Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75062.t1 | XP_003620880.2 | 99.7 | 306 | 1 | 0 | 1 | 306 | 78 | 383 | 4.50E-173 | 617.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75062.t1 | Q9SU94 | 82.7 | 306 | 53 | 0 | 1 | 306 | 85 | 390 | 3.9e-149 | 528.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75062.t1 | G7KJ80 | 99.7 | 306 | 1 | 0 | 1 | 306 | 78 | 383 | 3.2e-173 | 617.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene75062 | 0.802321 | 5.93E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene75062 | 0.839344 | 1.68E-57 | -1.69E-46 |
| MS.gene050320 | MS.gene75062 | 0.81848 | 1.92E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene75062 | 0.81599 | 6.97E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene75062 | 0.831199 | 1.91E-55 | -1.69E-46 |
| MS.gene051748 | MS.gene75062 | 0.841914 | 3.56E-58 | -1.69E-46 |
| MS.gene051756 | MS.gene75062 | 0.803345 | 3.64E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene75062 | 0.82193 | 3.11E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene75062 | 0.847502 | 1.11E-59 | -1.69E-46 |
| MS.gene051975 | MS.gene75062 | 0.819024 | 1.44E-52 | -1.69E-46 |
| MS.gene052434 | MS.gene75062 | 0.811494 | 6.81E-51 | -1.69E-46 |
| MS.gene052818 | MS.gene75062 | -0.801907 | 7.21E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene75062 | 0.807076 | 6.03E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene75062 | 0.802441 | 5.60E-49 | -1.69E-46 |
| MS.gene053109 | MS.gene75062 | 0.824926 | 6.19E-54 | -1.69E-46 |
| MS.gene053340 | MS.gene75062 | 0.800628 | 1.32E-48 | -1.69E-46 |
| MS.gene053381 | MS.gene75062 | 0.804035 | 2.62E-49 | -1.69E-46 |
| MS.gene053952 | MS.gene75062 | 0.806546 | 7.81E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene75062 | 0.823062 | 1.70E-53 | -1.69E-46 |
| MS.gene055603 | MS.gene75062 | 0.848934 | 4.47E-60 | -1.69E-46 |
| MS.gene056091 | MS.gene75062 | 0.802005 | 6.89E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene75062 | 0.866968 | 1.93E-65 | -1.69E-46 |
| MS.gene056605 | MS.gene75062 | 0.867068 | 1.80E-65 | -1.69E-46 |
| MS.gene056631 | MS.gene75062 | 0.808515 | 2.98E-50 | -1.69E-46 |
| MS.gene056638 | MS.gene75062 | 0.806094 | 9.72E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene75062 | 0.837743 | 4.34E-57 | -1.69E-46 |
| MS.gene057094 | MS.gene75062 | 0.825213 | 5.30E-54 | -1.69E-46 |
| MS.gene05781 | MS.gene75062 | 0.813452 | 2.54E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene75062 | 0.820846 | 5.53E-53 | -1.69E-46 |
| MS.gene058238 | MS.gene75062 | 0.814468 | 1.52E-51 | -1.69E-46 |
| MS.gene058908 | MS.gene75062 | 0.818771 | 1.65E-52 | -1.69E-46 |
| MS.gene058911 | MS.gene75062 | 0.825341 | 4.94E-54 | -1.69E-46 |
| MS.gene059901 | MS.gene75062 | -0.820341 | 7.22E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene75062 | 0.830042 | 3.67E-55 | -1.69E-46 |
