AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030293

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030293.t1 MTR_6g091770 99.219 384 0 2 1 382 1 383 0.0 787
MS.gene030293.t1 MTR_3g013960 38.462 312 154 9 64 340 256 564 2.62e-59 202
MS.gene030293.t1 MTR_1g113940 35.276 326 190 6 62 369 10 332 5.38e-55 184
MS.gene030293.t1 MTR_4g119900 35.294 306 185 7 52 346 130 433 4.34e-54 187
MS.gene030293.t1 MTR_4g119900 35.294 306 185 7 52 346 130 433 6.75e-54 186
MS.gene030293.t1 MTR_2g054880 33.046 348 200 10 64 379 26 372 3.45e-52 178
MS.gene030293.t1 MTR_2g436780 32.827 329 206 8 52 368 132 457 1.56e-51 180
MS.gene030293.t1 MTR_2g436780 32.827 329 206 8 52 368 132 457 1.61e-51 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030293.t1 AT4G29510 75.448 391 75 5 11 382 2 390 0.0 610
MS.gene030293.t1 AT2G19670 73.046 371 90 1 12 382 6 366 0.0 575
MS.gene030293.t1 AT3G20020 40.580 345 165 4 64 369 83 426 5.32e-83 260
MS.gene030293.t1 AT3G20020 40.643 342 163 4 64 366 83 423 4.46e-82 258
MS.gene030293.t1 AT3G20020 37.971 345 152 4 64 369 83 404 3.74e-71 229
MS.gene030293.t1 AT3G12270 36.290 372 201 11 1 344 181 544 1.26e-63 214
MS.gene030293.t1 AT5G49020 33.434 332 208 7 52 372 137 466 7.63e-53 184
MS.gene030293.t1 AT5G49020 33.434 332 208 7 52 372 139 468 8.42e-53 183
MS.gene030293.t1 AT1G04870 32.931 331 186 8 64 362 35 361 1.46e-52 179
MS.gene030293.t1 AT3G06930 32.927 328 207 7 52 368 136 461 2.01e-52 182
MS.gene030293.t1 AT3G06930 32.927 328 207 7 52 368 136 461 2.02e-52 182
MS.gene030293.t1 AT1G04870 29.008 262 150 8 133 362 1 258 1.87e-28 112

Find 64 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAAGAAGCAAGCCTTGA+TGG 0.279886 6.2:+88889529 MS.gene030293:CDS
GAAATGATTATATCAACTTT+AGG 0.289343 6.2:-88888949 None:intergenic
TCAGTTTGGAACAATGTATA+TGG 0.294266 6.2:+88889491 MS.gene030293:intron
AGATAGAGTGATGCAATATC+TGG 0.297140 6.2:-88889176 None:intergenic
CGAGCAGCAACAAGCTTAAA+AGG 0.335924 6.2:-88889826 None:intergenic
GAAACAAACAGTCCTATATC+TGG 0.356556 6.2:+88890465 MS.gene030293:CDS
TTTGTAATCTTTATCTTCAA+TGG 0.372756 6.2:-88889204 None:intergenic
GACATGTGCTGCCCCTGCTT+TGG 0.382365 6.2:-88888595 None:intergenic
CAATGTGTACTCCGCGATCT+TGG 0.388811 6.2:-88890442 None:intergenic
AGTTCGTTGCGATCTGATTC+TGG 0.393515 6.2:-88889574 None:intergenic
ATTATATCAACTTTAGGAAC+AGG 0.395657 6.2:-88888943 None:intergenic
CTTGATGTCGGTGCCGGGAC+TGG 0.401470 6.2:+88888552 MS.gene030293:CDS
GAAACTAATGGTTATTCTAA+AGG 0.402861 6.2:+88888762 MS.gene030293:CDS
CAACAATCACCTTCGATTTG+AGG 0.405593 6.2:+88886769 MS.gene030293:CDS
AAATTGATGGGCTTCTCAAC+AGG 0.411678 6.2:+88889907 MS.gene030293:CDS
AAAACGTTATTTATCAGAAT+AGG 0.416237 6.2:+88888505 MS.gene030293:CDS
TCAAGACATCTTCCAGATAT+AGG 0.420611 6.2:-88890477 None:intergenic
TACAAAGTGTCATAAATTGA+TGG 0.424292 6.2:+88889894 MS.gene030293:CDS
CACATTGCAGGAAATGTTGA+AGG 0.429613 6.2:+88888458 MS.gene030293:intron
TGCTCTTTGCACGTGACAAA+TGG 0.430259 6.2:+88889019 MS.gene030293:CDS
TCACTATTCTGTGCCAAAGC+AGG 0.443662 6.2:+88888582 MS.gene030293:CDS
GGTCACAACCACCCATTGAT+TGG 0.451883 6.2:-88886838 None:intergenic
ATCTAACCTCGACCAATCAA+TGG 0.460391 6.2:+88886826 MS.gene030293:CDS
TTTGATTCTTACTCTCACTT+TGG 0.465232 6.2:+88886899 MS.gene030293:CDS
GCAAGCCTTGATGGAGCCTC+TGG 0.466123 6.2:+88889538 MS.gene030293:CDS
ACAAAGTGTCATAAATTGAT+GGG 0.472701 6.2:+88889895 MS.gene030293:CDS
GCAGGTCGAGTGCTCTCATA+TGG 0.479543 6.2:+88888716 MS.gene030293:intron
