | CDS | 15047385 | 15047482 | 15047385 | ID=cds.MS.gene80886.t1;Parent=MS.gene80886.t1 |
chr6.3 | exon | 15047809 | 15047926 | 15047809 | ID=MS.gene80886.t1.exon6;Parent=MS.gene80886.t1 |
chr6.3 | CDS | 15047809 | 15047926 | 15047809 | ID=cds.MS.gene80886.t1;Parent=MS.gene80886.t1 |
chr6.3 | exon | 15048012 | 15048221 | 15048012 | ID=MS.gene80886.t1.exon7;Parent=MS.gene80886.t1 |
chr6.3 | CDS | 15048012 | 15048221 | 15048012 | ID=cds.MS.gene80886.t1;Parent=MS.gene80886.t1 |
chr6.3 | exon | 15050443 | 15050519 | 15050443 | ID=MS.gene80886.t1.exon8;Parent=MS.gene80886.t1 |
chr6.3 | CDS | 15050443 | 15050519 | 15050443 | ID=cds.MS.gene80886.t1;Parent=MS.gene80886.t1 |
chr6.3 | exon | 15053154 | 15053247 | 15053154 | ID=MS.gene80886.t1.exon9;Parent=MS.gene80886.t1 |
chr6.3 | CDS | 15053154 | 15053247 | 15053154 | ID=cds.MS.gene80886.t1;Parent=MS.gene80886.t1 |
chr6.3 | exon | 15054054 | 15054119 | 15054054 | ID=MS.gene80886.t1.exon10;Parent=MS.gene80886.t1 |
chr6.3 | CDS | 15054054 | 15054119 | 15054054 | ID=cds.MS.gene80886.t1;Parent=MS.gene80886.t1 |
chr6.3 | exon | 15054209 | 15054286 | 15054209 | ID=MS.gene80886.t1.exon11;Parent=MS.gene80886.t1 |
chr6.3 | CDS | 15054209 | 15054286 | 15054209 | ID=cds.MS.gene80886.t1;Parent=MS.gene80886.t1 |
chr6.3 | exon | 15054398 | 15054499 | 15054398 | ID=MS.gene80886.t1.exon12;Parent=MS.gene80886.t1 |
chr6.3 | CDS | 15054398 | 15054499 | 15054398 | ID=cds.MS.gene80886.t1;Parent=MS.gene80886.t1 |
chr6.3 | exon | 15055093 | 15055176 | 15055093 | ID=MS.gene80886.t1.exon13;Parent=MS.gene80886.t1 |
chr6.3 | CDS | 15055093 | 15055176 | 15055093 | ID=cds.MS.gene80886.t1;Parent=MS.gene80886.t1 |
Gene Sequence |
Protein sequence |