AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83327

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83327.t1 MTR_2g054880 97.594 374 9 0 1 374 1 374 0.0 772
MS.gene83327.t1 MTR_1g113940 38.870 301 159 10 18 307 3 289 1.15e-55 186
MS.gene83327.t1 MTR_4g119900 37.540 309 172 7 26 333 142 430 2.68e-53 184
MS.gene83327.t1 MTR_4g119900 37.540 309 172 7 26 333 142 430 3.14e-53 184
MS.gene83327.t1 MTR_2g436780 37.217 309 173 8 26 333 144 432 2.01e-52 182
MS.gene83327.t1 MTR_2g436780 37.217 309 173 8 26 333 144 432 2.23e-52 182
MS.gene83327.t1 MTR_6g091770 33.046 348 200 10 26 372 65 380 4.18e-51 175
MS.gene83327.t1 MTR_3g013960 33.136 338 168 13 25 331 255 565 9.54e-40 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83327.t1 AT1G04870 72.346 358 99 0 17 374 26 383 0.0 575
MS.gene83327.t1 AT1G04870 67.857 280 90 0 95 374 1 280 6.06e-152 430
MS.gene83327.t1 AT3G20020 35.655 359 177 7 26 352 83 419 3.56e-62 206
MS.gene83327.t1 AT3G20020 35.655 359 177 7 26 352 83 419 4.61e-62 206
MS.gene83327.t1 AT4G29510 33.923 339 194 8 26 363 72 381 1.65e-53 182
MS.gene83327.t1 AT3G06930 35.905 337 190 12 2 333 121 436 8.90e-53 183
MS.gene83327.t1 AT3G06930 35.905 337 190 12 2 333 121 436 9.16e-53 183
MS.gene83327.t1 AT2G19670 33.434 332 183 9 26 352 48 346 2.53e-52 178
MS.gene83327.t1 AT3G20020 33.148 359 164 8 26 352 83 397 2.59e-52 179
MS.gene83327.t1 AT5G49020 36.893 309 174 10 26 333 151 439 2.78e-51 179
MS.gene83327.t1 AT5G49020 36.893 309 174 10 26 333 149 437 3.07e-51 179
MS.gene83327.t1 AT3G12270 34.234 333 166 11 25 335 244 545 1.70e-41 154

Find 93 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATTGTTTAGGTTGTTT+TGG 0.240104 2.2:+30028572 MS.gene83327:intron
GGTGGTTTGATGTACATTTC+CGG 0.276872 2.2:+30033275 MS.gene83327:CDS
ATTAGCGTAGTCGACTTCTT+TGG 0.288507 2.2:-30028376 None:intergenic
TTCTACTATCCCAGTCCTAA+TGG 0.297541 2.2:-30030444 None:intergenic
TTAGCGTAGTCGACTTCTTT+GGG 0.302924 2.2:-30028375 None:intergenic
GATGAAACAAAAGCCTTCTA+TGG 0.355790 2.2:+30030518 MS.gene83327:CDS
AACACAAAACTGTGTGGATA+TGG 0.358771 2.2:+30033250 MS.gene83327:CDS
GAAGGGAAACCATCGTTTAA+TGG 0.372426 2.2:+30033860 MS.gene83327:CDS
GTGGTTTGATGTACATTTCC+GGG 0.373727 2.2:+30033276 MS.gene83327:CDS
TTGGATGTTGGTGCTGGAAG+TGG 0.397747 2.2:+30028591 MS.gene83327:CDS
AACGCCGCCGGTGGTGGCCG+AGG 0.402656 2.2:+30028342 MS.gene83327:CDS
CTGTGAGATTCAAAAGCATT+CGG 0.404202 2.2:+30033896 MS.gene83327:CDS
GCTCATATCAACACCATAGA+AGG 0.404592 2.2:-30030531 None:intergenic
TCGGAAAACGCCGCCGGTGG+TGG 0.432968 2.2:+30028336 MS.gene83327:CDS
TCATTACAAAATTAACAGTT+AGG 0.435699 2.2:-30033830 None:intergenic
CAGGTTGTTGAGGTTATTGA+GGG 0.437694 2.2:+30028723 MS.gene83327:CDS
ACCAGTCAGCTATGGGTGAT+TGG 0.438081 2.2:+30030483 MS.gene83327:CDS
AAGAACCATGGGCACTTCTT+CGG 0.442033 2.2:+30028317 None:intergenic
CGTTTAATGGAGGTTGAGCT+TGG 0.443414 2.2:+30033873 MS.gene83327:CDS
CTTCATCCACATCAAGTCAT+AGG 0.443890 2.2:+30033130 MS.gene83327:CDS
TCTACTATCCCAGTCCTAAT+GGG 0.449075 2.2:-30030443 None:intergenic
GGCGGTGCCTCGGCCACCAC+CGG 0.450973 2.2:-30028349 None:intergenic
TGGATGTTGGTGCTGGAAGT+GGG 0.452123 2.2:+30028592 MS.gene83327:CDS
GAAGTGGGATTCTTGCTATA+TGG 0.455599 2.2:+30028607 MS.gene83327:CDS
GCATGTGGATGGCACCCATT+AGG 0.455721 2.2:+30030429 MS.gene83327:CDS
GCAGGTTGTTGAGGTTATTG+AGG 0.459237 2.2:+30028722 MS.gene83327:CDS
GACCGCTGGCTCAAACCAAC+AGG 0.460638 2.2:+30029527 MS.gene83327:CDS
GATGTTACATTGCCTGAGAA+AGG 0.461263 2.2:+30028756 MS.gene83327:CDS
AACTCAATCTCATGTTCAGC+TGG 0.461498 2.2:-30033392 None:intergenic
TTCCTCTGCTCCTCAGCAAA+AGG 0.461816 2.2:-30030566 None:intergenic
TCATATGTGCTCGTGACCGC+TGG 0.468854 2.2:+30029513 MS.gene83327:CDS
TGTGAGATTCAAAAGCATTC+GGG 0.473426 2.2:+30033897 MS.gene83327:CDS
CTTTGGGGACGGCGGTGCCT+CGG 0.475277 2.2:-30028359 None:intergenic
GGGCGATTACCAGTCAGCTA+TGG 0.477604 2.2:+30030475 MS.gene83327:CDS
CAAACAAACAAACCTTTCTC+AGG 0.478341 2.2:-30028768 None:intergenic
AGCTCAAGCAGGTGCAAAGA+AGG 0.480270 2.2:+30028632 MS.gene83327:CDS
CTGTACACACTGGGGTCAGC+AGG 0.481201 2.2:+30033439 MS.gene83327:CDS
TGGGATAGTAGAACAAAAGT+TGG 0.503612 2.2:+30030454 MS.gene83327:CDS
CATCAAGTCATAGGAACTGC+TGG 0.510644 2.2:+30033139 MS.gene83327:CDS
CTCCTGTTGGTTTGAGCCAG+CGG 0.511819 2.2:-30029529 None:intergenic
GGTTATTGAGGGTTCTGTTG+AGG 0.518633 2.2:+30028734 MS.gene83327:CDS
AATACTTACATCACTCCTGT+TGG 0.521476 2.2:-30029542 None:intergenic
GCAGAGGAAATACTATCTAC+AGG 0.521867 2.2:+30030580 MS.gene83327:CDS
TGGATGGCACCCATTAGGAC+TGG 0.527259 2.2:+30030434 MS.gene83327:CDS
TGTTATCATCTCTGAATGGA+TGG 0.530239 2.2:+30029454 MS.gene83327:CDS
TACTAACCTTGTCTTTAAAG+TGG 0.532555 2.2:-30028497 None:intergenic
GCTCTCAGATCGTGTTCGTA+TGG 0.535538 2.2:+30028440 MS.gene83327:CDS
GCCAATCACCCATAGCTGAC+TGG 0.536396 2.2:-30030484 None:intergenic
GGCGATTACCAGTCAGCTAT+GGG 0.537653 2.2:+30030476 MS.gene83327:CDS
TAATCTTGAGCAGGTTGTTG+AGG 0.544159 2.2:+30028713 MS.gene83327:CDS
AGGAACTGCTGGTCTAGTAA+AGG 0.544394 2.2:+30033150 MS.gene83327:CDS
GAAATCGAATAATCTTGAGC+AGG 0.548053 2.2:+30028704 MS.gene83327:CDS
GCTATATGGTCAGCTCAAGC+AGG 0.548853 2.2:+30028621 MS.gene83327:CDS
TTTGTAATGAGTCGCTCGAA+GGG 0.553039 2.2:+30033843 MS.gene83327:CDS
ACTTCTTCGGAAAACGCCGC+CGG 0.554022 2.2:+30028330 MS.gene83327:CDS
GGGATAGTAGAACAAAAGTT+GGG 0.555999 2.2:+30030455 MS.gene83327:CDS
CCATCACTCACATGTGTAGG+AGG 0.557201 2.2:-30033801 None:intergenic
TAGTCATGCTCGCATGTGGA+TGG 0.569852 2.2:+30030418 MS.gene83327:CDS
TTGGTGATAGAGAAAGGAGT+AGG 0.571481 2.2:-30028409 None:intergenic
