AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83443


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83443.t1 MTR_5g025960 97.744 532 11 1 1 532 28 558 0.0 1070
MS.gene83443.t1 MTR_7g065220 46.354 384 195 2 75 447 168 551 2.11e-113 350
MS.gene83443.t1 MTR_4g075640 47.383 363 183 3 90 444 86 448 1.32e-112 345
MS.gene83443.t1 MTR_3g069590 45.596 386 199 4 87 461 96 481 4.43e-111 343
MS.gene83443.t1 MTR_5g081410 45.812 382 196 3 93 463 84 465 2.08e-110 340
MS.gene83443.t1 MTR_4g019770 46.832 363 187 2 91 447 96 458 2.45e-107 331
MS.gene83443.t1 MTR_2g101830 46.348 356 180 5 91 444 86 432 1.76e-104 323
MS.gene83443.t1 MTR_8g030850 44.267 375 184 4 90 444 96 465 1.16e-101 314
MS.gene83443.t1 MTR_6g087700 45.730 363 185 6 95 455 100 452 2.26e-101 316
MS.gene83443.t1 MTR_3g069590 45.536 336 173 3 87 412 96 431 1.79e-97 302
MS.gene83443.t1 MTR_7g077690 39.089 417 186 5 91 444 113 524 2.26e-87 279
MS.gene83443.t1 MTR_4g013165 43.182 308 156 6 142 444 1 294 2.75e-80 256
MS.gene83443.t1 MTR_5g026140 84.314 51 8 0 129 179 9 59 1.38e-24 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83443.t1 AT1G31650 61.835 545 178 8 1 520 2 541 0.0 623
MS.gene83443.t1 AT1G31650 61.835 545 178 8 1 520 30 569 0.0 622
MS.gene83443.t1 AT4G38430 48.077 364 180 3 90 444 89 452 1.51e-113 347
MS.gene83443.t1 AT5G05940 45.128 390 199 3 87 461 98 487 1.94e-111 344
MS.gene83443.t1 AT5G02010 46.631 371 187 3 90 451 69 437 1.76e-110 340
MS.gene83443.t1 AT4G00460 42.117 444 211 9 23 444 47 466 2.70e-105 324
MS.gene83443.t1 AT4G00460 42.117 444 211 9 23 444 47 466 2.70e-105 324
MS.gene83443.t1 AT3G24620 43.716 366 196 3 88 452 82 438 3.47e-102 317
MS.gene83443.t1 AT1G79860 45.658 357 181 6 90 444 91 436 4.56e-102 317
MS.gene83443.t1 AT4G13240 45.429 361 187 4 88 447 71 422 1.75e-101 315
MS.gene83443.t1 AT1G01700 44.186 387 192 5 72 444 102 478 1.86e-100 311
MS.gene83443.t1 AT3G16130 42.119 387 210 5 70 453 71 446 3.77e-97 305
MS.gene83443.t1 AT5G05940 44.152 342 179 2 87 416 98 439 5.14e-97 303
MS.gene83443.t1 AT1G52240 43.923 362 190 5 87 447 100 449 1.27e-95 301
MS.gene83443.t1 AT1G01700 38.511 470 221 8 27 444 55 508 7.65e-94 295
MS.gene83443.t1 AT3G55660 42.975 363 198 4 88 441 104 466 9.78e-93 295
MS.gene83443.t1 AT5G19560 44.044 361 192 4 88 446 41 393 4.80e-90 285
MS.gene83443.t1 AT5G19560 44.044 361 192 4 88 446 41 393 4.80e-90 285
MS.gene83443.t1 AT5G19560 44.044 361 192 4 88 446 60 412 8.54e-90 285
MS.gene83443.t1 AT2G45890 41.711 374 193 5 88 444 90 455 1.24e-87 278
MS.gene83443.t1 AT1G01700 42.857 364 177 7 72 414 102 455 3.21e-85 271
MS.gene83443.t1 AT4G00460 42.814 334 166 5 128 444 8 333 4.71e-83 262
MS.gene83443.t1 AT3G55660 41.317 334 187 4 88 412 104 437 1.83e-81 261
MS.gene83443.t1 AT5G19560 42.508 327 178 4 88 412 60 378 4.67e-76 245
MS.gene83443.t1 AT4G00460 43.599 289 132 5 23 296 47 319 5.37e-68 223
MS.gene83443.t1 AT1G01700 42.361 288 137 4 27 296 55 331 5.47e-65 216
MS.gene83443.t1 AT1G01700 42.361 288 137 4 27 296 55 331 5.47e-65 216
MS.gene83443.t1 AT5G19560 40.449 267 149 4 182 446 5 263 8.93e-52 181

Find 104 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAGCTTCCAATTTATTAA+TGG 0.226323 5.4:+17032432 None:intergenic
CCTTGAGACCATTAATAAAT+TGG 0.239944 5.4:-17032440 MS.gene83443:CDS
TGATAAACTTGAGTTATTAT+TGG 0.246352 5.4:-17032314 MS.gene83443:CDS
TTGACAGCTGAATCAACTTC+TGG 0.292107 5.4:-17032508 MS.gene83443:CDS
