Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81958.t1 | PNY17631.1 | 88.6 | 332 | 38 | 0 | 1 | 332 | 39 | 370 | 3.50E-171 | 610.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81958.t1 | Q84VY3 | 68.8 | 336 | 101 | 1 | 1 | 332 | 55 | 390 | 4.5e-135 | 482.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81958.t1 | A0A2K3PQT1 | 88.6 | 332 | 38 | 0 | 1 | 332 | 39 | 370 | 2.5e-171 | 610.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene81958 | 0.813141 | 2.97E-51 | -1.69E-46 |
| MS.gene050298 | MS.gene81958 | 0.805858 | 1.09E-49 | -1.69E-46 |
| MS.gene050563 | MS.gene81958 | 0.817074 | 3.98E-52 | -1.69E-46 |
| MS.gene050584 | MS.gene81958 | 0.849635 | 2.85E-60 | -1.69E-46 |
| MS.gene050585 | MS.gene81958 | 0.854716 | 1.02E-61 | -1.69E-46 |
| MS.gene050587 | MS.gene81958 | 0.864022 | 1.64E-64 | -1.69E-46 |
| MS.gene05143 | MS.gene81958 | 0.804308 | 2.30E-49 | -1.69E-46 |
| MS.gene051789 | MS.gene81958 | 0.857185 | 1.94E-62 | -1.69E-46 |
| MS.gene052142 | MS.gene81958 | 0.813599 | 2.36E-51 | -1.69E-46 |
| MS.gene053074 | MS.gene81958 | 0.809714 | 1.65E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene81958 | 0.843144 | 1.68E-58 | -1.69E-46 |
| MS.gene05456 | MS.gene81958 | 0.881068 | 3.26E-70 | -1.69E-46 |
| MS.gene054596 | MS.gene81958 | 0.805958 | 1.04E-49 | -1.69E-46 |
| MS.gene055359 | MS.gene81958 | 0.804812 | 1.80E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene81958 | 0.857772 | 1.30E-62 | -1.69E-46 |
| MS.gene059768 | MS.gene81958 | 0.823763 | 1.16E-53 | -1.69E-46 |
| MS.gene060691 | MS.gene81958 | 0.831469 | 1.64E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81958.t1 | MTR_3g090010 | 84.985 | 333 | 50 | 0 | 1 | 333 | 38 | 370 | 0.0 | 605 |
| MS.gene81958.t1 | MTR_3g090100 | 76.205 | 332 | 79 | 0 | 1 | 332 | 34 | 365 | 0.0 | 547 |
| MS.gene81958.t1 | MTR_3g090020 | 76.205 | 332 | 79 | 0 | 1 | 332 | 34 | 365 | 0.0 | 541 |
| MS.gene81958.t1 | MTR_1g029150 | 74.850 | 334 | 81 | 1 | 1 | 331 | 55 | 388 | 0.0 | 525 |
| MS.gene81958.t1 | MTR_3g089025 | 73.193 | 332 | 89 | 0 | 1 | 332 | 37 | 368 | 0.0 | 520 |
| MS.gene81958.t1 | MTR_5g024130 | 64.458 | 332 | 115 | 2 | 1 | 331 | 62 | 391 | 8.35e-159 | 450 |
| MS.gene81958.t1 | MTR_4g087440 | 64.458 | 332 | 115 | 2 | 1 | 331 | 62 | 391 | 1.19e-158 | 449 |
| MS.gene81958.t1 | MTR_3g090110 | 61.017 | 118 | 23 | 1 | 177 | 294 | 1 | 95 | 8.65e-43 | 144 |
| MS.gene81958.t1 | MTR_3g089980 | 68.367 | 98 | 18 | 1 | 197 | 294 | 6 | 90 | 2.85e-36 | 126 |
| MS.gene81958.t1 | MTR_3g089973 | 46.622 | 148 | 35 | 2 | 177 | 324 | 1 | 104 | 9.20e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81958.t1 | AT1G43800 | 68.750 | 336 | 101 | 1 | 1 | 332 | 55 | 390 | 1.49e-175 | 492 |
| MS.gene81958.t1 | AT3G02630 | 62.462 | 333 | 121 | 2 | 1 | 331 | 64 | 394 | 8.57e-154 | 437 |
| MS.gene81958.t1 | AT2G43710 | 62.651 | 332 | 121 | 2 | 1 | 331 | 70 | 399 | 9.16e-153 | 435 |
| MS.gene81958.t1 | AT2G43710 | 62.651 | 332 | 121 | 2 | 1 | 331 | 70 | 399 | 1.33e-152 | 434 |