ATCCACATGCGAGCATGACT+AGG 0.578485 2.2:-30030416 None:intergenic
GGATGGCACCCATTAGGACT+GGG 0.582000 2.2:+30030435 MS.gene83327:CDS
TAGCGTAGTCGACTTCTTTG+GGG 0.583467 2.2:-30028374 None:intergenic
GGTGCCTCGGCCACCACCGG+CGG 0.585507 2.2:-30028346 None:intergenic
ATCCTAGTCATGCTCGCATG+TGG 0.586013 2.2:+30030414 MS.gene83327:CDS
TGCCACAGTGGCAGACATTG+AGG 0.587110 2.2:+30033189 MS.gene83327:CDS
TCTTCGGAAAACGCCGCCGG+TGG 0.588314 2.2:+30028333 MS.gene83327:CDS
TGCTTACCAGGGACGAAGTG+AGG 0.588452 2.2:+30033367 MS.gene83327:intron
TGTAGATTACTGTACACACT+GGG 0.591513 2.2:+30033430 MS.gene83327:CDS
AATTTCTGTAGACATCGTTG+TGG 0.599319 2.2:+30033101 MS.gene83327:intron
CAAACACCACTTTAAAGACA+AGG 0.601109 2.2:+30028491 MS.gene83327:CDS
TTGATGTTATCATCTCTGAA+TGG 0.604535 2.2:+30029450 MS.gene83327:CDS
GTGTAGATTACTGTACACAC+TGG 0.606301 2.2:+30033429 MS.gene83327:CDS
GTAGTCGACTTCTTTGGGGA+CGG 0.618495 2.2:-30028370 None:intergenic
TGTTGAAGCTACTAAGATGT+CGG 0.627273 2.2:+30028662 MS.gene83327:CDS
CATGTGTAGGAGGATTTAAG+AGG 0.628125 2.2:-30033791 None:intergenic
TCACCATCACTCACATGTGT+AGG 0.628712 2.2:-30033804 None:intergenic
ACAAAACTGTGTGGATATGG+AGG 0.629006 2.2:+30033253 MS.gene83327:CDS
GGGAAACCATCGTTTAATGG+AGG 0.633476 2.2:+30033863 MS.gene83327:CDS
GTCGACTTCTTTGGGGACGG+CGG 0.634616 2.2:-30028367 None:intergenic
TTCCTCAATGTCTGCCACTG+TGG 0.642512 2.2:-30033191 None:intergenic
TGTGTACAGTAATCTACACT+AGG 0.645957 2.2:-30033425 None:intergenic
GCAGTTCCTATGACTTGATG+TGG 0.646015 2.2:-30033136 None:intergenic
GTAATCTACACTAGGAGCGG+TGG 0.661333 2.2:-30033417 None:intergenic
TGGTGTTGATATGAGCACTT+TGG 0.661843 2.2:+30030538 MS.gene83327:CDS
GTTATCATCTCTGAATGGAT+GGG 0.664829 2.2:+30029455 MS.gene83327:CDS
GCTCAACCTCCATTAAACGA+TGG 0.680084 2.2:-30033869 None:intergenic
CCTCCTACACATGTGAGTGA+TGG 0.685198 2.2:+30033801 MS.gene83327:CDS
ACAGTAATCTACACTAGGAG+CGG 0.702438 2.2:-30033420 None:intergenic
ACGGAGAACACAAAACTGTG+TGG 0.710656 2.2:+30033244 MS.gene83327:CDS
AACTGTGTGGATATGGAGGG+TGG 0.718749 2.2:+30033257 MS.gene83327:CDS
CAAAACTGTGTGGATATGGA+GGG 0.725863 2.2:+30033254 MS.gene83327:CDS
TGACTGTTTGACTGCCACAG+TGG 0.774647 2.2:+30033177 MS.gene83327:CDS
GTAGATTACTGTACACACTG+GGG 0.847696 2.2:+30033431 MS.gene83327:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATGAATATTTCATAA+AGG + chr2.2:30028926-30028945 MS.gene83327:intron 10.0%
!! TTAAAATAGAAAAAATGTAT+TGG + chr2.2:30032210-30032229 MS.gene83327:intron 10.0%
!!! AGTTTTATCATTAAATAAAA+AGG - chr2.2:30031238-30031257 None:intergenic 10.0%
!!! TAAGAAAATATTATTTTTTC+GGG + chr2.2:30029099-30029118 MS.gene83327:intron 10.0%
!!! TATTTTCATAATTTAAAAAG+TGG - chr2.2:30031993-30032012 None:intergenic 10.0%
!!! TTGGAATATATAATTTTTTT+TGG - chr2.2:30032523-30032542 None:intergenic 10.0%
!! AACATTTAACAATTCATATA+AGG - chr2.2:30029367-30029386 None:intergenic 15.0%
!! CATGACATATAATTAATTTA+AGG - chr2.2:30032354-30032373 None:intergenic 15.0%
!! TAACCTAAATTAATTGTTAT+TGG + chr2.2:30031811-30031830 MS.gene83327:intron 15.0%
!! TAATGATAAGAAAATTGTTT+AGG + chr2.2:30028563-30028582 MS.gene83327:intron 15.0%
!! TATAATTAATTTAAGGATTG+TGG - chr2.2:30032347-30032366 None:intergenic 15.0%
!! TATACTATATATGAAAAATG+TGG + chr2.2:30029739-30029758 MS.gene83327:intron 15.0%
!! TTATATGAATTGTTAAATGT+TGG + chr2.2:30029366-30029385 MS.gene83327:intron 15.0%
!! TTATTAAGTGGTTAATTATA+GGG + chr2.2:30029012-30029031 MS.gene83327:intron 15.0%
!!! ATATAGTACTTATTTTTGAA+AGG - chr2.2:30033936-30033955 None:intergenic 15.0%
!! AGAAAAAATGTATTGGAAAA+TGG + chr2.2:30032217-30032236 MS.gene83327:intron 20.0%
!! AGCAATTTGAATATTAATGA+AGG + chr2.2:30033529-30033548 MS.gene83327:intron 20.0%
!! ATAAATCTAATTGTAGACAT+AGG - chr2.2:30033002-30033021 None:intergenic 20.0%
!! ATGTTAGTGTAATTAATCAT+TGG + chr2.2:30033759-30033778 MS.gene83327:intron 20.0%
!! ATTACCTATTTGAAAGTTTA+GGG + chr2.2:30029264-30029283 MS.gene83327:intron 20.0%
!! GTTATTAAGTGGTTAATTAT+AGG + chr2.2:30029011-30029030 MS.gene83327:intron 20.0%
!! TAAATCTAATTGTAGACATA+GGG - chr2.2:30033001-30033020 None:intergenic 20.0%
!! TCATTACAAAATTAACAGTT+AGG - chr2.2:30033833-30033852 None:intergenic 20.0%
!! TGTCCAATAACAATTAATTT+AGG - chr2.2:30031817-30031836 None:intergenic 20.0%
!! TTAACCACAAATTATCAATT+TGG - chr2.2:30029039-30029058 None:intergenic 20.0%
!! TTAAGGAAACAAAAAATAGT+AGG - chr2.2:30032300-30032319 None:intergenic 20.0%
!! TTATTCAATGAATCTGAAAA+AGG + chr2.2:30029168-30029187 MS.gene83327:intron 20.0%
!! TTCATTAATGATACTTCAAT+GGG + chr2.2:30032925-30032944 MS.gene83327:intron 20.0%
!! TTTGTTAATGAACAAAACTT+TGG + chr2.2:30030339-30030358 MS.gene83327:intron 20.0%
!!! ATTTTTACATTGACTTAACA+TGG + chr2.2:30030189-30030208 MS.gene83327:intron 20.0%
!!! CAGTTTTACTATTCTAAAAA+AGG - chr2.2:30031291-30031310 None:intergenic 20.0%
!!! GAAAGGATTTTTTTAACATT+AGG - chr2.2:30030101-30030120 None:intergenic 20.0%
!!! GTTACATAGAATTTTTGTTA+TGG + chr2.2:30030647-30030666 MS.gene83327:intron 20.0%
!!! TATTTTCTTATAATAGTGAC+CGG - chr2.2:30029089-30029108 None:intergenic 20.0%
! AAATCCACTTACATATTGAA+AGG - chr2.2:30031354-30031373 None:intergenic 25.0%
! AAGGAATATTTGCTTATACT+AGG + chr2.2:30029187-30029206 MS.gene83327:intron 25.0%
! AAGTCAATGTAAAAATAGCA+TGG - chr2.2:30030185-30030204 None:intergenic 25.0%
! ACATTGTCAGAATTGAAAAA+GGG - chr2.2:30033685-30033704 None:intergenic 25.0%
! ACTCTATTAAATAGTCAAGA+TGG - chr2.2:30029215-30029234 None:intergenic 25.0%
! AGAATAGAACAGCTAATTTA+TGG - chr2.2:30033585-30033604 None:intergenic 25.0%
