Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83443.t1 | XP_003612522.1 | 97.7 | 532 | 11 | 1 | 1 | 532 | 28 | 558 | 9.80E-293 | 1015.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83443.t1 | Q56WM6 | 61.3 | 545 | 181 | 8 | 1 | 520 | 30 | 569 | 4.6e-174 | 612.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83443.t1 | F6LPV3 | 97.7 | 532 | 11 | 1 | 1 | 532 | 28 | 558 | 7.1e-293 | 1015.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049609 | MS.gene83443 | 0.812544 | 4.02E-51 | -1.69E-46 |
MS.gene049805 | MS.gene83443 | 0.803375 | 3.59E-49 | -1.69E-46 |
MS.gene050772 | MS.gene83443 | 0.831949 | 1.25E-55 | -1.69E-46 |
MS.gene051692 | MS.gene83443 | 0.800364 | 1.49E-48 | -1.69E-46 |
MS.gene052421 | MS.gene83443 | 0.802256 | 6.11E-49 | -1.69E-46 |
MS.gene052916 | MS.gene83443 | 0.808686 | 2.74E-50 | -1.69E-46 |
MS.gene053213 | MS.gene83443 | 0.806965 | 6.37E-50 | -1.69E-46 |
MS.gene053574 | MS.gene83443 | 0.824638 | 7.24E-54 | -1.69E-46 |
MS.gene05505 | MS.gene83443 | 0.81022 | 1.28E-50 | -1.69E-46 |
MS.gene055722 | MS.gene83443 | 0.860403 | 2.12E-63 | -1.69E-46 |
MS.gene057775 | MS.gene83443 | 0.819385 | 1.19E-52 | -1.69E-46 |
MS.gene060837 | MS.gene83443 | 0.808177 | 3.52E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83443.t1 | MTR_5g025960 | 97.744 | 532 | 11 | 1 | 1 | 532 | 28 | 558 | 0.0 | 1070 |
MS.gene83443.t1 | MTR_7g065220 | 46.354 | 384 | 195 | 2 | 75 | 447 | 168 | 551 | 2.11e-113 | 350 |
MS.gene83443.t1 | MTR_4g075640 | 47.383 | 363 | 183 | 3 | 90 | 444 | 86 | 448 | 1.32e-112 | 345 |
MS.gene83443.t1 | MTR_3g069590 | 45.596 | 386 | 199 | 4 | 87 | 461 | 96 | 481 | 4.43e-111 | 343 |
MS.gene83443.t1 | MTR_5g081410 | 45.812 | 382 | 196 | 3 | 93 | 463 | 84 | 465 | 2.08e-110 | 340 |
MS.gene83443.t1 | MTR_4g019770 | 46.832 | 363 | 187 | 2 | 91 | 447 | 96 | 458 | 2.45e-107 | 331 |
MS.gene83443.t1 | MTR_2g101830 | 46.348 | 356 | 180 | 5 | 91 | 444 | 86 | 432 | 1.76e-104 | 323 |
MS.gene83443.t1 | MTR_8g030850 | 44.267 | 375 | 184 | 4 | 90 | 444 | 96 | 465 | 1.16e-101 | 314 |
MS.gene83443.t1 | MTR_6g087700 | 45.730 | 363 | 185 | 6 | 95 | 455 | 100 | 452 | 2.26e-101 | 316 |
MS.gene83443.t1 | MTR_3g069590 | 45.536 | 336 | 173 | 3 | 87 | 412 | 96 | 431 | 1.79e-97 | 302 |
MS.gene83443.t1 | MTR_7g077690 | 39.089 | 417 | 186 | 5 | 91 | 444 | 113 | 524 | 2.26e-87 | 279 |
MS.gene83443.t1 | MTR_4g013165 | 43.182 | 308 | 156 | 6 | 142 | 444 | 1 | 294 | 2.75e-80 | 256 |
MS.gene83443.t1 | MTR_5g026140 | 84.314 | 51 | 8 | 0 | 129 | 179 | 9 | 59 | 1.38e-24 | 98.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83443.t1 | AT1G31650 | 61.835 | 545 | 178 | 8 | 1 | 520 | 2 | 541 | 0.0 | 623 |
MS.gene83443.t1 | AT1G31650 | 61.835 | 545 | 178 | 8 | 1 | 520 | 30 | 569 | 0.0 | 622 |
MS.gene83443.t1 | AT4G38430 | 48.077 | 364 | 180 | 3 | 90 | 444 | 89 | 452 | 1.51e-113 | 347 |
MS.gene83443.t1 | AT5G05940 | 45.128 | 390 | 199 | 3 | 87 | 461 | 98 | 487 | 1.94e-111 | 344 |
MS.gene83443.t1 | AT5G02010 | 46.631 | 371 | 187 | 3 | 90 | 451 | 69 | 437 | 1.76e-110 | 340 |
MS.gene83443.t1 | AT4G00460 | 42.117 | 444 | 211 | 9 | 23 | 444 | 47 | 466 | 2.70e-105 | 324 |
MS.gene83443.t1 | AT4G00460 | 42.117 | 444 | 211 | 9 | 23 | 444 | 47 | 466 | 2.70e-105 | 324 |
MS.gene83443.t1 | AT3G24620 | 43.716 | 366 | 196 | 3 | 88 | 452 | 82 | 438 | 3.47e-102 | 317 |
MS.gene83443.t1 | AT1G79860 | 45.658 | 357 | 181 | 6 | 90 | 444 | 91 | 436 | 4.56e-102 | 317 |
MS.gene83443.t1 | AT4G13240 | 45.429 | 361 | 187 | 4 | 88 | 447 | 71 | 422 | 1.75e-101 | 315 |
MS.gene83443.t1 | AT1G01700 | 44.186 | 387 | 192 | 5 | 72 | 444 | 102 | 478 | 1.86e-100 | 311 |