| MS.gene81958.t1 | AT3G02610 | 62.611 | 337 | 119 | 4 | 1 | 331 | 76 | 411 | 9.05e-152 | 432 |
| MS.gene81958.t1 | AT3G02610 | 62.611 | 337 | 119 | 4 | 1 | 331 | 74 | 409 | 9.12e-152 | 432 |
| MS.gene81958.t1 | AT3G02620 | 61.424 | 337 | 123 | 4 | 1 | 331 | 69 | 404 | 4.68e-149 | 426 |
| MS.gene81958.t1 | AT3G02620 | 61.424 | 337 | 123 | 4 | 1 | 331 | 66 | 401 | 5.55e-149 | 425 |
| MS.gene81958.t1 | AT5G16230 | 62.048 | 332 | 121 | 4 | 4 | 331 | 69 | 399 | 5.60e-149 | 425 |
| MS.gene81958.t1 | AT5G16240 | 60.661 | 333 | 127 | 2 | 1 | 331 | 62 | 392 | 3.29e-148 | 423 |
| MS.gene81958.t1 | AT5G16230 | 61.420 | 324 | 120 | 4 | 12 | 331 | 1 | 323 | 3.87e-145 | 412 |
| MS.gene81958.t1 | AT3G02620 | 61.350 | 326 | 119 | 4 | 12 | 331 | 1 | 325 | 8.00e-145 | 412 |
Find 92 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGATCAAGTGAAGGCATTA+AGG | 0.300188 | 3.2:-76345898 | MS.gene81958:CDS |
| CTCTTGCAGCCTCCTAATCT+TGG | 0.308277 | 3.2:+76344343 | None:intergenic |
| AAAACATATCTCTATCTTTC+GGG | 0.321851 | 3.2:-76345677 | MS.gene81958:CDS |
| AGTGCCCGGGCATTGTTATA+TGG | 0.326160 | 3.2:+76344555 | None:intergenic |
| GGGTCGGGTTGATATGTTCA+TGG | 0.349549 | 3.2:-76345657 | MS.gene81958:CDS |
| CAAAACATATCTCTATCTTT+CGG | 0.357765 | 3.2:-76345678 | MS.gene81958:CDS |
| CTTGATTGGACGTTGGAGAT+TGG | 0.360703 | 3.2:-76344429 | MS.gene81958:CDS |
| GATAGCTTGGAGTTCTTGAT+TGG | 0.365666 | 3.2:-76344443 | MS.gene81958:CDS |
| CCAACATTCCTCCACTGGTT+TGG | 0.368196 | 3.2:+76345970 | None:intergenic |
| TTGCTTATGGTGTAGGATAT+AGG | 0.368907 | 3.2:-76344821 | MS.gene81958:intron |
| GGGCTGTATGGACACGCTCT+TGG | 0.392310 | 3.2:-76345733 | MS.gene81958:CDS |
| CGATCAAGTGAAGGCATTAA+GGG | 0.400225 | 3.2:-76345897 | MS.gene81958:CDS |
| TTTCAAGTCATTAGAGAGTT+GGG | 0.400750 | 3.2:-76346017 | MS.gene81958:CDS |
| ACAGAAAAGTGGCTCGCTCT+TGG | 0.405583 | 3.2:+76344756 | None:intergenic |
| AGATGAAACCTAAGTTTAGT+TGG | 0.414064 | 3.2:-76344298 | MS.gene81958:CDS |
| CATTGCCAACGTACCAATCA+TGG | 0.428195 | 3.2:-76345808 | MS.gene81958:CDS |
| ACCATCATGCATCAAGTGCC+CGG | 0.431844 | 3.2:+76344541 | None:intergenic |
| ATCGCTGTCATCGTCTCTGT+GGG | 0.438188 | 3.2:+76344596 | None:intergenic |
| GTGGGCTTGCACCCAAGATT+AGG | 0.440604 | 3.2:-76344355 | MS.gene81958:CDS |
| GCACCAATCCATGGGCTGTA+TGG | 0.441370 | 3.2:-76345745 | MS.gene81958:CDS |
| CTTGGACGGCTGAGGAGAAT+AGG | 0.445934 | 3.2:-76345715 | MS.gene81958:CDS |
| TCGAAGACCCAACTAAACTT+AGG | 0.447054 | 3.2:+76344290 | None:intergenic |
| AAAACTACAAAATAATCGTT+TGG | 0.448525 | 3.2:+76345857 | None:intergenic |
| GATGAAACCTAAGTTTAGTT+GGG | 0.451996 | 3.2:-76344297 | MS.gene81958:CDS |
| ATATCTCTATCTTTCGGGTC+GGG | 0.456137 | 3.2:-76345672 | MS.gene81958:CDS |
| TCCTCCACTGGTTTGGCTAG+TGG | 0.461572 | 3.2:+76345977 | None:intergenic |
| CCAGTCTGTTAAACCATGAT+TGG | 0.462427 | 3.2:+76345795 | None:intergenic |
| GGCTGCCAACATTCCTCCAC+TGG | 0.466668 | 3.2:+76345965 | None:intergenic |
| CTGCAGAGAAATGACTGAAT+AGG | 0.475282 | 3.2:+76344507 | None:intergenic |
| TCTTGCAGCCTCCTAATCTT+GGG | 0.478217 | 3.2:+76344344 | None:intergenic |
