Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66341.t1 | XP_003620880.2 | 100 | 336 | 0 | 0 | 1 | 336 | 48 | 383 | 5.60E-193 | 683.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66341.t1 | A2Z0C0 | 83.4 | 326 | 54 | 0 | 11 | 336 | 62 | 387 | 4.4e-162 | 572.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66341.t1 | G7KJ80 | 100.0 | 336 | 0 | 0 | 1 | 336 | 48 | 383 | 4.0e-193 | 683.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050069 | MS.gene66341 | 0.807537 | 4.81E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene66341 | 0.80602 | 1.01E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene66341 | 0.822017 | 2.97E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene66341 | 0.819955 | 8.85E-53 | -1.69E-46 |
| MS.gene052818 | MS.gene66341 | -0.817823 | 2.70E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene66341 | 0.80609 | 9.74E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene66341 | 0.811553 | 6.61E-51 | -1.69E-46 |
| MS.gene053963 | MS.gene66341 | 0.819878 | 9.21E-53 | -1.69E-46 |
| MS.gene054222 | MS.gene66341 | 0.801248 | 9.85E-49 | -1.69E-46 |
| MS.gene05469 | MS.gene66341 | 0.808956 | 2.40E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene66341 | 0.813342 | 2.69E-51 | -1.69E-46 |
| MS.gene055603 | MS.gene66341 | 0.835083 | 2.06E-56 | -1.69E-46 |
| MS.gene056091 | MS.gene66341 | 0.8376 | 4.72E-57 | -1.69E-46 |
| MS.gene056403 | MS.gene66341 | 0.865433 | 5.93E-65 | -1.69E-46 |
| MS.gene056605 | MS.gene66341 | 0.875514 | 2.90E-68 | -1.69E-46 |
| MS.gene05689 | MS.gene66341 | 0.866911 | 2.02E-65 | -1.69E-46 |
| MS.gene056986 | MS.gene66341 | 0.842473 | 2.53E-58 | -1.69E-46 |
| MS.gene057094 | MS.gene66341 | 0.807093 | 5.98E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene66341 | 0.81179 | 5.87E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene66341 | 0.805638 | 1.21E-49 | -1.69E-46 |
| MS.gene059227 | MS.gene66341 | 0.802716 | 4.92E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene66341 | 0.807476 | 4.96E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene66341 | 0.810105 | 1.36E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene66341 | 0.867381 | 1.43E-65 | -1.69E-46 |
| MS.gene060763 | MS.gene66341 | 0.830914 | 2.25E-55 | -1.69E-46 |
| MS.gene060830 | MS.gene66341 | 0.852218 | 5.33E-61 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66341.t1 | MTR_6g091770 | 100.000 | 336 | 0 | 0 | 1 | 336 | 48 | 383 | 0.0 | 705 |
| MS.gene66341.t1 | MTR_3g013960 | 38.462 | 312 | 154 | 9 | 18 | 294 | 256 | 564 | 7.27e-59 | 200 |
| MS.gene66341.t1 | MTR_1g113940 | 35.276 | 326 | 190 | 6 | 16 | 323 | 10 | 332 | 1.91e-55 | 184 |
| MS.gene66341.t1 | MTR_4g119900 | 35.294 | 306 | 185 | 7 | 6 | 300 | 130 | 433 | 7.12e-54 | 185 |
| MS.gene66341.t1 | MTR_4g119900 | 35.294 | 306 | 185 | 7 | 6 | 300 | 130 | 433 | 8.17e-54 | 185 |
| MS.gene66341.t1 | MTR_2g054880 | 33.046 | 348 | 200 | 10 | 18 | 333 | 26 | 372 | 1.28e-52 | 177 |
| MS.gene66341.t1 | MTR_2g436780 | 34.314 | 306 | 188 | 7 | 6 | 300 | 132 | 435 | 2.23e-51 | 178 |
| MS.gene66341.t1 | MTR_2g436780 | 34.314 | 306 | 188 | 7 | 6 | 300 | 132 | 435 | 2.31e-51 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66341.t1 | AT4G29510 | 82.927 | 328 | 56 | 0 | 9 | 336 | 63 | 390 | 0.0 | 590 |
| MS.gene66341.t1 | AT2G19670 | 80.247 | 324 | 64 | 0 | 13 | 336 | 43 | 366 | 0.0 | 565 |
| MS.gene66341.t1 | AT3G20020 | 40.580 | 345 | 165 | 4 | 18 | 323 | 83 | 426 | 5.85e-83 | 258 |
| MS.gene66341.t1 | AT3G20020 | 40.643 | 342 | 163 | 4 | 18 | 320 | 83 | 423 | 3.60e-82 | 256 |