! AGGAATATTTGCTTATACTA+GGG + chr2.2:30029188-30029207 MS.gene83327:intron 25.0%
! ATATTCCAAAAAAATTGTGC+AGG + chr2.2:30032534-30032553 MS.gene83327:intron 25.0%
! ATGGTATTTGACGAAATAAA+TGG - chr2.2:30028878-30028897 None:intergenic 25.0%
! CATTGAATAACTTATGTATC+TGG + chr2.2:30029124-30029143 MS.gene83327:intron 25.0%
! CATTGAATAATTGATGTATC+TGG - chr2.2:30029158-30029177 None:intergenic 25.0%
! CTTCATTAATGATACTTCAA+TGG + chr2.2:30032924-30032943 MS.gene83327:intron 25.0%
! GATTACCTATTTGAAAGTTT+AGG + chr2.2:30029263-30029282 MS.gene83327:intron 25.0%
! GGATTATCATGTAAAAATAG+AGG - chr2.2:30030139-30030158 None:intergenic 25.0%
! GTTATTGGACAACTAAAAAT+GGG + chr2.2:30031826-30031845 MS.gene83327:intron 25.0%
! TAAACCCTAAACTTTCAAAT+AGG - chr2.2:30029271-30029290 None:intergenic 25.0%
! TAATTTATGGAACTCATTGA+AGG - chr2.2:30033572-30033591 None:intergenic 25.0%
! TACATTGTCAGAATTGAAAA+AGG - chr2.2:30033686-30033705 None:intergenic 25.0%
! TGTTATTGGACAACTAAAAA+TGG + chr2.2:30031825-30031844 MS.gene83327:intron 25.0%
! TGTTGTTAATTGCAGAAATA+CGG - chr2.2:30030018-30030037 None:intergenic 25.0%
! TTATGTATACTACTACTAAG+TGG - chr2.2:30032483-30032502 None:intergenic 25.0%
! TTATTGGACAACTAAAAATG+GGG + chr2.2:30031827-30031846 MS.gene83327:intron 25.0%
! TTGACTATTTAATAGAGTCA+GGG + chr2.2:30029217-30029236 MS.gene83327:intron 25.0%
!! AAGTGGTAATTTTGAATAGT+TGG - chr2.2:30032466-30032485 None:intergenic 25.0%
!! CATTGAAGTATCATTAATGA+AGG - chr2.2:30032926-30032945 None:intergenic 25.0%
!! GTTTTATGACTTTTATCTAC+AGG + chr2.2:30032896-30032915 MS.gene83327:intron 25.0%
!! TATTTGAAAGTTTAGGGTTT+AGG + chr2.2:30029270-30029289 MS.gene83327:intron 25.0%
!!! AATGATTTGGTAAACTATGA+AGG + chr2.2:30030272-30030291 MS.gene83327:intron 25.0%
!!! ATAATTTACTTTTTCTCGTC+AGG - chr2.2:30031786-30031805 None:intergenic 25.0%
!!! CTTTAGTTTTCAACAGAATA+GGG + chr2.2:30029855-30029874 MS.gene83327:intron 25.0%
!!! GAAAATTGTTTAGGTTGTTT+TGG + chr2.2:30028572-30028591 MS.gene83327:intron 25.0%
!!! TAAGGTTTTGAATTAAATCG+CGG + chr2.2:30028823-30028842 MS.gene83327:intron 25.0%
!!! TAATTTACTTTTTCTCGTCA+GGG - chr2.2:30031785-30031804 None:intergenic 25.0%
!!! TCTTTAGTTTTCAACAGAAT+AGG + chr2.2:30029854-30029873 MS.gene83327:intron 25.0%
!!! TGTTTTTAGAGTACTTGTTA+AGG - chr2.2:30032317-30032336 None:intergenic 25.0%
AAAAAAACCTCTTTCGTTTC+TGG - chr2.2:30029577-30029596 None:intergenic 30.0%
AAAAAACCTCTTTCGTTTCT+GGG - chr2.2:30029576-30029595 None:intergenic 30.0%
AAACCAAAATGAATTCCATG+TGG - chr2.2:30030758-30030777 None:intergenic 30.0%
AAATGTTAAACAGTGTCCTT+AGG + chr2.2:30032171-30032190 MS.gene83327:intron 30.0%
AACCAAAATGAATTCCATGT+GGG - chr2.2:30030757-30030776 None:intergenic 30.0%
AACTTAATTGATACTTCCTC+CGG + chr2.2:30029067-30029086 MS.gene83327:intron 30.0%
AATATTAATGAAGGAGCTGA+TGG + chr2.2:30033538-30033557 MS.gene83327:intron 30.0%
AATGTTAAACAGTGTCCTTA+GGG + chr2.2:30032172-30032191 MS.gene83327:intron 30.0%
ACAAATACAACACTAAACAG+TGG - chr2.2:30032592-30032611 None:intergenic 30.0%
ACAATGAAAAGGCTATAAGA+CGG - chr2.2:30030934-30030953 None:intergenic 30.0%
ACCTTTATAGATGAAAGACA+GGG + chr2.2:30033626-30033645 MS.gene83327:intron 30.0%
ACTGACATGTATCAATGATT+TGG + chr2.2:30030259-30030278 MS.gene83327:intron 30.0%
ACTGTAACACTGTTGTATTA+CGG + chr2.2:30029963-30029982 MS.gene83327:intron 30.0%
AGTGTAATTAATCATTGGAC+AGG + chr2.2:30033764-30033783 MS.gene83327:intron 30.0%
ATACAAACACCAACACTTTA+AGG - chr2.2:30029421-30029440 None:intergenic 30.0%
ATGTTGATGTTCTTGTTCTT+GGG - chr2.2:30030830-30030849 None:intergenic 30.0%
CACAAAATTGACATGTTCTA+TGG + chr2.2:30030713-30030732 MS.gene83327:intron 30.0%
CTAGCTATGATGCAATTTAT+TGG + chr2.2:30032839-30032858 MS.gene83327:intron 30.0%
CTTGACTATTTAATAGAGTC+AGG + chr2.2:30029216-30029235 MS.gene83327:intron 30.0%
GGTTAATCAGTATTGTTAAG+TGG + chr2.2:30029876-30029895 MS.gene83327:intron 30.0%
GTTAATGAACAAAACTTTGG+TGG + chr2.2:30030342-30030361 MS.gene83327:intron 30.0%
GTTATAGCACTAATGCTTAA+GGG + chr2.2:30031082-30031101 MS.gene83327:intron 30.0%
TAATCAGTATTGTTAAGTGG+TGG + chr2.2:30029879-30029898 MS.gene83327:intron 30.0%
TACCTTTATAGATGAAAGAC+AGG + chr2.2:30033625-30033644 MS.gene83327:intron 30.0%
TAGCATAGCACATTTGATAT+AGG - chr2.2:30032702-30032721 None:intergenic 30.0%
TATTGGACAACTAAAAATGG+GGG + chr2.2:30031828-30031847 MS.gene83327:intron 30.0%
TCTGACCAAAAATACAATAG+CGG - chr2.2:30031172-30031191 None:intergenic 30.0%
TCTGCTTCATGAAAATGAAA+TGG + chr2.2:30030297-30030316 MS.gene83327:intron 30.0%
TGAAATCATCAAGAGAAAGT+TGG - chr2.2:30033025-30033044 None:intergenic 30.0%
TGACTATGATCTCACTTTAA+TGG + chr2.2:30032862-30032881 MS.gene83327:intron 30.0%
TTAGTATCCTTAACTGAACT+GGG + chr2.2:30028514-30028533 MS.gene83327:intron 30.0%
TTGATGTTATCATCTCTGAA+TGG + chr2.2:30029450-30029469 MS.gene83327:CDS 30.0%
! AATTAGGTTTTTCATGCAAG+TGG - chr2.2:30030869-30030888 None:intergenic 30.0%
! ACCAGAAAATGGATAGTTTT+AGG + chr2.2:30031207-30031226 MS.gene83327:intron 30.0%
! CTTTCATCTATAAAGGTACA+AGG - chr2.2:30033623-30033642 None:intergenic 30.0%
! GAATGAAGTACTTCTGAATT+AGG - chr2.2:30030885-30030904 None:intergenic 30.0%
! GACTAGTTGAAATAAAACTG+AGG - chr2.2:30031384-30031403 None:intergenic 30.0%
! TACTAACCTTGTCTTTAAAG+TGG - chr2.2:30028500-30028519 None:intergenic 30.0%
! TCATACTTTCTGTGATAATG+TGG + chr2.2:30033659-30033678 MS.gene83327:intron 30.0%
!! ATAGAGGTTTTGTGTTATGA+AGG - chr2.2:30030123-30030142 None:intergenic 30.0%
!! CCAGAAAATGGATAGTTTTA+GGG + chr2.2:30031208-30031227 MS.gene83327:intron 30.0%