| GCATAAGCAAAAGCCTTGTA+TGG | 0.479543 | 3.2:+76344785 | None:intergenic |
| TCTGCAGTGGCACAACGTAT+TGG | 0.480986 | 3.2:-76344491 | MS.gene81958:CDS |
| GTACGTTGGCAATGCTTCCT+CGG | 0.500450 | 3.2:+76345817 | None:intergenic |
| ATCCAATACTTAATTAGAGC+TGG | 0.502293 | 3.2:-76345623 | MS.gene81958:CDS |
| ATGGTGTAGGATATAGGAAC+AGG | 0.502877 | 3.2:-76344815 | MS.gene81958:intron |
| AGTAACCATATAACAATGCC+CGG | 0.509130 | 3.2:-76344560 | MS.gene81958:CDS |
| TGCCAGCTCTAATTAAGTAT+TGG | 0.509971 | 3.2:+76345621 | None:intergenic |
| CCAATCATGGTTTAACAGAC+TGG | 0.510965 | 3.2:-76345795 | MS.gene81958:CDS |
| CATATCTCTATCTTTCGGGT+CGG | 0.512882 | 3.2:-76345673 | MS.gene81958:CDS |
| ATGGTTTAACAGACTGGATG+GGG | 0.515527 | 3.2:-76345789 | MS.gene81958:CDS |
| CTGGTTCAAGCACCAATCCA+TGG | 0.522757 | 3.2:-76345754 | MS.gene81958:CDS |
| TCATGGTTTAACAGACTGGA+TGG | 0.523384 | 3.2:-76345791 | MS.gene81958:CDS |
| CCAAACCAGTGGAGGAATGT+TGG | 0.526760 | 3.2:-76345970 | MS.gene81958:CDS |
| GATGGGGTTGGAGACGAGAC+TGG | 0.544491 | 3.2:-76345773 | MS.gene81958:CDS |
| TCCGACGGTAGTGAAGAGTC+TGG | 0.546524 | 3.2:+76345929 | None:intergenic |
| TTTAACAGACTGGATGGGGT+TGG | 0.546711 | 3.2:-76345785 | MS.gene81958:CDS |
| CATGGTTTAACAGACTGGAT+GGG | 0.552177 | 3.2:-76345790 | MS.gene81958:CDS |
| CAGCATGGCTCGACTAGCTA+AGG | 0.555157 | 3.2:-76344726 | MS.gene81958:CDS |
| TGTATGGACACGCTCTTGGA+CGG | 0.555722 | 3.2:-76345729 | MS.gene81958:CDS |
| AAAAGTGGCTCGCTCTTGGA+AGG | 0.559887 | 3.2:+76344760 | None:intergenic |
| ATACTTAATTAGAGCTGGCA+TGG | 0.560206 | 3.2:-76345618 | MS.gene81958:intron |
| GAGCGTGTCCATACAGCCCA+TGG | 0.565706 | 3.2:+76345737 | None:intergenic |
| CCATCATGCATCAAGTGCCC+GGG | 0.568213 | 3.2:+76344542 | None:intergenic |
| TAGTGACTACATCGATAGCT+TGG | 0.572127 | 3.2:-76344456 | MS.gene81958:CDS |
| TATCGCTGTCATCGTCTCTG+TGG | 0.572162 | 3.2:+76344595 | None:intergenic |
| CCAACGCTTGCATGTATATG+TGG | 0.573043 | 3.2:-76344692 | MS.gene81958:CDS |
| TGTCCATACAGCCCATGGAT+TGG | 0.576962 | 3.2:+76345742 | None:intergenic |
| CCACATATACATGCAAGCGT+TGG | 0.581994 | 3.2:+76344692 | None:intergenic |
| TTAAACCATGATTGGTACGT+TGG | 0.582627 | 3.2:+76345803 | None:intergenic |
| TGGTTCAAGCACCAATCCAT+GGG | 0.582779 | 3.2:-76345753 | MS.gene81958:CDS |
| GACACGCTCTTGGACGGCTG+AGG | 0.585462 | 3.2:-76345723 | MS.gene81958:CDS |
| ATTCAGTCATTTCTCTGCAG+TGG | 0.588279 | 3.2:-76344504 | MS.gene81958:CDS |
| GGCTTGCACCCAAGATTAGG+AGG | 0.589066 | 3.2:-76344352 | MS.gene81958:CDS |
| AACAGGAAGTAATCCATACA+AGG | 0.590466 | 3.2:-76344798 | MS.gene81958:CDS |
| GCCAGACTCTTCACTACCGT+CGG | 0.590866 | 3.2:-76345930 | MS.gene81958:CDS |
| TGGAGTTCTTGATTGGACGT+TGG | 0.591629 | 3.2:-76344436 | MS.gene81958:CDS |
| GCCACTAGCCAAACCAGTGG+AGG | 0.597505 | 3.2:-76345978 | MS.gene81958:CDS |
| ACAACGTATTGGTGTGTACA+CGG | 0.599250 | 3.2:-76344480 | MS.gene81958:CDS |
| GCTGCCGTCTGACAGAAAAG+TGG | 0.600013 | 3.2:+76344745 | None:intergenic |
| CCCGGGCACTTGATGCATGA+TGG | 0.601605 | 3.2:-76344542 | MS.gene81958:CDS |
| GATCATTGCAAAACTTCTAG+AGG | 0.605970 | 3.2:-76344624 | MS.gene81958:CDS |