MS.gene83443.t1 | AT3G16130 | 42.119 | 387 | 210 | 5 | 70 | 453 | 71 | 446 | 3.77e-97 | 305 |
MS.gene83443.t1 | AT5G05940 | 44.152 | 342 | 179 | 2 | 87 | 416 | 98 | 439 | 5.14e-97 | 303 |
MS.gene83443.t1 | AT1G52240 | 43.923 | 362 | 190 | 5 | 87 | 447 | 100 | 449 | 1.27e-95 | 301 |
MS.gene83443.t1 | AT1G01700 | 38.511 | 470 | 221 | 8 | 27 | 444 | 55 | 508 | 7.65e-94 | 295 |
MS.gene83443.t1 | AT3G55660 | 42.975 | 363 | 198 | 4 | 88 | 441 | 104 | 466 | 9.78e-93 | 295 |
MS.gene83443.t1 | AT5G19560 | 44.044 | 361 | 192 | 4 | 88 | 446 | 41 | 393 | 4.80e-90 | 285 |
MS.gene83443.t1 | AT5G19560 | 44.044 | 361 | 192 | 4 | 88 | 446 | 41 | 393 | 4.80e-90 | 285 |
MS.gene83443.t1 | AT5G19560 | 44.044 | 361 | 192 | 4 | 88 | 446 | 60 | 412 | 8.54e-90 | 285 |
MS.gene83443.t1 | AT2G45890 | 41.711 | 374 | 193 | 5 | 88 | 444 | 90 | 455 | 1.24e-87 | 278 |
MS.gene83443.t1 | AT1G01700 | 42.857 | 364 | 177 | 7 | 72 | 414 | 102 | 455 | 3.21e-85 | 271 |
MS.gene83443.t1 | AT4G00460 | 42.814 | 334 | 166 | 5 | 128 | 444 | 8 | 333 | 4.71e-83 | 262 |
MS.gene83443.t1 | AT3G55660 | 41.317 | 334 | 187 | 4 | 88 | 412 | 104 | 437 | 1.83e-81 | 261 |
MS.gene83443.t1 | AT5G19560 | 42.508 | 327 | 178 | 4 | 88 | 412 | 60 | 378 | 4.67e-76 | 245 |
MS.gene83443.t1 | AT4G00460 | 43.599 | 289 | 132 | 5 | 23 | 296 | 47 | 319 | 5.37e-68 | 223 |
MS.gene83443.t1 | AT1G01700 | 42.361 | 288 | 137 | 4 | 27 | 296 | 55 | 331 | 5.47e-65 | 216 |
MS.gene83443.t1 | AT1G01700 | 42.361 | 288 | 137 | 4 | 27 | 296 | 55 | 331 | 5.47e-65 | 216 |
MS.gene83443.t1 | AT5G19560 | 40.449 | 267 | 149 | 4 | 182 | 446 | 5 | 263 | 8.93e-52 | 181 |
Find 104 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACAGCTTCCAATTTATTAA+TGG | 0.226323 | 5.4:+17032432 | None:intergenic |
CCTTGAGACCATTAATAAAT+TGG | 0.239944 | 5.4:-17032440 | MS.gene83443:CDS |
TGATAAACTTGAGTTATTAT+TGG | 0.246352 | 5.4:-17032314 | MS.gene83443:CDS |
TTGACAGCTGAATCAACTTC+TGG | 0.292107 | 5.4:-17032508 | MS.gene83443:CDS |
TCAGGAATTATGACATATAA+TGG | 0.295381 | 5.4:-17034476 | None:intergenic |
TTGTTATCTCTGTAGGATAT+TGG | 0.303057 | 5.4:-17031977 | MS.gene83443:intron |
GAAGCGTATTCCAGAGTTCT+TGG | 0.321753 | 5.4:-17031941 | MS.gene83443:CDS |
AAGAAAGAGGTTGGTTCATC+AGG | 0.325300 | 5.4:-17032951 | MS.gene83443:CDS |
AAGAAATGTTTGAGGAAGAT+TGG | 0.333774 | 5.4:+17032249 | None:intergenic |
ATTTGGCAGCCTTGAATACT+TGG | 0.340330 | 5.4:+17032915 | None:intergenic |
CTCTTTCTTTCTTCAGATAG+AGG | 0.341999 | 5.4:+17033563 | None:intergenic |
TCAGAGATATTATTTATTCC+AGG | 0.347750 | 5.4:+17031833 | None:intergenic |
TTACTTGGTGAAGATGTTAC+TGG | 0.361690 | 5.4:-17034161 | MS.gene83443:CDS |
CAATGGTGAAAACAGAGTTT+TGG | 0.364768 | 5.4:-17033084 | MS.gene83443:CDS |
GAGCAAATGGCGAAGAGAAA+TGG | 0.382512 | 5.4:-17033543 | MS.gene83443:CDS |
GTGTAGCTATTATCACATCT+TGG | 0.389486 | 5.4:+17031693 | None:intergenic |
GGATATTGGACATTCCATTC+TGG | 0.394307 | 5.4:-17031963 | MS.gene83443:CDS |
TCTTCAAGCAAAGATGCGTT+TGG | 0.398072 | 5.4:-17034347 | MS.gene83443:CDS |
CAAAGTGTTTAACAATGAAA+AGG | 0.400663 | 5.4:-17034313 | MS.gene83443:CDS |
GATGCTGCTAAAGTTCAATA+TGG | 0.402749 | 5.4:-17032226 | MS.gene83443:CDS |
TAAGCATAGAGTCCAACTTC+TGG | 0.406157 | 5.4:+17033303 | None:intergenic |
CACACTCATGTCTTTCCCTT+CGG | 0.412875 | 5.4:+17033039 | None:intergenic |
TGTAGCTATTATCACATCTT+GGG | 0.415683 | 5.4:+17031694 | None:intergenic |
TGTTTAGAATGCAACTTTCA+AGG | 0.431869 | 5.4:+17034453 | None:intergenic |
TGAATGTCTGCACGAGCTTT+AGG | 0.436123 | 5.4:+17033344 | None:intergenic |
TAGCTTCAATATCTGAATGT+TGG | 0.436489 | 5.4:+17034207 | None:intergenic |
AATCACCGGTTCGAACTTCA+TGG | 0.438603 | 5.4:-17032366 | MS.gene83443:CDS |