TCAGGAATTATGACATATAA+TGG 0.295381 5.4:-17034476 None:intergenic
TTGTTATCTCTGTAGGATAT+TGG 0.303057 5.4:-17031977 MS.gene83443:intron
GAAGCGTATTCCAGAGTTCT+TGG 0.321753 5.4:-17031941 MS.gene83443:CDS
AAGAAAGAGGTTGGTTCATC+AGG 0.325300 5.4:-17032951 MS.gene83443:CDS
AAGAAATGTTTGAGGAAGAT+TGG 0.333774 5.4:+17032249 None:intergenic
ATTTGGCAGCCTTGAATACT+TGG 0.340330 5.4:+17032915 None:intergenic
CTCTTTCTTTCTTCAGATAG+AGG 0.341999 5.4:+17033563 None:intergenic
TCAGAGATATTATTTATTCC+AGG 0.347750 5.4:+17031833 None:intergenic
TTACTTGGTGAAGATGTTAC+TGG 0.361690 5.4:-17034161 MS.gene83443:CDS
CAATGGTGAAAACAGAGTTT+TGG 0.364768 5.4:-17033084 MS.gene83443:CDS
GAGCAAATGGCGAAGAGAAA+TGG 0.382512 5.4:-17033543 MS.gene83443:CDS
GTGTAGCTATTATCACATCT+TGG 0.389486 5.4:+17031693 None:intergenic
GGATATTGGACATTCCATTC+TGG 0.394307 5.4:-17031963 MS.gene83443:CDS
TCTTCAAGCAAAGATGCGTT+TGG 0.398072 5.4:-17034347 MS.gene83443:CDS
CAAAGTGTTTAACAATGAAA+AGG 0.400663 5.4:-17034313 MS.gene83443:CDS
GATGCTGCTAAAGTTCAATA+TGG 0.402749 5.4:-17032226 MS.gene83443:CDS
TAAGCATAGAGTCCAACTTC+TGG 0.406157 5.4:+17033303 None:intergenic
CACACTCATGTCTTTCCCTT+CGG 0.412875 5.4:+17033039 None:intergenic
TGTAGCTATTATCACATCTT+GGG 0.415683 5.4:+17031694 None:intergenic
TGTTTAGAATGCAACTTTCA+AGG 0.431869 5.4:+17034453 None:intergenic
TGAATGTCTGCACGAGCTTT+AGG 0.436123 5.4:+17033344 None:intergenic
TAGCTTCAATATCTGAATGT+TGG 0.436489 5.4:+17034207 None:intergenic
AATCACCGGTTCGAACTTCA+TGG 0.438603 5.4:-17032366 MS.gene83443:CDS
AGAAATGTTTGAGGAAGATT+GGG 0.439291 5.4:+17032250 None:intergenic
AGAACTATGGAACAAGTTAC+TGG 0.440000 5.4:-17032391 MS.gene83443:CDS
ACTGTCTCCTACAAACTATA+TGG 0.440626 5.4:-17033513 MS.gene83443:CDS
ATGAACAAGGACTTGAAGAA+TGG 0.447540 5.4:-17034286 MS.gene83443:CDS
AGTTTATCAGCTTCTGACAT+AGG 0.450031 5.4:+17032328 None:intergenic
AGCTCAACCATATAGTTTGT+AGG 0.458810 5.4:+17033506 None:intergenic
AGATGTTACTGGAGGAACTA+AGG 0.464313 5.4:-17034150 MS.gene83443:CDS
CTGAAGAAAGAAAGAGCAAA+TGG 0.467672 5.4:-17033556 MS.gene83443:CDS
GGTCTCAAGGGCCATATGTT+CGG 0.469228 5.4:+17032453 None:intergenic
TTCAGATATTGAAGCTATGA+AGG 0.469502 5.4:-17034201 MS.gene83443:CDS
AAAGTGTTTAACAATGAAAA+GGG 0.471202 5.4:-17034312 MS.gene83443:CDS
TAAGGGCATCACTACAGCTT+TGG 0.471817 5.4:-17034132 MS.gene83443:CDS
AACTCACTAAGTTGCTCCCC+TGG 0.474068 5.4:-17031851 MS.gene83443:CDS
CAATTTGAAATCCGAACATA+TGG 0.474139 5.4:-17032464 MS.gene83443:CDS
AATGCCATCACAAACTTGTC+AGG 0.477719 5.4:-17034101 MS.gene83443:intron
GAGTCCAACTTCTGGAGTGC+TGG 0.477913 5.4:+17033311 None:intergenic
TGAACAAGGACTTGAAGAAT+GGG 0.481493 5.4:-17034285 MS.gene83443:CDS
TCTTCCAGCACTCCAGAAGT+TGG 0.489929 5.4:-17033315 MS.gene83443:CDS
GGCTAAATTTCCAAGAACTC+TGG 0.491194 5.4:+17031931 None:intergenic
GGTGGTACGCCAAGTATTCA+AGG 0.491614 5.4:-17032924 MS.gene83443:CDS
CCAATTTATTAATGGTCTCA+AGG 0.492231 5.4:+17032440 None:intergenic
AGCAGAACAAGTAGAGGAGA+CGG 0.494848 5.4:-17034410 MS.gene83443:CDS
TAAATAATATCTCTGAAACT+TGG 0.499561 5.4:-17031826 MS.gene83443:CDS
GTTTATCAGCTTCTGACATA+GGG 0.501172 5.4:+17032329 None:intergenic
TGCCAATGGTAGAATCTTTG+AGG 0.504782 5.4:-17033462 MS.gene83443:intron
GAGGGAGGAAGCAGGACCGA+AGG 0.507585 5.4:-17033055 MS.gene83443:CDS
ACAGGATGCACTTGATTCAA+TGG 0.509215 5.4:-17033101 MS.gene83443:intron
CCTTGTGCAGTTCTTGTCCA+AGG 0.510155 5.4:+17032533 None:intergenic
GCAGCATCAAGAAATGTTTG+AGG 0.512844 5.4:+17032241 None:intergenic
CAATTTATTAATGGTCTCAA+GGG 0.515889 5.4:+17032441 None:intergenic