| GCTAGAGGGTTTGACAAGCG+AGG | 0.609085 | 3.2:-76344402 | MS.gene81958:CDS |
| TGGAGATTGGAGAAGCTAGA+GGG | 0.609211 | 3.2:-76344416 | MS.gene81958:CDS |
| GAAGGCATTAAGGGATCGAA+CGG | 0.611309 | 3.2:-76345888 | MS.gene81958:CDS |
| AGAAATGACTGAATAGGTGT+GGG | 0.611780 | 3.2:+76344513 | None:intergenic |
| TTGGAGATTGGAGAAGCTAG+AGG | 0.613405 | 3.2:-76344417 | MS.gene81958:CDS |
| CGTGCACAAGAGATCGTGTG+TGG | 0.620067 | 3.2:-76344374 | MS.gene81958:CDS |
| ACGGCTGAGGAGAATAGGCA+TGG | 0.622537 | 3.2:-76345710 | MS.gene81958:CDS |
| CATTGCAAAACTTCTAGAGG+TGG | 0.625212 | 3.2:-76344621 | MS.gene81958:CDS |
| CTAGAGGGTTTGACAAGCGA+GGG | 0.626748 | 3.2:-76344401 | MS.gene81958:CDS |
| TGAGTTCATCGATCAAGTGA+AGG | 0.637744 | 3.2:-76345906 | MS.gene81958:CDS |
| GCCACGAGATTGCATATGAG+AGG | 0.641136 | 3.2:-76344646 | MS.gene81958:CDS |
| GAGAAATGACTGAATAGGTG+TGG | 0.645655 | 3.2:+76344512 | None:intergenic |
| TCCTCTCATATGCAATCTCG+TGG | 0.655385 | 3.2:+76344645 | None:intergenic |
| GTGCACAAGAGATCGTGTGT+GGG | 0.665993 | 3.2:-76344373 | MS.gene81958:CDS |
| GCTCGACTAGCTAAGGAGAG+AGG | 0.671356 | 3.2:-76344719 | MS.gene81958:CDS |
| GTAACCATATAACAATGCCC+GGG | 0.686646 | 3.2:-76344559 | MS.gene81958:CDS |
| TCGCTGTCATCGTCTCTGTG+GGG | 0.704169 | 3.2:+76344597 | None:intergenic |
| TGATCGATGAACTCATCCGA+CGG | 0.705040 | 3.2:+76345914 | None:intergenic |
| GCTGCCACTAGCCAAACCAG+TGG | 0.706140 | 3.2:-76345981 | MS.gene81958:CDS |
| GAGTCTGGCAACAAATCATG+TGG | 0.719794 | 3.2:+76345944 | None:intergenic |
| AGTGGGTGACATGATCACCG+AGG | 0.783297 | 3.2:-76345834 | MS.gene81958:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATCATAAATGAAATAA+CGG | + | chr3.2:76345131-76345150 | None:intergenic | 15.0% |
| !! | TAAAATTAATTGATTGCTTA+TGG | - | chr3.2:76345477-76345496 | MS.gene81958:intron | 15.0% |
| !! | TATTTCATTTATGATTAAGA+TGG | - | chr3.2:76345132-76345151 | MS.gene81958:intron | 15.0% |
| !!! | ATGATATTTTTTATACACAT+CGG | + | chr3.2:76344853-76344872 | None:intergenic | 15.0% |
| !! | AAAACTACAAAATAATCGTT+TGG | + | chr3.2:76344457-76344476 | None:intergenic | 20.0% |
| !! | AAAAGTGGAAGAAATATTAT+AGG | - | chr3.2:76345080-76345099 | MS.gene81958:intron | 20.0% |
| !!! | AGTCTAAAATAATTGTTACA+TGG | - | chr3.2:76345173-76345192 | MS.gene81958:intron | 20.0% |
| !!! | ATATCTTTCCATATTCATTT+TGG | - | chr3.2:76345012-76345031 | MS.gene81958:intron | 20.0% |
| !!! | CTTGAAAATTTCTTTCTTTT+CGG | + | chr3.2:76344281-76344300 | None:intergenic | 20.0% |
| !!! | GATTATTTTGTAGTTTTAGT+GGG | - | chr3.2:76344460-76344479 | MS.gene81958:CDS | 20.0% |
| !!! | TATCTTTCCATATTCATTTT+GGG | - | chr3.2:76345013-76345032 | MS.gene81958:intron | 20.0% |
| !!! | TGGTAAAGATTTAAAAGTAT+GGG | + | chr3.2:76345041-76345060 | None:intergenic | 20.0% |
| !!! | TTGAAAATTTCTTTCTTTTC+GGG | + | chr3.2:76344280-76344299 | None:intergenic | 20.0% |
| ! | AAAACATATCTCTATCTTTC+GGG | - | chr3.2:76344634-76344653 | MS.gene81958:CDS | 25.0% |
| ! | AATTTGTGTGGATCAATTTA+CGG | - | chr3.2:76344896-76344915 | MS.gene81958:intron | 25.0% |