!! GTTCTAGCTTTAAGTTTGTA+AGG + chr2.2:30028805-30028824 MS.gene83327:intron 30.0%
!! TTCTTTTTGGTGATAGAGAA+AGG - chr2.2:30028418-30028437 None:intergenic 30.0%
!!! AGCTAGGAATTTTAAGTTGT+GGG + chr2.2:30031888-30031907 MS.gene83327:intron 30.0%
!!! ATTTTGGTTTGATTGTCGTA+CGG + chr2.2:30030768-30030787 MS.gene83327:intron 30.0%
!!! TAGTTGGTTCATGTTTTAGT+TGG - chr2.2:30032450-30032469 None:intergenic 30.0%
!!! TCTAGTTTTTCAAATGAGTG+AGG - chr2.2:30029654-30029673 None:intergenic 30.0%
AACACAAAACTGTGTGGATA+TGG + chr2.2:30033250-30033269 MS.gene83327:CDS 35.0%
AACCAAAAATCTGAGCAACA+GGG + chr2.2:30031510-30031529 MS.gene83327:intron 35.0%
AACTAAAAATGGGGGACTAA+GGG + chr2.2:30031836-30031855 MS.gene83327:intron 35.0%
AATACAACACTAAACAGTGG+CGG - chr2.2:30032589-30032608 None:intergenic 35.0%
AATACTTACATCACTCCTGT+TGG - chr2.2:30029545-30029564 None:intergenic 35.0%
AATTTCTGTAGACATCGTTG+TGG + chr2.2:30033101-30033120 MS.gene83327:intron 35.0%
ACAAGAACATCAACATGTGT+TGG + chr2.2:30030834-30030853 MS.gene83327:intron 35.0%
ACACAGTTGAACTAGAATGA+AGG - chr2.2:30033735-30033754 None:intergenic 35.0%
ACCAAAATGAATTCCATGTG+GGG - chr2.2:30030756-30030775 None:intergenic 35.0%
ACCCTGTCTTTCATCTATAA+AGG - chr2.2:30033630-30033649 None:intergenic 35.0%
ATACATGTCAGTATCTCTGT+TGG - chr2.2:30030251-30030270 None:intergenic 35.0%
ATAGCTATAATGCCCATACA+AGG - chr2.2:30033315-30033334 None:intergenic 35.0%
CAAACAAACAAACCTTTCTC+AGG - chr2.2:30028771-30028790 None:intergenic 35.0%
CATGTTGATGTTCTTGTTCT+TGG - chr2.2:30030831-30030850 None:intergenic 35.0%
CGTTATAGCACTAATGCTTA+AGG + chr2.2:30031081-30031100 MS.gene83327:intron 35.0%
CTGTTTCCATATCAAGATAG+AGG + chr2.2:30032743-30032762 MS.gene83327:intron 35.0%
GAAATCGAATAATCTTGAGC+AGG + chr2.2:30028704-30028723 MS.gene83327:CDS 35.0%
GATGAAACAAAAGCCTTCTA+TGG + chr2.2:30030518-30030537 MS.gene83327:CDS 35.0%
GCAACCTTTCAATATGTAAG+TGG + chr2.2:30031347-30031366 MS.gene83327:intron 35.0%
GGGATAGTAGAACAAAAGTT+GGG + chr2.2:30030455-30030474 MS.gene83327:CDS 35.0%
GTAATACAACAGTGTTACAG+TGG - chr2.2:30029964-30029983 None:intergenic 35.0%
GTAGCAGAAATACCAGAAAA+TGG + chr2.2:30031196-30031215 MS.gene83327:intron 35.0%
GTGGAACAAGGATAGAAATT+AGG - chr2.2:30031132-30031151 None:intergenic 35.0%
GTTAATTGCAGAAATACGGA+TGG - chr2.2:30030014-30030033 None:intergenic 35.0%
GTTAGTATCCTTAACTGAAC+TGG + chr2.2:30028513-30028532 MS.gene83327:intron 35.0%
GTTATCATCTCTGAATGGAT+GGG + chr2.2:30029455-30029474 MS.gene83327:CDS 35.0%
TATAAGACGGTTTCTGAACT+TGG - chr2.2:30030921-30030940 None:intergenic 35.0%
TATCAAGATAGAGGTTGCAA+TGG + chr2.2:30032752-30032771 MS.gene83327:intron 35.0%
TCTGAACTTGGTTTATGAGT+GGG - chr2.2:30030909-30030928 None:intergenic 35.0%
TGGGATAGTAGAACAAAAGT+TGG + chr2.2:30030454-30030473 MS.gene83327:CDS 35.0%
TGTAGATTACTGTACACACT+GGG + chr2.2:30033430-30033449 MS.gene83327:CDS 35.0%
TGTGTACAGTAATCTACACT+AGG - chr2.2:30033428-30033447 None:intergenic 35.0%
TGTTATCATCTCTGAATGGA+TGG + chr2.2:30029454-30029473 MS.gene83327:CDS 35.0%
TGTTGAAGCTACTAAGATGT+CGG + chr2.2:30028662-30028681 MS.gene83327:CDS 35.0%
TTACCTTCATTTAGTGTCAG+TGG + chr2.2:30031862-30031881 MS.gene83327:intron 35.0%
TTCACTCTTGCACAATGAAA+AGG - chr2.2:30030945-30030964 None:intergenic 35.0%
TTCTGAACTTGGTTTATGAG+TGG - chr2.2:30030910-30030929 None:intergenic 35.0%
TTGCAACCTCTATCTTGATA+TGG - chr2.2:30032752-30032771 None:intergenic 35.0%
TTGTATGGGCATTATAGCTA+TGG + chr2.2:30033314-30033333 MS.gene83327:intron 35.0%
TTTCCTGTTTATGCTTACCA+GGG + chr2.2:30033356-30033375 MS.gene83327:intron 35.0%
TTTCGTCAAATACCATGACT+AGG + chr2.2:30028882-30028901 MS.gene83327:intron 35.0%
TTTCTTATAATAGTGACCGG+AGG - chr2.2:30029086-30029105 None:intergenic 35.0%
! AGCATGGTAATGTGCAAATT+GGG - chr2.2:30030169-30030188 None:intergenic 35.0%
! CAAACACCACTTTAAAGACA+AGG + chr2.2:30028491-30028510 MS.gene83327:CDS 35.0%
! CACTTTTATACACTACAGCA+TGG - chr2.2:30030795-30030814 None:intergenic 35.0%
! CCCTAAAACTATCCATTTTC+TGG - chr2.2:30031211-30031230 None:intergenic 35.0%
! CTTTTCTCTGTCAATAACCA+CGG + chr2.2:30033225-30033244 MS.gene83327:CDS 35.0%
! GGGACTAGATTGTTATTAAG+TGG + chr2.2:30029000-30029019 MS.gene83327:intron 35.0%
! GGGTCCAAATTGATAATTTG+TGG + chr2.2:30029032-30029051 MS.gene83327:intron 35.0%
! GTGATTTTTCATAGAGCAGT+TGG + chr2.2:30031722-30031741 MS.gene83327:intron 35.0%
! TAGCATGGTAATGTGCAAAT+TGG - chr2.2:30030170-30030189 None:intergenic 35.0%
! TTTTCAAATGAGTGAGGAGT+AGG - chr2.2:30029648-30029667 None:intergenic 35.0%
!! CTGTGAGATTCAAAAGCATT+CGG + chr2.2:30033896-30033915 MS.gene83327:CDS 35.0%
!! GGTTTTGTGTTATGAAGGAA+AGG - chr2.2:30030118-30030137 None:intergenic 35.0%
!! TGTGAGATTCAAAAGCATTC+GGG + chr2.2:30033897-30033916 MS.gene83327:CDS 35.0%
!! TTTAGGGTTTAGGACTAGTT+TGG + chr2.2:30029280-30029299 MS.gene83327:intron 35.0%
!!! AGCTGCTTTTTTTCGGTTTT+TGG - chr2.2:30031584-30031603 None:intergenic 35.0%
!!! CTAGGAATTTTAAGTTGTGG+GGG + chr2.2:30031890-30031909 MS.gene83327:intron 35.0%
!!! GAGCTAGGAATTTTAAGTTG+TGG + chr2.2:30031887-30031906 MS.gene83327:intron 35.0%
!!! GATCTGAGAGCATTTCTTTT+TGG - chr2.2:30028431-30028450 None:intergenic 35.0%
!!! GCTAGGAATTTTAAGTTGTG+GGG + chr2.2:30031889-30031908 MS.gene83327:intron 35.0%
!!! GCTATTGTATTTTTGGTCAG+AGG + chr2.2:30031171-30031190 MS.gene83327:intron 35.0%
!!! GTTTAGGTTGTTTTGGATGT+TGG + chr2.2:30028579-30028598 MS.gene83327:intron 35.0%
!!! TGTTCTCAGCTGCTTTTTTT+CGG - chr2.2:30031591-30031610 None:intergenic 35.0%
AAAAAGCAGCTGAGAACATG+TGG + chr2.2:30031593-30031612 MS.gene83327:intron 40.0%