TATAATCATTTCCGAATGGA+TGG 0.481760 6.2:+88888960 MS.gene030293:CDS
ATGCTCAAGTATTCATTGAA+TGG 0.485369 6.2:+88890577 MS.gene030293:CDS
GTAGTTCTTGATGTCGGTGC+CGG 0.486285 6.2:+88888546 MS.gene030293:CDS
AAGGAAATAGTTGAAACTAA+TGG 0.493872 6.2:+88888750 MS.gene030293:CDS
AGTGCTCTCATATGGCTGAC+AGG 0.495608 6.2:+88888724 MS.gene030293:CDS
CACTATTCTGTGCCAAAGCA+GGG 0.510201 6.2:+88888583 MS.gene030293:CDS
CAAGAAATATCCCATCCATT+CGG 0.524018 6.2:-88888971 None:intergenic
TAGTTCTTGATGTCGGTGCC+GGG 0.525835 6.2:+88888547 MS.gene030293:CDS
TCAAGTATTCATTGAATGGC+AGG 0.530106 6.2:+88890581 MS.gene030293:CDS
TCTAACCTCGACCAATCAAT+GGG 0.534105 6.2:+88886827 MS.gene030293:CDS
CAGGCGATGCAATGCTTCGA+GGG 0.549835 6.2:+88890600 MS.gene030293:CDS
TAGTGATAAAATTCCAGTCC+CGG 0.559941 6.2:-88888565 None:intergenic
GCAGGCGATGCAATGCTTCG+AGG 0.569433 6.2:+88890599 MS.gene030293:CDS
AACCACCCATTGATTGGTCG+AGG 0.570435 6.2:-88886832 None:intergenic
ATCAAAGTAGTAATCAGCGC+TGG 0.573071 6.2:-88886882 None:intergenic
GATAGAGTGATGCAATATCT+GGG 0.576462 6.2:-88889175 None:intergenic
TCATATGGCTGACAGGGCAA+AGG 0.579225 6.2:+88888731 MS.gene030293:CDS
TTGATATAATCATTTCCGAA+TGG 0.588889 6.2:+88888956 MS.gene030293:CDS
AATAAAGTAGTTCTTGATGT+CGG 0.594677 6.2:+88888540 MS.gene030293:CDS
TCAAACAAACAACACAAACA+TGG 0.596120 6.2:+88886733 MS.gene030293:CDS
GATGTCTTGACCATTTGTGA+GGG 0.596606 6.2:+88890490 MS.gene030293:CDS
GTCAACCAGAGGCTCCATCA+AGG 0.601626 6.2:-88889543 None:intergenic
ATAATCATTTCCGAATGGAT+GGG 0.608420 6.2:+88888961 MS.gene030293:CDS
CATCAGCATCCTCAAATCGA+AGG 0.616743 6.2:-88886778 None:intergenic
GTAATCTTTATCTTCAATGG+CGG 0.617207 6.2:-88889201 None:intergenic
AACGAACTGTCAGCTACTCA+AGG 0.617885 6.2:+88889589 MS.gene030293:CDS
GTGCTCTCATATGGCTGACA+GGG 0.621520 6.2:+88888725 MS.gene030293:CDS
TGTCTTGACCATTTGTGAGG+GGG 0.625821 6.2:+88890492 MS.gene030293:CDS
CAAGATCGCGGAGTACACAT+TGG 0.628631 6.2:+88890443 MS.gene030293:CDS
TGGTCAACTGTGTCAACCAG+AGG 0.637964 6.2:-88889554 None:intergenic
TATTTGCAGGGCCAAGATCG+CGG 0.646643 6.2:+88890431 MS.gene030293:intron
ATGTCTTGACCATTTGTGAG+GGG 0.652961 6.2:+88890491 MS.gene030293:CDS
AGATGTCTTGACCATTTGTG+AGG 0.654125 6.2:+88890489 MS.gene030293:CDS
AGCATTATATCAACATCCCG+AGG 0.654468 6.2:-88890559 None:intergenic
ACTATTCTGTGCCAAAGCAG+GGG 0.658809 6.2:+88888584 MS.gene030293:CDS
AACCTCGACCAATCAATGGG+TGG 0.673476 6.2:+88886830 MS.gene030293:CDS
AATTGTAGGGAGCATGACTG+TGG 0.688544 6.2:+88890519 MS.gene030293:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCTTAAAAAAAGAAAATT+GGG + chr6.2:88890048-88890067 MS.gene030293:intron 10.0%
!! TATTCTTAAAAAAAGAAAAT+TGG + chr6.2:88890047-88890066 MS.gene030293:intron 10.0%
!!! AAAAAAAATCATTTTTTTTG+GGG - chr6.2:88886959-88886978 None:intergenic 10.0%
!!! AAAATGATTTTTTTTTTATC+TGG + chr6.2:88886964-88886983 MS.gene030293:intron 10.0%
!!! AAATGATTTTTTTTTTATCT+GGG + chr6.2:88886965-88886984 MS.gene030293:intron 10.0%
!! AAAAATTAATGAAGATAGTA+AGG - chr6.2:88887345-88887364 None:intergenic 15.0%
!! AAACAAAACTAAAAATTTCA+AGG - chr6.2:88889402-88889421 None:intergenic 15.0%
!! AATTAACCTTTGTATTTAAA+TGG + chr6.2:88887907-88887926 MS.gene030293:intron 15.0%
!! TGTTAAATTAATAAACTTGA+TGG + chr6.2:88887011-88887030 MS.gene030293:intron 15.0%
!! TTCTTAAAAAAAGAAAATTG+GGG + chr6.2:88890049-88890068 MS.gene030293:intron 15.0%
!!! ATTCATTTTTATCATTTTAG+TGG + chr6.2:88890378-88890397 MS.gene030293:intron 15.0%