CAGAGATATTATTTATTCCA+GGG 0.516460 5.4:+17031834 None:intergenic
ATCATCGTCATCAAATGAAT+CGG 0.519579 5.4:+17034379 None:intergenic
CTCGTTGAAAGAGAGAACTA+TGG 0.524461 5.4:-17032404 MS.gene83443:CDS
CACCAAGCAGGAGTAGTGTC+TGG 0.526331 5.4:-17031673 MS.gene83443:CDS
TGATACCGCAAGAAAGAGGT+TGG 0.530544 5.4:-17032960 MS.gene83443:CDS
TACCTCAAAGATTCTACCAT+TGG 0.531632 5.4:+17033460 None:intergenic
TTCAGCATATTGTCTAGAAT+AGG 0.545508 5.4:-17031908 MS.gene83443:CDS
CACCAGACACTACTCCTGCT+TGG 0.546870 5.4:+17031671 None:intergenic
AAAGACCATGAAGTTCGAAC+CGG 0.547808 5.4:+17032361 None:intergenic
TCTGGAATACGCTTCCAGAA+TGG 0.548749 5.4:+17031949 None:intergenic
TAATATCTCTGAAACTTGGA+TGG 0.549387 5.4:-17031822 MS.gene83443:CDS
GAATGTTGGATTGCATAAGA+AGG 0.550363 5.4:+17034221 None:intergenic
AAACAATCAGTCTTATGAAG+AGG 0.554003 5.4:-17034435 MS.gene83443:CDS
TTCTATGTTGCAGTCTGGAA+AGG 0.559632 5.4:-17032560 MS.gene83443:intron
AGAGATATTATTTATTCCAG+GGG 0.565546 5.4:+17031835 None:intergenic
TATTAGAGATGCACTTGCAA+AGG 0.565718 5.4:-17032849 MS.gene83443:intron
AGTGCATCTCTAATAACTGT+TGG 0.565972 5.4:+17032857 None:intergenic
GATGTTACTGGAGGAACTAA+GGG 0.566443 5.4:-17034149 MS.gene83443:CDS
AGAAAGAGGTTGGTTCATCA+GGG 0.566470 5.4:-17032950 MS.gene83443:CDS
AGGGAGGAAGCAGGACCGAA+GGG 0.567526 5.4:-17033054 MS.gene83443:CDS
TTTCTGATACCGCAAGAAAG+AGG 0.568553 5.4:-17032964 MS.gene83443:CDS
TGATAATAGCTACACCAAGC+AGG 0.570801 5.4:-17031685 MS.gene83443:CDS
CAAAAGATGAACAAAGCAGA+TGG 0.584707 5.4:-17031770 MS.gene83443:CDS
GGTATGGTGAGGGAGGAAGC+AGG 0.588600 5.4:-17033063 MS.gene83443:CDS
CAGTCTGGAAAGGCAAACCT+TGG 0.594632 5.4:-17032550 MS.gene83443:CDS
ACAAGTTACTGGCAAATCAC+CGG 0.594634 5.4:-17032380 MS.gene83443:CDS
GAGGAAAGCAGAACAAGTAG+AGG 0.594944 5.4:-17034416 MS.gene83443:CDS
TGCTAAAGTTCAATATGGCA+AGG 0.601273 5.4:-17032221 MS.gene83443:intron
TCTCTAATAACTGTTGGCAC+AGG 0.604103 5.4:+17032863 None:intergenic
AATAGGAGATATATTACAAG+AGG 0.605594 5.4:-17031891 MS.gene83443:CDS
TATTCTAGACAATATGCTGA+AGG 0.609235 5.4:+17031910 None:intergenic
GAGGTTGGTTCATCAGGGAA+AGG 0.610824 5.4:-17032945 MS.gene83443:CDS
TATCTCTGAAACTTGGATGG+TGG 0.612314 5.4:-17031819 MS.gene83443:CDS
ATGAACCAACCTCTTTCTTG+CGG 0.616377 5.4:+17032955 None:intergenic
CCTTGGACAAGAACTGCACA+AGG 0.620947 5.4:-17032533 MS.gene83443:CDS
AATGGCGAAGAGAAATGGAC+TGG 0.621786 5.4:-17033538 MS.gene83443:CDS
GCTAAGCAAAACAATGCCAA+TGG 0.628095 5.4:-17033476 MS.gene83443:CDS
GTTGGTTCATCAGGGAAAGG+TGG 0.638880 5.4:-17032942 MS.gene83443:CDS
CATACCTGACAAGTTTGTGA+TGG 0.644339 5.4:+17034097 None:intergenic
TGTCTGGTGCATTAGTAGAG+AGG 0.658828 5.4:-17031657 MS.gene83443:CDS
CTTGGTGAAGATGTTACTGG+AGG 0.664082 5.4:-17034158 MS.gene83443:CDS
AGAACAAGTAGAGGAGACGG+AGG 0.669728 5.4:-17034407 MS.gene83443:CDS
ATGAAAAGGGAAGATGAACA+AGG 0.671938 5.4:-17034299 MS.gene83443:CDS
GTGTGCGGCATAGTAAAAGA+TGG 0.678764 5.4:-17033021 MS.gene83443:CDS
TGCGGCATAGTAAAAGATGG+TGG 0.684737 5.4:-17033018 MS.gene83443:CDS
AAGGGAAAGACATGAGTGTG+CGG 0.684788 5.4:-17033036 MS.gene83443:CDS
GCTGTAAAAGTGTTTCAGCA+CGG 0.690145 5.4:+17032290 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCATTTCTATTTTTCTTT+CGG - chr5.4:17032426-17032445 MS.gene83443:CDS 15.0%
!! AATCACATATTAAGTGTATA+CGG + chr5.4:17033329-17033348 None:intergenic 20.0%
!! TATACACTTAATATGTGATT+TGG - chr5.4:17033329-17033348 MS.gene83443:CDS 20.0%
!! TGATAAACTTGAGTTATTAT+TGG - chr5.4:17033775-17033794 MS.gene83443:intron 20.0%