| MS.gene66341.t1 | AT3G20020 | 37.971 | 345 | 152 | 4 | 18 | 323 | 83 | 404 | 3.32e-71 | 227 |
| MS.gene66341.t1 | AT3G12270 | 38.750 | 320 | 169 | 9 | 4 | 299 | 229 | 545 | 8.65e-63 | 210 |
| MS.gene66341.t1 | AT1G04870 | 32.931 | 331 | 186 | 8 | 18 | 316 | 35 | 361 | 2.69e-53 | 180 |
| MS.gene66341.t1 | AT5G49020 | 33.434 | 332 | 208 | 7 | 6 | 326 | 139 | 468 | 7.70e-53 | 182 |
| MS.gene66341.t1 | AT5G49020 | 33.434 | 332 | 208 | 7 | 6 | 326 | 137 | 466 | 9.15e-53 | 182 |
| MS.gene66341.t1 | AT3G06930 | 32.927 | 328 | 207 | 7 | 6 | 322 | 136 | 461 | 1.83e-52 | 181 |
| MS.gene66341.t1 | AT3G06930 | 32.927 | 328 | 207 | 7 | 6 | 322 | 136 | 461 | 1.97e-52 | 181 |
| MS.gene66341.t1 | AT1G04870 | 29.008 | 262 | 150 | 8 | 87 | 316 | 1 | 258 | 3.75e-29 | 113 |
Find 57 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAAGAAGCAAGCCTTGA+TGG | 0.279886 | 6.4:+63158679 | MS.gene66341:CDS |
| GAAATGATTATATCAACTTT+AGG | 0.289343 | 6.4:-63158099 | None:intergenic |
| TCAGTTTGGAACAATGTATA+TGG | 0.294266 | 6.4:+63158641 | MS.gene66341:intron |
| AGATAGAGTGATGCAATATC+TGG | 0.297140 | 6.4:-63158326 | None:intergenic |
| CGAGCAGCAACAAGCTTAAA+AGG | 0.335924 | 6.4:-63158976 | None:intergenic |
| GAAACAAACAGTCCTATATC+TGG | 0.356556 | 6.4:+63159615 | MS.gene66341:CDS |
| TTTGTAATCTTTATCTTCAA+TGG | 0.372756 | 6.4:-63158354 | None:intergenic |
| GACATGTGCTGCCCCTGCTT+TGG | 0.382365 | 6.4:-63157745 | None:intergenic |
| CAATGTGTACTCCGCGATCT+TGG | 0.388811 | 6.4:-63159592 | None:intergenic |
| AGTTCGTTGCGATCTGATTC+TGG | 0.393515 | 6.4:-63158724 | None:intergenic |
| ATTATATCAACTTTAGGAAC+AGG | 0.395657 | 6.4:-63158093 | None:intergenic |
| CTTGATGTCGGTGCCGGGAC+TGG | 0.401470 | 6.4:+63157702 | MS.gene66341:CDS |
| GAAACTAATGGTTATTCTAA+AGG | 0.402861 | 6.4:+63157912 | MS.gene66341:CDS |
| AAATTGATGGGCTTCTCAAC+AGG | 0.411678 | 6.4:+63159057 | MS.gene66341:CDS |
| AAAACGTTATTTATCAGAAT+AGG | 0.416237 | 6.4:+63157655 | MS.gene66341:CDS |
| TCAAGACATCTTCCAGATAT+AGG | 0.420611 | 6.4:-63159627 | None:intergenic |
| TACAAAGTGTCATAAATTGA+TGG | 0.424292 | 6.4:+63159044 | MS.gene66341:CDS |
| CACATTGCAGGAAATGTTGA+AGG | 0.429613 | 6.4:+63157608 | MS.gene66341:intron |
| TGCTCTTTGCACGTGACAAA+TGG | 0.430259 | 6.4:+63158169 | MS.gene66341:CDS |
| TCACTATTCTGTGCCAAAGC+AGG | 0.443662 | 6.4:+63157732 | MS.gene66341:CDS |
| TTTGATTCTTACTCTCACTT+TGG | 0.465232 | 6.4:+63155908 | MS.gene66341:CDS |
| GCAAGCCTTGATGGAGCCTC+TGG | 0.466123 | 6.4:+63158688 | MS.gene66341:CDS |
| ACAAAGTGTCATAAATTGAT+GGG | 0.472701 | 6.4:+63159045 | MS.gene66341:CDS |
| GCAGGTCGAGTGCTCTCATA+TGG | 0.479543 | 6.4:+63157866 | MS.gene66341:intron |
| TATAATCATTTCCGAATGGA+TGG | 0.481760 | 6.4:+63158110 | MS.gene66341:CDS |
| ATGCTCAAGTATTCATTGAA+TGG | 0.485369 | 6.4:+63159727 | MS.gene66341:CDS |
| GTAGTTCTTGATGTCGGTGC+CGG | 0.486285 | 6.4:+63157696 | MS.gene66341:CDS |
| AAGGAAATAGTTGAAACTAA+TGG | 0.493872 | 6.4:+63157900 | MS.gene66341:CDS |
| AGTGCTCTCATATGGCTGAC+AGG | 0.495608 | 6.4:+63157874 | MS.gene66341:CDS |
| CACTATTCTGTGCCAAAGCA+GGG | 0.510201 | 6.4:+63157733 | MS.gene66341:CDS |
| CAAGAAATATCCCATCCATT+CGG | 0.524018 | 6.4:-63158121 | None:intergenic |
| TAGTTCTTGATGTCGGTGCC+GGG | 0.525835 | 6.4:+63157697 | MS.gene66341:CDS |
| TCAAGTATTCATTGAATGGC+AGG | 0.530106 | 6.4:+63159731 | MS.gene66341:CDS |
| CAGGCGATGCAATGCTTCGA+GGG | 0.549835 | 6.4:+63159750 | MS.gene66341:CDS |
| TAGTGATAAAATTCCAGTCC+CGG | 0.559941 | 6.4:-63157715 | None:intergenic |
| GCAGGCGATGCAATGCTTCG+AGG | 0.569433 | 6.4:+63159749 | MS.gene66341:CDS |