| MS.gene06011 | MS.gene75062 | 0.876909 | 9.59E-69 | -1.69E-46 |
| MS.gene060586 | MS.gene75062 | 0.80864 | 2.80E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene75062 | 0.839816 | 1.26E-57 | -1.69E-46 |
| MS.gene060830 | MS.gene75062 | 0.837148 | 6.16E-57 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75062.t1 | MTR_6g091770 | 99.673 | 306 | 1 | 0 | 1 | 306 | 78 | 383 | 0.0 | 639 |
| MS.gene75062.t1 | MTR_1g113940 | 35.048 | 311 | 181 | 6 | 1 | 293 | 25 | 332 | 4.05e-52 | 174 |
| MS.gene75062.t1 | MTR_3g013960 | 37.458 | 299 | 149 | 10 | 1 | 264 | 269 | 564 | 3.88e-51 | 178 |
| MS.gene75062.t1 | MTR_4g119900 | 36.299 | 281 | 166 | 7 | 1 | 270 | 155 | 433 | 2.12e-50 | 174 |
| MS.gene75062.t1 | MTR_4g119900 | 36.299 | 281 | 166 | 7 | 1 | 270 | 155 | 433 | 2.76e-50 | 174 |
| MS.gene75062.t1 | MTR_2g054880 | 32.836 | 335 | 192 | 10 | 1 | 303 | 39 | 372 | 2.98e-50 | 171 |
| MS.gene75062.t1 | MTR_2g436780 | 35.231 | 281 | 169 | 7 | 1 | 270 | 157 | 435 | 7.03e-48 | 168 |
| MS.gene75062.t1 | MTR_2g436780 | 35.231 | 281 | 169 | 7 | 1 | 270 | 157 | 435 | 9.05e-48 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75062.t1 | AT4G29510 | 82.680 | 306 | 53 | 0 | 1 | 306 | 85 | 390 | 0.0 | 550 |
| MS.gene75062.t1 | AT2G19670 | 79.085 | 306 | 64 | 0 | 1 | 306 | 61 | 366 | 0.0 | 528 |
| MS.gene75062.t1 | AT3G20020 | 39.157 | 332 | 162 | 4 | 1 | 293 | 96 | 426 | 1.47e-74 | 235 |
| MS.gene75062.t1 | AT3G20020 | 39.210 | 329 | 160 | 4 | 1 | 290 | 96 | 423 | 7.04e-74 | 234 |
| MS.gene75062.t1 | AT3G20020 | 36.446 | 332 | 149 | 4 | 1 | 293 | 96 | 404 | 1.36e-62 | 204 |
| MS.gene75062.t1 | AT3G12270 | 37.801 | 291 | 156 | 8 | 1 | 269 | 258 | 545 | 2.06e-54 | 187 |
| MS.gene75062.t1 | AT1G04870 | 33.019 | 318 | 177 | 8 | 1 | 286 | 48 | 361 | 1.83e-51 | 174 |
| MS.gene75062.t1 | AT5G49020 | 34.202 | 307 | 189 | 7 | 1 | 296 | 162 | 466 | 1.23e-49 | 172 |
| MS.gene75062.t1 | AT5G49020 | 34.202 | 307 | 189 | 7 | 1 | 296 | 164 | 468 | 1.38e-49 | 172 |
| MS.gene75062.t1 | AT3G06930 | 33.663 | 303 | 188 | 7 | 1 | 292 | 161 | 461 | 1.72e-49 | 172 |
| MS.gene75062.t1 | AT3G06930 | 33.663 | 303 | 188 | 7 | 1 | 292 | 161 | 461 | 1.73e-49 | 172 |
| MS.gene75062.t1 | AT1G04870 | 29.008 | 262 | 150 | 8 | 57 | 286 | 1 | 258 | 2.42e-29 | 113 |
Find 54 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAAGAAGCAAGCCTTGA+TGG | 0.279886 | 6.3:+83816872 | MS.gene75062:CDS |
| TCAGTTTGGAACAATGTATA+TGG | 0.294266 | 6.3:+83816834 | MS.gene75062:intron |
| CGAGCAGCAACAAGCTTAAA+AGG | 0.295407 | 6.3:-83817170 | None:intergenic |
| AGATAGAGTGATGCAATATC+TGG | 0.297140 | 6.3:-83816517 | None:intergenic |
| GGAAATGATTATATCAACTT+TGG | 0.337090 | 6.3:-83816263 | None:intergenic |