!!! AAAGTGTTTAACAATGAAAA+GGG - chr5.4:17031777-17031796 MS.gene83443:CDS 20.0%
!!! AAATAAGAAAGTTTTGTTCT+TGG - chr5.4:17032708-17032727 MS.gene83443:intron 20.0%
!!! AAATTAACATGATTCGTTTT+AGG - chr5.4:17032169-17032188 MS.gene83443:intron 20.0%
!!! AAATTTAGCTATTCTAAGAA+AGG - chr5.4:17032863-17032882 MS.gene83443:CDS 20.0%
!!! AATCATGTTAATTTTAGACT+AGG + chr5.4:17032163-17032182 None:intergenic 20.0%
!!! ATAGTTTACTTTTTCTTAAC+TGG + chr5.4:17032667-17032686 None:intergenic 20.0%
!!! TAAATAATATCTCTGAAACT+TGG - chr5.4:17034263-17034282 MS.gene83443:CDS 20.0%
!!! TGACACTTTAAAAAAGATAA+AGG - chr5.4:17032357-17032376 MS.gene83443:CDS 20.0%
! AACAGCTTCCAATTTATTAA+TGG + chr5.4:17033660-17033679 None:intergenic 25.0%
! AATAAATTCTAATGCATCGA+AGG - chr5.4:17033296-17033315 MS.gene83443:intron 25.0%
! AATAGGAGATATATTACAAG+AGG - chr5.4:17034198-17034217 MS.gene83443:CDS 25.0%
! AGAGATATTATTTATTCCAG+GGG + chr5.4:17034257-17034276 None:intergenic 25.0%
! ATCTTTACTAGCAACATATT+AGG - chr5.4:17032929-17032948 MS.gene83443:CDS 25.0%
! ATGAACGTTGAATTATACTA+TGG + chr5.4:17032261-17032280 None:intergenic 25.0%
! CAATTTATTAATGGTCTCAA+GGG + chr5.4:17033651-17033670 None:intergenic 25.0%
! CAGAGATATTATTTATTCCA+GGG + chr5.4:17034258-17034277 None:intergenic 25.0%
! GATCATATAAGTACATAGAT+TGG + chr5.4:17032466-17032485 None:intergenic 25.0%
! TAAGCTCTTGACTATTTAAA+AGG - chr5.4:17032075-17032094 MS.gene83443:intron 25.0%
! TCAGAGATATTATTTATTCC+AGG + chr5.4:17034259-17034278 None:intergenic 25.0%
! TGACTATTTGATTATAACCT+AGG - chr5.4:17033419-17033438 MS.gene83443:intron 25.0%
! TTTAAAAACGTCAACATTGT+TGG - chr5.4:17032041-17032060 MS.gene83443:intron 25.0%
!! AAATTTTCAAAGCTCTTACT+TGG - chr5.4:17031913-17031932 MS.gene83443:CDS 25.0%
!! ACTTTCTTATTTAGTAGCAA+AGG + chr5.4:17032700-17032719 None:intergenic 25.0%
!! CAAAGTGTTTAACAATGAAA+AGG - chr5.4:17031776-17031795 MS.gene83443:CDS 25.0%
!! CACATTTTCATTGATAGATT+TGG + chr5.4:17033194-17033213 None:intergenic 25.0%
!! CTTTCTTATTTAGTAGCAAA+GGG + chr5.4:17032699-17032718 None:intergenic 25.0%
!! TATTTGGATTATTTGTTGAC+AGG - chr5.4:17032970-17032989 MS.gene83443:CDS 25.0%
!! TTGGTTTCTTTAGTTTAGAA+AGG + chr5.4:17033963-17033982 None:intergenic 25.0%
!!! AAATTGGTTTGATTAACTGT+TGG + chr5.4:17034034-17034053 None:intergenic 25.0%
!!! TTAATATGTGATTTGGTTCT+TGG - chr5.4:17033336-17033355 MS.gene83443:CDS 25.0%
!!! TTTGTTCATCTTTTGAAGTA+AGG + chr5.4:17034314-17034333 None:intergenic 25.0%
AAGAAATGTTTGAGGAAGAT+TGG + chr5.4:17033843-17033862 None:intergenic 30.0%
AGAAATGTTTGAGGAAGATT+GGG + chr5.4:17033842-17033861 None:intergenic 30.0%
AGTCAAGAGCTTAGAAAATT+CGG + chr5.4:17032068-17032087 None:intergenic 30.0%
ATCATCGTCATCAAATGAAT+CGG + chr5.4:17031713-17031732 None:intergenic 30.0%
CCAATTTATTAATGGTCTCA+AGG + chr5.4:17033652-17033671 None:intergenic 30.0%
CCTTGAGACCATTAATAAAT+TGG - chr5.4:17033649-17033668 MS.gene83443:intron 30.0%
TAAAGCAAATCACAATCACA+GGG - chr5.4:17033455-17033474 MS.gene83443:intron 30.0%
TAGCTTCAATATCTGAATGT+TGG + chr5.4:17031885-17031904 None:intergenic 30.0%
TATTCTAGACAATATGCTGA+AGG + chr5.4:17034182-17034201 None:intergenic 30.0%
TCTTTGACGTAAAAATGTTG+AGG + chr5.4:17031844-17031863 None:intergenic 30.0%
TGTAGAAAACAAATGACAGA+AGG + chr5.4:17032889-17032908 None:intergenic 30.0%
TGTAGCTATTATCACATCTT+GGG + chr5.4:17034398-17034417 None:intergenic 30.0%
TTAAAGCAAATCACAATCAC+AGG - chr5.4:17033454-17033473 MS.gene83443:intron 30.0%