AGAAATGTTTGAGGAAGATT+GGG | 0.439291 | 5.4:+17032250 | None:intergenic |
AGAACTATGGAACAAGTTAC+TGG | 0.440000 | 5.4:-17032391 | MS.gene83443:CDS |
ACTGTCTCCTACAAACTATA+TGG | 0.440626 | 5.4:-17033513 | MS.gene83443:CDS |
ATGAACAAGGACTTGAAGAA+TGG | 0.447540 | 5.4:-17034286 | MS.gene83443:CDS |
AGTTTATCAGCTTCTGACAT+AGG | 0.450031 | 5.4:+17032328 | None:intergenic |
AGCTCAACCATATAGTTTGT+AGG | 0.458810 | 5.4:+17033506 | None:intergenic |
AGATGTTACTGGAGGAACTA+AGG | 0.464313 | 5.4:-17034150 | MS.gene83443:CDS |
CTGAAGAAAGAAAGAGCAAA+TGG | 0.467672 | 5.4:-17033556 | MS.gene83443:CDS |
GGTCTCAAGGGCCATATGTT+CGG | 0.469228 | 5.4:+17032453 | None:intergenic |
TTCAGATATTGAAGCTATGA+AGG | 0.469502 | 5.4:-17034201 | MS.gene83443:CDS |
AAAGTGTTTAACAATGAAAA+GGG | 0.471202 | 5.4:-17034312 | MS.gene83443:CDS |
TAAGGGCATCACTACAGCTT+TGG | 0.471817 | 5.4:-17034132 | MS.gene83443:CDS |
AACTCACTAAGTTGCTCCCC+TGG | 0.474068 | 5.4:-17031851 | MS.gene83443:CDS |
CAATTTGAAATCCGAACATA+TGG | 0.474139 | 5.4:-17032464 | MS.gene83443:CDS |
AATGCCATCACAAACTTGTC+AGG | 0.477719 | 5.4:-17034101 | MS.gene83443:intron |
GAGTCCAACTTCTGGAGTGC+TGG | 0.477913 | 5.4:+17033311 | None:intergenic |
TGAACAAGGACTTGAAGAAT+GGG | 0.481493 | 5.4:-17034285 | MS.gene83443:CDS |
TCTTCCAGCACTCCAGAAGT+TGG | 0.489929 | 5.4:-17033315 | MS.gene83443:CDS |
GGCTAAATTTCCAAGAACTC+TGG | 0.491194 | 5.4:+17031931 | None:intergenic |
GGTGGTACGCCAAGTATTCA+AGG | 0.491614 | 5.4:-17032924 | MS.gene83443:CDS |
CCAATTTATTAATGGTCTCA+AGG | 0.492231 | 5.4:+17032440 | None:intergenic |
AGCAGAACAAGTAGAGGAGA+CGG | 0.494848 | 5.4:-17034410 | MS.gene83443:CDS |
TAAATAATATCTCTGAAACT+TGG | 0.499561 | 5.4:-17031826 | MS.gene83443:CDS |
GTTTATCAGCTTCTGACATA+GGG | 0.501172 | 5.4:+17032329 | None:intergenic |
TGCCAATGGTAGAATCTTTG+AGG | 0.504782 | 5.4:-17033462 | MS.gene83443:intron |
GAGGGAGGAAGCAGGACCGA+AGG | 0.507585 | 5.4:-17033055 | MS.gene83443:CDS |
ACAGGATGCACTTGATTCAA+TGG | 0.509215 | 5.4:-17033101 | MS.gene83443:intron |
CCTTGTGCAGTTCTTGTCCA+AGG | 0.510155 | 5.4:+17032533 | None:intergenic |
GCAGCATCAAGAAATGTTTG+AGG | 0.512844 | 5.4:+17032241 | None:intergenic |
CAATTTATTAATGGTCTCAA+GGG | 0.515889 | 5.4:+17032441 | None:intergenic |
CAGAGATATTATTTATTCCA+GGG | 0.516460 | 5.4:+17031834 | None:intergenic |
ATCATCGTCATCAAATGAAT+CGG | 0.519579 | 5.4:+17034379 | None:intergenic |
CTCGTTGAAAGAGAGAACTA+TGG | 0.524461 | 5.4:-17032404 | MS.gene83443:CDS |
CACCAAGCAGGAGTAGTGTC+TGG | 0.526331 | 5.4:-17031673 | MS.gene83443:CDS |
TGATACCGCAAGAAAGAGGT+TGG | 0.530544 | 5.4:-17032960 | MS.gene83443:CDS |
TACCTCAAAGATTCTACCAT+TGG | 0.531632 | 5.4:+17033460 | None:intergenic |
TTCAGCATATTGTCTAGAAT+AGG | 0.545508 | 5.4:-17031908 | MS.gene83443:CDS |
CACCAGACACTACTCCTGCT+TGG | 0.546870 | 5.4:+17031671 | None:intergenic |
AAAGACCATGAAGTTCGAAC+CGG | 0.547808 | 5.4:+17032361 | None:intergenic |
TCTGGAATACGCTTCCAGAA+TGG | 0.548749 | 5.4:+17031949 | None:intergenic |
TAATATCTCTGAAACTTGGA+TGG | 0.549387 | 5.4:-17031822 | MS.gene83443:CDS |
GAATGTTGGATTGCATAAGA+AGG | 0.550363 | 5.4:+17034221 | None:intergenic |
AAACAATCAGTCTTATGAAG+AGG | 0.554003 | 5.4:-17034435 | MS.gene83443:CDS |
TTCTATGTTGCAGTCTGGAA+AGG | 0.559632 | 5.4:-17032560 | MS.gene83443:intron |
AGAGATATTATTTATTCCAG+GGG | 0.565546 | 5.4:+17031835 | None:intergenic |
TATTAGAGATGCACTTGCAA+AGG | 0.565718 | 5.4:-17032849 | MS.gene83443:intron |
AGTGCATCTCTAATAACTGT+TGG | 0.565972 | 5.4:+17032857 | None:intergenic |
GATGTTACTGGAGGAACTAA+GGG | 0.566443 | 5.4:-17034149 | MS.gene83443:CDS |
AGAAAGAGGTTGGTTCATCA+GGG | 0.566470 | 5.4:-17032950 | MS.gene83443:CDS |