| GAAACAAACAGTCCTATATC+TGG | 0.356556 | 6.3:+83817773 | MS.gene75062:CDS |
| GAAATGATTATATCAACTTT+GGG | 0.370774 | 6.3:-83816262 | None:intergenic |
| TTTGTAATCTTTATCTTCAA+TGG | 0.372756 | 6.3:-83816545 | None:intergenic |
| GACATGTGCTGCCCCTGCTT+TGG | 0.382365 | 6.3:-83815912 | None:intergenic |
| CAATGTGTACTCCGCGATCT+TGG | 0.388811 | 6.3:-83817750 | None:intergenic |
| AGTTCGTTGCGATCTGATTC+TGG | 0.393515 | 6.3:-83816917 | None:intergenic |
| ATTATATCAACTTTGGGAAC+AGG | 0.394493 | 6.3:-83816256 | None:intergenic |
| CTTGATGTCGGTGCCGGGAC+TGG | 0.401470 | 6.3:+83815869 | MS.gene75062:CDS |
| AAATTGATGGGCTTCTCAAC+AGG | 0.411678 | 6.3:+83817251 | MS.gene75062:CDS |
| AAAACGTTATTTATCAGAAT+AGG | 0.416237 | 6.3:+83815822 | MS.gene75062:CDS |
| TCAAGACATCTTCCAGATAT+AGG | 0.420611 | 6.3:-83817785 | None:intergenic |
| TACAAAGTGTCATAAATTGA+TGG | 0.424292 | 6.3:+83817238 | MS.gene75062:CDS |
| CACATTGCAGGAAATGTTGA+AGG | 0.429613 | 6.3:+83815775 | None:intergenic |
| TGCTCTTTGCACGTGACAAA+TGG | 0.430259 | 6.3:+83816332 | MS.gene75062:CDS |
| TCACTATTCTGTGCCAAAGC+AGG | 0.443662 | 6.3:+83815899 | MS.gene75062:CDS |
| ACAAAGTGTCATAAATTGAT+GGG | 0.472701 | 6.3:+83817239 | MS.gene75062:CDS |
| TATAATCATTTCCGAATGGA+TGG | 0.481760 | 6.3:+83816273 | MS.gene75062:CDS |
| ATGCTCAAGTATTCATTGAA+TGG | 0.485369 | 6.3:+83817885 | MS.gene75062:CDS |
| GTAGTTCTTGATGTCGGTGC+CGG | 0.486285 | 6.3:+83815863 | MS.gene75062:CDS |
| AGTGCTCTCATATGGCTGAC+AGG | 0.490903 | 6.3:+83816037 | MS.gene75062:CDS |
| AAGGAAATAGTTGAAACTAA+TGG | 0.493872 | 6.3:+83816063 | MS.gene75062:CDS |
| GAAACTAATGGTTATTCTGA+AGG | 0.507346 | 6.3:+83816075 | MS.gene75062:CDS |
| GCAGGTAGAGTGCTCTCATA+TGG | 0.508951 | 6.3:+83816029 | MS.gene75062:intron |
| CACTATTCTGTGCCAAAGCA+GGG | 0.510201 | 6.3:+83815900 | MS.gene75062:CDS |
| CAAGAAATATCCCATCCATT+CGG | 0.524018 | 6.3:-83816284 | None:intergenic |
| TAGTTCTTGATGTCGGTGCC+GGG | 0.525835 | 6.3:+83815864 | MS.gene75062:CDS |
| TCAAGTATTCATTGAATGGC+AGG | 0.530106 | 6.3:+83817889 | MS.gene75062:CDS |
| CAGGCGATGCAATGCTTCGA+GGG | 0.549835 | 6.3:+83817908 | MS.gene75062:CDS |
| TAGTGATAAAATTCCAGTCC+CGG | 0.559941 | 6.3:-83815882 | None:intergenic |
| GCAGGCGATGCAATGCTTCG+AGG | 0.569433 | 6.3:+83817907 | MS.gene75062:CDS |
| GATAGAGTGATGCAATATCT+GGG | 0.576462 | 6.3:-83816516 | None:intergenic |
| TCATATGGCTGACAGGGCAA+AGG | 0.579225 | 6.3:+83816044 | MS.gene75062:CDS |
| GTGCTCTCATATGGCTGACA+GGG | 0.582889 | 6.3:+83816038 | MS.gene75062:CDS |
| TTGATATAATCATTTCCGAA+TGG | 0.588889 | 6.3:+83816269 | MS.gene75062:CDS |
| AATAAAGTAGTTCTTGATGT+CGG | 0.594677 | 6.3:+83815857 | MS.gene75062:CDS |
| GATGTCTTGACCATTTGTGA+GGG | 0.596606 | 6.3:+83817798 | MS.gene75062:CDS |
| TGGTCAACTGTGTCAACAAG+AGG | 0.597351 | 6.3:-83816897 | None:intergenic |
| GTCAACAAGAGGCTCCATCA+AGG | 0.601626 | 6.3:-83816886 | None:intergenic |