| ATCAAAGTAGTAATCAGCGC+TGG | 0.573071 | 6.4:-63155891 | None:intergenic |
| GATAGAGTGATGCAATATCT+GGG | 0.576462 | 6.4:-63158325 | None:intergenic |
| TCATATGGCTGACAGGGCAA+AGG | 0.579225 | 6.4:+63157881 | MS.gene66341:CDS |
| TTGATATAATCATTTCCGAA+TGG | 0.588889 | 6.4:+63158106 | MS.gene66341:CDS |
| AATAAAGTAGTTCTTGATGT+CGG | 0.594677 | 6.4:+63157690 | MS.gene66341:CDS |
| GATGTCTTGACCATTTGTGA+GGG | 0.596606 | 6.4:+63159640 | MS.gene66341:CDS |
| GTCAACCAGAGGCTCCATCA+AGG | 0.601626 | 6.4:-63158693 | None:intergenic |
| ATAATCATTTCCGAATGGAT+GGG | 0.608420 | 6.4:+63158111 | MS.gene66341:CDS |
| GTAATCTTTATCTTCAATGG+CGG | 0.617207 | 6.4:-63158351 | None:intergenic |
| AACGAACTGTCAGCTACTCA+AGG | 0.617885 | 6.4:+63158739 | MS.gene66341:CDS |
| GTGCTCTCATATGGCTGACA+GGG | 0.621520 | 6.4:+63157875 | MS.gene66341:CDS |
| TGTCTTGACCATTTGTGAGG+GGG | 0.625821 | 6.4:+63159642 | MS.gene66341:CDS |
| CAAGATCGCGGAGTACACAT+TGG | 0.628631 | 6.4:+63159593 | MS.gene66341:CDS |
| TGGTCAACTGTGTCAACCAG+AGG | 0.637964 | 6.4:-63158704 | None:intergenic |
| TATTTGCAGGGCCAAGATCG+CGG | 0.646643 | 6.4:+63159581 | MS.gene66341:intron |
| ATGTCTTGACCATTTGTGAG+GGG | 0.652961 | 6.4:+63159641 | MS.gene66341:CDS |
| AGATGTCTTGACCATTTGTG+AGG | 0.654125 | 6.4:+63159639 | MS.gene66341:CDS |
| AGCATTATATCAACATCCCG+AGG | 0.654468 | 6.4:-63159709 | None:intergenic |
| ACTATTCTGTGCCAAAGCAG+GGG | 0.658809 | 6.4:+63157734 | MS.gene66341:CDS |
| AACCTCGACCAATCAATGGG+TGG | 0.673476 | 6.4:+63155839 | None:intergenic |
| AATTGTAGGGAGCATGACTG+TGG | 0.688544 | 6.4:+63159669 | MS.gene66341:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTTAAAAAAAGAAAATT+GGG | + | chr6.4:63159198-63159217 | MS.gene66341:intron | 10.0% |
| !! | TATTCTTAAAAAAAGAAAAT+TGG | + | chr6.4:63159197-63159216 | MS.gene66341:intron | 10.0% |
| !!! | AAAAAAAATCATTTTTTTTG+GGG | - | chr6.4:63155969-63155988 | None:intergenic | 10.0% |
| !!! | AAAAAATGATTTTTTTTATC+TGG | + | chr6.4:63155972-63155991 | MS.gene66341:intron | 10.0% |
| !!! | AAAAATGATTTTTTTTATCT+GGG | + | chr6.4:63155973-63155992 | MS.gene66341:intron | 10.0% |
| !! | AAAAATTAATGAAGATAGTA+AGG | - | chr6.4:63156535-63156554 | None:intergenic | 15.0% |
| !! | AAACAAAACTAAAAATTTCA+AGG | - | chr6.4:63158552-63158571 | None:intergenic | 15.0% |
| !! | AATTAACCTTTGTATTTAAA+TGG | + | chr6.4:63157064-63157083 | MS.gene66341:intron | 15.0% |
| !! | TGTTAAATTAATAAACTTGA+TGG | + | chr6.4:63156019-63156038 | MS.gene66341:intron | 15.0% |
| !! | TTCTTAAAAAAAGAAAATTG+GGG | + | chr6.4:63159199-63159218 | MS.gene66341:intron | 15.0% |
| !!! | AAAAAAATCATTTTTTTTGG+GGG | - | chr6.4:63155968-63155987 | None:intergenic | 15.0% |
| !!! | ATTCATTTTTATCATTTTAG+TGG | + | chr6.4:63159528-63159547 | MS.gene66341:intron | 15.0% |
| !! | AAAACAAATTGACAACAATT+TGG | + | chr6.4:63156941-63156960 | MS.gene66341:intron | 20.0% |
| !! | AAAACGTTATTTATCAGAAT+AGG | + | chr6.4:63157655-63157674 | MS.gene66341:CDS | 20.0% |
| !! | AAATGGTATTATAACAAAGA+CGG | - | chr6.4:63159493-63159512 | None:intergenic | 20.0% |
| !! | ATAAGTTATTTATCCAAACA+GGG | - | chr6.4:63156603-63156622 | None:intergenic | 20.0% |
| !! | ATTATACATAAGCTCTTATA+CGG | - | chr6.4:63156640-63156659 | None:intergenic | 20.0% |
| !! | GAAATGATTATATCAACTTT+AGG | - | chr6.4:63158102-63158121 | None:intergenic | 20.0% |
| !! | TACGTAAAAATTAACAACAT+CGG | - | chr6.4:63156850-63156869 | None:intergenic | 20.0% |
| !! | TATAAGTTATTTATCCAAAC+AGG | - | chr6.4:63156604-63156623 | None:intergenic | 20.0% |
| !! | TCAATAAAGTTGTTATCAAA+TGG | + | chr6.4:63156343-63156362 | MS.gene66341:intron | 20.0% |