AGGGAGGAAGCAGGACCGAA+GGG | 0.567526 | 5.4:-17033054 | MS.gene83443:CDS |
TTTCTGATACCGCAAGAAAG+AGG | 0.568553 | 5.4:-17032964 | MS.gene83443:CDS |
TGATAATAGCTACACCAAGC+AGG | 0.570801 | 5.4:-17031685 | MS.gene83443:CDS |
CAAAAGATGAACAAAGCAGA+TGG | 0.584707 | 5.4:-17031770 | MS.gene83443:CDS |
GGTATGGTGAGGGAGGAAGC+AGG | 0.588600 | 5.4:-17033063 | MS.gene83443:CDS |
CAGTCTGGAAAGGCAAACCT+TGG | 0.594632 | 5.4:-17032550 | MS.gene83443:CDS |
ACAAGTTACTGGCAAATCAC+CGG | 0.594634 | 5.4:-17032380 | MS.gene83443:CDS |
GAGGAAAGCAGAACAAGTAG+AGG | 0.594944 | 5.4:-17034416 | MS.gene83443:CDS |
TGCTAAAGTTCAATATGGCA+AGG | 0.601273 | 5.4:-17032221 | MS.gene83443:intron |
TCTCTAATAACTGTTGGCAC+AGG | 0.604103 | 5.4:+17032863 | None:intergenic |
AATAGGAGATATATTACAAG+AGG | 0.605594 | 5.4:-17031891 | MS.gene83443:CDS |
TATTCTAGACAATATGCTGA+AGG | 0.609235 | 5.4:+17031910 | None:intergenic |
GAGGTTGGTTCATCAGGGAA+AGG | 0.610824 | 5.4:-17032945 | MS.gene83443:CDS |
TATCTCTGAAACTTGGATGG+TGG | 0.612314 | 5.4:-17031819 | MS.gene83443:CDS |
ATGAACCAACCTCTTTCTTG+CGG | 0.616377 | 5.4:+17032955 | None:intergenic |
CCTTGGACAAGAACTGCACA+AGG | 0.620947 | 5.4:-17032533 | MS.gene83443:CDS |
AATGGCGAAGAGAAATGGAC+TGG | 0.621786 | 5.4:-17033538 | MS.gene83443:CDS |
GCTAAGCAAAACAATGCCAA+TGG | 0.628095 | 5.4:-17033476 | MS.gene83443:CDS |
GTTGGTTCATCAGGGAAAGG+TGG | 0.638880 | 5.4:-17032942 | MS.gene83443:CDS |
CATACCTGACAAGTTTGTGA+TGG | 0.644339 | 5.4:+17034097 | None:intergenic |
TGTCTGGTGCATTAGTAGAG+AGG | 0.658828 | 5.4:-17031657 | MS.gene83443:CDS |
CTTGGTGAAGATGTTACTGG+AGG | 0.664082 | 5.4:-17034158 | MS.gene83443:CDS |
AGAACAAGTAGAGGAGACGG+AGG | 0.669728 | 5.4:-17034407 | MS.gene83443:CDS |
ATGAAAAGGGAAGATGAACA+AGG | 0.671938 | 5.4:-17034299 | MS.gene83443:CDS |
GTGTGCGGCATAGTAAAAGA+TGG | 0.678764 | 5.4:-17033021 | MS.gene83443:CDS |
TGCGGCATAGTAAAAGATGG+TGG | 0.684737 | 5.4:-17033018 | MS.gene83443:CDS |
AAGGGAAAGACATGAGTGTG+CGG | 0.684788 | 5.4:-17033036 | MS.gene83443:CDS |
GCTGTAAAAGTGTTTCAGCA+CGG | 0.690145 | 5.4:+17032290 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTCATTTCTATTTTTCTTT+CGG | - | chr5.4:17032426-17032445 | MS.gene83443:CDS | 15.0% |
!! | AATCACATATTAAGTGTATA+CGG | + | chr5.4:17033329-17033348 | None:intergenic | 20.0% |
!! | TATACACTTAATATGTGATT+TGG | - | chr5.4:17033329-17033348 | MS.gene83443:CDS | 20.0% |
!! | TGATAAACTTGAGTTATTAT+TGG | - | chr5.4:17033775-17033794 | MS.gene83443:intron | 20.0% |
!!! | AAAGTGTTTAACAATGAAAA+GGG | - | chr5.4:17031777-17031796 | MS.gene83443:CDS | 20.0% |
!!! | AAATAAGAAAGTTTTGTTCT+TGG | - | chr5.4:17032708-17032727 | MS.gene83443:intron | 20.0% |
!!! | AAATTAACATGATTCGTTTT+AGG | - | chr5.4:17032169-17032188 | MS.gene83443:intron | 20.0% |
!!! | AAATTTAGCTATTCTAAGAA+AGG | - | chr5.4:17032863-17032882 | MS.gene83443:CDS | 20.0% |
!!! | AATCATGTTAATTTTAGACT+AGG | + | chr5.4:17032163-17032182 | None:intergenic | 20.0% |
!!! | ATAGTTTACTTTTTCTTAAC+TGG | + | chr5.4:17032667-17032686 | None:intergenic | 20.0% |
!!! | TAAATAATATCTCTGAAACT+TGG | - | chr5.4:17034263-17034282 | MS.gene83443:CDS | 20.0% |
!!! | TGACACTTTAAAAAAGATAA+AGG | - | chr5.4:17032357-17032376 | MS.gene83443:CDS | 20.0% |
! | AACAGCTTCCAATTTATTAA+TGG | + | chr5.4:17033660-17033679 | None:intergenic | 25.0% |
! | AATAAATTCTAATGCATCGA+AGG | - | chr5.4:17033296-17033315 | MS.gene83443:intron | 25.0% |
! | AATAGGAGATATATTACAAG+AGG | - | chr5.4:17034198-17034217 | MS.gene83443:CDS | 25.0% |
! | AGAGATATTATTTATTCCAG+GGG | + | chr5.4:17034257-17034276 | None:intergenic | 25.0% |
! | ATCTTTACTAGCAACATATT+AGG | - | chr5.4:17032929-17032948 | MS.gene83443:CDS | 25.0% |
