Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75060.t1 | XP_003620880.2 | 99.7 | 306 | 1 | 0 | 1 | 306 | 78 | 383 | 4.50E-173 | 617.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75060.t1 | Q9SU94 | 82.7 | 306 | 53 | 0 | 1 | 306 | 85 | 390 | 3.9e-149 | 528.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75060.t1 | G7KJ80 | 99.7 | 306 | 1 | 0 | 1 | 306 | 78 | 383 | 3.2e-173 | 617.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene75060 | 0.800758 | 1.24E-48 | -1.69E-46 |
| MS.gene050114 | MS.gene75060 | 0.839867 | 1.23E-57 | -1.69E-46 |
| MS.gene050320 | MS.gene75060 | 0.814832 | 1.26E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene75060 | 0.812868 | 3.41E-51 | -1.69E-46 |
| MS.gene051746 | MS.gene75060 | 0.832987 | 6.91E-56 | -1.69E-46 |
| MS.gene051748 | MS.gene75060 | 0.84255 | 2.42E-58 | -1.69E-46 |
| MS.gene051756 | MS.gene75060 | 0.804324 | 2.28E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene75060 | 0.817908 | 2.58E-52 | -1.69E-46 |
| MS.gene051903 | MS.gene75060 | 0.844748 | 6.24E-59 | -1.69E-46 |
| MS.gene051975 | MS.gene75060 | 0.813732 | 2.21E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene75060 | 0.808985 | 2.37E-50 | -1.69E-46 |
| MS.gene053109 | MS.gene75060 | 0.821401 | 4.12E-53 | -1.69E-46 |
| MS.gene053381 | MS.gene75060 | 0.805828 | 1.11E-49 | -1.69E-46 |
| MS.gene053952 | MS.gene75060 | 0.800928 | 1.14E-48 | -1.69E-46 |
| MS.gene05469 | MS.gene75060 | 0.81824 | 2.17E-52 | -1.69E-46 |
| MS.gene055603 | MS.gene75060 | 0.84618 | 2.55E-59 | -1.69E-46 |
| MS.gene056403 | MS.gene75060 | 0.868605 | 5.77E-66 | -1.69E-46 |
| MS.gene056605 | MS.gene75060 | 0.866901 | 2.03E-65 | -1.69E-46 |
| MS.gene056631 | MS.gene75060 | 0.802925 | 4.45E-49 | -1.69E-46 |
| MS.gene056638 | MS.gene75060 | 0.801478 | 8.84E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene75060 | 0.83743 | 5.22E-57 | -1.69E-46 |
| MS.gene057094 | MS.gene75060 | 0.824438 | 8.07E-54 | -1.69E-46 |
| MS.gene05781 | MS.gene75060 | 0.805583 | 1.24E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene75060 | 0.816694 | 4.85E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene75060 | 0.808672 | 2.76E-50 | -1.69E-46 |
| MS.gene058908 | MS.gene75060 | 0.819763 | 9.79E-53 | -1.69E-46 |
| MS.gene058911 | MS.gene75060 | 0.828647 | 8.00E-55 | -1.69E-46 |
| MS.gene059901 | MS.gene75060 | -0.813842 | 2.09E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene75060 | 0.825653 | 4.17E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene75060 | 0.874396 | 6.98E-68 | -1.69E-46 |
| MS.gene060586 | MS.gene75060 | 0.803572 | 3.27E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene75060 | 0.836402 | 9.55E-57 | -1.69E-46 |
| MS.gene060830 | MS.gene75060 | 0.835447 | 1.67E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99744 | MS.gene75060 | PPI |
| MS.gene029242 | MS.gene75060 | PPI |
| MS.gene66341 | MS.gene75060 | PPI |