| !! | TTTGTAATCTTTATCTTCAA+TGG | - | chr6.4:63158357-63158376 | None:intergenic | 20.0% |
| !!! | AATTTTAAAACTGTTCCAAA+TGG | + | chr6.4:63159259-63159278 | MS.gene66341:intron | 20.0% |
| !!! | ATTAAATTGCTGTTTAGAAT+TGG | + | chr6.4:63156566-63156585 | MS.gene66341:intron | 20.0% |
| !!! | ATTTTAAAACTGTTCCAAAT+GGG | + | chr6.4:63159260-63159279 | MS.gene66341:intron | 20.0% |
| !!! | ATTTTCAGTATATTACCTTT+TGG | + | chr6.4:63157971-63157990 | MS.gene66341:intron | 20.0% |
| !!! | CATGTATTTTTTCTGAAAAT+CGG | + | chr6.4:63159414-63159433 | MS.gene66341:intron | 20.0% |
| !!! | CTTTTTTTTTCTTTTTGTGT+AGG | + | chr6.4:63158283-63158302 | MS.gene66341:intron | 20.0% |
| !!! | GATGAAATTTTCTTTTCATT+TGG | + | chr6.4:63158841-63158860 | MS.gene66341:intron | 20.0% |
| !!! | GTTAATAAAGTTTGAAATCA+TGG | + | chr6.4:63156472-63156491 | MS.gene66341:intron | 20.0% |
| !!! | TAATTCGACAACAATTTTTT+TGG | + | chr6.4:63156450-63156469 | MS.gene66341:intron | 20.0% |
| !!! | TTGTTATAATACCATTTTAG+TGG | + | chr6.4:63159496-63159515 | MS.gene66341:intron | 20.0% |
| ! | AAATGGTACAAAAATTTGGT+TGG | + | chr6.4:63157175-63157194 | MS.gene66341:intron | 25.0% |
| ! | AACTGTAGAAAACAACATTA+TGG | - | chr6.4:63158034-63158053 | None:intergenic | 25.0% |
| ! | AAGGAAATAGTTGAAACTAA+TGG | + | chr6.4:63157900-63157919 | MS.gene66341:CDS | 25.0% |
| ! | AATAAAGTAGTTCTTGATGT+CGG | + | chr6.4:63157690-63157709 | MS.gene66341:CDS | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | + | chr6.4:63156317-63156336 | MS.gene66341:intron | 25.0% |
| ! | AATTGTACAGTTCAAAATCA+TGG | + | chr6.4:63156970-63156989 | MS.gene66341:intron | 25.0% |
| ! | CACAAAATGGTACAAAAATT+TGG | + | chr6.4:63157171-63157190 | MS.gene66341:intron | 25.0% |
| ! | GAAACTAATGGTTATTCTAA+AGG | + | chr6.4:63157912-63157931 | MS.gene66341:CDS | 25.0% |
| ! | TAAAAAAAGAAAATTGGGGA+GGG | + | chr6.4:63159203-63159222 | MS.gene66341:intron | 25.0% |
| ! | TAAAACCAATTCTTAACAAC+TGG | - | chr6.4:63157435-63157454 | None:intergenic | 25.0% |
| ! | TGTGTACATATATATTTGCA+GGG | + | chr6.4:63159569-63159588 | MS.gene66341:intron | 25.0% |
| ! | TTAAAAAAAGAAAATTGGGG+AGG | + | chr6.4:63159202-63159221 | MS.gene66341:intron | 25.0% |
| ! | TTATGCATGTTGTAAATACA+CGG | + | chr6.4:63157470-63157489 | MS.gene66341:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAAGAA+TGG | - | chr6.4:63156305-63156324 | None:intergenic | 25.0% |
| ! | TTGATATAATCATTTCCGAA+TGG | + | chr6.4:63158106-63158125 | MS.gene66341:CDS | 25.0% |
| ! | TTGTGTACATATATATTTGC+AGG | + | chr6.4:63159568-63159587 | MS.gene66341:intron | 25.0% |
| !! | AATTTCAAGGTTTTCAACAA+CGG | - | chr6.4:63158539-63158558 | None:intergenic | 25.0% |
| !! | ACAAAGTGTCATAAATTGAT+GGG | + | chr6.4:63159045-63159064 | MS.gene66341:CDS | 25.0% |
| !! | ATTATATCAACTTTAGGAAC+AGG | - | chr6.4:63158096-63158115 | None:intergenic | 25.0% |
| !! | TACAAAGTGTCATAAATTGA+TGG | + | chr6.4:63159044-63159063 | MS.gene66341:CDS | 25.0% |
| !!! | AATAACGTTTTGATATGTCT+TGG | - | chr6.4:63157646-63157665 | None:intergenic | 25.0% |
| !!! | ACAGTTATAACAGTTTTGAA+AGG | + | chr6.4:63158048-63158067 | MS.gene66341:intron | 25.0% |
| !!! | ATAAACTTGATGGCTAATTT+TGG | + | chr6.4:63156029-63156048 | MS.gene66341:intron | 25.0% |
| !!! | CAGTTATAACAGTTTTGAAA+GGG | + | chr6.4:63158049-63158068 | MS.gene66341:intron | 25.0% |
| !!! | TGTTTGTTTTTGTTTTTGCA+GGG | + | chr6.4:63156055-63156074 | MS.gene66341:intron | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr6.4:63156318-63156337 | None:intergenic | 25.0% |