!! AAAACAAATTGACAACAATT+TGG + chr6.2:88887784-88887803 MS.gene030293:intron 20.0%
!! AAAACGTTATTTATCAGAAT+AGG + chr6.2:88888505-88888524 MS.gene030293:CDS 20.0%
!! AAATGGTATTATAACAAAGA+CGG - chr6.2:88890343-88890362 None:intergenic 20.0%
!! ATAAGTTATTTATCCAAACA+GGG - chr6.2:88887413-88887432 None:intergenic 20.0%
!! ATTATACATAAGCTCTTATA+CGG - chr6.2:88887450-88887469 None:intergenic 20.0%
!! GAAATGATTATATCAACTTT+AGG - chr6.2:88888952-88888971 None:intergenic 20.0%
!! TACGTAAAAATTAACAACAT+CGG - chr6.2:88887660-88887679 None:intergenic 20.0%
!! TATAAGTTATTTATCCAAAC+AGG - chr6.2:88887414-88887433 None:intergenic 20.0%
!! TTTGTAATCTTTATCTTCAA+TGG - chr6.2:88889207-88889226 None:intergenic 20.0%
!!! AATTTTAAAACTGTTCCAAA+TGG + chr6.2:88890109-88890128 MS.gene030293:intron 20.0%
!!! ATTAAATTGCTGTTTAGAAT+TGG + chr6.2:88887376-88887395 MS.gene030293:intron 20.0%
!!! ATTTTAAAACTGTTCCAAAT+GGG + chr6.2:88890110-88890129 MS.gene030293:intron 20.0%
!!! ATTTTCAGTATATTACCTTT+TGG + chr6.2:88888821-88888840 MS.gene030293:intron 20.0%
!!! CATGTATTTTTTCTGAAAAT+CGG + chr6.2:88890264-88890283 MS.gene030293:intron 20.0%
!!! CTTTTTTTTTCTTTTTGTGT+AGG + chr6.2:88889133-88889152 MS.gene030293:intron 20.0%
!!! GATGAAATTTTCTTTTCATT+TGG + chr6.2:88889691-88889710 MS.gene030293:intron 20.0%
!!! GTTAATAAAGTTTGAAATCA+TGG + chr6.2:88887282-88887301 MS.gene030293:intron 20.0%
!!! TAATTCGACAACAATTTTTT+TGG + chr6.2:88887260-88887279 MS.gene030293:intron 20.0%
!!! TTGTTATAATACCATTTTAG+TGG + chr6.2:88890346-88890365 MS.gene030293:intron 20.0%
!!! TTGTTTGATTGTTGTTTTTT+CGG - chr6.2:88886721-88886740 None:intergenic 20.0%
! AAATGGTACAAAAATTTGGT+TGG + chr6.2:88888018-88888037 MS.gene030293:intron 25.0%
! AACTGTAGAAAACAACATTA+TGG - chr6.2:88888884-88888903 None:intergenic 25.0%
! AAGGAAATAGTTGAAACTAA+TGG + chr6.2:88888750-88888769 MS.gene030293:CDS 25.0%
! AATAAAGTAGTTCTTGATGT+CGG + chr6.2:88888540-88888559 MS.gene030293:CDS 25.0%
! AATTGTACAGTTCAAAATCA+TGG + chr6.2:88887813-88887832 MS.gene030293:intron 25.0%
! CACAAAATGGTACAAAAATT+TGG + chr6.2:88888014-88888033 MS.gene030293:intron 25.0%
! GAAACTAATGGTTATTCTAA+AGG + chr6.2:88888762-88888781 MS.gene030293:CDS 25.0%
! TAAAAAAAGAAAATTGGGGA+GGG + chr6.2:88890053-88890072 MS.gene030293:intron 25.0%
! TAAAACCAATTCTTAACAAC+TGG - chr6.2:88888278-88888297 None:intergenic 25.0%
! TGTGTACATATATATTTGCA+GGG + chr6.2:88890419-88890438 MS.gene030293:intron 25.0%
! TTAAAAAAAGAAAATTGGGG+AGG + chr6.2:88890052-88890071 MS.gene030293:intron 25.0%
! TTATGCATGTTGTAAATACA+CGG + chr6.2:88888313-88888332 MS.gene030293:intron 25.0%
! TTGATATAATCATTTCCGAA+TGG + chr6.2:88888956-88888975 MS.gene030293:CDS 25.0%
! TTGTGTACATATATATTTGC+AGG + chr6.2:88890418-88890437 MS.gene030293:intron 25.0%
!! ACAAAGTGTCATAAATTGAT+GGG + chr6.2:88889895-88889914 MS.gene030293:CDS 25.0%
!! ATTATATCAACTTTAGGAAC+AGG - chr6.2:88888946-88888965 None:intergenic 25.0%
!! TACAAAGTGTCATAAATTGA+TGG + chr6.2:88889894-88889913 MS.gene030293:CDS 25.0%
!!! AATAACGTTTTGATATGTCT+TGG - chr6.2:88888496-88888515 None:intergenic 25.0%
!!! ACAGTTATAACAGTTTTGAA+AGG + chr6.2:88888898-88888917 MS.gene030293:intron 25.0%
!!! ATAAACTTGATGGCTAATTT+TGG + chr6.2:88887021-88887040 MS.gene030293:intron 25.0%
!!! CAGTTATAACAGTTTTGAAA+GGG + chr6.2:88888899-88888918 MS.gene030293:intron 25.0%
!!! TGTTTGTTTTTGTTTTTGCA+GGG + chr6.2:88887047-88887066 MS.gene030293:intron 25.0%
AAAAAAAGAAAATTGGGGAG+GGG + chr6.2:88890054-88890073 MS.gene030293:intron 30.0%