| ATAATCATTTCCGAATGGAT+GGG | 0.608420 | 6.3:+83816274 | MS.gene75062:CDS |
| AACGAACTGTCAGCTACTCA+AGG | 0.616591 | 6.3:+83816932 | MS.gene75062:CDS |
| GTAATCTTTATCTTCAATGG+CGG | 0.617207 | 6.3:-83816542 | None:intergenic |
| TGTCTTGACCATTTGTGAGG+GGG | 0.625821 | 6.3:+83817800 | MS.gene75062:CDS |
| CAAGATCGCGGAGTACACAT+TGG | 0.628631 | 6.3:+83817751 | MS.gene75062:CDS |
| TATTTGCAGGGCCAAGATCG+CGG | 0.646643 | 6.3:+83817739 | MS.gene75062:intron |
| ATGTCTTGACCATTTGTGAG+GGG | 0.652961 | 6.3:+83817799 | MS.gene75062:CDS |
| AGATGTCTTGACCATTTGTG+AGG | 0.654125 | 6.3:+83817797 | MS.gene75062:CDS |
| AGCATTATATCAACATCCCG+AGG | 0.654468 | 6.3:-83817867 | None:intergenic |
| ACTATTCTGTGCCAAAGCAG+GGG | 0.658809 | 6.3:+83815901 | MS.gene75062:CDS |
| AATTGTAGGGAGCATGACTG+TGG | 0.688544 | 6.3:+83817827 | MS.gene75062:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTTAAAAAAAGAAAATT+GGG | + | chr6.3:83817385-83817404 | MS.gene75062:intron | 10.0% |
| !! | TATTCTTAAAAAAAGAAAAT+TGG | + | chr6.3:83817384-83817403 | MS.gene75062:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGTGT+AGG | + | chr6.3:83816474-83816493 | MS.gene75062:intron | 10.0% |
| !! | AAATGATATTATAACAAAGA+CGG | - | chr6.3:83817651-83817670 | None:intergenic | 15.0% |
| !! | TTCTTAAAAAAAGAAAATTG+GGG | + | chr6.3:83817386-83817405 | MS.gene75062:intron | 15.0% |
| !!! | ATTCATTTTTATCATTTTAG+TGG | + | chr6.3:83817686-83817705 | MS.gene75062:intron | 15.0% |
| !!! | TTGTTATAATATCATTTTAG+TGG | + | chr6.3:83817654-83817673 | MS.gene75062:intron | 15.0% |
| !! | AAAACGTTATTTATCAGAAT+AGG | + | chr6.3:83815822-83815841 | MS.gene75062:CDS | 20.0% |
| !! | AACATTATGGTAATTATAGT+TGG | - | chr6.3:83816184-83816203 | None:intergenic | 20.0% |
| !! | ATTTGTGTTTAAACAAAACT+AGG | - | chr6.3:83816755-83816774 | None:intergenic | 20.0% |
| !! | GAAATGATTATATCAACTTT+GGG | - | chr6.3:83816265-83816284 | None:intergenic | 20.0% |
| !! | TTTGTAATCTTTATCTTCAA+TGG | - | chr6.3:83816548-83816567 | None:intergenic | 20.0% |
| !!! | AATTTTAAAACTGTTCCAAA+TGG | + | chr6.3:83817446-83817465 | MS.gene75062:intron | 20.0% |
| !!! | ATTTTAAAACTGTTCCAAAT+GGG | + | chr6.3:83817447-83817466 | MS.gene75062:intron | 20.0% |
| !!! | ATTTTCAGTATATTACCTTT+TGG | + | chr6.3:83816134-83816153 | MS.gene75062:intron | 20.0% |
| !!! | CATGTATTTTTTCTGAAAAT+CGG | + | chr6.3:83817572-83817591 | MS.gene75062:intron | 20.0% |
| !!! | GATGAAATTTTCTTTTCATT+TGG | + | chr6.3:83817035-83817054 | MS.gene75062:intron | 20.0% |
| !!! | TTTTTTTTTTTTTGTGTAGG+TGG | + | chr6.3:83816477-83816496 | MS.gene75062:intron | 20.0% |
| ! | AAACAAAACTAGGAATTTCA+AGG | - | chr6.3:83816745-83816764 | None:intergenic | 25.0% |
| ! | AACTGTAGAAAACAACATTA+TGG | - | chr6.3:83816197-83816216 | None:intergenic | 25.0% |