| AAAAAAAGAAAATTGGGGAG+GGG | + | chr6.4:63159204-63159223 | MS.gene66341:intron | 30.0% | |
| AAAAGAATGGAGAGAGAAAA+AGG | - | chr6.4:63156292-63156311 | None:intergenic | 30.0% | |
| AAAATGATATTTGTGCCATC+AGG | + | chr6.4:63158577-63158596 | MS.gene66341:intron | 30.0% | |
| AAAATTGACAGCAATTTGGA+TGG | - | chr6.4:63157321-63157340 | None:intergenic | 30.0% | |
| ACTCAATCATATTTAGCAAG+AGG | - | chr6.4:63158408-63158427 | None:intergenic | 30.0% | |
| ACTTCAGTTCTTTATCTTTG+TGG | + | chr6.4:63159093-63159112 | MS.gene66341:intron | 30.0% | |
| AGAAAGTTAAATACACCTGA+TGG | - | chr6.4:63158595-63158614 | None:intergenic | 30.0% | |
| AGCAAAAATTGACAGCAATT+TGG | - | chr6.4:63157325-63157344 | None:intergenic | 30.0% | |
| ATAATCATTTCCGAATGGAT+GGG | + | chr6.4:63158111-63158130 | MS.gene66341:CDS | 30.0% | |
| ATGCTCAAGTATTCATTGAA+TGG | + | chr6.4:63159727-63159746 | MS.gene66341:CDS | 30.0% | |
| CAAATTGACAACAATTTGGT+TGG | + | chr6.4:63156945-63156964 | MS.gene66341:intron | 30.0% | |
| GACATAATTCAAAACCCATT+TGG | - | chr6.4:63159277-63159296 | None:intergenic | 30.0% | |
| GAGAAAAGAAATTTGCATGT+CGG | - | chr6.4:63158480-63158499 | None:intergenic | 30.0% | |
| GAGAGAAAATTGTCAAAAAG+TGG | - | chr6.4:63156236-63156255 | None:intergenic | 30.0% | |
| GATAAAGAACTGAAGTAGAA+AGG | - | chr6.4:63159089-63159108 | None:intergenic | 30.0% | |
| GCTTATTTGAACTTATCTAC+TGG | - | chr6.4:63156814-63156833 | None:intergenic | 30.0% | |
| GGGATTATTATCAATTAGTG+TGG | + | chr6.4:63159226-63159245 | MS.gene66341:intron | 30.0% | |
| GTAATCTTTATCTTCAATGG+CGG | - | chr6.4:63158354-63158373 | None:intergenic | 30.0% | |
| GTTAACGCAGTTTAAATATG+AGG | - | chr6.4:63157299-63157318 | None:intergenic | 30.0% | |
| TACATTGTTCCAAACTGATA+TGG | - | chr6.4:63158639-63158658 | None:intergenic | 30.0% | |
| TATAATCATTTCCGAATGGA+TGG | + | chr6.4:63158110-63158129 | MS.gene66341:CDS | 30.0% | |
| TCAAATAAGCCTATGCAAAT+AGG | + | chr6.4:63156824-63156843 | MS.gene66341:intron | 30.0% | |
| TCCATGATAGCTTATGAAAA+CGG | - | chr6.4:63156712-63156731 | None:intergenic | 30.0% | |
| TGAACTTGAAACATAAGAAG+AGG | - | chr6.4:63156117-63156136 | None:intergenic | 30.0% | |
| TGTATGAAACATACAATGCA+AGG | - | chr6.4:63158807-63158826 | None:intergenic | 30.0% | |
| TTAACTGAACTGAAAAGAAC+TGG | + | chr6.4:63159368-63159387 | MS.gene66341:intron | 30.0% | |
| TTCCAAACTGATATGGAAAA+TGG | - | chr6.4:63158632-63158651 | None:intergenic | 30.0% | |
| TTGACGCCATTTAAATACAA+AGG | - | chr6.4:63157073-63157092 | None:intergenic | 30.0% | |
| TTTGATTCTTACTCTCACTT+TGG | + | chr6.4:63155908-63155927 | MS.gene66341:CDS | 30.0% | |
| TTTGGGAGGTAAATAAGTAT+TGG | - | chr6.4:63158457-63158476 | None:intergenic | 30.0% | |
| ! | GTTTTCCAGTTGTTAAGAAT+TGG | + | chr6.4:63157427-63157446 | MS.gene66341:intron | 30.0% |
| ! | TATTCTTTTCATGCTTGATC+TGG | + | chr6.4:63157555-63157574 | MS.gene66341:intron | 30.0% |
| ! | TCAGTTTGGAACAATGTATA+TGG | + | chr6.4:63158641-63158660 | MS.gene66341:intron | 30.0% |
| ! | TGTAAGTACATTGAAAGCAT+TGG | + | chr6.4:63156875-63156894 | MS.gene66341:intron | 30.0% |
| ! | TTCAGTATATTACCTTTTGG+TGG | + | chr6.4:63157974-63157993 | MS.gene66341:intron | 30.0% |
| ! | TTCCATTTTCCATATCAGTT+TGG | + | chr6.4:63158627-63158646 | MS.gene66341:intron | 30.0% |
| ! | TTTTGTCATTGGAATCATCA+AGG | - | chr6.4:63155871-63155890 | None:intergenic | 30.0% |
| !! | GAGGTAAATAAGTATTGGTT+TGG | - | chr6.4:63158452-63158471 | None:intergenic | 30.0% |
| !!! | CTGTTTGTTTTTGTTTTTGC+AGG | + | chr6.4:63156054-63156073 | MS.gene66341:intron | 30.0% |
| AAAAAAGAAAATTGGGGAGG+GGG | + | chr6.4:63159205-63159224 | MS.gene66341:intron | 35.0% | |