AAAATGATATTTGTGCCATC+AGG + chr6.2:88889427-88889446 MS.gene030293:intron 30.0%
AAAATTGACAGCAATTTGGA+TGG - chr6.2:88888164-88888183 None:intergenic 30.0%
ACTCAATCATATTTAGCAAG+AGG - chr6.2:88889258-88889277 None:intergenic 30.0%
ACTTCAGTTCTTTATCTTTG+TGG + chr6.2:88889943-88889962 MS.gene030293:intron 30.0%
AGAAAGTTAAATACACCTGA+TGG - chr6.2:88889445-88889464 None:intergenic 30.0%
AGCAAAAATTGACAGCAATT+TGG - chr6.2:88888168-88888187 None:intergenic 30.0%
ATAATCATTTCCGAATGGAT+GGG + chr6.2:88888961-88888980 MS.gene030293:CDS 30.0%
ATGCTCAAGTATTCATTGAA+TGG + chr6.2:88890577-88890596 MS.gene030293:CDS 30.0%
CAAATTGACAACAATTTGGT+TGG + chr6.2:88887788-88887807 MS.gene030293:intron 30.0%
GACATAATTCAAAACCCATT+TGG - chr6.2:88890127-88890146 None:intergenic 30.0%
GAGAAAAGAAATTTGCATGT+CGG - chr6.2:88889330-88889349 None:intergenic 30.0%
GATAAAGAACTGAAGTAGAA+AGG - chr6.2:88889939-88889958 None:intergenic 30.0%
GCTTATTTGAACTTATCTAC+TGG - chr6.2:88887624-88887643 None:intergenic 30.0%
GGGATTATTATCAATTAGTG+TGG + chr6.2:88890076-88890095 MS.gene030293:intron 30.0%
GTAATCTTTATCTTCAATGG+CGG - chr6.2:88889204-88889223 None:intergenic 30.0%
GTTAACGCAGTTTAAATATG+AGG - chr6.2:88888142-88888161 None:intergenic 30.0%
TACATTGTTCCAAACTGATA+TGG - chr6.2:88889489-88889508 None:intergenic 30.0%
TATAATCATTTCCGAATGGA+TGG + chr6.2:88888960-88888979 MS.gene030293:CDS 30.0%
TCAAACAAACAACACAAACA+TGG + chr6.2:88886733-88886752 MS.gene030293:CDS 30.0%
TCCATGATAGCTTATGAAAA+CGG - chr6.2:88887522-88887541 None:intergenic 30.0%
TGAACTTGAAACATAAGAAG+AGG - chr6.2:88887109-88887128 None:intergenic 30.0%
TGTATGAAACATACAATGCA+AGG - chr6.2:88889657-88889676 None:intergenic 30.0%
TTAACTGAACTGAAAAGAAC+TGG + chr6.2:88890218-88890237 MS.gene030293:intron 30.0%
TTCCAAACTGATATGGAAAA+TGG - chr6.2:88889482-88889501 None:intergenic 30.0%
TTGACGCCATTTAAATACAA+AGG - chr6.2:88887916-88887935 None:intergenic 30.0%
TTTGATTCTTACTCTCACTT+TGG + chr6.2:88886899-88886918 MS.gene030293:CDS 30.0%
TTTGGGAGGTAAATAAGTAT+TGG - chr6.2:88889307-88889326 None:intergenic 30.0%
! GTTTTCCAGTTGTTAAGAAT+TGG + chr6.2:88888270-88888289 MS.gene030293:intron 30.0%
! TCAGTTTGGAACAATGTATA+TGG + chr6.2:88889491-88889510 MS.gene030293:intron 30.0%
! TGTAAGTACATTGAAAGCAT+TGG + chr6.2:88887685-88887704 MS.gene030293:intron 30.0%
! TTCAGTATATTACCTTTTGG+TGG + chr6.2:88888824-88888843 MS.gene030293:intron 30.0%
! TTCCATTTTCCATATCAGTT+TGG + chr6.2:88889477-88889496 MS.gene030293:intron 30.0%
! TTTTGTCATTGGAATCATCA+AGG - chr6.2:88886862-88886881 None:intergenic 30.0%
!! GAGGTAAATAAGTATTGGTT+TGG - chr6.2:88889302-88889321 None:intergenic 30.0%
!!! CTGTTTGTTTTTGTTTTTGC+AGG + chr6.2:88887046-88887065 MS.gene030293:intron 30.0%
AAAAAAGAAAATTGGGGAGG+GGG + chr6.2:88890055-88890074 MS.gene030293:intron 35.0%
ACTACTTATCAACACGAGTA+AGG - chr6.2:88889062-88889081 None:intergenic 35.0%
AGATAGAGTGATGCAATATC+TGG - chr6.2:88889179-88889198 None:intergenic 35.0%
ATATTGCATGTACCAGAATC+TGG + chr6.2:88889089-88889108 MS.gene030293:intron 35.0%
ATTTCCTGCAATGTGAAAAC+AGG - chr6.2:88888453-88888472 None:intergenic 35.0%
CAAGAAATATCCCATCCATT+CGG - chr6.2:88888974-88888993 None:intergenic 35.0%
CAGCTTGTATAAACAGTTCT+AGG + chr6.2:88887171-88887190 MS.gene030293:intron 35.0%
CCCAAATAAAAAGAATCCTC+GGG + chr6.2:88890543-88890562 MS.gene030293:CDS 35.0%
CCCCAAATAAAAAGAATCCT+CGG + chr6.2:88890542-88890561 MS.gene030293:CDS 35.0%