TTCAGATATTGAAGCTATGA+AGG - chr5.4:17031888-17031907 MS.gene83443:CDS 30.0%
TTGTTATCTCTGTAGGATAT+TGG - chr5.4:17034112-17034131 MS.gene83443:CDS 30.0%
TTTAAGCAATAACAAGTCCT+AGG + chr5.4:17033439-17033458 None:intergenic 30.0%
! AAACAATCAGTCTTATGAAG+AGG - chr5.4:17031654-17031673 MS.gene83443:CDS 30.0%
! CAATTTGAAATCCGAACATA+TGG - chr5.4:17033625-17033644 MS.gene83443:intron 30.0%
! TCATACACAGTTACTGTTTT+TGG - chr5.4:17032484-17032503 MS.gene83443:CDS 30.0%
! TGTTTAGAATGCAACTTTCA+AGG + chr5.4:17031639-17031658 None:intergenic 30.0%
! TTCAGCATATTGTCTAGAAT+AGG - chr5.4:17034181-17034200 MS.gene83443:CDS 30.0%
!! AAACCAATTTGTTGTACATG+TGG - chr5.4:17034044-17034063 MS.gene83443:intron 30.0%
!! AAATTGGCTTGATTAACTGT+TGG + chr5.4:17033982-17034001 None:intergenic 30.0%
!! TAATATCTCTGAAACTTGGA+TGG - chr5.4:17034267-17034286 MS.gene83443:CDS 30.0%
AATCACATTACCACTGAACT+AGG + chr5.4:17034083-17034102 None:intergenic 35.0%
ACTGTCTCCTACAAACTATA+TGG - chr5.4:17032576-17032595 MS.gene83443:intron 35.0%
AGAACTATGGAACAAGTTAC+TGG - chr5.4:17033698-17033717 MS.gene83443:intron 35.0%
AGTGCATCTCTAATAACTGT+TGG + chr5.4:17033235-17033254 None:intergenic 35.0%
AGTTTATCAGCTTCTGACAT+AGG + chr5.4:17033764-17033783 None:intergenic 35.0%
ATGAAAAGGGAAGATGAACA+AGG - chr5.4:17031790-17031809 MS.gene83443:CDS 35.0%
ATGAACAAGGACTTGAAGAA+TGG - chr5.4:17031803-17031822 MS.gene83443:CDS 35.0%
CAAAAGATGAACAAAGCAGA+TGG - chr5.4:17034319-17034338 MS.gene83443:CDS 35.0%
CTCTTTCTTTCTTCAGATAG+AGG + chr5.4:17032529-17032548 None:intergenic 35.0%
CTGAAGAAAGAAAGAGCAAA+TGG - chr5.4:17032533-17032552 MS.gene83443:CDS 35.0%
GAAAGGCTCGAATAACAAAT+TGG + chr5.4:17033998-17034017 None:intergenic 35.0%
GAACAGAGAATGAAGTTGAA+CGG - chr5.4:17032304-17032323 MS.gene83443:CDS 35.0%
GAATGTTGGATTGCATAAGA+AGG + chr5.4:17031871-17031890 None:intergenic 35.0%
GATGCTGCTAAAGTTCAATA+TGG - chr5.4:17033863-17033882 MS.gene83443:intron 35.0%
GCAATATTCAACATCGAACT+TGG + chr5.4:17032384-17032403 None:intergenic 35.0%
GCTAAGTGCAACATCTTATT+TGG - chr5.4:17032954-17032973 MS.gene83443:CDS 35.0%
GTGTAGCTATTATCACATCT+TGG + chr5.4:17034399-17034418 None:intergenic 35.0%
GTGTATGTTGTTATCTCTGT+AGG - chr5.4:17034105-17034124 MS.gene83443:CDS 35.0%
GTTTATCAGCTTCTGACATA+GGG + chr5.4:17033763-17033782 None:intergenic 35.0%
TACCTCAAAGATTCTACCAT+TGG + chr5.4:17032632-17032651 None:intergenic 35.0%
TATTAGAGATGCACTTGCAA+AGG - chr5.4:17033240-17033259 MS.gene83443:intron 35.0%
TGAACAAGGACTTGAAGAAT+GGG - chr5.4:17031804-17031823 MS.gene83443:CDS 35.0%
TGCTAAAGTTCAATATGGCA+AGG - chr5.4:17033868-17033887 MS.gene83443:intron 35.0%
! AACTTCATGGTCTTTTGTGA+AGG - chr5.4:17033736-17033755 MS.gene83443:intron 35.0%
! ACTTCATGGTCTTTTGTGAA+GGG - chr5.4:17033737-17033756 MS.gene83443:intron 35.0%
! AGCTCAACCATATAGTTTGT+AGG + chr5.4:17032586-17032605 None:intergenic 35.0%
! AGTTCAGTGGTAATGTGATT+TGG - chr5.4:17034083-17034102 MS.gene83443:intron 35.0%
! CAATGGTGAAAACAGAGTTT+TGG - chr5.4:17033005-17033024 MS.gene83443:CDS 35.0%
! GTATCAGAAAGACCAGTTTT+TGG + chr5.4:17033115-17033134 None:intergenic 35.0%
! TTACTTGGTGAAGATGTTAC+TGG - chr5.4:17031928-17031947 MS.gene83443:CDS 35.0%
! TTTTGGTGAGCTATGGAAAT+TGG - chr5.4:17032501-17032520 MS.gene83443:CDS 35.0%
!! CAACGACTAAGTTGATAAGA+AGG + chr5.4:17032018-17032037 None:intergenic 35.0%
!! GTGAAAACAGAGTTTTGGTA+TGG - chr5.4:17033010-17033029 MS.gene83443:CDS 35.0%