| MS.gene038866 | MS.gene75060 | PPI |
| MS.gene003428 | MS.gene75060 | PPI |
| MS.gene52139 | MS.gene75060 | PPI |
| MS.gene75060 | MS.gene001986 | PPI |
| MS.gene29219 | MS.gene75060 | PPI |
| MS.gene75062 | MS.gene75060 | PPI |
| MS.gene75060 | MS.gene053058 | PPI |
| MS.gene75060 | MS.gene41916 | PPI |
| MS.gene056257 | MS.gene75060 | PPI |
| MS.gene75060 | MS.gene032628 | PPI |
| MS.gene75060 | MS.gene91127 | PPI |
| MS.gene059422 | MS.gene75060 | PPI |
| MS.gene75060 | MS.gene030293 | PPI |
| MS.gene75060 | MS.gene058030 | PPI |
| MS.gene08205 | MS.gene75060 | PPI |
| MS.gene75060 | MS.gene054186 | PPI |
| MS.gene68888 | MS.gene75060 | PPI |
| MS.gene75060 | MS.gene067809 | PPI |
| MS.gene75060 | MS.gene026173 | PPI |
| MS.gene75060 | MS.gene64396 | PPI |
| MS.gene75060 | MS.gene82828 | PPI |
| MS.gene037324 | MS.gene75060 | PPI |
| MS.gene003452 | MS.gene75060 | PPI |
| MS.gene51868 | MS.gene75060 | PPI |
| MS.gene067338 | MS.gene75060 | PPI |
| MS.gene058013 | MS.gene75060 | PPI |
| MS.gene83327 | MS.gene75060 | PPI |
| MS.gene75060 | MS.gene88611 | PPI |
| MS.gene064036 | MS.gene75060 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75060.t1 | MTR_6g091770 | 99.673 | 306 | 1 | 0 | 1 | 306 | 78 | 383 | 0.0 | 639 |
| MS.gene75060.t1 | MTR_1g113940 | 35.048 | 311 | 181 | 6 | 1 | 293 | 25 | 332 | 4.05e-52 | 174 |
| MS.gene75060.t1 | MTR_3g013960 | 37.458 | 299 | 149 | 10 | 1 | 264 | 269 | 564 | 3.88e-51 | 178 |
| MS.gene75060.t1 | MTR_4g119900 | 36.299 | 281 | 166 | 7 | 1 | 270 | 155 | 433 | 2.12e-50 | 174 |
| MS.gene75060.t1 | MTR_4g119900 | 36.299 | 281 | 166 | 7 | 1 | 270 | 155 | 433 | 2.76e-50 | 174 |
| MS.gene75060.t1 | MTR_2g054880 | 32.836 | 335 | 192 | 10 | 1 | 303 | 39 | 372 | 2.98e-50 | 171 |
| MS.gene75060.t1 | MTR_2g436780 | 35.231 | 281 | 169 | 7 | 1 | 270 | 157 | 435 | 7.03e-48 | 168 |
| MS.gene75060.t1 | MTR_2g436780 | 35.231 | 281 | 169 | 7 | 1 | 270 | 157 | 435 | 9.05e-48 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75060.t1 | AT4G29510 | 82.680 | 306 | 53 | 0 | 1 | 306 | 85 | 390 | 0.0 | 550 |
| MS.gene75060.t1 | AT2G19670 | 79.085 | 306 | 64 | 0 | 1 | 306 | 61 | 366 | 0.0 | 528 |
| MS.gene75060.t1 | AT3G20020 | 39.157 | 332 | 162 | 4 | 1 | 293 | 96 | 426 | 1.47e-74 | 235 |
| MS.gene75060.t1 | AT3G20020 | 39.210 | 329 | 160 | 4 | 1 | 290 | 96 | 423 | 7.04e-74 | 234 |
| MS.gene75060.t1 | AT3G20020 | 36.446 | 332 | 149 | 4 | 1 | 293 | 96 | 404 | 1.36e-62 | 204 |
| MS.gene75060.t1 | AT3G12270 | 37.801 | 291 | 156 | 8 | 1 | 269 | 258 | 545 | 2.06e-54 | 187 |
| MS.gene75060.t1 | AT1G04870 | 33.019 | 318 | 177 | 8 | 1 | 286 | 48 | 361 | 1.83e-51 | 174 |
| MS.gene75060.t1 | AT5G49020 | 34.202 | 307 | 189 | 7 | 1 | 296 | 162 | 466 | 1.23e-49 | 172 |
| MS.gene75060.t1 | AT5G49020 | 34.202 | 307 | 189 | 7 | 1 | 296 | 164 | 468 | 1.38e-49 | 172 |
| MS.gene75060.t1 | AT3G06930 | 33.663 | 303 | 188 | 7 | 1 | 292 | 161 | 461 | 1.72e-49 | 172 |