GAAACAAACAGTCCTATATC+TGG + chr6.2:88890465-88890484 MS.gene030293:CDS 35.0%
GACATCTCAAAAATGTCTTC+AGG + chr6.2:88889784-88889803 MS.gene030293:CDS 35.0%
GATAGAGTGATGCAATATCT+GGG - chr6.2:88889178-88889197 None:intergenic 35.0%
TAGTGATAAAATTCCAGTCC+CGG - chr6.2:88888568-88888587 None:intergenic 35.0%
TCAAATAAGCCTATGCAAAC+AGG + chr6.2:88887634-88887653 MS.gene030293:intron 35.0%
TCAAGACATCTTCCAGATAT+AGG - chr6.2:88890480-88890499 None:intergenic 35.0%
TCAAGTATTCATTGAATGGC+AGG + chr6.2:88890581-88890600 MS.gene030293:CDS 35.0%
TGCGTGTGCACAATTTAAAA+TGG - chr6.2:88888699-88888718 None:intergenic 35.0%
! AAGAAATTTGCATGTCGGTT+TGG - chr6.2:88889325-88889344 None:intergenic 35.0%
! AGTATATTACCTTTTGGTGG+AGG + chr6.2:88888827-88888846 MS.gene030293:intron 35.0%
! ATTTTAAATTGTGCACACGC+AGG + chr6.2:88888698-88888717 MS.gene030293:intron 35.0%
! GCTGTGTTAATTTGACACAT+TGG + chr6.2:88887760-88887779 MS.gene030293:intron 35.0%
! GCTGTGTTATTGACACAAAA+TGG + chr6.2:88888001-88888020 MS.gene030293:intron 35.0%
! GTATATTACCTTTTGGTGGA+GGG + chr6.2:88888828-88888847 MS.gene030293:intron 35.0%
! TCCCGAGGATTCTTTTTATT+TGG - chr6.2:88890547-88890566 None:intergenic 35.0%
! TTTATTTCTCGTGATGCTCT+TGG + chr6.2:88888372-88888391 MS.gene030293:intron 35.0%
!! AGAAATTTGCATGTCGGTTT+GGG - chr6.2:88889324-88889343 None:intergenic 35.0%
!! CATAAAAGCATCATCAGAAC+TGG - chr6.2:88889625-88889644 None:intergenic 35.0%
!! CCCGAGGATTCTTTTTATTT+GGG - chr6.2:88890546-88890565 None:intergenic 35.0%
!! CCGAGGATTCTTTTTATTTG+GGG - chr6.2:88890545-88890564 None:intergenic 35.0%
!! TTGTGGTTTGCTTTGTCAAT+AGG + chr6.2:88889960-88889979 MS.gene030293:intron 35.0%
!!! AGACATTTTTGAGATGTCCA+TGG - chr6.2:88889782-88889801 None:intergenic 35.0%
AAAAAGAAAATTGGGGAGGG+GGG + chr6.2:88890056-88890075 MS.gene030293:intron 40.0%
AAAGCTGACAGCAATTTGGA+TGG - chr6.2:88887939-88887958 None:intergenic 40.0%
AACAAAGACGGAACCACAAA+TGG - chr6.2:88890331-88890350 None:intergenic 40.0%
ACAAAGACGGAACCACAAAT+GGG - chr6.2:88890330-88890349 None:intergenic 40.0%
AGATGTCTTGACCATTTGTG+AGG + chr6.2:88890489-88890508 MS.gene030293:CDS 40.0%
AGCATTATATCAACATCCCG+AGG - chr6.2:88890562-88890581 None:intergenic 40.0%
ATCAAAGTAGTAATCAGCGC+TGG - chr6.2:88886885-88886904 None:intergenic 40.0%
ATCTAACCTCGACCAATCAA+TGG + chr6.2:88886826-88886845 MS.gene030293:CDS 40.0%
ATGTCTTGACCATTTGTGAG+GGG + chr6.2:88890491-88890510 MS.gene030293:CDS 40.0%
CACATTGCAGGAAATGTTGA+AGG + chr6.2:88888458-88888477 MS.gene030293:intron 40.0%
CAGCTCTTTCAAAACATCAC+AGG - chr6.2:88887744-88887763 None:intergenic 40.0%
GACAAAAGCTGACAGCAATT+TGG - chr6.2:88887943-88887962 None:intergenic 40.0%
GATGTCTTGACCATTTGTGA+GGG + chr6.2:88890490-88890509 MS.gene030293:CDS 40.0%
GTTCATCTTTGTTCAGTCCA+TGG + chr6.2:88889762-88889781 MS.gene030293:intron 40.0%
TCTAACCTCGACCAATCAAT+GGG + chr6.2:88886827-88886846 MS.gene030293:CDS 40.0%
TTCAACAGTCTTCCCATTTG+TGG + chr6.2:88890315-88890334 MS.gene030293:intron 40.0%
TTCATGCTTGATGCTTGATC+TGG + chr6.2:88888405-88888424 MS.gene030293:intron 40.0%
! CAACAATCACCTTCGATTTG+AGG + chr6.2:88886769-88886788 MS.gene030293:CDS 40.0%
! CTAACCTGTTTTCACATTGC+AGG + chr6.2:88888446-88888465 MS.gene030293:intron 40.0%
! CTTTTTGTGTAGGTCGATGA+TGG + chr6.2:88889143-88889162 MS.gene030293:intron 40.0%
! GGTTTGCTTTGTCAATAGGA+AGG + chr6.2:88889964-88889983 MS.gene030293:intron 40.0%
! GGTTTTACAATGTCCCTGTT+TGG + chr6.2:88887397-88887416 MS.gene030293:intron 40.0%