| ! | AAGGAAATAGTTGAAACTAA+TGG | + | chr6.3:83816063-83816082 | MS.gene75062:CDS | 25.0% |
| ! | AATAAAGTAGTTCTTGATGT+CGG | + | chr6.3:83815857-83815876 | MS.gene75062:CDS | 25.0% |
| ! | GGAAATGATTATATCAACTT+TGG | - | chr6.3:83816266-83816285 | None:intergenic | 25.0% |
| ! | TAAAAAAAGAAAATTGGGGA+GGG | + | chr6.3:83817390-83817409 | MS.gene75062:intron | 25.0% |
| ! | TGTGTACATATATATTTGCA+GGG | + | chr6.3:83817727-83817746 | MS.gene75062:intron | 25.0% |
| ! | TTAAAAAAAGAAAATTGGGG+AGG | + | chr6.3:83817389-83817408 | MS.gene75062:intron | 25.0% |
| ! | TTCCAAACTGATATAGAAAA+TGG | - | chr6.3:83816825-83816844 | None:intergenic | 25.0% |
| ! | TTGATATAATCATTTCCGAA+TGG | + | chr6.3:83816269-83816288 | MS.gene75062:CDS | 25.0% |
| ! | TTGTGTACATATATATTTGC+AGG | + | chr6.3:83817726-83817745 | MS.gene75062:intron | 25.0% |
| !! | ACAAAGTGTCATAAATTGAT+GGG | + | chr6.3:83817239-83817258 | MS.gene75062:CDS | 25.0% |
| !! | TACAAAGTGTCATAAATTGA+TGG | + | chr6.3:83817238-83817257 | MS.gene75062:CDS | 25.0% |
| !! | TTCCATTTTCTATATCAGTT+TGG | + | chr6.3:83816820-83816839 | MS.gene75062:intron | 25.0% |
| !!! | AATAACGTTTTGATATGTCT+TGG | - | chr6.3:83815813-83815832 | None:intergenic | 25.0% |
| !!! | ACAGTTATAACAGTTTTGAA+AGG | + | chr6.3:83816211-83816230 | MS.gene75062:intron | 25.0% |
| !!! | CAGTTATAACAGTTTTGAAA+GGG | + | chr6.3:83816212-83816231 | MS.gene75062:intron | 25.0% |
| AAAAAAAGAAAATTGGGGAG+GGG | + | chr6.3:83817391-83817410 | MS.gene75062:intron | 30.0% | |
| ACTCAATCATATTTAGCAAG+AGG | - | chr6.3:83816599-83816618 | None:intergenic | 30.0% | |
| ATAATCATTTCCGAATGGAT+GGG | + | chr6.3:83816274-83816293 | MS.gene75062:CDS | 30.0% | |
| ATCATGTGCAAATAAAGAAC+TGG | + | chr6.3:83817526-83817545 | MS.gene75062:intron | 30.0% | |
| ATGCTCAAGTATTCATTGAA+TGG | + | chr6.3:83817885-83817904 | MS.gene75062:CDS | 30.0% | |
| CAAATGATATTTGTGTCATC+AGG | + | chr6.3:83816770-83816789 | MS.gene75062:intron | 30.0% | |
| CAATTTCTCAATTCCGTATT+CGG | - | chr6.3:83816699-83816718 | None:intergenic | 30.0% | |
| CCACAAAAACTAAAGTAGAA+AGG | - | chr6.3:83817283-83817302 | None:intergenic | 30.0% | |
| CTTGTATTTCATTCCGAATA+CGG | + | chr6.3:83816683-83816702 | MS.gene75062:intron | 30.0% | |
| GAAACTAATGGTTATTCTGA+AGG | + | chr6.3:83816075-83816094 | MS.gene75062:CDS | 30.0% | |
| GACATAATTCAAAACCCATT+TGG | - | chr6.3:83817464-83817483 | None:intergenic | 30.0% | |
| GGGATTATTATCAATTAGTG+TGG | + | chr6.3:83817413-83817432 | MS.gene75062:intron | 30.0% | |
| GTAATCTTTATCTTCAATGG+CGG | - | chr6.3:83816545-83816564 | None:intergenic | 30.0% | |
| TATAATCATTTCCGAATGGA+TGG | + | chr6.3:83816273-83816292 | MS.gene75062:CDS | 30.0% | |
| TGCGTGTGCAAAATTTAAAA+TGG | - | chr6.3:83816012-83816031 | None:intergenic | 30.0% | |
| TTTCAGAGGCAAATAAGTAT+TGG | - | chr6.3:83816648-83816667 | None:intergenic | 30.0% | |