AAAAGCAGCTGAGAACATGT+GGG + chr2.2:30031594-30031613 MS.gene83327:intron 40.0%
AACTCAATCTCATGTTCAGC+TGG - chr2.2:30033395-30033414 None:intergenic 40.0%
AAGATGCTCTGACCTTGTAT+GGG + chr2.2:30033300-30033319 MS.gene83327:intron 40.0%
AATTCCAAAGCCACTTACAC+AGG - chr2.2:30031035-30031054 None:intergenic 40.0%
ACAAAACTGTGTGGATATGG+AGG + chr2.2:30033253-30033272 MS.gene83327:CDS 40.0%
ACAAGCCAGCACATAATGTA+GGG - chr2.2:30030688-30030707 None:intergenic 40.0%
ACAGTAATCTACACTAGGAG+CGG - chr2.2:30033423-30033442 None:intergenic 40.0%
ACCAAAAATCTGAGCAACAG+GGG + chr2.2:30031511-30031530 MS.gene83327:intron 40.0%
AGAACATCAACATGTGTTGG+TGG + chr2.2:30030837-30030856 MS.gene83327:intron 40.0%
AGTCTCCTCTGATGAGATTT+GGG - chr2.2:30032968-30032987 None:intergenic 40.0%
AGTTTATCCGATAGTCTGTG+AGG + chr2.2:30028979-30028998 MS.gene83327:intron 40.0%
ATACGGATGGCAGAAAAAAG+CGG - chr2.2:30030001-30030020 None:intergenic 40.0%
ATCCTTAACTGAACTGGGTT+TGG + chr2.2:30028519-30028538 MS.gene83327:intron 40.0%
ATGAATTCCATGTGGGGATT+AGG - chr2.2:30030750-30030769 None:intergenic 40.0%
ATGTGCAAATTGGGGTAGTT+AGG - chr2.2:30030160-30030179 None:intergenic 40.0%
CAAAACTGTGTGGATATGGA+GGG + chr2.2:30033254-30033273 MS.gene83327:CDS 40.0%
CAACTAAAAATGGGGGACTA+AGG + chr2.2:30031835-30031854 MS.gene83327:intron 40.0%
CAATAATGCACCTGTGTAAG+TGG + chr2.2:30031022-30031041 MS.gene83327:intron 40.0%
CAGCAAAGTTCATCATTGCA+TGG - chr2.2:30030994-30031013 None:intergenic 40.0%
CAGGTTGTTGAGGTTATTGA+GGG + chr2.2:30028723-30028742 MS.gene83327:CDS 40.0%
CATGTGTAGGAGGATTTAAG+AGG - chr2.2:30033794-30033813 None:intergenic 40.0%
CCAAAAGTAGAGGCAATTCA+CGG - chr2.2:30032778-30032797 None:intergenic 40.0%
CTATCCTTGTTCCACTGTAA+GGG + chr2.2:30031137-30031156 MS.gene83327:intron 40.0%
CTGTGATTGCCTTAAAGTGT+TGG + chr2.2:30029409-30029428 MS.gene83327:intron 40.0%
CTTCATCCACATCAAGTCAT+AGG + chr2.2:30033130-30033149 MS.gene83327:CDS 40.0%
GAACCAAAAATCTGAGCAAC+AGG + chr2.2:30031509-30031528 MS.gene83327:intron 40.0%
GAAGGGAAACCATCGTTTAA+TGG + chr2.2:30033860-30033879 MS.gene83327:CDS 40.0%
GATGGACACATCACTTATTG+AGG + chr2.2:30032668-30032687 MS.gene83327:intron 40.0%
GATGTTACATTGCCTGAGAA+AGG + chr2.2:30028756-30028775 MS.gene83327:CDS 40.0%
GCAGAGGAAATACTATCTAC+AGG + chr2.2:30030580-30030599 MS.gene83327:CDS 40.0%
GCATTTGTCACCAAAAGTAG+AGG - chr2.2:30032788-30032807 None:intergenic 40.0%
GCTCATATCAACACCATAGA+AGG - chr2.2:30030534-30030553 None:intergenic 40.0%
GGCAATCACAGAATACACAA+AGG - chr2.2:30029400-30029419 None:intergenic 40.0%
GGTGGTTTGATGTACATTTC+CGG + chr2.2:30033275-30033294 MS.gene83327:CDS 40.0%
GTAATGTGCTGGAAATAGCA+TGG - chr2.2:30030229-30030248 None:intergenic 40.0%
GTAGATTACTGTACACACTG+GGG + chr2.2:30033431-30033450 MS.gene83327:CDS 40.0%
GTGGTTTGATGTACATTTCC+GGG + chr2.2:30033276-30033295 MS.gene83327:CDS 40.0%
GTGTAGATTACTGTACACAC+TGG + chr2.2:30033429-30033448 MS.gene83327:CDS 40.0%
GTTTATCCGATAGTCTGTGA+GGG + chr2.2:30028980-30028999 MS.gene83327:intron 40.0%
GTTTCCTGTTTATGCTTACC+AGG + chr2.2:30033355-30033374 MS.gene83327:intron 40.0%
TAAGATGCTCTGACCTTGTA+TGG + chr2.2:30033299-30033318 MS.gene83327:intron 40.0%
TAATCTTGAGCAGGTTGTTG+AGG + chr2.2:30028713-30028732 MS.gene83327:CDS 40.0%
TACAAGCCAGCACATAATGT+AGG - chr2.2:30030689-30030708 None:intergenic 40.0%
TACGCAAAACCTTGATGTTG+CGG + chr2.2:30029308-30029327 MS.gene83327:intron 40.0%
TCATCATTGCATGGAAGCAA+GGG - chr2.2:30030985-30031004 None:intergenic 40.0%
TCCAAAAAAATTGTGCAGGC+AGG + chr2.2:30032538-30032557 MS.gene83327:intron 40.0%
TCCTTAACTGAACTGGGTTT+GGG + chr2.2:30028520-30028539 MS.gene83327:intron 40.0%
TCTACTATCCCAGTCCTAAT+GGG - chr2.2:30030446-30030465 None:intergenic 40.0%
TCTATCCTTGTTCCACTGTA+AGG + chr2.2:30031136-30031155 MS.gene83327:intron 40.0%
TGAACTAGAATGAAGGTCAC+AGG - chr2.2:30033728-30033747 None:intergenic 40.0%
TGCAATGATGAACTTTGCTG+TGG + chr2.2:30030994-30031013 MS.gene83327:intron 40.0%
TTCATCATTGCATGGAAGCA+AGG - chr2.2:30030986-30031005 None:intergenic 40.0%
TTCTACTATCCCAGTCCTAA+TGG - chr2.2:30030447-30030466 None:intergenic 40.0%
TTCTCTTTACCAATGCCCTA+AGG - chr2.2:30032190-30032209 None:intergenic 40.0%
TTGAGTAGAAGAAAGAGCTG+TGG - chr2.2:30031554-30031573 None:intergenic 40.0%
TTTCTTCCCAGAAACGAAAG+AGG + chr2.2:30029567-30029586 MS.gene83327:intron 40.0%
TTTGTAATGAGTCGCTCGAA+GGG + chr2.2:30033843-30033862 MS.gene83327:CDS 40.0%
! AGCAGCCGCTATTGTATTTT+TGG + chr2.2:30031164-30031183 MS.gene83327:intron 40.0%
! ATTAGCGTAGTCGACTTCTT+TGG - chr2.2:30028379-30028398 None:intergenic 40.0%
! GAACATCAACATGTGTTGGT+GGG + chr2.2:30030838-30030857 MS.gene83327:intron 40.0%
! GAAGTGGGATTCTTGCTATA+TGG + chr2.2:30028607-30028626 MS.gene83327:CDS 40.0%
! GCATGGTAATGTGCAAATTG+GGG - chr2.2:30030168-30030187 None:intergenic 40.0%
! TCCCCACATGGAATTCATTT+TGG + chr2.2:30030752-30030771 MS.gene83327:intron 40.0%
! TTAGCGTAGTCGACTTCTTT+GGG - chr2.2:30028378-30028397 None:intergenic 40.0%
! TTGGTGATAGAGAAAGGAGT+AGG - chr2.2:30028412-30028431 None:intergenic 40.0%
! TTTTGTAATGAGTCGCTCGA+AGG + chr2.2:30033842-30033861 MS.gene83327:CDS 40.0%
!! AGTTGATAGTGTCCTAGTCA+TGG - chr2.2:30028897-30028916 None:intergenic 40.0%
!! TATCTCTGTTGGTAATGTGC+TGG - chr2.2:30030240-30030259 None:intergenic 40.0%
!! TGGTGTTGATATGAGCACTT+TGG + chr2.2:30030538-30030557 MS.gene83327:CDS 40.0%
!!! ACCTGCCTGCACAATTTTTT+TGG - chr2.2:30032542-30032561 None:intergenic 40.0%
AAACAGTGTCCTTAGGGCAT+TGG + chr2.2:30032178-30032197 MS.gene83327:intron 45.0%