!! AAATTGATGGGCTTCTCAAC+AGG + chr6.2:88889907-88889926 MS.gene030293:CDS 40.0%
!! GCCGTTTTCATAAGCTATCA+TGG + chr6.2:88887518-88887537 MS.gene030293:intron 40.0%
!! TATCATTTTAGTGGCGAGTG+TGG + chr6.2:88890387-88890406 MS.gene030293:intron 40.0%
AACGAACTGTCAGCTACTCA+AGG + chr6.2:88889589-88889608 MS.gene030293:CDS 45.0%
AAGTGATGACCACCAGATTC+TGG - chr6.2:88889104-88889123 None:intergenic 45.0%
AATTGTCTCCCCCTCACAAA+TGG - chr6.2:88890503-88890522 None:intergenic 45.0%
ACTATTCTGTGCCAAAGCAG+GGG + chr6.2:88888584-88888603 MS.gene030293:CDS 45.0%
AGTTCGTTGCGATCTGATTC+TGG - chr6.2:88889577-88889596 None:intergenic 45.0%
ATCCACACTCGCCACTAAAA+TGG - chr6.2:88890360-88890379 None:intergenic 45.0%
CACATGATGTGTCAGCTCAA+TGG - chr6.2:88890177-88890196 None:intergenic 45.0%
CACTATTCTGTGCCAAAGCA+GGG + chr6.2:88888583-88888602 MS.gene030293:CDS 45.0%
CATCAAGAAGCAAGCCTTGA+TGG + chr6.2:88889529-88889548 MS.gene030293:CDS 45.0%
CATCACAGGAAACAAACAGC+AGG - chr6.2:88887730-88887749 None:intergenic 45.0%
CATCAGCATCCTCAAATCGA+AGG - chr6.2:88886781-88886800 None:intergenic 45.0%
CGAGCAGCAACAAGCTTAAA+AGG - chr6.2:88889829-88889848 None:intergenic 45.0%
GCTTGATGCTTGATCTGGAA+GGG + chr6.2:88888410-88888429 MS.gene030293:intron 45.0%
TCACTATTCTGTGCCAAAGC+AGG + chr6.2:88888582-88888601 MS.gene030293:CDS 45.0%
TGCTCTTTGCACGTGACAAA+TGG + chr6.2:88889019-88889038 MS.gene030293:CDS 45.0%
TGCTTGATGCTTGATCTGGA+AGG + chr6.2:88888409-88888428 MS.gene030293:intron 45.0%
TGTCTTGACCATTTGTGAGG+GGG + chr6.2:88890492-88890511 MS.gene030293:CDS 45.0%
TTGCATGTACCAGAATCTGG+TGG + chr6.2:88889092-88889111 MS.gene030293:intron 45.0%
! AATTGTAGGGAGCATGACTG+TGG + chr6.2:88890519-88890538 MS.gene030293:CDS 45.0%
!! AATTTGCATGTCGGTTTGGG+AGG - chr6.2:88889321-88889340 None:intergenic 45.0%
!! TACCATTTTAGTGGCGAGTG+TGG + chr6.2:88890355-88890374 MS.gene030293:intron 45.0%
!!! ATCAGCGCTGGTTTTGTCAT+TGG - chr6.2:88886873-88886892 None:intergenic 45.0%
!!! AAAAAAAAAATCATTTTTTT+TGG - chr6.2:88886961-88886980 None:intergenic 5.0%
!!! AAAAAAAAATCATTTTTTTT+GGG - chr6.2:88886960-88886979 None:intergenic 5.0%
AACCTCGACCAATCAATGGG+TGG + chr6.2:88886830-88886849 MS.gene030293:CDS 50.0%
AGTGCTCTCATATGGCTGAC+AGG + chr6.2:88888724-88888743 MS.gene030293:CDS 50.0%
CAACATCGGCCTGTTTGCAT+AGG - chr6.2:88887646-88887665 None:intergenic 50.0%
CAAGATCGCGGAGTACACAT+TGG + chr6.2:88890443-88890462 MS.gene030293:CDS 50.0%
CAATGTGTACTCCGCGATCT+TGG - chr6.2:88890445-88890464 None:intergenic 50.0%
CGATCAATCCCTCCACCAAA+AGG - chr6.2:88888839-88888858 None:intergenic 50.0%
GGTCACAACCACCCATTGAT+TGG - chr6.2:88886841-88886860 None:intergenic 50.0%
GTAGTTCTTGATGTCGGTGC+CGG + chr6.2:88888546-88888565 MS.gene030293:CDS 50.0%
GTGAGGGGGAGACAATTGTA+GGG + chr6.2:88890506-88890525 MS.gene030293:CDS 50.0%
GTGCTCTCATATGGCTGACA+GGG + chr6.2:88888725-88888744 MS.gene030293:CDS 50.0%
GTGGAGGGATTGATCGTGAA+GGG + chr6.2:88888843-88888862 MS.gene030293:intron 50.0%
TATTTGCAGGGCCAAGATCG+CGG + chr6.2:88890431-88890450 MS.gene030293:intron 50.0%
TCATATGGCTGACAGGGCAA+AGG + chr6.2:88888731-88888750 MS.gene030293:CDS 50.0%
TGGTCAACTGTGTCAACCAG+AGG - chr6.2:88889557-88889576 None:intergenic 50.0%
TGTGAGGGGGAGACAATTGT+AGG + chr6.2:88890505-88890524 MS.gene030293:CDS 50.0%
! AACCACCCATTGATTGGTCG+AGG - chr6.2:88886835-88886854 None:intergenic 50.0%
! TAGTTCTTGATGTCGGTGCC+GGG + chr6.2:88888547-88888566 MS.gene030293:CDS 50.0%