! | ATGAACGTTGAATTATACTA+TGG | + | chr5.4:17032261-17032280 | None:intergenic | 25.0% |
! | CAATTTATTAATGGTCTCAA+GGG | + | chr5.4:17033651-17033670 | None:intergenic | 25.0% |
! | CAGAGATATTATTTATTCCA+GGG | + | chr5.4:17034258-17034277 | None:intergenic | 25.0% |
! | GATCATATAAGTACATAGAT+TGG | + | chr5.4:17032466-17032485 | None:intergenic | 25.0% |
! | TAAGCTCTTGACTATTTAAA+AGG | - | chr5.4:17032075-17032094 | MS.gene83443:intron | 25.0% |
! | TCAGAGATATTATTTATTCC+AGG | + | chr5.4:17034259-17034278 | None:intergenic | 25.0% |
! | TGACTATTTGATTATAACCT+AGG | - | chr5.4:17033419-17033438 | MS.gene83443:intron | 25.0% |
! | TTTAAAAACGTCAACATTGT+TGG | - | chr5.4:17032041-17032060 | MS.gene83443:intron | 25.0% |
!! | AAATTTTCAAAGCTCTTACT+TGG | - | chr5.4:17031913-17031932 | MS.gene83443:CDS | 25.0% |
!! | ACTTTCTTATTTAGTAGCAA+AGG | + | chr5.4:17032700-17032719 | None:intergenic | 25.0% |
!! | CAAAGTGTTTAACAATGAAA+AGG | - | chr5.4:17031776-17031795 | MS.gene83443:CDS | 25.0% |
!! | CACATTTTCATTGATAGATT+TGG | + | chr5.4:17033194-17033213 | None:intergenic | 25.0% |
!! | CTTTCTTATTTAGTAGCAAA+GGG | + | chr5.4:17032699-17032718 | None:intergenic | 25.0% |
!! | TATTTGGATTATTTGTTGAC+AGG | - | chr5.4:17032970-17032989 | MS.gene83443:CDS | 25.0% |
!! | TTGGTTTCTTTAGTTTAGAA+AGG | + | chr5.4:17033963-17033982 | None:intergenic | 25.0% |
!!! | AAATTGGTTTGATTAACTGT+TGG | + | chr5.4:17034034-17034053 | None:intergenic | 25.0% |
!!! | TTAATATGTGATTTGGTTCT+TGG | - | chr5.4:17033336-17033355 | MS.gene83443:CDS | 25.0% |
!!! | TTTGTTCATCTTTTGAAGTA+AGG | + | chr5.4:17034314-17034333 | None:intergenic | 25.0% |
AAGAAATGTTTGAGGAAGAT+TGG | + | chr5.4:17033843-17033862 | None:intergenic | 30.0% | |
AGAAATGTTTGAGGAAGATT+GGG | + | chr5.4:17033842-17033861 | None:intergenic | 30.0% | |
AGTCAAGAGCTTAGAAAATT+CGG | + | chr5.4:17032068-17032087 | None:intergenic | 30.0% | |
ATCATCGTCATCAAATGAAT+CGG | + | chr5.4:17031713-17031732 | None:intergenic | 30.0% | |
CCAATTTATTAATGGTCTCA+AGG | + | chr5.4:17033652-17033671 | None:intergenic | 30.0% | |
CCTTGAGACCATTAATAAAT+TGG | - | chr5.4:17033649-17033668 | MS.gene83443:intron | 30.0% | |
TAAAGCAAATCACAATCACA+GGG | - | chr5.4:17033455-17033474 | MS.gene83443:intron | 30.0% | |
TAGCTTCAATATCTGAATGT+TGG | + | chr5.4:17031885-17031904 | None:intergenic | 30.0% | |
TATTCTAGACAATATGCTGA+AGG | + | chr5.4:17034182-17034201 | None:intergenic | 30.0% | |
TCTTTGACGTAAAAATGTTG+AGG | + | chr5.4:17031844-17031863 | None:intergenic | 30.0% | |
TGTAGAAAACAAATGACAGA+AGG | + | chr5.4:17032889-17032908 | None:intergenic | 30.0% | |
TGTAGCTATTATCACATCTT+GGG | + | chr5.4:17034398-17034417 | None:intergenic | 30.0% | |
TTAAAGCAAATCACAATCAC+AGG | - | chr5.4:17033454-17033473 | MS.gene83443:intron | 30.0% | |
TTCAGATATTGAAGCTATGA+AGG | - | chr5.4:17031888-17031907 | MS.gene83443:CDS | 30.0% | |
TTGTTATCTCTGTAGGATAT+TGG | - | chr5.4:17034112-17034131 | MS.gene83443:CDS | 30.0% | |
TTTAAGCAATAACAAGTCCT+AGG | + | chr5.4:17033439-17033458 | None:intergenic | 30.0% | |
! | AAACAATCAGTCTTATGAAG+AGG | - | chr5.4:17031654-17031673 | MS.gene83443:CDS | 30.0% |
! | CAATTTGAAATCCGAACATA+TGG | - | chr5.4:17033625-17033644 | MS.gene83443:intron | 30.0% |
! | TCATACACAGTTACTGTTTT+TGG | - | chr5.4:17032484-17032503 | MS.gene83443:CDS | 30.0% |
! | TGTTTAGAATGCAACTTTCA+AGG | + | chr5.4:17031639-17031658 | None:intergenic | 30.0% |
! | TTCAGCATATTGTCTAGAAT+AGG | - | chr5.4:17034181-17034200 | MS.gene83443:CDS | 30.0% |
!! | AAACCAATTTGTTGTACATG+TGG | - | chr5.4:17034044-17034063 | MS.gene83443:intron | 30.0% |
!! | AAATTGGCTTGATTAACTGT+TGG | + | chr5.4:17033982-17034001 | None:intergenic | 30.0% |