ACCCAAACCCAGTTCAGTTA+AGG - chr2.2:30028524-30028543 None:intergenic 45.0%
ACGGAGAACACAAAACTGTG+TGG + chr2.2:30033244-30033263 MS.gene83327:CDS 45.0%
AGGACATGTTGAAAGGGAGT+TGG - chr2.2:30031417-30031436 None:intergenic 45.0%
ATCAGCCCTACATTATGTGC+TGG + chr2.2:30030680-30030699 MS.gene83327:intron 45.0%
ATGGAACTCATTGAAGGCAG+TGG - chr2.2:30033566-30033585 None:intergenic 45.0%
ATGGAGGAGGACATGTTGAA+AGG - chr2.2:30031424-30031443 None:intergenic 45.0%
ATGTCCCTTACAGTGGAACA+AGG - chr2.2:30031144-30031163 None:intergenic 45.0%
ATGTTGAAAGGGAGTTGGGA+TGG - chr2.2:30031412-30031431 None:intergenic 45.0%
CAAACTTTGCCATGCTACAG+TGG + chr2.2:30032630-30032649 MS.gene83327:intron 45.0%
CAATTGTTGCCGCAACATCA+AGG - chr2.2:30029320-30029339 None:intergenic 45.0%
CAGTCTCCTCTGATGAGATT+TGG - chr2.2:30032969-30032988 None:intergenic 45.0%
CATCAAGTCATAGGAACTGC+TGG + chr2.2:30033139-30033158 MS.gene83327:CDS 45.0%
CCTTCATTTAGTGTCAGTGG+CGG + chr2.2:30031865-30031884 MS.gene83327:intron 45.0%
CGTTTAATGGAGGTTGAGCT+TGG + chr2.2:30033873-30033892 MS.gene83327:CDS 45.0%
CTCTGATGAGATTTGGGCAT+GGG - chr2.2:30032962-30032981 None:intergenic 45.0%
GAACAATCCTAATCCCCACA+TGG + chr2.2:30030740-30030759 MS.gene83327:intron 45.0%
GAATGAAGGTCACAGGCTAT+AGG - chr2.2:30033721-30033740 None:intergenic 45.0%
GAGATATGTCAGAGACTCAC+TGG - chr2.2:30031449-30031468 None:intergenic 45.0%
GCAGGTTGTTGAGGTTATTG+AGG + chr2.2:30028722-30028741 MS.gene83327:CDS 45.0%
GCAGTTCCTATGACTTGATG+TGG - chr2.2:30033139-30033158 None:intergenic 45.0%
GCATGCTGTTCTAATCTTCG+CGG - chr2.2:30031485-30031504 None:intergenic 45.0%
GCTCAACCTCCATTAAACGA+TGG - chr2.2:30033872-30033891 None:intergenic 45.0%
GGACATGTTGAAAGGGAGTT+GGG - chr2.2:30031416-30031435 None:intergenic 45.0%
GGGAAACCATCGTTTAATGG+AGG + chr2.2:30033863-30033882 MS.gene83327:CDS 45.0%
GGTTATTGAGGGTTCTGTTG+AGG + chr2.2:30028734-30028753 MS.gene83327:CDS 45.0%
GTGCAATGCAAACAAGCAGT+AGG + chr2.2:30031694-30031713 MS.gene83327:intron 45.0%
GTGCTGGAAATAGCATGGTA+AGG - chr2.2:30030224-30030243 None:intergenic 45.0%
TAGCTCAGCTGGAAAATGCT+GGG + chr2.2:30031664-30031683 MS.gene83327:intron 45.0%
TCACCATCACTCACATGTGT+AGG - chr2.2:30033807-30033826 None:intergenic 45.0%
TCTAGTCCCTCACAGACTAT+CGG - chr2.2:30028989-30029008 None:intergenic 45.0%
TCTTCGCGGTGTTCTTCTAA+AGG - chr2.2:30031471-30031490 None:intergenic 45.0%
TGCAAACAAGCAGTAGGTGT+AGG + chr2.2:30031700-30031719 MS.gene83327:intron 45.0%
TGGAGGAGGACATGTTGAAA+GGG - chr2.2:30031423-30031442 None:intergenic 45.0%
TGGTATGGTTGCAACTCTGA+TGG + chr2.2:30032650-30032669 MS.gene83327:intron 45.0%
TTTGCCATGCTACAGTGGTA+TGG + chr2.2:30032635-30032654 MS.gene83327:intron 45.0%
! AAGCAAGGGCTTTTGGATCA+AGG - chr2.2:30030971-30030990 None:intergenic 45.0%
! AGCAAGGGCTTTTGGATCAA+GGG - chr2.2:30030970-30030989 None:intergenic 45.0%
! AGGAACTGCTGGTCTAGTAA+AGG + chr2.2:30033150-30033169 MS.gene83327:CDS 45.0%
! CCGTGAATTGCCTCTACTTT+TGG + chr2.2:30032775-30032794 MS.gene83327:intron 45.0%
! TAGCGTAGTCGACTTCTTTG+GGG - chr2.2:30028377-30028396 None:intergenic 45.0%
! TTTGGCAAAGCCTTTTGCTG+AGG + chr2.2:30030556-30030575 MS.gene83327:CDS 45.0%
!! ACACAGTTTTGTGTTCTCCG+TGG - chr2.2:30033245-30033264 None:intergenic 45.0%
!! TCAAGAGCGCTGTCAAATTG+AGG + chr2.2:30031058-30031077 MS.gene83327:intron 45.0%
!!! GTTGTTTTGGATGTTGGTGC+TGG + chr2.2:30028585-30028604 MS.gene83327:CDS 45.0%
!! AAATTAAAATATGTATAAAT+TGG - chr2.2:30033086-30033105 None:intergenic 5.0%
!!! ATAAGAAAATATTATTTTTT+CGG + chr2.2:30029098-30029117 MS.gene83327:intron 5.0%
!!! TTTAAAAATATTTATTTTGT+AGG + chr2.2:30030390-30030409 MS.gene83327:intron 5.0%
AAAATCTGAGCAACAGGGGC+AGG + chr2.2:30031515-30031534 MS.gene83327:intron 50.0%
AAATCTGAGCAACAGGGGCA+GGG + chr2.2:30031516-30031535 MS.gene83327:intron 50.0%
AACTGTGTGGATATGGAGGG+TGG + chr2.2:30033257-30033276 MS.gene83327:CDS 50.0%
ACCAGTCAGCTATGGGTGAT+TGG + chr2.2:30030483-30030502 MS.gene83327:CDS 50.0%
AGCCACTCACAACACTGTGA+GGG - chr2.2:30032566-30032585 None:intergenic 50.0%
AGCTCAAGCAGGTGCAAAGA+AGG + chr2.2:30028632-30028651 MS.gene83327:CDS 50.0%
AGCTCAGCTGGAAAATGCTG+GGG + chr2.2:30031665-30031684 MS.gene83327:intron 50.0%
ATAGAGCAGTTGGTTGCACG+AGG + chr2.2:30031732-30031751 MS.gene83327:intron 50.0%
ATCCACATGCGAGCATGACT+AGG - chr2.2:30030419-30030438 None:intergenic 50.0%
ATCCTAGTCATGCTCGCATG+TGG + chr2.2:30030414-30030433 MS.gene83327:CDS 50.0%
CCATCACTCACATGTGTAGG+AGG - chr2.2:30033804-30033823 None:intergenic 50.0%
CCATGCCCAAATCTCATCAG+AGG + chr2.2:30032960-30032979 MS.gene83327:intron 50.0%
CCGCCACTGACACTAAATGA+AGG - chr2.2:30031868-30031887 None:intergenic 50.0%
CCTCCTACACATGTGAGTGA+TGG + chr2.2:30033801-30033820 MS.gene83327:CDS 50.0%
CCTCTGATGAGATTTGGGCA+TGG - chr2.2:30032963-30032982 None:intergenic 50.0%
CGCACAGCCATTTCTCTGTT+CGG - chr2.2:30031643-30031662 None:intergenic 50.0%
CGTCCCTGGTAAGCATAAAC+AGG - chr2.2:30033362-30033381 None:intergenic 50.0%
CTAGCTCAGCTGGAAAATGC+TGG + chr2.2:30031663-30031682 MS.gene83327:intron 50.0%
CTGGAAAATGCTGGGGTTTG+CGG + chr2.2:30031672-30031691 MS.gene83327:intron 50.0%
GCAACCATACCACTGTAGCA+TGG - chr2.2:30032642-30032661 None:intergenic 50.0%
GCTATATGGTCAGCTCAAGC+AGG + chr2.2:30028621-30028640 MS.gene83327:CDS 50.0%
GCTCTCAGATCGTGTTCGTA+TGG + chr2.2:30028440-30028459 MS.gene83327:CDS 50.0%
GGCGATTACCAGTCAGCTAT+GGG + chr2.2:30030476-30030495 MS.gene83327:CDS 50.0%
GTAATCTACACTAGGAGCGG+TGG - chr2.2:30033420-30033439 None:intergenic 50.0%
GTATGCGCCGAACAGAGAAA+TGG + chr2.2:30031633-30031652 MS.gene83327:intron 50.0%