| ! | ATTATATCAACTTTGGGAAC+AGG | - | chr6.3:83816259-83816278 | None:intergenic | 30.0% |
| ! | ATTTTAAATTTTGCACACGC+AGG | + | chr6.3:83816011-83816030 | MS.gene75062:intron | 30.0% |
| ! | TCAGTTTGGAACAATGTATA+TGG | + | chr6.3:83816834-83816853 | MS.gene75062:intron | 30.0% |
| ! | TTCAGTATATTACCTTTTGG+CGG | + | chr6.3:83816137-83816156 | MS.gene75062:intron | 30.0% |
| !! | GTTTTGAATTATGTCACTTG+AGG | + | chr6.3:83817469-83817488 | MS.gene75062:intron | 30.0% |
| !!! | CCTTTCTACTTTAGTTTTTG+TGG | + | chr6.3:83817280-83817299 | MS.gene75062:intron | 30.0% |
| AAAAAAGAAAATTGGGGAGG+GGG | + | chr6.3:83817392-83817411 | MS.gene75062:intron | 35.0% | |
| AATTTGCATGTCAGTTTCAG+AGG | - | chr6.3:83816662-83816681 | None:intergenic | 35.0% | |
| AGATAGAGTGATGCAATATC+TGG | - | chr6.3:83816520-83816539 | None:intergenic | 35.0% | |
| ATATTGCATGTACCAGAATC+TGG | + | chr6.3:83816402-83816421 | MS.gene75062:intron | 35.0% | |
| CAAGAAATATCCCATCCATT+CGG | - | chr6.3:83816287-83816306 | None:intergenic | 35.0% | |
| CCCAAATAAAAAGAATCCTC+GGG | + | chr6.3:83817851-83817870 | MS.gene75062:CDS | 35.0% | |
| CCCCAAATAAAAAGAATCCT+CGG | + | chr6.3:83817850-83817869 | MS.gene75062:CDS | 35.0% | |
| GAAACAAACAGTCCTATATC+TGG | + | chr6.3:83817773-83817792 | MS.gene75062:CDS | 35.0% | |
| GACATCTCAAAAATGTCTTC+AGG | + | chr6.3:83817128-83817147 | MS.gene75062:CDS | 35.0% | |
| GATAGAGTGATGCAATATCT+GGG | - | chr6.3:83816519-83816538 | None:intergenic | 35.0% | |
| TAGTGATAAAATTCCAGTCC+CGG | - | chr6.3:83815885-83815904 | None:intergenic | 35.0% | |
| TCAAGACATCTTCCAGATAT+AGG | - | chr6.3:83817788-83817807 | None:intergenic | 35.0% | |
| TCAAGTATTCATTGAATGGC+AGG | + | chr6.3:83817889-83817908 | MS.gene75062:CDS | 35.0% | |
| ! | TCCCGAGGATTCTTTTTATT+TGG | - | chr6.3:83817855-83817874 | None:intergenic | 35.0% |
| !! | CATAAAAGCATCATCAGAAC+TGG | - | chr6.3:83816968-83816987 | None:intergenic | 35.0% |
| !! | CCCGAGGATTCTTTTTATTT+GGG | - | chr6.3:83817854-83817873 | None:intergenic | 35.0% |
| !! | CCGAGGATTCTTTTTATTTG+GGG | - | chr6.3:83817853-83817872 | None:intergenic | 35.0% |
| !! | GAGGCAAATAAGTATTGGTT+TGG | - | chr6.3:83816643-83816662 | None:intergenic | 35.0% |
| !!! | AGACATTTTTGAGATGTCCA+TGG | - | chr6.3:83817126-83817145 | None:intergenic | 35.0% |
| !!! | TTTTTTGTGTAGGTGGATGA+TGG | + | chr6.3:83816484-83816503 | MS.gene75062:intron | 35.0% |
| AAAAAGAAAATTGGGGAGGG+GGG | + | chr6.3:83817393-83817412 | MS.gene75062:intron | 40.0% | |
| AACAAAGACGGAACCACAAA+TGG | - | chr6.3:83817639-83817658 | None:intergenic | 40.0% | |
| AAGTAATGACCACCAGATTC+TGG | - | chr6.3:83816417-83816436 | None:intergenic | 40.0% | |
| ACAAAGACGGAACCACAAAT+GGG | - | chr6.3:83817638-83817657 | None:intergenic | 40.0% | |
| ACTACTTATCAACACGAGCA+AGG | - | chr6.3:83816375-83816394 | None:intergenic | 40.0% | |