!! | TAATATCTCTGAAACTTGGA+TGG | - | chr5.4:17034267-17034286 | MS.gene83443:CDS | 30.0% |
AATCACATTACCACTGAACT+AGG | + | chr5.4:17034083-17034102 | None:intergenic | 35.0% | |
ACTGTCTCCTACAAACTATA+TGG | - | chr5.4:17032576-17032595 | MS.gene83443:intron | 35.0% | |
AGAACTATGGAACAAGTTAC+TGG | - | chr5.4:17033698-17033717 | MS.gene83443:intron | 35.0% | |
AGTGCATCTCTAATAACTGT+TGG | + | chr5.4:17033235-17033254 | None:intergenic | 35.0% | |
AGTTTATCAGCTTCTGACAT+AGG | + | chr5.4:17033764-17033783 | None:intergenic | 35.0% | |
ATGAAAAGGGAAGATGAACA+AGG | - | chr5.4:17031790-17031809 | MS.gene83443:CDS | 35.0% | |
ATGAACAAGGACTTGAAGAA+TGG | - | chr5.4:17031803-17031822 | MS.gene83443:CDS | 35.0% | |
CAAAAGATGAACAAAGCAGA+TGG | - | chr5.4:17034319-17034338 | MS.gene83443:CDS | 35.0% | |
CTCTTTCTTTCTTCAGATAG+AGG | + | chr5.4:17032529-17032548 | None:intergenic | 35.0% | |
CTGAAGAAAGAAAGAGCAAA+TGG | - | chr5.4:17032533-17032552 | MS.gene83443:CDS | 35.0% | |
GAAAGGCTCGAATAACAAAT+TGG | + | chr5.4:17033998-17034017 | None:intergenic | 35.0% | |
GAACAGAGAATGAAGTTGAA+CGG | - | chr5.4:17032304-17032323 | MS.gene83443:CDS | 35.0% | |
GAATGTTGGATTGCATAAGA+AGG | + | chr5.4:17031871-17031890 | None:intergenic | 35.0% | |
GATGCTGCTAAAGTTCAATA+TGG | - | chr5.4:17033863-17033882 | MS.gene83443:intron | 35.0% | |
GCAATATTCAACATCGAACT+TGG | + | chr5.4:17032384-17032403 | None:intergenic | 35.0% | |
GCTAAGTGCAACATCTTATT+TGG | - | chr5.4:17032954-17032973 | MS.gene83443:CDS | 35.0% | |
GTGTAGCTATTATCACATCT+TGG | + | chr5.4:17034399-17034418 | None:intergenic | 35.0% | |
GTGTATGTTGTTATCTCTGT+AGG | - | chr5.4:17034105-17034124 | MS.gene83443:CDS | 35.0% | |
GTTTATCAGCTTCTGACATA+GGG | + | chr5.4:17033763-17033782 | None:intergenic | 35.0% | |
TACCTCAAAGATTCTACCAT+TGG | + | chr5.4:17032632-17032651 | None:intergenic | 35.0% | |
TATTAGAGATGCACTTGCAA+AGG | - | chr5.4:17033240-17033259 | MS.gene83443:intron | 35.0% | |
TGAACAAGGACTTGAAGAAT+GGG | - | chr5.4:17031804-17031823 | MS.gene83443:CDS | 35.0% | |
TGCTAAAGTTCAATATGGCA+AGG | - | chr5.4:17033868-17033887 | MS.gene83443:intron | 35.0% | |
! | AACTTCATGGTCTTTTGTGA+AGG | - | chr5.4:17033736-17033755 | MS.gene83443:intron | 35.0% |
! | ACTTCATGGTCTTTTGTGAA+GGG | - | chr5.4:17033737-17033756 | MS.gene83443:intron | 35.0% |
! | AGCTCAACCATATAGTTTGT+AGG | + | chr5.4:17032586-17032605 | None:intergenic | 35.0% |
! | AGTTCAGTGGTAATGTGATT+TGG | - | chr5.4:17034083-17034102 | MS.gene83443:intron | 35.0% |
! | CAATGGTGAAAACAGAGTTT+TGG | - | chr5.4:17033005-17033024 | MS.gene83443:CDS | 35.0% |
! | GTATCAGAAAGACCAGTTTT+TGG | + | chr5.4:17033115-17033134 | None:intergenic | 35.0% |
! | TTACTTGGTGAAGATGTTAC+TGG | - | chr5.4:17031928-17031947 | MS.gene83443:CDS | 35.0% |
! | TTTTGGTGAGCTATGGAAAT+TGG | - | chr5.4:17032501-17032520 | MS.gene83443:CDS | 35.0% |
!! | CAACGACTAAGTTGATAAGA+AGG | + | chr5.4:17032018-17032037 | None:intergenic | 35.0% |
!! | GTGAAAACAGAGTTTTGGTA+TGG | - | chr5.4:17033010-17033029 | MS.gene83443:CDS | 35.0% |
!!! | TTACTGTTTTTGGTGAGCTA+TGG | - | chr5.4:17032494-17032513 | MS.gene83443:CDS | 35.0% |
AAAGACCATGAAGTTCGAAC+CGG | + | chr5.4:17033731-17033750 | None:intergenic | 40.0% | |
AATGCCATCACAAACTTGTC+AGG | - | chr5.4:17031988-17032007 | MS.gene83443:intron | 40.0% | |
ACAAGTTACTGGCAAATCAC+CGG | - | chr5.4:17033709-17033728 | MS.gene83443:intron | 40.0% | |
ACAGGATGCACTTGATTCAA+TGG | - | chr5.4:17032988-17033007 | MS.gene83443:CDS | 40.0% | |
AGATGTTACTGGAGGAACTA+AGG | - | chr5.4:17031939-17031958 | MS.gene83443:CDS | 40.0% | |
ATGAACCAACCTCTTTCTTG+CGG | + | chr5.4:17033137-17033156 | None:intergenic | 40.0% | |