TAGTCATGCTCGCATGTGGA+TGG + chr2.2:30030418-30030437 MS.gene83327:CDS 50.0%
TGACTGTTTGACTGCCACAG+TGG + chr2.2:30033177-30033196 MS.gene83327:CDS 50.0%
TGCACCTGTGTAAGTGGCTT+TGG + chr2.2:30031028-30031047 MS.gene83327:intron 50.0%
TGTCAGAGACTCACTGGAGA+TGG - chr2.2:30031443-30031462 None:intergenic 50.0%
TTCCTCAATGTCTGCCACTG+TGG - chr2.2:30033194-30033213 None:intergenic 50.0%
TTCCTCTGCTCCTCAGCAAA+AGG - chr2.2:30030569-30030588 None:intergenic 50.0%
TTGAAAGGGAGTTGGGATGG+AGG - chr2.2:30031409-30031428 None:intergenic 50.0%
! CAAGGTCAGAGCATCTTACC+CGG - chr2.2:30033297-30033316 None:intergenic 50.0%
! GCAAGGGCTTTTGGATCAAG+GGG - chr2.2:30030969-30030988 None:intergenic 50.0%
! GCCCCTGTTGCTCAGATTTT+TGG - chr2.2:30031515-30031534 None:intergenic 50.0%
! GTAGTCGACTTCTTTGGGGA+CGG - chr2.2:30028373-30028392 None:intergenic 50.0%
! TCAACATGTGTTGGTGGGTC+AGG + chr2.2:30030843-30030862 MS.gene83327:intron 50.0%
! TGCATGGAAGCAAGGGCTTT+TGG - chr2.2:30030978-30030997 None:intergenic 50.0%
!! TGGATGTTGGTGCTGGAAGT+GGG + chr2.2:30028592-30028611 MS.gene83327:CDS 50.0%
!! TTGGATGTTGGTGCTGGAAG+TGG + chr2.2:30028591-30028610 MS.gene83327:CDS 50.0%
AAAGGGAGTTGGGATGGAGG+AGG - chr2.2:30031406-30031425 None:intergenic 55.0%
AATCTGAGCAACAGGGGCAG+GGG + chr2.2:30031517-30031536 MS.gene83327:intron 55.0%
ACTTCTTCGGAAAACGCCGC+CGG + chr2.2:30028330-30028349 MS.gene83327:CDS 55.0%
AGACTCACTGGAGATGGAGG+AGG - chr2.2:30031437-30031456 None:intergenic 55.0%
CAGAGACTCACTGGAGATGG+AGG - chr2.2:30031440-30031459 None:intergenic 55.0%
GAGCCACTCACAACACTGTG+AGG - chr2.2:30032567-30032586 None:intergenic 55.0%
GCATGTGGATGGCACCCATT+AGG + chr2.2:30030429-30030448 MS.gene83327:CDS 55.0%
GCCAATCACCCATAGCTGAC+TGG - chr2.2:30030487-30030506 None:intergenic 55.0%
GGATGGCACCCATTAGGACT+GGG + chr2.2:30030435-30030454 MS.gene83327:CDS 55.0%
GGCTGCTATGTCCCTTACAG+TGG - chr2.2:30031151-30031170 None:intergenic 55.0%
GGGCGATTACCAGTCAGCTA+TGG + chr2.2:30030475-30030494 MS.gene83327:CDS 55.0%
TCATATGTGCTCGTGACCGC+TGG + chr2.2:30029513-30029532 MS.gene83327:CDS 55.0%
TGCCACAGTGGCAGACATTG+AGG + chr2.2:30033189-30033208 MS.gene83327:CDS 55.0%
TGCCCTCACAGTGTTGTGAG+TGG + chr2.2:30032561-30032580 MS.gene83327:intron 55.0%
TGCTTACCAGGGACGAAGTG+AGG + chr2.2:30033367-30033386 MS.gene83327:intron 55.0%
TGGATGGCACCCATTAGGAC+TGG + chr2.2:30030434-30030453 MS.gene83327:CDS 55.0%
! AGCCTTTTGCTGAGGAGCAG+AGG + chr2.2:30030564-30030583 MS.gene83327:CDS 55.0%
! TTAGTGTCAGTGGCGGAGCT+AGG + chr2.2:30031872-30031891 MS.gene83327:intron 55.0%
!! CTCCTGTTGGTTTGAGCCAG+CGG - chr2.2:30029532-30029551 None:intergenic 55.0%
CTGGATCCTCACTTCGTCCC+TGG - chr2.2:30033376-30033395 None:intergenic 60.0%
CTGTACACACTGGGGTCAGC+AGG + chr2.2:30033439-30033458 MS.gene83327:CDS 60.0%
! GTCGACTTCTTTGGGGACGG+CGG - chr2.2:30028370-30028389 None:intergenic 60.0%
!! GACCGCTGGCTCAAACCAAC+AGG + chr2.2:30029527-30029546 MS.gene83327:CDS 60.0%
TCTTCGGAAAACGCCGCCGG+TGG + chr2.2:30028333-30028352 MS.gene83327:CDS 65.0%
TGGCTGTGCGCTAGCTCAGC+TGG + chr2.2:30031653-30031672 MS.gene83327:intron 65.0%
TCGGAAAACGCCGCCGGTGG+TGG + chr2.2:30028336-30028355 MS.gene83327:CDS 70.0%
! CTTTGGGGACGGCGGTGCCT+CGG - chr2.2:30028362-30028381 None:intergenic 70.0%
! GGCGGTGCCTCGGCCACCAC+CGG - chr2.2:30028352-30028371 None:intergenic 80.0%
! GGTGCCTCGGCCACCACCGG+CGG - chr2.2:30028349-30028368 None:intergenic 80.0%
!! AACGCCGCCGGTGGTGGCCG+AGG + chr2.2:30028342-30028361 MS.gene83327:CDS 80.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 30028324 30033962 30028324 ID=MS.gene83327
chr2.2 mRNA 30028324 30033962 30028324 ID=MS.gene83327.t1;Parent=MS.gene83327
chr2.2 exon 30028324 30028512 30028324 ID=MS.gene83327.t1.exon1;Parent=MS.gene83327.t1
chr2.2 CDS 30028324 30028512 30028324 ID=cds.MS.gene83327.t1;Parent=MS.gene83327.t1
chr2.2 exon 30028585 30028777 30028585 ID=MS.gene83327.t1.exon2;Parent=MS.gene83327.t1
chr2.2 CDS 30028585 30028777 30028585 ID=cds.MS.gene83327.t1;Parent=MS.gene83327.t1
chr2.2 exon 30029450 30029555 30029450 ID=MS.gene83327.t1.exon3;Parent=MS.gene83327.t1
chr2.2 CDS 30029450 30029555 30029450 ID=cds.MS.gene83327.t1;Parent=MS.gene83327.t1
chr2.2 exon 30030412 30030601 30030412 ID=MS.gene83327.t1.exon4;Parent=MS.gene83327.t1
chr2.2 CDS 30030412 30030601 30030412 ID=cds.MS.gene83327.t1;Parent=MS.gene83327.t1
chr2.2 exon 30033112 30033297 30033112 ID=MS.gene83327.t1.exon5;Parent=MS.gene83327.t1
chr2.2 CDS 30033112 30033297 30033112 ID=cds.MS.gene83327.t1;Parent=MS.gene83327.t1
chr2.2 exon 30033377 30033460 30033377 ID=MS.gene83327.t1.exon6;Parent=MS.gene83327.t1
chr2.2 CDS 30033377 30033460 30033377 ID=cds.MS.gene83327.t1;Parent=MS.gene83327.t1
chr2.2 exon 30033786 30033962 30033786 ID=MS.gene83327.t1.exon7;Parent=MS.gene83327.t1
chr2.2 CDS 30033786 30033962 30033786 ID=cds.MS.gene83327.t1;Parent=MS.gene83327.t1
Gene Sequence

>MS.gene83327