!!! TTACTGTTTTTGGTGAGCTA+TGG - chr5.4:17032494-17032513 MS.gene83443:CDS 35.0%
AAAGACCATGAAGTTCGAAC+CGG + chr5.4:17033731-17033750 None:intergenic 40.0%
AATGCCATCACAAACTTGTC+AGG - chr5.4:17031988-17032007 MS.gene83443:intron 40.0%
ACAAGTTACTGGCAAATCAC+CGG - chr5.4:17033709-17033728 MS.gene83443:intron 40.0%
ACAGGATGCACTTGATTCAA+TGG - chr5.4:17032988-17033007 MS.gene83443:CDS 40.0%
AGATGTTACTGGAGGAACTA+AGG - chr5.4:17031939-17031958 MS.gene83443:CDS 40.0%
ATGAACCAACCTCTTTCTTG+CGG + chr5.4:17033137-17033156 None:intergenic 40.0%
ATTTGGCAGCCTTGAATACT+TGG + chr5.4:17033177-17033196 None:intergenic 40.0%
CATACCTGACAAGTTTGTGA+TGG + chr5.4:17031995-17032014 None:intergenic 40.0%
CTCGTTGAAAGAGAGAACTA+TGG - chr5.4:17033685-17033704 MS.gene83443:intron 40.0%
GAATGTTCTATGTTGCAGTC+TGG - chr5.4:17033524-17033543 MS.gene83443:CDS 40.0%
GATGTTACTGGAGGAACTAA+GGG - chr5.4:17031940-17031959 MS.gene83443:CDS 40.0%
GCAGCATCAAGAAATGTTTG+AGG + chr5.4:17033851-17033870 None:intergenic 40.0%
GCTAAGCAAAACAATGCCAA+TGG - chr5.4:17032613-17032632 MS.gene83443:intron 40.0%
GGATATTGGACATTCCATTC+TGG - chr5.4:17034126-17034145 MS.gene83443:CDS 40.0%
GGCTAAATTTCCAAGAACTC+TGG + chr5.4:17034161-17034180 None:intergenic 40.0%
TAAGCATAGAGTCCAACTTC+TGG + chr5.4:17032789-17032808 None:intergenic 40.0%
TAGAAAGGCTCGAATGTAGA+TGG + chr5.4:17033948-17033967 None:intergenic 40.0%
TCACCTCAAGTACCAAAAAC+TGG - chr5.4:17033100-17033119 MS.gene83443:CDS 40.0%
TCTCTAATAACTGTTGGCAC+AGG + chr5.4:17033229-17033248 None:intergenic 40.0%
TCTTCAAGCAAAGATGCGTT+TGG - chr5.4:17031742-17031761 MS.gene83443:CDS 40.0%
TGATAATAGCTACACCAAGC+AGG - chr5.4:17034404-17034423 MS.gene83443:CDS 40.0%
TGCCAATGGTAGAATCTTTG+AGG - chr5.4:17032627-17032646 MS.gene83443:intron 40.0%
TGGCCACATGTACAACAAAT+TGG + chr5.4:17034050-17034069 None:intergenic 40.0%
TGTACATGTGGCCAAAAAGT+TGG - chr5.4:17034056-17034075 MS.gene83443:intron 40.0%
TTCTATGTTGCAGTCTGGAA+AGG - chr5.4:17033529-17033548 MS.gene83443:CDS 40.0%
TTGACAGCTGAATCAACTTC+TGG - chr5.4:17033581-17033600 MS.gene83443:CDS 40.0%
TTGACTACGAGTGTCTAATG+TGG - chr5.4:17032214-17032233 MS.gene83443:intron 40.0%
TTTCTGATACCGCAAGAAAG+AGG - chr5.4:17033125-17033144 MS.gene83443:intron 40.0%
! AAAAGTTGGTCCTAGTTCAG+TGG - chr5.4:17034070-17034089 MS.gene83443:intron 40.0%
! AAGAAAGAGGTTGGTTCATC+AGG - chr5.4:17033138-17033157 MS.gene83443:intron 40.0%
! AGAAAGAGGTTGGTTCATCA+GGG - chr5.4:17033139-17033158 MS.gene83443:intron 40.0%
! CTGAACTAGGACCAACTTTT+TGG + chr5.4:17034070-17034089 None:intergenic 40.0%
!! AACAGAGTTTTGGTATGGTG+AGG - chr5.4:17033015-17033034 MS.gene83443:CDS 40.0%
!! ACAGAGTTTTGGTATGGTGA+GGG - chr5.4:17033016-17033035 MS.gene83443:CDS 40.0%
!! GCTGTAAAAGTGTTTCAGCA+CGG + chr5.4:17033802-17033821 None:intergenic 40.0%
!! TATCTCTGAAACTTGGATGG+TGG - chr5.4:17034270-17034289 MS.gene83443:CDS 40.0%
!! TTGGCATTGTTTTGCTTAGC+AGG + chr5.4:17032613-17032632 None:intergenic 40.0%
!!! AGACCAGTTTTTGGTACTTG+AGG + chr5.4:17033106-17033125 None:intergenic 40.0%
!!! GTTTTTGGTACTTGAGGTGA+TGG + chr5.4:17033100-17033119 None:intergenic 40.0%
AAGGGAAAGACATGAGTGTG+CGG - chr5.4:17033053-17033072 MS.gene83443:CDS 45.0%
AATGGCGAAGAGAAATGGAC+TGG - chr5.4:17032551-17032570 MS.gene83443:intron 45.0%
AGCAGAACAAGTAGAGGAGA+CGG - chr5.4:17031679-17031698 MS.gene83443:CDS 45.0%
CACACTCATGTCTTTCCCTT+CGG + chr5.4:17033053-17033072 None:intergenic 45.0%
CTTGGTGAAGATGTTACTGG+AGG - chr5.4:17031931-17031950 MS.gene83443:CDS 45.0%