| MS.gene75060.t1 | AT3G06930 | 33.663 | 303 | 188 | 7 | 1 | 292 | 161 | 461 | 1.73e-49 | 172 |
| MS.gene75060.t1 | AT1G04870 | 29.008 | 262 | 150 | 8 | 57 | 286 | 1 | 258 | 2.42e-29 | 113 |
Find 54 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAAGAAGCAAGCCTTGA+TGG | 0.279886 | 6.3:+83779360 | MS.gene75060:CDS |
| TCAGTTTGGAACAATGTATA+TGG | 0.294266 | 6.3:+83779322 | MS.gene75060:intron |
| CGAGCAGCAACAAGCTTAAA+AGG | 0.295407 | 6.3:-83779658 | None:intergenic |
| AGATAGAGTGATGCAATATC+TGG | 0.297140 | 6.3:-83779005 | None:intergenic |
| GGAAATGATTATATCAACTT+TGG | 0.337090 | 6.3:-83778751 | None:intergenic |
| GAAACAAACAGTCCTATATC+TGG | 0.356556 | 6.3:+83780261 | MS.gene75060:CDS |
| GAAATGATTATATCAACTTT+GGG | 0.370774 | 6.3:-83778750 | None:intergenic |
| TTTGTAATCTTTATCTTCAA+TGG | 0.372756 | 6.3:-83779033 | None:intergenic |
| GACATGTGCTGCCCCTGCTT+TGG | 0.382365 | 6.3:-83778400 | None:intergenic |
| CAATGTGTACTCCGCGATCT+TGG | 0.388811 | 6.3:-83780238 | None:intergenic |
| AGTTCGTTGCGATCTGATTC+TGG | 0.393515 | 6.3:-83779405 | None:intergenic |
| ATTATATCAACTTTGGGAAC+AGG | 0.394493 | 6.3:-83778744 | None:intergenic |
| CTTGATGTCGGTGCCGGGAC+TGG | 0.401470 | 6.3:+83778357 | MS.gene75060:CDS |
| AAATTGATGGGCTTCTCAAC+AGG | 0.411678 | 6.3:+83779739 | MS.gene75060:CDS |
| AAAACGTTATTTATCAGAAT+AGG | 0.416237 | 6.3:+83778310 | MS.gene75060:CDS |
| TCAAGACATCTTCCAGATAT+AGG | 0.420611 | 6.3:-83780273 | None:intergenic |
| TACAAAGTGTCATAAATTGA+TGG | 0.424292 | 6.3:+83779726 | MS.gene75060:CDS |
| CACATTGCAGGAAATGTTGA+AGG | 0.429613 | 6.3:+83778263 | None:intergenic |
| TGCTCTTTGCACGTGACAAA+TGG | 0.430259 | 6.3:+83778820 | MS.gene75060:CDS |
| TCACTATTCTGTGCCAAAGC+AGG | 0.443662 | 6.3:+83778387 | MS.gene75060:CDS |
| ACAAAGTGTCATAAATTGAT+GGG | 0.472701 | 6.3:+83779727 | MS.gene75060:CDS |
| TATAATCATTTCCGAATGGA+TGG | 0.481760 | 6.3:+83778761 | MS.gene75060:CDS |
| ATGCTCAAGTATTCATTGAA+TGG | 0.485369 | 6.3:+83780373 | MS.gene75060:CDS |
| GTAGTTCTTGATGTCGGTGC+CGG | 0.486285 | 6.3:+83778351 | MS.gene75060:CDS |
| AGTGCTCTCATATGGCTGAC+AGG | 0.490903 | 6.3:+83778525 | MS.gene75060:CDS |
| AAGGAAATAGTTGAAACTAA+TGG | 0.493872 | 6.3:+83778551 | MS.gene75060:CDS |
| GAAACTAATGGTTATTCTGA+AGG | 0.507346 | 6.3:+83778563 | MS.gene75060:CDS |
| GCAGGTAGAGTGCTCTCATA+TGG | 0.508951 | 6.3:+83778517 | MS.gene75060:intron |
| CACTATTCTGTGCCAAAGCA+GGG | 0.510201 | 6.3:+83778388 | MS.gene75060:CDS |
| CAAGAAATATCCCATCCATT+CGG | 0.524018 | 6.3:-83778772 | None:intergenic |
| TAGTTCTTGATGTCGGTGCC+GGG | 0.525835 | 6.3:+83778352 | MS.gene75060:CDS |
| TCAAGTATTCATTGAATGGC+AGG | 0.530106 | 6.3:+83780377 | MS.gene75060:CDS |
| CAGGCGATGCAATGCTTCGA+GGG | 0.549835 | 6.3:+83780396 | MS.gene75060:CDS |
| TAGTGATAAAATTCCAGTCC+CGG | 0.559941 | 6.3:-83778370 | None:intergenic |
| GCAGGCGATGCAATGCTTCG+AGG | 0.569433 | 6.3:+83780395 | MS.gene75060:CDS |