| ACTACTTATCAACACGAGTA+AGG | - | chr6.4:63158212-63158231 | None:intergenic | 35.0% | |
| AGATAGAGTGATGCAATATC+TGG | - | chr6.4:63158329-63158348 | None:intergenic | 35.0% | |
| ATATTGCATGTACCAGAATC+TGG | + | chr6.4:63158239-63158258 | MS.gene66341:intron | 35.0% | |
| ATTTCCTGCAATGTGAAAAC+AGG | - | chr6.4:63157603-63157622 | None:intergenic | 35.0% | |
| CAAGAAATATCCCATCCATT+CGG | - | chr6.4:63158124-63158143 | None:intergenic | 35.0% | |
| CCCAAATAAAAAGAATCCTC+GGG | + | chr6.4:63159693-63159712 | MS.gene66341:CDS | 35.0% | |
| CCCCAAATAAAAAGAATCCT+CGG | + | chr6.4:63159692-63159711 | MS.gene66341:CDS | 35.0% | |
| GAAACAAACAGTCCTATATC+TGG | + | chr6.4:63159615-63159634 | MS.gene66341:CDS | 35.0% | |
| GACATCTCAAAAATGTCTTC+AGG | + | chr6.4:63158934-63158953 | MS.gene66341:CDS | 35.0% | |
| GATAGAGTGATGCAATATCT+GGG | - | chr6.4:63158328-63158347 | None:intergenic | 35.0% | |
| TAGTGATAAAATTCCAGTCC+CGG | - | chr6.4:63157718-63157737 | None:intergenic | 35.0% | |
| TCAAGACATCTTCCAGATAT+AGG | - | chr6.4:63159630-63159649 | None:intergenic | 35.0% | |
| TCAAGTATTCATTGAATGGC+AGG | + | chr6.4:63159731-63159750 | MS.gene66341:CDS | 35.0% | |
| TGCGTGTGCACAATTTAAAA+TGG | - | chr6.4:63157849-63157868 | None:intergenic | 35.0% | |
| ! | AAGAAATTTGCATGTCGGTT+TGG | - | chr6.4:63158475-63158494 | None:intergenic | 35.0% |
| ! | AGTATATTACCTTTTGGTGG+AGG | + | chr6.4:63157977-63157996 | MS.gene66341:intron | 35.0% |
| ! | ATTTTAAATTGTGCACACGC+AGG | + | chr6.4:63157848-63157867 | MS.gene66341:intron | 35.0% |
| ! | GCTGTGTTAATTTGACACAT+TGG | + | chr6.4:63156917-63156936 | MS.gene66341:intron | 35.0% |
| ! | GCTGTGTTATTGACACAAAA+TGG | + | chr6.4:63157158-63157177 | MS.gene66341:intron | 35.0% |
| ! | GTATATTACCTTTTGGTGGA+GGG | + | chr6.4:63157978-63157997 | MS.gene66341:intron | 35.0% |
| ! | TCCCGAGGATTCTTTTTATT+TGG | - | chr6.4:63159697-63159716 | None:intergenic | 35.0% |
| ! | TTTATTTCTCGTGATGCTCT+TGG | + | chr6.4:63157529-63157548 | MS.gene66341:intron | 35.0% |
| ! | TTTTCATGCTTGATCTGGAA+GGG | + | chr6.4:63157560-63157579 | MS.gene66341:intron | 35.0% |
| !! | AGAAATTTGCATGTCGGTTT+GGG | - | chr6.4:63158474-63158493 | None:intergenic | 35.0% |
| !! | CATAAAAGCATCATCAGAAC+TGG | - | chr6.4:63158775-63158794 | None:intergenic | 35.0% |
| !! | CCCGAGGATTCTTTTTATTT+GGG | - | chr6.4:63159696-63159715 | None:intergenic | 35.0% |
| !! | CCGAGGATTCTTTTTATTTG+GGG | - | chr6.4:63159695-63159714 | None:intergenic | 35.0% |
| !! | TTGTGGTTTGCTTTGTCAAT+AGG | + | chr6.4:63159110-63159129 | MS.gene66341:intron | 35.0% |
| !!! | AGACATTTTTGAGATGTCCA+TGG | - | chr6.4:63158932-63158951 | None:intergenic | 35.0% |
| AAAAAGAAAATTGGGGAGGG+GGG | + | chr6.4:63159206-63159225 | MS.gene66341:intron | 40.0% | |
| AAAGCTGACAGCAATTTGGA+TGG | - | chr6.4:63157096-63157115 | None:intergenic | 40.0% | |
| AACAAAGACGGAACCACAAA+TGG | - | chr6.4:63159481-63159500 | None:intergenic | 40.0% | |
| ACAAAGACGGAACCACAAAT+GGG | - | chr6.4:63159480-63159499 | None:intergenic | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | - | chr6.4:63156282-63156301 | None:intergenic | 40.0% | |
| AGATGTCTTGACCATTTGTG+AGG | + | chr6.4:63159639-63159658 | MS.gene66341:CDS | 40.0% | |
| AGCATTATATCAACATCCCG+AGG | - | chr6.4:63159712-63159731 | None:intergenic | 40.0% | |
| ATCAAAGTAGTAATCAGCGC+TGG | - | chr6.4:63155894-63155913 | None:intergenic | 40.0% | |
| ATGTCTTGACCATTTGTGAG+GGG | + | chr6.4:63159641-63159660 | MS.gene66341:CDS | 40.0% | |
| CACATTGCAGGAAATGTTGA+AGG | + | chr6.4:63157608-63157627 | MS.gene66341:intron | 40.0% | |