GAAGCGTATTCCAGAGTTCT+TGG - chr5.4:17034148-17034167 MS.gene83443:CDS 45.0%
GAGCAAATGGCGAAGAGAAA+TGG - chr5.4:17032546-17032565 MS.gene83443:CDS 45.0%
GAGGAAAGCAGAACAAGTAG+AGG - chr5.4:17031673-17031692 MS.gene83443:CDS 45.0%
GTGTGCGGCATAGTAAAAGA+TGG - chr5.4:17033068-17033087 MS.gene83443:CDS 45.0%
TGAATGTCTGCACGAGCTTT+AGG + chr5.4:17032748-17032767 None:intergenic 45.0%
TGATACCGCAAGAAAGAGGT+TGG - chr5.4:17033129-17033148 MS.gene83443:intron 45.0%
TGCGGCATAGTAAAAGATGG+TGG - chr5.4:17033071-17033090 MS.gene83443:CDS 45.0%
TGTCTGGTGCATTAGTAGAG+AGG - chr5.4:17034432-17034451 MS.gene83443:CDS 45.0%
! TCTGGAATACGCTTCCAGAA+TGG + chr5.4:17034143-17034162 None:intergenic 45.0%
!! AATCACCGGTTCGAACTTCA+TGG - chr5.4:17033723-17033742 MS.gene83443:intron 45.0%
!! TAAGGGCATCACTACAGCTT+TGG - chr5.4:17031957-17031976 MS.gene83443:CDS 45.0%
AACTCACTAAGTTGCTCCCC+TGG - chr5.4:17034238-17034257 MS.gene83443:CDS 50.0%
AGAACAAGTAGAGGAGACGG+AGG - chr5.4:17031682-17031701 MS.gene83443:CDS 50.0%
CAGTCTGGAAAGGCAAACCT+TGG - chr5.4:17033539-17033558 MS.gene83443:CDS 50.0%
CCTTGGACAAGAACTGCACA+AGG - chr5.4:17033556-17033575 MS.gene83443:CDS 50.0%
CCTTGTGCAGTTCTTGTCCA+AGG + chr5.4:17033559-17033578 None:intergenic 50.0%
GGTCTCAAGGGCCATATGTT+CGG + chr5.4:17033639-17033658 None:intergenic 50.0%
GGTGGTACGCCAAGTATTCA+AGG - chr5.4:17033165-17033184 MS.gene83443:intron 50.0%
TCTTCCAGCACTCCAGAAGT+TGG - chr5.4:17032774-17032793 MS.gene83443:intron 50.0%
! GAGGTTGGTTCATCAGGGAA+AGG - chr5.4:17033144-17033163 MS.gene83443:intron 50.0%
! GTTGGTTCATCAGGGAAAGG+TGG - chr5.4:17033147-17033166 MS.gene83443:intron 50.0%
!! GAGTTTTGGTATGGTGAGGG+AGG - chr5.4:17033019-17033038 MS.gene83443:CDS 50.0%
CACCAAGCAGGAGTAGTGTC+TGG - chr5.4:17034416-17034435 MS.gene83443:CDS 55.0%
CACCAGACACTACTCCTGCT+TGG + chr5.4:17034421-17034440 None:intergenic 55.0%
!! GAGTCCAACTTCTGGAGTGC+TGG + chr5.4:17032781-17032800 None:intergenic 55.0%
AGGGAGGAAGCAGGACCGAA+GGG - chr5.4:17033035-17033054 MS.gene83443:CDS 60.0%
GGTATGGTGAGGGAGGAAGC+AGG - chr5.4:17033026-17033045 MS.gene83443:CDS 60.0%
GAGGGAGGAAGCAGGACCGA+AGG - chr5.4:17033034-17033053 MS.gene83443:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 17031622 17034489 17031622 ID=MS.gene83443
chr5.4 mRNA 17031622 17034489 17031622 ID=MS.gene83443.t1;Parent=MS.gene83443
chr5.4 exon 17034102 17034489 17034102 ID=MS.gene83443.t1.exon1;Parent=MS.gene83443.t1
chr5.4 CDS 17034102 17034489 17034102 ID=cds.MS.gene83443.t1;Parent=MS.gene83443.t1
chr5.4 exon 17033463 17033617 17033463 ID=MS.gene83443.t1.exon2;Parent=MS.gene83443.t1
chr5.4 CDS 17033463 17033617 17033463 ID=cds.MS.gene83443.t1;Parent=MS.gene83443.t1
chr5.4 exon 17033301 17033375 17033301 ID=MS.gene83443.t1.exon3;Parent=MS.gene83443.t1
chr5.4 CDS 17033301 17033375 17033301 ID=cds.MS.gene83443.t1;Parent=MS.gene83443.t1
chr5.4 exon 17032850 17033119 17032850 ID=MS.gene83443.t1.exon4;Parent=MS.gene83443.t1
chr5.4 CDS 17032850 17033119 17032850 ID=cds.MS.gene83443.t1;Parent=MS.gene83443.t1
chr5.4 exon 17032222 17032569 17032222 ID=MS.gene83443.t1.exon5;Parent=MS.gene83443.t1
chr5.4 CDS 17032222 17032569 17032222 ID=cds.MS.gene83443.t1;Parent=MS.gene83443.t1
chr5.4 exon 17031622 17031984 17031622 ID=MS.gene83443.t1.exon6;Parent=MS.gene83443.t1
chr5.4 CDS 17031622 17031984 17031622 ID=cds.MS.gene83443.t1;Parent=MS.gene83443.t1
Gene Sequence

>MS.gene83443