| GATAGAGTGATGCAATATCT+GGG | 0.576462 | 6.3:-83779004 | None:intergenic |
| TCATATGGCTGACAGGGCAA+AGG | 0.579225 | 6.3:+83778532 | MS.gene75060:CDS |
| GTGCTCTCATATGGCTGACA+GGG | 0.582889 | 6.3:+83778526 | MS.gene75060:CDS |
| TTGATATAATCATTTCCGAA+TGG | 0.588889 | 6.3:+83778757 | MS.gene75060:CDS |
| AATAAAGTAGTTCTTGATGT+CGG | 0.594677 | 6.3:+83778345 | MS.gene75060:CDS |
| GATGTCTTGACCATTTGTGA+GGG | 0.596606 | 6.3:+83780286 | MS.gene75060:CDS |
| TGGTCAACTGTGTCAACAAG+AGG | 0.597351 | 6.3:-83779385 | None:intergenic |
| GTCAACAAGAGGCTCCATCA+AGG | 0.601626 | 6.3:-83779374 | None:intergenic |
| ATAATCATTTCCGAATGGAT+GGG | 0.608420 | 6.3:+83778762 | MS.gene75060:CDS |
| AACGAACTGTCAGCTACTCA+AGG | 0.616591 | 6.3:+83779420 | MS.gene75060:CDS |
| GTAATCTTTATCTTCAATGG+CGG | 0.617207 | 6.3:-83779030 | None:intergenic |
| TGTCTTGACCATTTGTGAGG+GGG | 0.625821 | 6.3:+83780288 | MS.gene75060:CDS |
| CAAGATCGCGGAGTACACAT+TGG | 0.628631 | 6.3:+83780239 | MS.gene75060:CDS |
| TATTTGCAGGGCCAAGATCG+CGG | 0.646643 | 6.3:+83780227 | MS.gene75060:intron |
| ATGTCTTGACCATTTGTGAG+GGG | 0.652961 | 6.3:+83780287 | MS.gene75060:CDS |
| AGATGTCTTGACCATTTGTG+AGG | 0.654125 | 6.3:+83780285 | MS.gene75060:CDS |
| AGCATTATATCAACATCCCG+AGG | 0.654468 | 6.3:-83780355 | None:intergenic |
| ACTATTCTGTGCCAAAGCAG+GGG | 0.658809 | 6.3:+83778389 | MS.gene75060:CDS |
| AATTGTAGGGAGCATGACTG+TGG | 0.688544 | 6.3:+83780315 | MS.gene75060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTTAAAAAAAGAAAATT+GGG | + | chr6.3:83779873-83779892 | MS.gene75060:intron | 10.0% |
| !! | TATTCTTAAAAAAAGAAAAT+TGG | + | chr6.3:83779872-83779891 | MS.gene75060:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGTGT+AGG | + | chr6.3:83778962-83778981 | MS.gene75060:intron | 10.0% |
| !! | AAATGATATTATAACAAAGA+CGG | - | chr6.3:83780139-83780158 | None:intergenic | 15.0% |
| !! | TTCTTAAAAAAAGAAAATTG+GGG | + | chr6.3:83779874-83779893 | MS.gene75060:intron | 15.0% |
| !!! | ATTCATTTTTATCATTTTAG+TGG | + | chr6.3:83780174-83780193 | MS.gene75060:intron | 15.0% |
| !!! | TTGTTATAATATCATTTTAG+TGG | + | chr6.3:83780142-83780161 | MS.gene75060:intron | 15.0% |
| !! | AAAACGTTATTTATCAGAAT+AGG | + | chr6.3:83778310-83778329 | MS.gene75060:CDS | 20.0% |
| !! | AACATTATGGTAATTATAGT+TGG | - | chr6.3:83778672-83778691 | None:intergenic | 20.0% |
| !! | ATTTGTGTTTAAACAAAACT+AGG | - | chr6.3:83779243-83779262 | None:intergenic | 20.0% |
| !! | GAAATGATTATATCAACTTT+GGG | - | chr6.3:83778753-83778772 | None:intergenic | 20.0% |
| !! | TTTGTAATCTTTATCTTCAA+TGG | - | chr6.3:83779036-83779055 | None:intergenic | 20.0% |
| !!! | AATTTTAAAACTGTTCCAAA+TGG | + | chr6.3:83779934-83779953 | MS.gene75060:intron | 20.0% |
| !!! | ATTTTAAAACTGTTCCAAAT+GGG | + | chr6.3:83779935-83779954 | MS.gene75060:intron | 20.0% |
| !!! | ATTTTCAGTATATTACCTTT+TGG | + | chr6.3:83778622-83778641 | MS.gene75060:intron | 20.0% |
| !!! | CATGTATTTTTTCTGAAAAT+CGG | + | chr6.3:83780060-83780079 | MS.gene75060:intron | 20.0% |