| ! | ATCATCCATGTAAAAAAACA+GGG | + | chr3.2:76345437-76345456 | None:intergenic | 25.0% |
| ! | ATTACCAAAAAAATTGTGTG+TGG | + | chr3.2:76345271-76345290 | None:intergenic | 25.0% |
| ! | ATTCTTACTTTGTTCCTTAA+AGG | - | chr3.2:76345351-76345370 | MS.gene81958:intron | 25.0% |
| ! | CAAAACATATCTCTATCTTT+CGG | - | chr3.2:76344633-76344652 | MS.gene81958:CDS | 25.0% |
| ! | CTGGTAAAGATTTAAAAGTA+TGG | + | chr3.2:76345042-76345061 | None:intergenic | 25.0% |
| ! | TATCATCCATGTAAAAAAAC+AGG | + | chr3.2:76345438-76345457 | None:intergenic | 25.0% |
| ! | TTAAAATCAGAGAAGATATC+TGG | + | chr3.2:76345061-76345080 | None:intergenic | 25.0% |
| ! | TTACCAAAAAAATTGTGTGT+GGG | + | chr3.2:76345270-76345289 | None:intergenic | 25.0% |
| ! | TTCTTACTTTGTTCCTTAAA+GGG | - | chr3.2:76345352-76345371 | MS.gene81958:intron | 25.0% |
| !! | ATCTTTCCATATTCATTTTG+GGG | - | chr3.2:76345014-76345033 | MS.gene81958:intron | 25.0% |
| !!! | ACAATTTTTTTGGTAATGCT+TGG | - | chr3.2:76345274-76345293 | MS.gene81958:intron | 25.0% |
| !!! | CGATTATTTTGTAGTTTTAG+TGG | - | chr3.2:76344459-76344478 | MS.gene81958:CDS | 25.0% |
| !!! | TCTTCTCTGATTTTAAAAAG+TGG | - | chr3.2:76345065-76345084 | MS.gene81958:intron | 25.0% |
| AGATGAAACCTAAGTTTAGT+TGG | - | chr3.2:76346013-76346032 | MS.gene81958:CDS | 30.0% | |
| ATCCAATACTTAATTAGAGC+TGG | - | chr3.2:76344688-76344707 | MS.gene81958:CDS | 30.0% | |
| CATTCAAATGTGAATTTGTG+TGG | - | chr3.2:76344884-76344903 | MS.gene81958:intron | 30.0% | |
| GATGAAACCTAAGTTTAGTT+GGG | - | chr3.2:76346014-76346033 | MS.gene81958:CDS | 30.0% | |
| GTAAAAAAACAGGGTAATGT+AGG | + | chr3.2:76345428-76345447 | None:intergenic | 30.0% | |
| TAATTGATTGCTTATGGTGT+AGG | - | chr3.2:76345483-76345502 | MS.gene81958:intron | 30.0% | |
| TACCAAAAAAATTGTGTGTG+GGG | + | chr3.2:76345269-76345288 | None:intergenic | 30.0% | |
| ! | TAGACTTTTACAAAGAGAGA+GGG | + | chr3.2:76345159-76345178 | None:intergenic | 30.0% |
| ! | TTAGACTTTTACAAAGAGAG+AGG | + | chr3.2:76345160-76345179 | None:intergenic | 30.0% |
| ! | TTTCAAGTCATTAGAGAGTT+GGG | - | chr3.2:76344294-76344313 | MS.gene81958:CDS | 30.0% |
| !! | TCCATCCATATGATTTTGAT+CGG | + | chr3.2:76345391-76345410 | None:intergenic | 30.0% |
| !!! | CATTACCCTGTTTTTTTACA+TGG | - | chr3.2:76345429-76345448 | MS.gene81958:intron | 30.0% |
| !!! | TTTTCAAGTCATTAGAGAGT+TGG | - | chr3.2:76344293-76344312 | MS.gene81958:CDS | 30.0% |
| AACAGGAAGTAATCCATACA+AGG | - | chr3.2:76345513-76345532 | MS.gene81958:intron | 35.0% | |
| AGAAATGACTGAATAGGTGT+GGG | + | chr3.2:76345801-76345820 | None:intergenic | 35.0% | |
| AGTAACCATATAACAATGCC+CGG | - | chr3.2:76345751-76345770 | MS.gene81958:CDS | 35.0% | |
| ATACTTAATTAGAGCTGGCA+TGG | - | chr3.2:76344693-76344712 | MS.gene81958:CDS | 35.0% | |
| ATCCATTCTACACATTGGAT+CGG | - | chr3.2:76345309-76345328 | MS.gene81958:intron | 35.0% | |
| ATGTGTAGAATGGATGAATG+TGG | + | chr3.2:76345304-76345323 | None:intergenic | 35.0% | |
| CATGCAAATACTCACATAAG+AGG | + | chr3.2:76344971-76344990 | None:intergenic | 35.0% | |