| AGATGTCTTGACCATTTGTG+AGG | + | chr6.3:83817797-83817816 | MS.gene75062:CDS | 40.0% | |
| AGCATTATATCAACATCCCG+AGG | - | chr6.3:83817870-83817889 | None:intergenic | 40.0% | |
| ATGTCTTGACCATTTGTGAG+GGG | + | chr6.3:83817799-83817818 | MS.gene75062:CDS | 40.0% | |
| GATGTCTTGACCATTTGTGA+GGG | + | chr6.3:83817798-83817817 | MS.gene75062:CDS | 40.0% | |
| GGTCTGCTTTGTCAATAGTA+AGG | + | chr6.3:83817301-83817320 | MS.gene75062:intron | 40.0% | |
| GTTCATCTTTGTTCAGTCCA+TGG | + | chr6.3:83817106-83817125 | MS.gene75062:intron | 40.0% | |
| TTCAACAGTCTTCCCATTTG+TGG | + | chr6.3:83817623-83817642 | MS.gene75062:intron | 40.0% | |
| ! | AGTATATTACCTTTTGGCGG+AGG | + | chr6.3:83816140-83816159 | MS.gene75062:intron | 40.0% |
| ! | GTATATTACCTTTTGGCGGA+GGG | + | chr6.3:83816141-83816160 | MS.gene75062:intron | 40.0% |
| !! | AAATTGATGGGCTTCTCAAC+AGG | + | chr6.3:83817251-83817270 | MS.gene75062:CDS | 40.0% |
| !! | TATCATTTTAGTGGCGAGTG+TGG | + | chr6.3:83817663-83817682 | MS.gene75062:intron | 40.0% |
| AACGAACTGTCAGCTACTCA+AGG | + | chr6.3:83816932-83816951 | MS.gene75062:CDS | 45.0% | |
| AACTGTCAGCTACTCAAGGT+CGG | + | chr6.3:83816936-83816955 | MS.gene75062:intron | 45.0% | |
| AATTGTCTCCCCCTCACAAA+TGG | - | chr6.3:83817811-83817830 | None:intergenic | 45.0% | |
| ACTATTCTGTGCCAAAGCAG+GGG | + | chr6.3:83815901-83815920 | MS.gene75062:CDS | 45.0% | |
| AGTTCGTTGCGATCTGATTC+TGG | - | chr6.3:83816920-83816939 | None:intergenic | 45.0% | |
| CACATGATGTGTCAGCTCAA+TGG | - | chr6.3:83817514-83817533 | None:intergenic | 45.0% | |
| CACTATTCTGTGCCAAAGCA+GGG | + | chr6.3:83815900-83815919 | MS.gene75062:CDS | 45.0% | |
| CATCAAGAAGCAAGCCTTGA+TGG | + | chr6.3:83816872-83816891 | MS.gene75062:CDS | 45.0% | |
| CGAGCAGCAACAAGCTTAAA+AGG | - | chr6.3:83817173-83817192 | None:intergenic | 45.0% | |
| TCACTATTCTGTGCCAAAGC+AGG | + | chr6.3:83815899-83815918 | MS.gene75062:CDS | 45.0% | |
| TGCTCTTTGCACGTGACAAA+TGG | + | chr6.3:83816332-83816351 | MS.gene75062:CDS | 45.0% | |
| TGGTCAACTGTGTCAACAAG+AGG | - | chr6.3:83816900-83816919 | None:intergenic | 45.0% | |
| TGTCTTGACCATTTGTGAGG+GGG | + | chr6.3:83817800-83817819 | MS.gene75062:CDS | 45.0% | |
| TTGCATGTACCAGAATCTGG+TGG | + | chr6.3:83816405-83816424 | MS.gene75062:intron | 45.0% | |
| ! | AATTGTAGGGAGCATGACTG+TGG | + | chr6.3:83817827-83817846 | MS.gene75062:CDS | 45.0% |
| AGTGCTCTCATATGGCTGAC+AGG | + | chr6.3:83816037-83816056 | MS.gene75062:CDS | 50.0% | |
| CAAGATCGCGGAGTACACAT+TGG | + | chr6.3:83817751-83817770 | MS.gene75062:CDS | 50.0% | |
| CAATGTGTACTCCGCGATCT+TGG | - | chr6.3:83817753-83817772 | None:intergenic | 50.0% | |
| GTAGTTCTTGATGTCGGTGC+CGG | + | chr6.3:83815863-83815882 | MS.gene75062:CDS | 50.0% | |
| GTCAACAAGAGGCTCCATCA+AGG | - | chr6.3:83816889-83816908 | None:intergenic | 50.0% | |