| !!! | GATGAAATTTTCTTTTCATT+TGG | + | chr6.3:83779523-83779542 | MS.gene75060:intron | 20.0% |
| !!! | TTTTTTTTTTTTTGTGTAGG+TGG | + | chr6.3:83778965-83778984 | MS.gene75060:intron | 20.0% |
| ! | AAACAAAACTAGGAATTTCA+AGG | - | chr6.3:83779233-83779252 | None:intergenic | 25.0% |
| ! | AACTGTAGAAAACAACATTA+TGG | - | chr6.3:83778685-83778704 | None:intergenic | 25.0% |
| ! | AAGGAAATAGTTGAAACTAA+TGG | + | chr6.3:83778551-83778570 | MS.gene75060:CDS | 25.0% |
| ! | AATAAAGTAGTTCTTGATGT+CGG | + | chr6.3:83778345-83778364 | MS.gene75060:CDS | 25.0% |
| ! | GGAAATGATTATATCAACTT+TGG | - | chr6.3:83778754-83778773 | None:intergenic | 25.0% |
| ! | TAAAAAAAGAAAATTGGGGA+GGG | + | chr6.3:83779878-83779897 | MS.gene75060:intron | 25.0% |
| ! | TGTGTACATATATATTTGCA+GGG | + | chr6.3:83780215-83780234 | MS.gene75060:intron | 25.0% |
| ! | TTAAAAAAAGAAAATTGGGG+AGG | + | chr6.3:83779877-83779896 | MS.gene75060:intron | 25.0% |
| ! | TTCCAAACTGATATAGAAAA+TGG | - | chr6.3:83779313-83779332 | None:intergenic | 25.0% |
| ! | TTGATATAATCATTTCCGAA+TGG | + | chr6.3:83778757-83778776 | MS.gene75060:CDS | 25.0% |
| ! | TTGTGTACATATATATTTGC+AGG | + | chr6.3:83780214-83780233 | MS.gene75060:intron | 25.0% |
| !! | ACAAAGTGTCATAAATTGAT+GGG | + | chr6.3:83779727-83779746 | MS.gene75060:CDS | 25.0% |
| !! | TACAAAGTGTCATAAATTGA+TGG | + | chr6.3:83779726-83779745 | MS.gene75060:CDS | 25.0% |
| !! | TTCCATTTTCTATATCAGTT+TGG | + | chr6.3:83779308-83779327 | MS.gene75060:intron | 25.0% |
| !!! | AATAACGTTTTGATATGTCT+TGG | - | chr6.3:83778301-83778320 | None:intergenic | 25.0% |
| !!! | ACAGTTATAACAGTTTTGAA+AGG | + | chr6.3:83778699-83778718 | MS.gene75060:intron | 25.0% |
| !!! | CAGTTATAACAGTTTTGAAA+GGG | + | chr6.3:83778700-83778719 | MS.gene75060:intron | 25.0% |
| AAAAAAAGAAAATTGGGGAG+GGG | + | chr6.3:83779879-83779898 | MS.gene75060:intron | 30.0% | |
| ACTCAATCATATTTAGCAAG+AGG | - | chr6.3:83779087-83779106 | None:intergenic | 30.0% | |
| ATAATCATTTCCGAATGGAT+GGG | + | chr6.3:83778762-83778781 | MS.gene75060:CDS | 30.0% | |
| ATCATGTGCAAATAAAGAAC+TGG | + | chr6.3:83780014-83780033 | MS.gene75060:intron | 30.0% | |
| ATGCTCAAGTATTCATTGAA+TGG | + | chr6.3:83780373-83780392 | MS.gene75060:CDS | 30.0% | |
| CAAATGATATTTGTGTCATC+AGG | + | chr6.3:83779258-83779277 | MS.gene75060:intron | 30.0% | |
| CAATTTCTCAATTCCGTATT+CGG | - | chr6.3:83779187-83779206 | None:intergenic | 30.0% | |
| CCACAAAAACTAAAGTAGAA+AGG | - | chr6.3:83779771-83779790 | None:intergenic | 30.0% | |
| CTTGTATTTCATTCCGAATA+CGG | + | chr6.3:83779171-83779190 | MS.gene75060:intron | 30.0% | |
| GAAACTAATGGTTATTCTGA+AGG | + | chr6.3:83778563-83778582 | MS.gene75060:CDS | 30.0% | |
| GACATAATTCAAAACCCATT+TGG | - | chr6.3:83779952-83779971 | None:intergenic | 30.0% | |
| GGGATTATTATCAATTAGTG+TGG | + | chr6.3:83779901-83779920 | MS.gene75060:intron | 30.0% | |