ATGGGCACTTCTTCGGAAAACGCCGCCGGTGGTGGCCGAGGCACCGCCGTCCCCAAAGAAGTCGACTACGCTAATTACTTTTGCACCTACTCCTTTCTCTATCACCAAAAAGAAATGCTCTCAGATCGTGTTCGTATGGATGCGTACTTCAACGCTGTTTTTGAAAACAAACACCACTTTAAAGACAAGGTTAGTATCCTTAACTGAACTGGGTTTGGGTGATGAAATTTGTGAAATAATAATGATAAGAAAATTGTTTAGGTTGTTTTGGATGTTGGTGCTGGAAGTGGGATTCTTGCTATATGGTCAGCTCAAGCAGGTGCAAAGAAGGTTTATGCTGTTGAAGCTACTAAGATGTCGGAACATGCTCGTGCGCTTGTGAAATCGAATAATCTTGAGCAGGTTGTTGAGGTTATTGAGGGTTCTGTTGAGGATGTTACATTGCCTGAGAAAGGTTTGTTTGTTTGTATGTGTATTATTAGTTCTAGCTTTAAGTTTGTAAGGTTTTGAATTAAATCGCGGTCATGATTGTGTTATGATATTTGATAATGCCATTTATTTCGTCAAATACCATGACTAGGACACTATCAACTAAGTCTTGAAAATTATGAATATTTCATAAAGGTCATTGATTTTGTCAAATTTTACTCATTTTAGTTTATCCGATAGTCTGTGAGGGACTAGATTGTTATTAAGTGGTTAATTATAGGGTCCAAATTGATAATTTGTGGTTAACATATAACAACTTAATTGATACTTCCTCCGGTCACTATTATAAGAAAATATTATTTTTTCGGGTTCATTGAATAACTTATGTATCTGGATTATAAACCAGATACATCAATTATTCAATGAATCTGAAAAAGGAATATTTGCTTATACTAGGGACCATCTTGACTATTTAATAGAGTCAGGGATATTTTGAGATATTCATAATCTGATTACCTATTTGAAAGTTTAGGGTTTAGGACTAGTTTGGTGATTTACGCAAAACCTTGATGTTGCGGCAACAATTGCAGTTGCATACTGTTCGTAAAAAACCTTATATGAATTGTTAAATGTTGGTTGATGTGCCTTTGTGTATTCTGTGATTGCCTTAAAGTGTTGGTGTTTGTATGACTTGCAGTTGATGTTATCATCTCTGAATGGATGGGTTATTTTCTTTTGCGAGAATCTATGTTTGATTCTGTCATATGTGCTCGTGACCGCTGGCTCAAACCAACAGGAGTGATGTAAGTATTGTTTTCTTCCCAGAAACGAAAGAGGTTTTTTTTTTTTTATTAATTAAAATGTATTGATGTTTTCTACTTCTTGATATGCACCTACTCCTCACTCATTTGAAAAACTAGATATGACTTGAATCTTTTCTTGAGATCGTATTTTCAGTCACTTGTCTAAATATTTGACTTTATTTTTATACTATATATGAAAAATGTGGCTAGTAGTTAGTTAAGAAAGTTTAACTTAGTTATAACTTGTTGTTTGTTTGTCTTTTAAACTAAAAGCTGCACATAAAGCAGATGATGATGTTCTTTAGTTTTCAACAGAATAGGGTTAATCAGTATTGTTAAGTGGTGGTTATAGCATTGACAAATCACTATTATTCTGCGTTACAATATTCATTGCAAAATATAGAGCCACTGTAACACTGTTGTATTACGGAATTTGAAAAAACCGCTTTTTTCTGCCATCCGTATTTCTGCAATTAACAACACGTGAATTAAAAAAATAAGCAGTCATTAGTTAATAGAATACAGTATTTCTGCTCTATTCACCTAATGTTAAAAAAATCCTTTCCTTCATAACACAAAACCTCTATTTTTACATGATAATCCTAACTACCCCAATTTGCACATTACCATGCTATTTTTACATTGACTTAACATGGCATGTTTTGCCTTACCATGCTATTTCCAGCACATTACCAACAGAGATACTGACATGTATCAATGATTTGGTAAACTATGAAGGTATCTGCTTCATGAAAATGAAATGGTTCTGATATAAAGATTCATTTTGTTAATGAACAAAACTTTGGTGGCTATCAGTGTTACATTTGCAATTGATTTAAAAATATTTATTTTGTAGGTATCCTAGTCATGCTCGCATGTGGATGGCACCCATTAGGACTGGGATAGTAGAACAAAAGTTGGGCGATTACCAGTCAGCTATGGGTGATTGGCACAACTTTGTCGATGAAACAAAAGCCTTCTATGGTGTTGATATGAGCACTTTGGCAAAGCCTTTTGCTGAGGAGCAGAGGAAATACTATCTACAGGCAAGTTATATACTTTGTACATCTTAAGTGTACTTTATAGTTTCAGTTACATAGAATTTTTGTTATGGTTGAGAGTATATCAGCCCTACATTATGTGCTGGCTTGTACAGACACAAAATTGACATGTTCTATGGAGTTGAACAATCCTAATCCCCACATGGAATTCATTTTGGTTTGATTGTCGTACGGTCCATGCTGTAGTGTATAAAAGTGTAATTGTGCATTCCCAAGAACAAGAACATCAACATGTGTTGGTGGGTCAGGCCACTTGCATGAAAAACCTAATTCAGAAGTACTTCATTCACCCACTCATAAACCAAGTTCAGAAACCGTCTTATAGCCTTTTCATTGTGCAAGAGTGAATCCCCTTGATCCAAAAGCCCTTGCTTCCATGCAATGATGAACTTTGCTGTGGCTATGCAATAATGCACCTGTGTAAGTGGCTTTGGAATTGTATCAAGAGCGCTGTCAAATTGAGGCGTTATAGCACTAATGCTTAAGGGATTTTGATGAATATGCAATGAAAACCTAATTTCTATCCTTGTTCCACTGTAAGGGACATAGCAGCCGCTATTGTATTTTTGGTCAGAGGATGTAGCAGAAATACCAGAAAATGGATAGTTTTAGGGTCTTCCTTTTTATTTAATGATAAAACTCAAGAGTTAGCTTGTATGCTGCACATGACTCCTTTTTTAGAATAGTAAAACTGAAGAGTTACACTTCTCTCTTCATGTGTAGTGAAACTGCAACCTTTCAATATGTAAGTGGATTTTTCTCTACCTCAGTTTTATTTCAACTAGTCCTCCTCCATCCCAACTCCCTTTCAACATGTCCTCCTCCATCTCCAGTGAGTCTCTGACATATCTCCTTTAGAAGAACACCGCGAAGATTAGAACAGCATGCGTAAGAACCAAAAATCTGAGCAACAGGGGCAGGGGATAACTGAACACCACAGCTCTTTCTTCTACTCAAAAGACTACCAAAAACCGAAAAAAAGCAGCTGAGAACATGTGGGAAATAAATAGAACAGAGTATGCGCCGAACAGAGAAATGGCTGTGCGCTAGCTCAGCTGGAAAATGCTGGGGTTTGCGGTGCAATGCAAACAAGCAGTAGGTGTAGGTGATTTTTCATAGAGCAGTTGGTTGCACGAGGAGAGCATTGAACAAGAATTCAAACACACCCTGACGAGAAAAAGTAAATTATAAAAATAACCTAAATTAATTGTTATTGGACAACTAAAAATGGGGGACTAAGGGATTTTACCTTCATTTAGTGTCAGTGGCGGAGCTAGGAATTTTAAGTTGTGGGGGCAATTTTCGACGAATATATAATATCAAAAATATTAACTTTTTCATAAGAGTATATATATACATCACAATATTCTCGACCACTTTTTAAATTATGAAAATATATGAATGTTTTTGAAAAAATGCAGAATAACAATCATTTCTTACGTTATCATGTTATATTGATTGTACTCTAAAAAATGTTAAATTGATTGTTGAAATAAAATAAAATCACAATTATAAAAATATTATGATCTAAAATATTCAATATTAAATTAAGAAAAATGTTAAACAGTGTCCTTAGGGCATTGGTAAAGAGAATTAAAATAGAAAAAATGTATTGGAAAATGGTAAAAAGTTGTGAATTCAACTTTTTAAAAGTCAAAAAATTGTTGATTTCATTGTCAACCTACTATTTTTTGTTTCCTTAACAAGTACTCTAAAAACACTTGTTACCACAATCCTTAAATTAATTATATGTCATGTCAAGTTATTGTGAGAGACAAGAATTAAAGAGTTGAGTTATATTTGTCATGAGCTGCACTACTACTAAACAAACCAACTAAAACATGAACCAACTATTCAAAATTACCACTTAGTAGTAGTATACATAAGTATAGTATTATATATTCCAAAAAAAATTATATATTCCAAAAAAATTGTGCAGGCAGGTGCCCTCACAGTGTTGTGAGTGGCTCCGCCACTGTTTAGTGTTGTATTTGTGAAAAATAGCGATCTGTTCAAACTTTGCCATGCTACAGTGGTATGGTTGCAACTCTGATGGACACATCACTTATTGAGGACATAGCACCTATATCAAATGTGCTATGCTATAGTGCTGCTATCTGACAACACTGTTTCCATATCAAGATAGAGGTTGCAATGGCCGTGAATTGCCTCTACTTTTGGTGACAAATGCAAAATGCAGTGAAGCTGTTTACATTGATGTGCTAGCTATGATGCAATTTATTGGTGACTATGATCTCACTTTAATGGTGTGATTTGTAGTTTTATGACTTTTATCTACAGGTCAACCTTCATTAATGATACTTCAATGGGTTTTTAGTTTACCCATGCCCAAATCTCATCAGAGGAGACTGTATTATCTTCCCTATGTCTACAATTAGATTTATCCAACTTTCTCTTGATGATTTCATTACTGATCATAATGAGTTTTCTGTTGCGCATATGTAACCAATTTATACATATTTTAATTTCTGTAGACATCGTTGTGGAGCAATCTTCATCCACATCAAGTCATAGGAACTGCTGGTCTAGTAAAGGAAATTGACTGTTTGACTGCCACAGTGGCAGACATTGAGGAAGTTAGATCAAACTTTTCTCTGTCAATAACCACGGAGAACACAAAACTGTGTGGATATGGAGGGTGGTTTGATGTACATTTCCGGGTAAGATGCTCTGACCTTGTATGGGCATTATAGCTATGGAATTTCTTCAATCTTATTGTTTCCTGTTTATGCTTACCAGGGACGAAGTGAGGATCCAGCTGAACATGAGATTGAGTTAACCACCGCTCCTAGTGTAGATTACTGTACACACTGGGGTCAGCAGGTTTGTACAGCATCAATTAGTTGACTTGTTTTATAATTATTTGTCAAATACAGTTTCTTTATTCTGTGAGCAATTTGAATATTAATGAAGGAGCTGATGGTGCCACTGCCTTCAATGAGTTCCATAAATTAGCTGTTCTATTCTATTATTAGAATATAACCTTGTACCTTTATAGATGAAAGACAGGGTTAATGACATTCATACTTTCTGTGATAATGTGGCCCTTTTTCAATTCTGACAATGTATCTGTTCAGTCACCTATAGCCTGTGACCTTCATTCTAGTTCAACTGTGTGATAATGTTAGTGTAATTAATCATTGGACAGGTTTTCCTCTTAAATCCTCCTACACATGTGAGTGATGGTGATGACCTAACTGTTAATTTTGTAATGAGTCGCTCGAAGGGAAACCATCGTTTAATGGAGGTTGAGCTTGGCTGTGAGATTCAAAAGCATTCGGGCAAGCTTGTTACACCTTTCAAAAATAAGTACTATATTGAATGA
Protein sequence

>MS.gene83327.t1

MGTSSENAAGGGRGTAVPKEVDYANYFCTYSFLYHQKEMLSDRVRMDAYFNAVFENKHHFKDKVVLDVGAGSGILAIWSAQAGAKKVYAVEATKMSEHARALVKSNNLEQVVEVIEGSVEDVTLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWMAPIRTGIVEQKLGDYQSAMGDWHNFVDETKAFYGVDMSTLAKPFAEEQRKYYLQTSLWSNLHPHQVIGTAGLVKEIDCLTATVADIEEVRSNFSLSITTENTKLCGYGGWFDVHFRGRSEDPAEHEIELTTAPSVDYCTHWGQQVFLLNPPTHVSDGDDLTVNFVMSRSKGNHRLMEVELGCEIQKHSGKLVTPFKNKYYIE