!! GCTATCATGGAGAGCGCTTA+TGG + chr6.2:88887531-88887550 MS.gene030293:intron 50.0%
CAGGCGATGCAATGCTTCGA+GGG + chr6.2:88890600-88890619 MS.gene030293:CDS 55.0%
GCAGGTCGAGTGCTCTCATA+TGG + chr6.2:88888716-88888735 MS.gene030293:intron 55.0%
GGTGGAGGGATTGATCGTGA+AGG + chr6.2:88888842-88888861 MS.gene030293:intron 55.0%
GTCAACCAGAGGCTCCATCA+AGG - chr6.2:88889546-88889565 None:intergenic 55.0%
GACATGTGCTGCCCCTGCTT+TGG - chr6.2:88888598-88888617 None:intergenic 60.0%
GCAAGCCTTGATGGAGCCTC+TGG + chr6.2:88889538-88889557 MS.gene030293:CDS 60.0%
GCAGGCGATGCAATGCTTCG+AGG + chr6.2:88890599-88890618 MS.gene030293:CDS 60.0%
!! CTTGATGTCGGTGCCGGGAC+TGG + chr6.2:88888552-88888571 MS.gene030293:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 88886707 88890645 88886707 ID=MS.gene030293
chr6.2 mRNA 88886707 88890645 88886707 ID=MS.gene030293.t1;Parent=MS.gene030293
chr6.2 exon 88886707 88886920 88886707 ID=MS.gene030293.t1.exon1;Parent=MS.gene030293.t1
chr6.2 CDS 88886707 88886920 88886707 ID=cds.MS.gene030293.t1;Parent=MS.gene030293.t1
chr6.2 exon 88887068 88887078 88887068 ID=MS.gene030293.t1.exon2;Parent=MS.gene030293.t1
chr6.2 CDS 88887068 88887078 88887068 ID=cds.MS.gene030293.t1;Parent=MS.gene030293.t1
chr6.2 exon 88888468 88888623 88888468 ID=MS.gene030293.t1.exon3;Parent=MS.gene030293.t1
chr6.2 CDS 88888468 88888623 88888468 ID=cds.MS.gene030293.t1;Parent=MS.gene030293.t1
chr6.2 exon 88888720 88888783 88888720 ID=MS.gene030293.t1.exon4;Parent=MS.gene030293.t1
chr6.2 CDS 88888720 88888783 88888720 ID=cds.MS.gene030293.t1;Parent=MS.gene030293.t1
chr6.2 exon 88888902 88889044 88888902 ID=MS.gene030293.t1.exon5;Parent=MS.gene030293.t1
chr6.2 CDS 88888902 88889044 88888902 ID=cds.MS.gene030293.t1;Parent=MS.gene030293.t1
chr6.2 exon 88889155 88889242 88889155 ID=MS.gene030293.t1.exon6;Parent=MS.gene030293.t1
chr6.2 CDS 88889155 88889242 88889155 ID=cds.MS.gene030293.t1;Parent=MS.gene030293.t1
chr6.2 exon 88889495 88889610 88889495 ID=MS.gene030293.t1.exon7;Parent=MS.gene030293.t1
chr6.2 CDS 88889495 88889610 88889495 ID=cds.MS.gene030293.t1;Parent=MS.gene030293.t1
chr6.2 exon 88889778 88889928 88889778 ID=MS.gene030293.t1.exon8;Parent=MS.gene030293.t1
chr6.2 CDS 88889778 88889928 88889778 ID=cds.MS.gene030293.t1;Parent=MS.gene030293.t1
chr6.2 exon 88890440 88890645 88890440 ID=MS.gene030293.t1.exon9;Parent=MS.gene030293.t1
chr6.2 CDS 88890440 88890645 88890440 ID=cds.MS.gene030293.t1;Parent=MS.gene030293.t1
Gene Sequence

>MS.gene030293

ATGGGTAGTCGCCGAAAAAACAACAATCAAACAAACAACACAAACATGGACAACAACAACAACAACAATCACCTTCGATTTGAGGATGCTGATGAAGTAATTGAAGATGTTGCTGAAACATCTAACCTCGACCAATCAATGGGTGGTTGTGACCTTGATGATTCCAATGACAAAACCAGCGCTGATTACTACTTTGATTCTTACTCTCACTTTGGTAATTTTCATAAAGTTTCAATTTTTTTCATTTTTCCCCAAAAAAAATGATTTTTTTTTTATCTGGGTGTGTTTAATTAGTTTTATTTGTTGTTAAATTAATAAACTTGATGGCTAATTTTGGTTCTGTTTGTTTTTGTTTTTGCAGGGATTCATGAAGTAAGTGTCTGCTCAACTCAGATGCAACCTCTTCTTATGTTTCAAGTTCAATTTTTGTTGTTGTTTATGTTTTTGCTTCTGTCTTTGATTTGCAGCTTGTATAAACAGTTCTAGGATTAAAAAATAATAACAAATGTCAAATTTTGAAAGATGTATTAATTTGATGCAAAATTAAACGACTTAATTCGACAACAATTTTTTTGGTTAATAAAGTTTGAAATCATGGTTAATTATGCTTAGTTGATGATTAATGAGTTGTGACACCTTACTATCTTCATTAATTTTTCAATGTTTTGCATTAAATTGCTGTTTAGAATTGGTTTTACAATGTCCCTGTTTGGATAAATAACTTATAGCATATGTGCTTACCGTATAAGAGCTTATGTATAATCTATTTTTATGTTGAAAGTTAAAATAAATTCAAACTGTTTTCGTATAAGCCGTTTTCATAAGCTATCATGGAGAGCGCTTATGGAAATAAGTTGAAAAAAGCTCATAAGAATGTCATAAGCTGTTTTCAAATCTTTTCACAAGTGCTTATGCCAGTAGATAAGTTCAAATAAGCCTATGCAAACAGGCCGATGTTGTTAATTTTTACGTATGTTGTGTAAGTACATTGAAAGCATTGGCTGCATATGTGTATTGTATCCTGCTGTTTGTTTCCTGTGATGTTTTGAAAGAGCTGTGTTAATTTGACACATTGGTAAAACAAATTGACAACAATTTGGTTGGTTAATTGTACAGTTCAAAATCATGGTTAATTATGTTCTGTTGATGATTAATGAGTTTACACTTTGTATATTCATTGATCATCTACTGAAACTAATTAATTAACCTTTGTATTTAAATGGCGTCAACCATCCAAATTGCTGTCAGCTTTTGTCGTCAAATTTGTATGTCGAAATATCATTTATGTCTTTGAGCTGTGTTATTGACACAAAATGGTACAAAAATTTGGTTGGTTAATACAGTTCAAAATCATTGTTACTTATGTTCAATTGATGATTAATGAGTTGCGACATGTTGTTATATTCATTAATCATCTACTGAACTTAATTAACCTCATATTTAAACTGCGTTAACCATCCAAATTGCTGTCAATTTTTGCTATCAAACTTGTATACAAAATATCATTTATGTTTTCAAATGTTTTGTATTATATTATATTTTAAAAAACATTTATTATCTATTGTTTTCCAGTTGTTAAGAATTGGTTTTACTATGTTCTTAATTTTTATGCATGTTGTAAATACACGGAAAACATTCGCTGCATTTGTGTATCGTGTACTGCTTTTTATTTCTCGTGATGCTCTTGGATGTATTCTTTTCATGCTTGATGCTTGATCTGGAAGGGTGTGTTCTAAGTACTAACCTGTTTTCACATTGCAGGAAATGTTGAAGGACACTGTAAGAACCAAGACATATCAAAACGTTATTTATCAGAATAGGTTTTTATTCAAGAATAAAGTAGTTCTTGATGTCGGTGCCGGGACTGGAATTTTATCACTATTCTGTGCCAAAGCAGGGGCAGCACATGTCTATGCAGTGAGTTTCTGACTTTGCTTTTATCATTTTTGTGCTCTTAGTTAATCATCATGATGATCATTTTCAATTCAACCATTTTAAATTGTGCACACGCAGGTCGAGTGCTCTCATATGGCTGACAGGGCAAAGGAAATAGTTGAAACTAATGGTTATTCTAAAGGTAGTATCATTGATATATTTGTATTATTGTATATTTAATTTTCAGTATATTACCTTTTGGTGGAGGGATTGATCGTGAAGGGCACTAACTATAAATACCATAATGTTGTTTTCTACAGTTATAACAGTTTTGAAAGGGAAGATTGAAGAACTCGAACTTCCTGTTCCTAAAGTTGATATAATCATTTCCGAATGGATGGGATATTTCTTGTTGTTTGAGAATATGTTAAATTCTGTGCTCTTTGCACGTGACAAATGGCTTGTGAGTTACATTTTCCTTACTCGTGTTGATAAGTAGTTGATTATATATTGCATGTACCAGAATCTGGTGGTCATCACTTTGATACATTCTTTTTTTTTCTTTTTGTGTAGGTCGATGATGGAGTTATTCTCCCAGATATTGCATCACTCTATCTTACCGCCATTGAAGATAAAGATTACAAAGAAGATAAAATTGAGTGTGAGCTTTTGACCTCTTGCTAAATATGATTGAGTCTTTTATACATGAAAAGATGTCCAAACCAATACTTATTTACCTCCCAAACCGACATGCAAATTTCTTTTCTCATTCTGTATATAGAATTGAGAAATTGTGAATGACTGCTGTTGTTGAAAACCTTGAAATTTTTAGTTTTGTTTAAACAAAAATGATATTTGTGCCATCAGGTGTATTTAACTTTCTTGTTAATTATATTTCCATTTTCCATATCAGTTTGGAACAATGTATATGGATTTGACATGAGCTGCATCAAGAAGCAAGCCTTGATGGAGCCTCTGGTTGACACAGTTGACCAGAATCAGATCGCAACGAACTGTCAGCTACTCAAGGTCAGTAATATCCAGTTCTGATGATGCTTTTATGTTTAATGTACCTTGCATTGTATGTTTCATACAACAATGTCTACAATGATGAAATTTTCTTTTCATTTGGTGCAATAGTTTCTTGTTTGAATGCAAAGATTTGTATTTGTGCTGACTTGTTCATCTTTGTTCAGTCCATGGACATCTCAAAAATGTCTTCAGGAGACTGTTCATTCACAGCACCTTTTAAGCTTGTTGCTGCTCGTGACGATTTCATTCATGCTTTTGTTGCATATTTTGATGTATCATTTACAAAGTGTCATAAATTGATGGGCTTCTCAACAGGTTAGTTCCTTTCTACTTCAGTTCTTTATCTTTGTGGTTTGCTTTGTCAATAGGAAGGATGAACATTGAAGTCTGTTTATTGATTCTTTCTAATAATTTGCATGTAGAAGTACGATCATATTCTTAAAAAAAGAAAATTGGGGAGGGGGGATTATTATCAATTAGTGTGGCACTAATGACAATTTTAAAACTGTTCCAAATGGGTTTTGAATTATGTCACTTGATGTTATAAAGTCAAACTCGTACCATTGAGCTGACACATCATGTGCAAATATGATGATATTTGCTTTTAACTGAACTGAAAAGAACTGGTATTGCTTCTGAAACTATGTTTGCATGTATTTTTTCTGAAAATCGGTTGCTGAAAACTTGTACACAAGAGTTCTTTCAACAGTCTTCCCATTTGTGGTTCCGTCTTTGTTATAATACCATTTTAGTGGCGAGTGTGGATTCATTTTTATCATTTTAGTGGCGAGTGTGGATTCATTTTTGTGTACATATATATTTGCAGGGCCAAGATCGCGGAGTACACATTGGAAACAAACAGTCCTATATCTGGAAGATGTCTTGACCATTTGTGAGGGGGAGACAATTGTAGGGAGCATGACTGTGGCCCCAAATAAAAAGAATCCTCGGGATGTTGATATAATGCTCAAGTATTCATTGAATGGCAGGCGATGCAATGCTTCGAGGGTTCAGTATTACAAGATGCGTTGA
Protein sequence

>MS.gene030293.t1

MGSRRKNNNQTNNTNMDNNNNNNHLRFEDADEVIEDVAETSNLDQSMGGCDLDDSNDKTSADYYFDSYSHFGIHEEMLKDTVRTKTYQNVIYQNRFLFKNKVVLDVGAGTGILSLFCAKAGAAHVYAVECSHMADRAKEIVETNGYSKVITVLKGKIEELELPVPKVDIIISEWMGYFLLFENMLNSVLFARDKWLVDDGVILPDIASLYLTAIEDKDYKEDKIEFWNNVYGFDMSCIKKQALMEPLVDTVDQNQIATNCQLLKSMDISKMSSGDCSFTAPFKLVAARDDFIHAFVAYFDVSFTKCHKLMGFSTGPRSRSTHWKQTVLYLEDVLTICEGETIVGSMTVAPNKKNPRDVDIMLKYSLNGRRCNASRVQYYKMR