| CAGCTTGTATAGACAGTTCT+AGG | + | chr6.4:63156179-63156198 | MS.gene66341:intron | 40.0% | |
| GACAAAAGCTGACAGCAATT+TGG | - | chr6.4:63157100-63157119 | None:intergenic | 40.0% | |
| GATGTCTTGACCATTTGTGA+GGG | + | chr6.4:63159640-63159659 | MS.gene66341:CDS | 40.0% | |
| GTTCATCTTTGTTCAGTCCA+TGG | + | chr6.4:63158912-63158931 | MS.gene66341:intron | 40.0% | |
| TTCAACAGTCTTCCCATTTG+TGG | + | chr6.4:63159465-63159484 | MS.gene66341:intron | 40.0% | |
| ! | CTAACCTGTTTTCACATTGC+AGG | + | chr6.4:63157596-63157615 | MS.gene66341:intron | 40.0% |
| ! | CTTTTCATGCTTGATCTGGA+AGG | + | chr6.4:63157559-63157578 | MS.gene66341:intron | 40.0% |
| ! | CTTTTTGTGTAGGTCGATGA+TGG | + | chr6.4:63158293-63158312 | MS.gene66341:intron | 40.0% |
| ! | GGTTTGCTTTGTCAATAGGA+AGG | + | chr6.4:63159114-63159133 | MS.gene66341:intron | 40.0% |
| ! | GGTTTTACAATGTCCCTGTT+TGG | + | chr6.4:63156587-63156606 | MS.gene66341:intron | 40.0% |
| !! | AAATTGATGGGCTTCTCAAC+AGG | + | chr6.4:63159057-63159076 | MS.gene66341:CDS | 40.0% |
| !! | GCCGTTTTCATAAGCTATCA+TGG | + | chr6.4:63156708-63156727 | MS.gene66341:intron | 40.0% |
| !! | TATCATTTTAGTGGCGAGTG+TGG | + | chr6.4:63159537-63159556 | MS.gene66341:intron | 40.0% |
| AACGAACTGTCAGCTACTCA+AGG | + | chr6.4:63158739-63158758 | MS.gene66341:CDS | 45.0% | |
| AAGTGATGACCACCAGATTC+TGG | - | chr6.4:63158254-63158273 | None:intergenic | 45.0% | |
| AATTGTCTCCCCCTCACAAA+TGG | - | chr6.4:63159653-63159672 | None:intergenic | 45.0% | |
| ACTATTCTGTGCCAAAGCAG+GGG | + | chr6.4:63157734-63157753 | MS.gene66341:CDS | 45.0% | |
| AGTTCGTTGCGATCTGATTC+TGG | - | chr6.4:63158727-63158746 | None:intergenic | 45.0% | |
| ATCCACACTCGCCACTAAAA+TGG | - | chr6.4:63159510-63159529 | None:intergenic | 45.0% | |
| CAACATCGGCCTATTTGCAT+AGG | - | chr6.4:63156836-63156855 | None:intergenic | 45.0% | |
| CACATGATGTGTCAGCTCAA+TGG | - | chr6.4:63159327-63159346 | None:intergenic | 45.0% | |
| CACTATTCTGTGCCAAAGCA+GGG | + | chr6.4:63157733-63157752 | MS.gene66341:CDS | 45.0% | |
| CATCAAGAAGCAAGCCTTGA+TGG | + | chr6.4:63158679-63158698 | MS.gene66341:CDS | 45.0% | |
| CGAGCAGCAACAAGCTTAAA+AGG | - | chr6.4:63158979-63158998 | None:intergenic | 45.0% | |
| TCACTATTCTGTGCCAAAGC+AGG | + | chr6.4:63157732-63157751 | MS.gene66341:CDS | 45.0% | |
| TGCTCTTTGCACGTGACAAA+TGG | + | chr6.4:63158169-63158188 | MS.gene66341:CDS | 45.0% | |
| TGTCTTGACCATTTGTGAGG+GGG | + | chr6.4:63159642-63159661 | MS.gene66341:CDS | 45.0% | |
| TTGCATGTACCAGAATCTGG+TGG | + | chr6.4:63158242-63158261 | MS.gene66341:intron | 45.0% | |
| ! | AATTGTAGGGAGCATGACTG+TGG | + | chr6.4:63159669-63159688 | MS.gene66341:CDS | 45.0% |
| !! | AATTTGCATGTCGGTTTGGG+AGG | - | chr6.4:63158471-63158490 | None:intergenic | 45.0% |
| !! | TACCATTTTAGTGGCGAGTG+TGG | + | chr6.4:63159505-63159524 | MS.gene66341:intron | 45.0% |
| !!! | ATCAGCGCTGGTTTTGTCAT+TGG | - | chr6.4:63155882-63155901 | None:intergenic | 45.0% |
| !!! | ATAAAAAAAATCATTTTTTT+TGG | - | chr6.4:63155971-63155990 | None:intergenic | 5.0% |
| !!! | TAAAAAAAATCATTTTTTTT+GGG | - | chr6.4:63155970-63155989 | None:intergenic | 5.0% |
| AGTGCTCTCATATGGCTGAC+AGG | + | chr6.4:63157874-63157893 | MS.gene66341:CDS | 50.0% | |
| CAAGATCGCGGAGTACACAT+TGG | + | chr6.4:63159593-63159612 | MS.gene66341:CDS | 50.0% | |
| CAATGTGTACTCCGCGATCT+TGG | - | chr6.4:63159595-63159614 | None:intergenic | 50.0% | |
| CGATCAATCCCTCCACCAAA+AGG | - | chr6.4:63157989-63158008 | None:intergenic | 50.0% | |
| GTAGTTCTTGATGTCGGTGC+CGG | + | chr6.4:63157696-63157715 | MS.gene66341:CDS | 50.0% | |