| CATTCATCCATTCTACACAT+TGG | - | chr3.2:76345304-76345323 | MS.gene81958:intron | 35.0% | |
| GATCATTGCAAAACTTCTAG+AGG | - | chr3.2:76345687-76345706 | MS.gene81958:CDS | 35.0% | |
| TTAAACCATGATTGGTACGT+TGG | + | chr3.2:76344511-76344530 | None:intergenic | 35.0% | |
| TTGCTTATGGTGTAGGATAT+AGG | - | chr3.2:76345490-76345509 | MS.gene81958:intron | 35.0% | |
| ! | AGACTTTTACAAAGAGAGAG+GGG | + | chr3.2:76345158-76345177 | None:intergenic | 35.0% |
| ! | TGCCAGCTCTAATTAAGTAT+TGG | + | chr3.2:76344693-76344712 | None:intergenic | 35.0% |
| !! | CCATCCATATGATTTTGATC+GGG | + | chr3.2:76345390-76345409 | None:intergenic | 35.0% |
| !!! | TTCCCCACACACAATTTTTT+TGG | - | chr3.2:76345264-76345283 | MS.gene81958:intron | 35.0% |
| AAACAGGGTAATGTAGGTGA+TGG | + | chr3.2:76345422-76345441 | None:intergenic | 40.0% | |
| ATGGGACCCCAAAATGAATA+TGG | + | chr3.2:76345023-76345042 | None:intergenic | 40.0% | |
| ATGGTGTAGGATATAGGAAC+AGG | - | chr3.2:76345496-76345515 | MS.gene81958:intron | 40.0% | |
| ATGGTTTAACAGACTGGATG+GGG | - | chr3.2:76344522-76344541 | MS.gene81958:CDS | 40.0% | |
| ATTCAGTCATTTCTCTGCAG+TGG | - | chr3.2:76345807-76345826 | MS.gene81958:CDS | 40.0% | |
| CATGGTTTAACAGACTGGAT+GGG | - | chr3.2:76344521-76344540 | MS.gene81958:CDS | 40.0% | |
| CCAATCATGGTTTAACAGAC+TGG | - | chr3.2:76344516-76344535 | MS.gene81958:CDS | 40.0% | |
| CCAGTCTGTTAAACCATGAT+TGG | + | chr3.2:76344519-76344538 | None:intergenic | 40.0% | |
| CCCGATCAAAATCATATGGA+TGG | - | chr3.2:76345387-76345406 | MS.gene81958:intron | 40.0% | |
| CTGCAGAGAAATGACTGAAT+AGG | + | chr3.2:76345807-76345826 | None:intergenic | 40.0% | |
| GAGAAATGACTGAATAGGTG+TGG | + | chr3.2:76345802-76345821 | None:intergenic | 40.0% | |
| GATAGCTTGGAGTTCTTGAT+TGG | - | chr3.2:76345868-76345887 | MS.gene81958:CDS | 40.0% | |
| GTAACCATATAACAATGCCC+GGG | - | chr3.2:76345752-76345771 | MS.gene81958:CDS | 40.0% | |
| TAGTGACTACATCGATAGCT+TGG | - | chr3.2:76345855-76345874 | MS.gene81958:CDS | 40.0% | |
| TCATGGTTTAACAGACTGGA+TGG | - | chr3.2:76344520-76344539 | MS.gene81958:CDS | 40.0% | |
| TCGAAGACCCAACTAAACTT+AGG | + | chr3.2:76346024-76346043 | None:intergenic | 40.0% | |
| TGAGTTCATCGATCAAGTGA+AGG | - | chr3.2:76344405-76344424 | MS.gene81958:CDS | 40.0% | |
| ! | ACAACGTATTGGTGTGTACA+CGG | - | chr3.2:76345831-76345850 | MS.gene81958:CDS | 40.0% |
| ! | ATATCTCTATCTTTCGGGTC+GGG | - | chr3.2:76344639-76344658 | MS.gene81958:CDS | 40.0% |
| ! | CATATCTCTATCTTTCGGGT+CGG | - | chr3.2:76344638-76344657 | MS.gene81958:CDS | 40.0% |
| ! | CATTGCAAAACTTCTAGAGG+TGG | - | chr3.2:76345690-76345709 | MS.gene81958:CDS | 40.0% |
| ! | GCATAAGCAAAAGCCTTGTA+TGG | + | chr3.2:76345529-76345548 | None:intergenic | 40.0% |
| ! | TCCTTAAAGGGTGTGAATGT+GGG | - | chr3.2:76345364-76345383 | MS.gene81958:intron | 40.0% |
| ! | TTCCTTAAAGGGTGTGAATG+TGG | - | chr3.2:76345363-76345382 | MS.gene81958:intron | 40.0% |
| !! | CGATCAAGTGAAGGCATTAA+GGG | - | chr3.2:76344414-76344433 | MS.gene81958:CDS | 40.0% |
| !! | TCGATCAAGTGAAGGCATTA+AGG | - | chr3.2:76344413-76344432 | MS.gene81958:CDS | 40.0% |