ATTTGGCAGCCTTGAATACT+TGG | + | chr5.4:17033177-17033196 | None:intergenic | 40.0% | |
CATACCTGACAAGTTTGTGA+TGG | + | chr5.4:17031995-17032014 | None:intergenic | 40.0% | |
CTCGTTGAAAGAGAGAACTA+TGG | - | chr5.4:17033685-17033704 | MS.gene83443:intron | 40.0% | |
GAATGTTCTATGTTGCAGTC+TGG | - | chr5.4:17033524-17033543 | MS.gene83443:CDS | 40.0% | |
GATGTTACTGGAGGAACTAA+GGG | - | chr5.4:17031940-17031959 | MS.gene83443:CDS | 40.0% | |
GCAGCATCAAGAAATGTTTG+AGG | + | chr5.4:17033851-17033870 | None:intergenic | 40.0% | |
GCTAAGCAAAACAATGCCAA+TGG | - | chr5.4:17032613-17032632 | MS.gene83443:intron | 40.0% | |
GGATATTGGACATTCCATTC+TGG | - | chr5.4:17034126-17034145 | MS.gene83443:CDS | 40.0% | |
GGCTAAATTTCCAAGAACTC+TGG | + | chr5.4:17034161-17034180 | None:intergenic | 40.0% | |
TAAGCATAGAGTCCAACTTC+TGG | + | chr5.4:17032789-17032808 | None:intergenic | 40.0% | |
TAGAAAGGCTCGAATGTAGA+TGG | + | chr5.4:17033948-17033967 | None:intergenic | 40.0% | |
TCACCTCAAGTACCAAAAAC+TGG | - | chr5.4:17033100-17033119 | MS.gene83443:CDS | 40.0% | |
TCTCTAATAACTGTTGGCAC+AGG | + | chr5.4:17033229-17033248 | None:intergenic | 40.0% | |
TCTTCAAGCAAAGATGCGTT+TGG | - | chr5.4:17031742-17031761 | MS.gene83443:CDS | 40.0% | |
TGATAATAGCTACACCAAGC+AGG | - | chr5.4:17034404-17034423 | MS.gene83443:CDS | 40.0% | |
TGCCAATGGTAGAATCTTTG+AGG | - | chr5.4:17032627-17032646 | MS.gene83443:intron | 40.0% | |
TGGCCACATGTACAACAAAT+TGG | + | chr5.4:17034050-17034069 | None:intergenic | 40.0% | |
TGTACATGTGGCCAAAAAGT+TGG | - | chr5.4:17034056-17034075 | MS.gene83443:intron | 40.0% | |
TTCTATGTTGCAGTCTGGAA+AGG | - | chr5.4:17033529-17033548 | MS.gene83443:CDS | 40.0% | |
TTGACAGCTGAATCAACTTC+TGG | - | chr5.4:17033581-17033600 | MS.gene83443:CDS | 40.0% | |
TTGACTACGAGTGTCTAATG+TGG | - | chr5.4:17032214-17032233 | MS.gene83443:intron | 40.0% | |
TTTCTGATACCGCAAGAAAG+AGG | - | chr5.4:17033125-17033144 | MS.gene83443:intron | 40.0% | |
! | AAAAGTTGGTCCTAGTTCAG+TGG | - | chr5.4:17034070-17034089 | MS.gene83443:intron | 40.0% |
! | AAGAAAGAGGTTGGTTCATC+AGG | - | chr5.4:17033138-17033157 | MS.gene83443:intron | 40.0% |
! | AGAAAGAGGTTGGTTCATCA+GGG | - | chr5.4:17033139-17033158 | MS.gene83443:intron | 40.0% |
! | CTGAACTAGGACCAACTTTT+TGG | + | chr5.4:17034070-17034089 | None:intergenic | 40.0% |
!! | AACAGAGTTTTGGTATGGTG+AGG | - | chr5.4:17033015-17033034 | MS.gene83443:CDS | 40.0% |
!! | ACAGAGTTTTGGTATGGTGA+GGG | - | chr5.4:17033016-17033035 | MS.gene83443:CDS | 40.0% |
!! | GCTGTAAAAGTGTTTCAGCA+CGG | + | chr5.4:17033802-17033821 | None:intergenic | 40.0% |
!! | TATCTCTGAAACTTGGATGG+TGG | - | chr5.4:17034270-17034289 | MS.gene83443:CDS | 40.0% |
!! | TTGGCATTGTTTTGCTTAGC+AGG | + | chr5.4:17032613-17032632 | None:intergenic | 40.0% |
!!! | AGACCAGTTTTTGGTACTTG+AGG | + | chr5.4:17033106-17033125 | None:intergenic | 40.0% |
!!! | GTTTTTGGTACTTGAGGTGA+TGG | + | chr5.4:17033100-17033119 | None:intergenic | 40.0% |
AAGGGAAAGACATGAGTGTG+CGG | - | chr5.4:17033053-17033072 | MS.gene83443:CDS | 45.0% | |
AATGGCGAAGAGAAATGGAC+TGG | - | chr5.4:17032551-17032570 | MS.gene83443:intron | 45.0% | |
AGCAGAACAAGTAGAGGAGA+CGG | - | chr5.4:17031679-17031698 | MS.gene83443:CDS | 45.0% | |
CACACTCATGTCTTTCCCTT+CGG | + | chr5.4:17033053-17033072 | None:intergenic | 45.0% | |
CTTGGTGAAGATGTTACTGG+AGG | - | chr5.4:17031931-17031950 | MS.gene83443:CDS | 45.0% | |
GAAGCGTATTCCAGAGTTCT+TGG | - | chr5.4:17034148-17034167 | MS.gene83443:CDS | 45.0% | |
GAGCAAATGGCGAAGAGAAA+TGG | - | chr5.4:17032546-17032565 | MS.gene83443:CDS | 45.0% | |
GAGGAAAGCAGAACAAGTAG+AGG | - | chr5.4:17031673-17031692 | MS.gene83443:CDS | 45.0% | |