| GTAATCTTTATCTTCAATGG+CGG | - | chr6.3:83779033-83779052 | None:intergenic | 30.0% | |
| TATAATCATTTCCGAATGGA+TGG | + | chr6.3:83778761-83778780 | MS.gene75060:CDS | 30.0% | |
| TGCGTGTGCAAAATTTAAAA+TGG | - | chr6.3:83778500-83778519 | None:intergenic | 30.0% | |
| TTTCAGAGGCAAATAAGTAT+TGG | - | chr6.3:83779136-83779155 | None:intergenic | 30.0% | |
| ! | ATTATATCAACTTTGGGAAC+AGG | - | chr6.3:83778747-83778766 | None:intergenic | 30.0% |
| ! | ATTTTAAATTTTGCACACGC+AGG | + | chr6.3:83778499-83778518 | MS.gene75060:intron | 30.0% |
| ! | TCAGTTTGGAACAATGTATA+TGG | + | chr6.3:83779322-83779341 | MS.gene75060:intron | 30.0% |
| ! | TTCAGTATATTACCTTTTGG+CGG | + | chr6.3:83778625-83778644 | MS.gene75060:intron | 30.0% |
| !! | GTTTTGAATTATGTCACTTG+AGG | + | chr6.3:83779957-83779976 | MS.gene75060:intron | 30.0% |
| !!! | CCTTTCTACTTTAGTTTTTG+TGG | + | chr6.3:83779768-83779787 | MS.gene75060:intron | 30.0% |
| AAAAAAGAAAATTGGGGAGG+GGG | + | chr6.3:83779880-83779899 | MS.gene75060:intron | 35.0% | |
| AATTTGCATGTCAGTTTCAG+AGG | - | chr6.3:83779150-83779169 | None:intergenic | 35.0% | |
| AGATAGAGTGATGCAATATC+TGG | - | chr6.3:83779008-83779027 | None:intergenic | 35.0% | |
| ATATTGCATGTACCAGAATC+TGG | + | chr6.3:83778890-83778909 | MS.gene75060:intron | 35.0% | |
| CAAGAAATATCCCATCCATT+CGG | - | chr6.3:83778775-83778794 | None:intergenic | 35.0% | |
| CCCAAATAAAAAGAATCCTC+GGG | + | chr6.3:83780339-83780358 | MS.gene75060:CDS | 35.0% | |
| CCCCAAATAAAAAGAATCCT+CGG | + | chr6.3:83780338-83780357 | MS.gene75060:CDS | 35.0% | |
| GAAACAAACAGTCCTATATC+TGG | + | chr6.3:83780261-83780280 | MS.gene75060:CDS | 35.0% | |
| GACATCTCAAAAATGTCTTC+AGG | + | chr6.3:83779616-83779635 | MS.gene75060:CDS | 35.0% | |
| GATAGAGTGATGCAATATCT+GGG | - | chr6.3:83779007-83779026 | None:intergenic | 35.0% | |
| TAGTGATAAAATTCCAGTCC+CGG | - | chr6.3:83778373-83778392 | None:intergenic | 35.0% | |
| TCAAGACATCTTCCAGATAT+AGG | - | chr6.3:83780276-83780295 | None:intergenic | 35.0% | |
| TCAAGTATTCATTGAATGGC+AGG | + | chr6.3:83780377-83780396 | MS.gene75060:CDS | 35.0% | |
| ! | TCCCGAGGATTCTTTTTATT+TGG | - | chr6.3:83780343-83780362 | None:intergenic | 35.0% |
| !! | CATAAAAGCATCATCAGAAC+TGG | - | chr6.3:83779456-83779475 | None:intergenic | 35.0% |
| !! | CCCGAGGATTCTTTTTATTT+GGG | - | chr6.3:83780342-83780361 | None:intergenic | 35.0% |
| !! | CCGAGGATTCTTTTTATTTG+GGG | - | chr6.3:83780341-83780360 | None:intergenic | 35.0% |
| !! | GAGGCAAATAAGTATTGGTT+TGG | - | chr6.3:83779131-83779150 | None:intergenic | 35.0% |
| !!! | AGACATTTTTGAGATGTCCA+TGG | - | chr6.3:83779614-83779633 | None:intergenic | 35.0% |
| !!! | TTTTTTGTGTAGGTGGATGA+TGG | + | chr6.3:83778972-83778991 | MS.gene75060:intron | 35.0% |
| AAAAAGAAAATTGGGGAGGG+GGG | + | chr6.3:83779881-83779900 | MS.gene75060:intron | 40.0% | |
| AACAAAGACGGAACCACAAA+TGG | - | chr6.3:83780127-83780146 | None:intergenic | 40.0% | |