| GTGAGGGGGAGACAATTGTA+GGG | + | chr6.3:83817814-83817833 | MS.gene75062:CDS | 50.0% | |
| GTGCTCTCATATGGCTGACA+GGG | + | chr6.3:83816038-83816057 | MS.gene75062:CDS | 50.0% | |
| TATTTGCAGGGCCAAGATCG+CGG | + | chr6.3:83817739-83817758 | MS.gene75062:intron | 50.0% | |
| TCATATGGCTGACAGGGCAA+AGG | + | chr6.3:83816044-83816063 | MS.gene75062:CDS | 50.0% | |
| TGTGAGGGGGAGACAATTGT+AGG | + | chr6.3:83817813-83817832 | MS.gene75062:CDS | 50.0% | |
| ! | GCAGGTAGAGTGCTCTCATA+TGG | + | chr6.3:83816029-83816048 | MS.gene75062:intron | 50.0% |
| ! | TAGTTCTTGATGTCGGTGCC+GGG | + | chr6.3:83815864-83815883 | MS.gene75062:CDS | 50.0% |
| CAGGCGATGCAATGCTTCGA+GGG | + | chr6.3:83817908-83817927 | MS.gene75062:CDS | 55.0% | |
| CGATCAATCCCTCCGCCAAA+AGG | - | chr6.3:83816152-83816171 | None:intergenic | 55.0% | |
| GCGGAGGGATTGATCGTGAA+AGG | + | chr6.3:83816156-83816175 | MS.gene75062:intron | 55.0% | |
| GACATGTGCTGCCCCTGCTT+TGG | - | chr6.3:83815915-83815934 | None:intergenic | 60.0% | |
| GCAGGCGATGCAATGCTTCG+AGG | + | chr6.3:83817907-83817926 | MS.gene75062:CDS | 60.0% | |
| !! | CTTGATGTCGGTGCCGGGAC+TGG | + | chr6.3:83815869-83815888 | MS.gene75062:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 83815788 | 83817953 | 83815788 | ID=MS.gene75062 |
| chr6.3 | mRNA | 83815788 | 83817953 | 83815788 | ID=MS.gene75062.t1;Parent=MS.gene75062 |
| chr6.3 | exon | 83815788 | 83815940 | 83815788 | ID=MS.gene75062.t1.exon1;Parent=MS.gene75062.t1 |
| chr6.3 | CDS | 83815788 | 83815940 | 83815788 | ID=cds.MS.gene75062.t1;Parent=MS.gene75062.t1 |
| chr6.3 | exon | 83816033 | 83816096 | 83816033 | ID=MS.gene75062.t1.exon2;Parent=MS.gene75062.t1 |
| chr6.3 | CDS | 83816033 | 83816096 | 83816033 | ID=cds.MS.gene75062.t1;Parent=MS.gene75062.t1 |
| chr6.3 | exon | 83816215 | 83816357 | 83816215 | ID=MS.gene75062.t1.exon3;Parent=MS.gene75062.t1 |
| chr6.3 | CDS | 83816215 | 83816357 | 83816215 | ID=cds.MS.gene75062.t1;Parent=MS.gene75062.t1 |
| chr6.3 | exon | 83816496 | 83816583 | 83816496 | ID=MS.gene75062.t1.exon4;Parent=MS.gene75062.t1 |
| chr6.3 | CDS | 83816496 | 83816583 | 83816496 | ID=cds.MS.gene75062.t1;Parent=MS.gene75062.t1 |
| chr6.3 | exon | 83816838 | 83816953 | 83816838 | ID=MS.gene75062.t1.exon5;Parent=MS.gene75062.t1 |
| chr6.3 | CDS | 83816838 | 83816953 | 83816838 | ID=cds.MS.gene75062.t1;Parent=MS.gene75062.t1 |
| chr6.3 | exon | 83817122 | 83817272 | 83817122 | ID=MS.gene75062.t1.exon6;Parent=MS.gene75062.t1 |
| chr6.3 | CDS | 83817122 | 83817272 | 83817122 | ID=cds.MS.gene75062.t1;Parent=MS.gene75062.t1 |
| chr6.3 | exon | 83817748 | 83817953 | 83817748 | ID=MS.gene75062.t1.exon7;Parent=MS.gene75062.t1 |
| chr6.3 | CDS | 83817748 | 83817953 | 83817748 | ID=cds.MS.gene75062.t1;Parent=MS.gene75062.t1 |
| Gene Sequence |
| Protein sequence |