| CATTGCCAACGTACCAATCA+TGG | - | chr3.2:76344503-76344522 | MS.gene81958:CDS | 45.0% | |
| CCAACGCTTGCATGTATATG+TGG | - | chr3.2:76345619-76345638 | MS.gene81958:CDS | 45.0% | |
| CCACATATACATGCAAGCGT+TGG | + | chr3.2:76345622-76345641 | None:intergenic | 45.0% | |
| CTTGATTGGACGTTGGAGAT+TGG | - | chr3.2:76345882-76345901 | MS.gene81958:CDS | 45.0% | |
| GACCGATCCAATGTGTAGAA+TGG | + | chr3.2:76345314-76345333 | None:intergenic | 45.0% | |
| GAGTCTGGCAACAAATCATG+TGG | + | chr3.2:76344370-76344389 | None:intergenic | 45.0% | |
| TCCTCTCATATGCAATCTCG+TGG | + | chr3.2:76345669-76345688 | None:intergenic | 45.0% | |
| TCTTGCAGCCTCCTAATCTT+GGG | + | chr3.2:76345970-76345989 | None:intergenic | 45.0% | |
| TGATCGATGAACTCATCCGA+CGG | + | chr3.2:76344400-76344419 | None:intergenic | 45.0% | |
| TGGAGATTGGAGAAGCTAGA+GGG | - | chr3.2:76345895-76345914 | MS.gene81958:CDS | 45.0% | |
| TGGAGTTCTTGATTGGACGT+TGG | - | chr3.2:76345875-76345894 | MS.gene81958:CDS | 45.0% | |
| TGGGCCCGATCAAAATCATA+TGG | - | chr3.2:76345383-76345402 | MS.gene81958:intron | 45.0% | |
| TGGTTCAAGCACCAATCCAT+GGG | - | chr3.2:76344558-76344577 | MS.gene81958:CDS | 45.0% | |
| TTGGAGATTGGAGAAGCTAG+AGG | - | chr3.2:76345894-76345913 | MS.gene81958:CDS | 45.0% | |
| TTTAACAGACTGGATGGGGT+TGG | - | chr3.2:76344526-76344545 | MS.gene81958:CDS | 45.0% | |
| !! | GAAGGCATTAAGGGATCGAA+CGG | - | chr3.2:76344423-76344442 | MS.gene81958:CDS | 45.0% |
| AAAAGTGGCTCGCTCTTGGA+AGG | + | chr3.2:76345554-76345573 | None:intergenic | 50.0% | |
| ACAGAAAAGTGGCTCGCTCT+TGG | + | chr3.2:76345558-76345577 | None:intergenic | 50.0% | |
| ACCATCATGCATCAAGTGCC+CGG | + | chr3.2:76345773-76345792 | None:intergenic | 50.0% | |
| ATCGCTGTCATCGTCTCTGT+GGG | + | chr3.2:76345718-76345737 | None:intergenic | 50.0% | |
| CCAAACCAGTGGAGGAATGT+TGG | - | chr3.2:76344341-76344360 | MS.gene81958:CDS | 50.0% | |
| CTAGAGGGTTTGACAAGCGA+GGG | - | chr3.2:76345910-76345929 | MS.gene81958:CDS | 50.0% | |
| CTCTTGCAGCCTCCTAATCT+TGG | + | chr3.2:76345971-76345990 | None:intergenic | 50.0% | |
| CTGGTTCAAGCACCAATCCA+TGG | - | chr3.2:76344557-76344576 | MS.gene81958:CDS | 50.0% | |
| GCCACGAGATTGCATATGAG+AGG | - | chr3.2:76345665-76345684 | MS.gene81958:CDS | 50.0% | |
| GCCCACATTCACACCCTTTA+AGG | + | chr3.2:76345368-76345387 | None:intergenic | 50.0% | |
| GTACGTTGGCAATGCTTCCT+CGG | + | chr3.2:76344497-76344516 | None:intergenic | 50.0% | |
| GTGCACAAGAGATCGTGTGT+GGG | - | chr3.2:76345938-76345957 | MS.gene81958:CDS | 50.0% | |
| TATCGCTGTCATCGTCTCTG+TGG | + | chr3.2:76345719-76345738 | None:intergenic | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | - | chr3.2:76345820-76345839 | MS.gene81958:CDS | 50.0% | |
| TGTATGGACACGCTCTTGGA+CGG | - | chr3.2:76344582-76344601 | MS.gene81958:CDS | 50.0% | |
| TGTCCATACAGCCCATGGAT+TGG | + | chr3.2:76344572-76344591 | None:intergenic | 50.0% | |
| ! | AGTGCCCGGGCATTGTTATA+TGG | + | chr3.2:76345759-76345778 | None:intergenic | 50.0% |
| ! | CCAACATTCCTCCACTGGTT+TGG | + | chr3.2:76344344-76344363 | None:intergenic | 50.0% |