| AAGTAATGACCACCAGATTC+TGG | - | chr6.3:83778905-83778924 | None:intergenic | 40.0% | |
| ACAAAGACGGAACCACAAAT+GGG | - | chr6.3:83780126-83780145 | None:intergenic | 40.0% | |
| ACTACTTATCAACACGAGCA+AGG | - | chr6.3:83778863-83778882 | None:intergenic | 40.0% | |
| AGATGTCTTGACCATTTGTG+AGG | + | chr6.3:83780285-83780304 | MS.gene75060:CDS | 40.0% | |
| AGCATTATATCAACATCCCG+AGG | - | chr6.3:83780358-83780377 | None:intergenic | 40.0% | |
| ATGTCTTGACCATTTGTGAG+GGG | + | chr6.3:83780287-83780306 | MS.gene75060:CDS | 40.0% | |
| GATGTCTTGACCATTTGTGA+GGG | + | chr6.3:83780286-83780305 | MS.gene75060:CDS | 40.0% | |
| GGTCTGCTTTGTCAATAGTA+AGG | + | chr6.3:83779789-83779808 | MS.gene75060:intron | 40.0% | |
| GTTCATCTTTGTTCAGTCCA+TGG | + | chr6.3:83779594-83779613 | MS.gene75060:intron | 40.0% | |
| TTCAACAGTCTTCCCATTTG+TGG | + | chr6.3:83780111-83780130 | MS.gene75060:intron | 40.0% | |
| ! | AGTATATTACCTTTTGGCGG+AGG | + | chr6.3:83778628-83778647 | MS.gene75060:intron | 40.0% |
| ! | GTATATTACCTTTTGGCGGA+GGG | + | chr6.3:83778629-83778648 | MS.gene75060:intron | 40.0% |
| !! | AAATTGATGGGCTTCTCAAC+AGG | + | chr6.3:83779739-83779758 | MS.gene75060:CDS | 40.0% |
| !! | TATCATTTTAGTGGCGAGTG+TGG | + | chr6.3:83780151-83780170 | MS.gene75060:intron | 40.0% |
| AACGAACTGTCAGCTACTCA+AGG | + | chr6.3:83779420-83779439 | MS.gene75060:CDS | 45.0% | |
| AACTGTCAGCTACTCAAGGT+CGG | + | chr6.3:83779424-83779443 | MS.gene75060:intron | 45.0% | |
| AATTGTCTCCCCCTCACAAA+TGG | - | chr6.3:83780299-83780318 | None:intergenic | 45.0% | |
| ACTATTCTGTGCCAAAGCAG+GGG | + | chr6.3:83778389-83778408 | MS.gene75060:CDS | 45.0% | |
| AGTTCGTTGCGATCTGATTC+TGG | - | chr6.3:83779408-83779427 | None:intergenic | 45.0% | |
| CACATGATGTGTCAGCTCAA+TGG | - | chr6.3:83780002-83780021 | None:intergenic | 45.0% | |
| CACTATTCTGTGCCAAAGCA+GGG | + | chr6.3:83778388-83778407 | MS.gene75060:CDS | 45.0% | |
| CATCAAGAAGCAAGCCTTGA+TGG | + | chr6.3:83779360-83779379 | MS.gene75060:CDS | 45.0% | |
| CGAGCAGCAACAAGCTTAAA+AGG | - | chr6.3:83779661-83779680 | None:intergenic | 45.0% | |
| TCACTATTCTGTGCCAAAGC+AGG | + | chr6.3:83778387-83778406 | MS.gene75060:CDS | 45.0% | |
| TGCTCTTTGCACGTGACAAA+TGG | + | chr6.3:83778820-83778839 | MS.gene75060:CDS | 45.0% | |
| TGGTCAACTGTGTCAACAAG+AGG | - | chr6.3:83779388-83779407 | None:intergenic | 45.0% | |
| TGTCTTGACCATTTGTGAGG+GGG | + | chr6.3:83780288-83780307 | MS.gene75060:CDS | 45.0% | |
| TTGCATGTACCAGAATCTGG+TGG | + | chr6.3:83778893-83778912 | MS.gene75060:intron | 45.0% | |
| ! | AATTGTAGGGAGCATGACTG+TGG | + | chr6.3:83780315-83780334 | MS.gene75060:CDS | 45.0% |
| AGTGCTCTCATATGGCTGAC+AGG | + | chr6.3:83778525-83778544 | MS.gene75060:CDS | 50.0% | |
| CAAGATCGCGGAGTACACAT+TGG | + | chr6.3:83780239-83780258 | MS.gene75060:CDS | 50.0% | |
| CAATGTGTACTCCGCGATCT+TGG | - | chr6.3:83780241-83780260 | None:intergenic | 50.0% | |
| GTAGTTCTTGATGTCGGTGC+CGG | + | chr6.3:83778351-83778370 | MS.gene75060:CDS | 50.0% | |