| GTGAGGGGGAGACAATTGTA+GGG | + | chr6.4:63159656-63159675 | MS.gene66341:CDS | 50.0% | |
| GTGCTCTCATATGGCTGACA+GGG | + | chr6.4:63157875-63157894 | MS.gene66341:CDS | 50.0% | |
| GTGGAGGGATTGATCGTGAA+GGG | + | chr6.4:63157993-63158012 | MS.gene66341:intron | 50.0% | |
| TATTTGCAGGGCCAAGATCG+CGG | + | chr6.4:63159581-63159600 | MS.gene66341:intron | 50.0% | |
| TCATATGGCTGACAGGGCAA+AGG | + | chr6.4:63157881-63157900 | MS.gene66341:CDS | 50.0% | |
| TGGTCAACTGTGTCAACCAG+AGG | - | chr6.4:63158707-63158726 | None:intergenic | 50.0% | |
| TGTGAGGGGGAGACAATTGT+AGG | + | chr6.4:63159655-63159674 | MS.gene66341:CDS | 50.0% | |
| ! | TAGTTCTTGATGTCGGTGCC+GGG | + | chr6.4:63157697-63157716 | MS.gene66341:CDS | 50.0% |
| !! | GCTATCATGGAGAGCGCTTA+TGG | + | chr6.4:63156721-63156740 | MS.gene66341:intron | 50.0% |
| CAGGCGATGCAATGCTTCGA+GGG | + | chr6.4:63159750-63159769 | MS.gene66341:CDS | 55.0% | |
| GCAGGTCGAGTGCTCTCATA+TGG | + | chr6.4:63157866-63157885 | MS.gene66341:intron | 55.0% | |
| GGTGGAGGGATTGATCGTGA+AGG | + | chr6.4:63157992-63158011 | MS.gene66341:intron | 55.0% | |
| GTCAACCAGAGGCTCCATCA+AGG | - | chr6.4:63158696-63158715 | None:intergenic | 55.0% | |
| GACATGTGCTGCCCCTGCTT+TGG | - | chr6.4:63157748-63157767 | None:intergenic | 60.0% | |
| GCAAGCCTTGATGGAGCCTC+TGG | + | chr6.4:63158688-63158707 | MS.gene66341:CDS | 60.0% | |
| GCAGGCGATGCAATGCTTCG+AGG | + | chr6.4:63159749-63159768 | MS.gene66341:CDS | 60.0% | |
| !! | CTTGATGTCGGTGCCGGGAC+TGG | + | chr6.4:63157702-63157721 | MS.gene66341:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 63155854 | 63159795 | 63155854 | ID=MS.gene66341 |
| chr6.4 | mRNA | 63155854 | 63159795 | 63155854 | ID=MS.gene66341.t1;Parent=MS.gene66341 |
| chr6.4 | exon | 63155854 | 63155929 | 63155854 | ID=MS.gene66341.t1.exon1;Parent=MS.gene66341.t1 |
| chr6.4 | CDS | 63155854 | 63155929 | 63155854 | ID=cds.MS.gene66341.t1;Parent=MS.gene66341.t1 |
| chr6.4 | exon | 63156076 | 63156086 | 63156076 | ID=MS.gene66341.t1.exon2;Parent=MS.gene66341.t1 |
| chr6.4 | CDS | 63156076 | 63156086 | 63156076 | ID=cds.MS.gene66341.t1;Parent=MS.gene66341.t1 |
| chr6.4 | exon | 63157618 | 63157773 | 63157618 | ID=MS.gene66341.t1.exon3;Parent=MS.gene66341.t1 |
| chr6.4 | CDS | 63157618 | 63157773 | 63157618 | ID=cds.MS.gene66341.t1;Parent=MS.gene66341.t1 |
| chr6.4 | exon | 63157870 | 63157933 | 63157870 | ID=MS.gene66341.t1.exon4;Parent=MS.gene66341.t1 |
| chr6.4 | CDS | 63157870 | 63157933 | 63157870 | ID=cds.MS.gene66341.t1;Parent=MS.gene66341.t1 |
| chr6.4 | exon | 63158052 | 63158194 | 63158052 | ID=MS.gene66341.t1.exon5;Parent=MS.gene66341.t1 |
| chr6.4 | CDS | 63158052 | 63158194 | 63158052 | ID=cds.MS.gene66341.t1;Parent=MS.gene66341.t1 |
| chr6.4 | exon | 63158305 | 63158392 | 63158305 | ID=MS.gene66341.t1.exon6;Parent=MS.gene66341.t1 |
| chr6.4 | CDS | 63158305 | 63158392 | 63158305 | ID=cds.MS.gene66341.t1;Parent=MS.gene66341.t1 |
| chr6.4 | exon | 63158645 | 63158760 | 63158645 | ID=MS.gene66341.t1.exon7;Parent=MS.gene66341.t1 |
| chr6.4 | CDS | 63158645 | 63158760 | 63158645 | ID=cds.MS.gene66341.t1;Parent=MS.gene66341.t1 |
| chr6.4 | exon | 63158928 | 63159078 | 63158928 | ID=MS.gene66341.t1.exon8;Parent=MS.gene66341.t1 |
| chr6.4 | CDS | 63158928 | 63159078 | 63158928 | ID=cds.MS.gene66341.t1;Parent=MS.gene66341.t1 |
| chr6.4 | exon | 63159590 | 63159795 | 63159590 | ID=MS.gene66341.t1.exon9;Parent=MS.gene66341.t1 |
| chr6.4 | CDS | 63159590 | 63159795 | 63159590 | ID=cds.MS.gene66341.t1;Parent=MS.gene66341.t1 |
| Gene Sequence |
| Protein sequence |