ATGACATATAATGGCCTTGAAAGTTGCATTCTAAACAATCAGTCTTATGAAGAGGAAAGCAGAACAAGTAGAGGAGACGGAGGCATAACCGATTCATTTGATGACGATGATTCAAGCTGTTCTTCAAGCAAAGATGCGTTTGGATCATTCTCTTCAAAGTGTTTAACAATGAAAAGGGAAGATGAACAAGGACTTGAAGAATGGGAACTCTCAGAAAGTCCTCAACATTTTTACGTCAAAGAGAAACCTTCTTATGCAATCCAACATTCAGATATTGAAGCTATGAAGGAAAAATTTTCAAAGCTCTTACTTGGTGAAGATGTTACTGGAGGAACTAAGGGCATCACTACAGCTTTGGCACTGTCTAATGCCATCACAAACTTGTCAGGTATGCCTTCTTATCAACTTAGTCGTTGATGTTTAAAAACGTCAACATTGTTGGACCGAATTTTCTAAGCTCTTGACTATTTAAAAGGATAAACTACATCTTCAATTTATCAAGTTAACATTAAATTACATCATAATAACTGTTAAAATACCTAGTCTAAAATTAACATGATTCGTTTTAGGTTTAACTAAGATTGTGACGTTGTTGACTACGAGTGTCTAATGTGGCGCTGAGTTTTGAAACATTCTCCATAGTATAATTCAACGTTCATGTACACAAGTTTATAGCAGAAGTGAACAGAGAATGAAGTTGAACGGTGTAAACATTCTAAATATAAAAGAATAATTTGACACTTTAAAAAAGATAAAGGACCAAGTTCGATGTTGAATATTGCAAGAGTTCATGAACAGTTTCTTATTCATTTCTATTTTTCTTTCGGTTCATTTTTTGATACCAATCTATGTACTTATATGATCATACACAGTTACTGTTTTTGGTGAGCTATGGAAATTGGAACCTCTATCTGAAGAAAGAAAGAGCAAATGGCGAAGAGAAATGGACTGGTTACTGTCTCCTACAAACTATATGGTTGAGCTAGTTCCTGCTAAGCAAAACAATGCCAATGGTAGAATCTTTGAGGTATATTCATTTCAGCCAGTTAAGAAAAAGTAAACTATTTTATACATCCCTTTGCTACTAAATAAGAAAGTTTTGTTCTTGGAACAGATAATGACGCCTAAAGCTCGTGCAGACATTCACATGAATCTTCCAGCACTCCAGAAGTTGGACTCTATGCTTATCGTATGTCATCTCTTTATTGCAATCAACAACGATCTTAAACGTTCTTTTTTTCAAATTTAGCTATTCTAAGAAAGGCCTTCTGTCATTTGTTTTCTACATCTGTGCAATTTTGCACGAGATCTTTACTAGCAACATATTAGGCTGCTAAGTGCAACATCTTATTTGGATTATTTGTTGACAGGATGCACTTGATTCAATGGTGAAAACAGAGTTTTGGTATGGTGAGGGAGGAAGCAGGACCGAAGGGAAAGACATGAGTGTGCGGCATAGTAAAAGATGGTGGCTTCCATCACCTCAAGTACCAAAAACTGGTCTTTCTGATACCGCAAGAAAGAGGTTGGTTCATCAGGGAAAGGTGGTACGCCAAGTATTCAAGGCTGCCAAATCTATCAATGAAAATGTGTTGCTTGAAATGCCTGTGCCAACAGTTATTAGAGATGCACTTGCAAAGGTAATAGTTTTGTAATGTTGAATATCTTCAAGCAAATAAATTCTAATGCATCGAAGGCTTTTAACCGTATACACTTAATATGTGATTTGGTTCTTGGCACTTGATTGTGTTTTGCTTCAAACTTATTATTGCTTAAGTTTGAATATTTCATGTCATCTGACTATTTGATTATAACCTAGGACTTGTTATTGCTTAAAGCAAATCACAATCACAGGGTAGATGTTTAATAAATTAAATTGATCTTGATCTTCATTGATATGTTGAATGTTCTATGTTGCAGTCTGGAAAGGCAAACCTTGGACAAGAACTGCACAAGGTTTTGACAGCTGAATCAACTTCTGGAGAAGACATGATTAAATCTCTCAATTTGAAATCCGAACATATGGCCCTTGAGACCATTAATAAATTGGAAGCTGTTATATTCTCGTTGAAAGAGAGAACTATGGAACAAGTTACTGGCAAATCACCGGTTCGAACTTCATGGTCTTTTGTGAAGGGCCCTATGTCAGAAGCTGATAAACTTGAGTTATTATTGGACCGTGCTGAAACACTTTTACAGCTTCTTAAAATCAGATATCCCAATCTTCCTCAAACATTTCTTGATGCTGCTAAAGTTCAATATGGCAAGGTAAGTTTTTTAGTATAACACATTTGACATATTTTTTGTTATACTTTTATCTGTTCCATCTACATTCGAGCCTTTCTAAACTAAAGAAACCAACAGTTAATCAAGCCAATTTGTTATTCGAGCCTTTCTAAACTAAAGAAACCAACAGTTAATCAAACCAATTTGTTGTACATGTGGCCAAAAAGTTGGTCCTAGTTCAGTGGTAATGTGATTTGGTGTATGTTGTTATCTCTGTAGGATATTGGACATTCCATTCTGGAAGCGTATTCCAGAGTTCTTGGAAATTTAGCCTTCAGCATATTGTCTAGAATAGGAGATATATTACAAGAGGATTGTCTAAGCAGTTCTAACTCACTAAGTTGCTCCCCTGGAATAAATAATATCTCTGAAACTTGGATGGTGGATTCACATATTAAGCAATCCTTACTTCAAAAGATGAACAAAGCAGATGGACAATGTTGTGACAGTACTTCAGATTTAGAGCTCAAATCATTTGATGCTAAATCCCAAGATGTGATAATAGCTACACCAAGCAGGAGTAGTGTCTGGTGCATTAGTAGAGAGGCTTGTACGAGTGTGTCTACTCAAAATTCGCCATAG

Protein sequence

>MS.gene83443.t1

MTYNGLESCILNNQSYEEESRTSRGDGGITDSFDDDDSSCSSSKDAFGSFSSKCLTMKREDEQGLEEWELSESPQHFYVKEKPSYAIQHSDIEAMKEKFSKLLLGEDVTGGTKGITTALALSNAITNLSVTVFGELWKLEPLSEERKSKWRREMDWLLSPTNYMVELVPAKQNNANGRIFEIMTPKARADIHMNLPALQKLDSMLIDALDSMVKTEFWYGEGGSRTEGKDMSVRHSKRWWLPSPQVPKTGLSDTARKRLVHQGKVVRQVFKAAKSINENVLLEMPVPTVIRDALAKSGKANLGQELHKVLTAESTSGEDMIKSLNLKSEHMALETINKLEAVIFSLKERTMEQVTGKSPVRTSWSFVKGPMSEADKLELLLDRAETLLQLLKIRYPNLPQTFLDAAKVQYGKDIGHSILEAYSRVLGNLAFSILSRIGDILQEDCLSSSNSLSCSPGINNISETWMVDSHIKQSLLQKMNKADGQCCDSTSDLELKSFDAKSQDVIIATPSRSSVWCISREACTSVSTQNSP