| GTCAACAAGAGGCTCCATCA+AGG | - | chr6.3:83779377-83779396 | None:intergenic | 50.0% | |
| GTGAGGGGGAGACAATTGTA+GGG | + | chr6.3:83780302-83780321 | MS.gene75060:CDS | 50.0% | |
| GTGCTCTCATATGGCTGACA+GGG | + | chr6.3:83778526-83778545 | MS.gene75060:CDS | 50.0% | |
| TATTTGCAGGGCCAAGATCG+CGG | + | chr6.3:83780227-83780246 | MS.gene75060:intron | 50.0% | |
| TCATATGGCTGACAGGGCAA+AGG | + | chr6.3:83778532-83778551 | MS.gene75060:CDS | 50.0% | |
| TGTGAGGGGGAGACAATTGT+AGG | + | chr6.3:83780301-83780320 | MS.gene75060:CDS | 50.0% | |
| ! | GCAGGTAGAGTGCTCTCATA+TGG | + | chr6.3:83778517-83778536 | MS.gene75060:intron | 50.0% |
| ! | TAGTTCTTGATGTCGGTGCC+GGG | + | chr6.3:83778352-83778371 | MS.gene75060:CDS | 50.0% |
| CAGGCGATGCAATGCTTCGA+GGG | + | chr6.3:83780396-83780415 | MS.gene75060:CDS | 55.0% | |
| CGATCAATCCCTCCGCCAAA+AGG | - | chr6.3:83778640-83778659 | None:intergenic | 55.0% | |
| GCGGAGGGATTGATCGTGAA+AGG | + | chr6.3:83778644-83778663 | MS.gene75060:intron | 55.0% | |
| GACATGTGCTGCCCCTGCTT+TGG | - | chr6.3:83778403-83778422 | None:intergenic | 60.0% | |
| GCAGGCGATGCAATGCTTCG+AGG | + | chr6.3:83780395-83780414 | MS.gene75060:CDS | 60.0% | |
| !! | CTTGATGTCGGTGCCGGGAC+TGG | + | chr6.3:83778357-83778376 | MS.gene75060:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 83778276 | 83780441 | 83778276 | ID=MS.gene75060 |
| chr6.3 | mRNA | 83778276 | 83780441 | 83778276 | ID=MS.gene75060.t1;Parent=MS.gene75060 |
| chr6.3 | exon | 83778276 | 83778428 | 83778276 | ID=MS.gene75060.t1.exon1;Parent=MS.gene75060.t1 |
| chr6.3 | CDS | 83778276 | 83778428 | 83778276 | ID=cds.MS.gene75060.t1;Parent=MS.gene75060.t1 |
| chr6.3 | exon | 83778521 | 83778584 | 83778521 | ID=MS.gene75060.t1.exon2;Parent=MS.gene75060.t1 |
| chr6.3 | CDS | 83778521 | 83778584 | 83778521 | ID=cds.MS.gene75060.t1;Parent=MS.gene75060.t1 |
| chr6.3 | exon | 83778703 | 83778845 | 83778703 | ID=MS.gene75060.t1.exon3;Parent=MS.gene75060.t1 |
| chr6.3 | CDS | 83778703 | 83778845 | 83778703 | ID=cds.MS.gene75060.t1;Parent=MS.gene75060.t1 |
| chr6.3 | exon | 83778984 | 83779071 | 83778984 | ID=MS.gene75060.t1.exon4;Parent=MS.gene75060.t1 |
| chr6.3 | CDS | 83778984 | 83779071 | 83778984 | ID=cds.MS.gene75060.t1;Parent=MS.gene75060.t1 |
| chr6.3 | exon | 83779326 | 83779441 | 83779326 | ID=MS.gene75060.t1.exon5;Parent=MS.gene75060.t1 |
| chr6.3 | CDS | 83779326 | 83779441 | 83779326 | ID=cds.MS.gene75060.t1;Parent=MS.gene75060.t1 |
| chr6.3 | exon | 83779610 | 83779760 | 83779610 | ID=MS.gene75060.t1.exon6;Parent=MS.gene75060.t1 |
| chr6.3 | CDS | 83779610 | 83779760 | 83779610 | ID=cds.MS.gene75060.t1;Parent=MS.gene75060.t1 |
| chr6.3 | exon | 83780236 | 83780441 | 83780236 | ID=MS.gene75060.t1.exon7;Parent=MS.gene75060.t1 |
| chr6.3 | CDS | 83780236 | 83780441 | 83780236 | ID=cds.MS.gene75060.t1;Parent=MS.gene75060.t1 |
| Gene Sequence |
| Protein sequence |