GTGTGCGGCATAGTAAAAGA+TGG | - | chr5.4:17033068-17033087 | MS.gene83443:CDS | 45.0% | |
TGAATGTCTGCACGAGCTTT+AGG | + | chr5.4:17032748-17032767 | None:intergenic | 45.0% | |
TGATACCGCAAGAAAGAGGT+TGG | - | chr5.4:17033129-17033148 | MS.gene83443:intron | 45.0% | |
TGCGGCATAGTAAAAGATGG+TGG | - | chr5.4:17033071-17033090 | MS.gene83443:CDS | 45.0% | |
TGTCTGGTGCATTAGTAGAG+AGG | - | chr5.4:17034432-17034451 | MS.gene83443:CDS | 45.0% | |
! | TCTGGAATACGCTTCCAGAA+TGG | + | chr5.4:17034143-17034162 | None:intergenic | 45.0% |
!! | AATCACCGGTTCGAACTTCA+TGG | - | chr5.4:17033723-17033742 | MS.gene83443:intron | 45.0% |
!! | TAAGGGCATCACTACAGCTT+TGG | - | chr5.4:17031957-17031976 | MS.gene83443:CDS | 45.0% |
AACTCACTAAGTTGCTCCCC+TGG | - | chr5.4:17034238-17034257 | MS.gene83443:CDS | 50.0% | |
AGAACAAGTAGAGGAGACGG+AGG | - | chr5.4:17031682-17031701 | MS.gene83443:CDS | 50.0% | |
CAGTCTGGAAAGGCAAACCT+TGG | - | chr5.4:17033539-17033558 | MS.gene83443:CDS | 50.0% | |
CCTTGGACAAGAACTGCACA+AGG | - | chr5.4:17033556-17033575 | MS.gene83443:CDS | 50.0% | |
CCTTGTGCAGTTCTTGTCCA+AGG | + | chr5.4:17033559-17033578 | None:intergenic | 50.0% | |
GGTCTCAAGGGCCATATGTT+CGG | + | chr5.4:17033639-17033658 | None:intergenic | 50.0% | |
GGTGGTACGCCAAGTATTCA+AGG | - | chr5.4:17033165-17033184 | MS.gene83443:intron | 50.0% | |
TCTTCCAGCACTCCAGAAGT+TGG | - | chr5.4:17032774-17032793 | MS.gene83443:intron | 50.0% | |
! | GAGGTTGGTTCATCAGGGAA+AGG | - | chr5.4:17033144-17033163 | MS.gene83443:intron | 50.0% |
! | GTTGGTTCATCAGGGAAAGG+TGG | - | chr5.4:17033147-17033166 | MS.gene83443:intron | 50.0% |
!! | GAGTTTTGGTATGGTGAGGG+AGG | - | chr5.4:17033019-17033038 | MS.gene83443:CDS | 50.0% |
CACCAAGCAGGAGTAGTGTC+TGG | - | chr5.4:17034416-17034435 | MS.gene83443:CDS | 55.0% | |
CACCAGACACTACTCCTGCT+TGG | + | chr5.4:17034421-17034440 | None:intergenic | 55.0% | |
!! | GAGTCCAACTTCTGGAGTGC+TGG | + | chr5.4:17032781-17032800 | None:intergenic | 55.0% |
AGGGAGGAAGCAGGACCGAA+GGG | - | chr5.4:17033035-17033054 | MS.gene83443:CDS | 60.0% | |
GGTATGGTGAGGGAGGAAGC+AGG | - | chr5.4:17033026-17033045 | MS.gene83443:CDS | 60.0% | |
GAGGGAGGAAGCAGGACCGA+AGG | - | chr5.4:17033034-17033053 | MS.gene83443:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 17031622 | 17034489 | 17031622 | ID=MS.gene83443 |
chr5.4 | mRNA | 17031622 | 17034489 | 17031622 | ID=MS.gene83443.t1;Parent=MS.gene83443 |
chr5.4 | exon | 17034102 | 17034489 | 17034102 | ID=MS.gene83443.t1.exon1;Parent=MS.gene83443.t1 |
chr5.4 | CDS | 17034102 | 17034489 | 17034102 | ID=cds.MS.gene83443.t1;Parent=MS.gene83443.t1 |
chr5.4 | exon | 17033463 | 17033617 | 17033463 | ID=MS.gene83443.t1.exon2;Parent=MS.gene83443.t1 |
chr5.4 | CDS | 17033463 | 17033617 | 17033463 | ID=cds.MS.gene83443.t1;Parent=MS.gene83443.t1 |
chr5.4 | exon | 17033301 | 17033375 | 17033301 | ID=MS.gene83443.t1.exon3;Parent=MS.gene83443.t1 |
chr5.4 | CDS | 17033301 | 17033375 | 17033301 | ID=cds.MS.gene83443.t1;Parent=MS.gene83443.t1 |
chr5.4 | exon | 17032850 | 17033119 | 17032850 | ID=MS.gene83443.t1.exon4;Parent=MS.gene83443.t1 |
chr5.4 | CDS | 17032850 | 17033119 | 17032850 | ID=cds.MS.gene83443.t1;Parent=MS.gene83443.t1 |
chr5.4 | exon | 17032222 | 17032569 | 17032222 | ID=MS.gene83443.t1.exon5;Parent=MS.gene83443.t1 |
chr5.4 | CDS | 17032222 | 17032569 | 17032222 | ID=cds.MS.gene83443.t1;Parent=MS.gene83443.t1 |
chr5.4 | exon | 17031622 | 17031984 | 17031622 | ID=MS.gene83443.t1.exon6;Parent=MS.gene83443.t1 |
chr5.4 | CDS | 17031622 | 17031984 | 17031622 | ID=cds.MS.gene83443.t1;Parent=MS.gene83443.t1 |
Gene Sequence |
Protein sequence |