| ! | TTTTCTGTCAGACGGCAGCA+TGG | - | chr3.2:76345570-76345589 | MS.gene81958:intron | 50.0% |
| !! | GGGTCGGGTTGATATGTTCA+TGG | - | chr3.2:76344654-76344673 | MS.gene81958:CDS | 50.0% |
| !!! | CGAGCCACTTTTCTGTCAGA+CGG | - | chr3.2:76345562-76345581 | MS.gene81958:intron | 50.0% |
| ACGGCTGAGGAGAATAGGCA+TGG | - | chr3.2:76344601-76344620 | MS.gene81958:CDS | 55.0% | |
| AGTGGGTGACATGATCACCG+AGG | - | chr3.2:76344477-76344496 | MS.gene81958:CDS | 55.0% | |
| CCATCATGCATCAAGTGCCC+GGG | + | chr3.2:76345772-76345791 | None:intergenic | 55.0% | |
| CGTGCACAAGAGATCGTGTG+TGG | - | chr3.2:76345937-76345956 | MS.gene81958:CDS | 55.0% | |
| CTTGGACGGCTGAGGAGAAT+AGG | - | chr3.2:76344596-76344615 | MS.gene81958:CDS | 55.0% | |
| GCCAGACTCTTCACTACCGT+CGG | - | chr3.2:76344381-76344400 | MS.gene81958:CDS | 55.0% | |
| GCTAGAGGGTTTGACAAGCG+AGG | - | chr3.2:76345909-76345928 | MS.gene81958:CDS | 55.0% | |
| GCTGCCGTCTGACAGAAAAG+TGG | + | chr3.2:76345569-76345588 | None:intergenic | 55.0% | |
| GGCTTGCACCCAAGATTAGG+AGG | - | chr3.2:76345959-76345978 | MS.gene81958:CDS | 55.0% | |
| GTGGGCTTGCACCCAAGATT+AGG | - | chr3.2:76345956-76345975 | MS.gene81958:CDS | 55.0% | |
| TCCGACGGTAGTGAAGAGTC+TGG | + | chr3.2:76344385-76344404 | None:intergenic | 55.0% | |
| TCGCTGTCATCGTCTCTGTG+GGG | + | chr3.2:76345717-76345736 | None:intergenic | 55.0% | |
| ! | CAGCATGGCTCGACTAGCTA+AGG | - | chr3.2:76345585-76345604 | MS.gene81958:intron | 55.0% |
| ! | GCACCAATCCATGGGCTGTA+TGG | - | chr3.2:76344566-76344585 | MS.gene81958:CDS | 55.0% |
| ! | GCTCGACTAGCTAAGGAGAG+AGG | - | chr3.2:76345592-76345611 | MS.gene81958:intron | 55.0% |
| !! | TCCTCCACTGGTTTGGCTAG+TGG | + | chr3.2:76344337-76344356 | None:intergenic | 55.0% |
| CCCGGGCACTTGATGCATGA+TGG | - | chr3.2:76345769-76345788 | MS.gene81958:CDS | 60.0% | |
| GAGCGTGTCCATACAGCCCA+TGG | + | chr3.2:76344577-76344596 | None:intergenic | 60.0% | |
| GATGGGGTTGGAGACGAGAC+TGG | - | chr3.2:76344538-76344557 | MS.gene81958:CDS | 60.0% | |
| GCCACTAGCCAAACCAGTGG+AGG | - | chr3.2:76344333-76344352 | MS.gene81958:CDS | 60.0% | |
| GCTGCCACTAGCCAAACCAG+TGG | - | chr3.2:76344330-76344349 | MS.gene81958:CDS | 60.0% | |
| GGCTGCCAACATTCCTCCAC+TGG | + | chr3.2:76344349-76344368 | None:intergenic | 60.0% | |
| GGGCTGTATGGACACGCTCT+TGG | - | chr3.2:76344578-76344597 | MS.gene81958:CDS | 60.0% | |
| GACACGCTCTTGGACGGCTG+AGG | - | chr3.2:76344588-76344607 | MS.gene81958:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 76344271 | 76346062 | 76344271 | ID=MS.gene81958 |
| chr3.2 | mRNA | 76344271 | 76346062 | 76344271 | ID=MS.gene81958.t1;Parent=MS.gene81958 |
| chr3.2 | exon | 76345619 | 76346062 | 76345619 | ID=MS.gene81958.t1.exon1;Parent=MS.gene81958.t1 |
| chr3.2 | CDS | 76345619 | 76346062 | 76345619 | ID=cds.MS.gene81958.t1;Parent=MS.gene81958.t1 |
| chr3.2 | exon | 76344271 | 76344828 | 76344271 | ID=MS.gene81958.t1.exon2;Parent=MS.gene81958.t1 |
| chr3.2 | CDS | 76344271 | 76344828 | 76344271 | ID=cds.MS.gene81958.t1;Parent=MS.gene81958.t1 |
| Gene Sequence |
| Protein sequence |
