AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83539

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83539.t1 MTR_4g102460 65.868 167 54 2 1 166 1 165 2.05e-57 202
MS.gene83539.t1 MTR_8g054490 95.238 105 5 0 1 105 1 105 3.28e-52 179
MS.gene83539.t1 MTR_7g105270 70.470 149 44 0 18 166 1 149 2.31e-51 185
MS.gene83539.t1 MTR_7g034745 95.745 94 4 0 1 94 1 94 7.43e-48 163
MS.gene83539.t1 MTR_7g056297 67.669 133 43 0 18 150 1 133 7.34e-43 160
MS.gene83539.t1 MTR_1g105095 64.078 103 37 0 27 129 76 178 1.41e-32 124
MS.gene83539.t1 MTR_6g045307 29.832 238 144 4 266 500 143 360 3.96e-23 105
MS.gene83539.t1 MTR_0045s0120 68.539 89 28 0 18 106 1 89 4.10e-22 92.0
MS.gene83539.t1 MTR_1g052140 29.670 273 123 8 261 500 98 334 5.25e-22 101
MS.gene83539.t1 MTR_1361s0010 72.414 58 16 0 93 150 1 58 2.66e-20 91.3
MS.gene83539.t1 MTR_7g060240 57.282 103 42 2 1 102 1 102 4.21e-20 86.3
MS.gene83539.t1 MTR_2g076860 24.479 192 102 1 42 233 72 220 9.56e-14 71.6
MS.gene83539.t1 MTR_0003s0410 41.935 93 53 1 261 353 672 763 1.10e-12 71.6
MS.gene83539.t1 MTR_6g060120 60.000 75 28 2 1 74 1 74 1.38e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 101 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTACGAGAAGCCATTATT+TGG 0.166385 2.2:-565319 MS.gene83539:CDS
AGACAACAAATCTTTAAAAT+TGG 0.231722 2.2:-564474 MS.gene83539:CDS
GGAGGATTAGCAGGTCATTT+TGG 0.239147 2.2:-565284 MS.gene83539:CDS
AACTTGGCATTTGGTTGTTT+TGG 0.251939 2.2:+564414 None:intergenic
AATCTTTAAAATTGGAGATT+TGG 0.253491 2.2:-564466 MS.gene83539:CDS
AGTTGTGACGCTTCCAATTC+AGG 0.261063 2.2:-565839 MS.gene83539:CDS
TAAATGTTTCTCCACTCTTA+TGG 0.272967 2.2:+567776 None:intergenic
TACCCAAGAAGCATTCTTAC+AGG 0.289115 2.2:-567755 MS.gene83539:CDS
AGTGTTTGGTCGTTTCTTCT+TGG 0.293836 2.2:+568455 None:intergenic
CTTGGTGACAACTTGGCATT+TGG 0.298252 2.2:+564405 None:intergenic
GACGCTTCCAATTCAGGAAT+TGG 0.321227 2.2:-565833 MS.gene83539:CDS
TCTCTGAATGATTGTCTTTG+TGG 0.337173 2.2:+568284 None:intergenic
CAAAGACCCGTTCAACAGTT+TGG 0.339906 2.2:+568192 None:intergenic
ATTCCTGTAAGAATGCTTCT+TGG 0.340428 2.2:+567752 None:intergenic
TGTAGCTTTCCTTCAAAATC+AGG 0.348866 2.2:+568239 None:intergenic
TTTGAATATCTCTAAGTGTT+TGG 0.372498 2.2:+568441 None:intergenic
ATCATGGGCTTCCCAAATAA+TGG 0.381536 2.2:+565307 None:intergenic
AACCGCGCCAATTCCTGAAT+TGG 0.382822 2.2:+565826 None:intergenic
CAGTTCAACTCCAACAATAC+TGG 0.388842 2.2:-567824 MS.gene83539:CDS
GGCATAAAATTCTTTATCAT+AGG 0.389535 2.2:+565733 None:intergenic
CCGCTTACAGATTGCATAAA+GGG 0.395776 2.2:-565974 MS.gene83539:intron
CCCGCTTACAGATTGCATAA+AGG 0.395951 2.2:-565975 MS.gene83539:intron
TTTGTGCTTGCTCGGTCCAT+TGG 0.405567 2.2:+565942 None:intergenic
AAATGCACAACAAGCACAAT+TGG 0.413256 2.2:-568375 MS.gene83539:CDS
CGTCTAATGTCCAGTATTGT+TGG 0.417557 2.2:+567814 None:intergenic
TTACAGTTTCTTGTAACTGT+TGG 0.421464 2.2:+568396 None:intergenic
TTCCTGTAAGAATGCTTCTT+GGG 0.424057 2.2:+567753 None:intergenic
TTAAAATTGGAGATTTGGTA+TGG 0.425994 2.2:-564461 MS.gene83539:CDS
TCCGTTCTTACTAAAACATA+AGG 0.427155 2.2:-565564 MS.gene83539:CDS
CAGTATTGTTGGAGTTGAAC+TGG 0.432608 2.2:+567825 None:intergenic
TCTACGAGAAGCCATTATTT+GGG 0.435089 2.2:-565318 MS.gene83539:CDS
AACGTCCGATTGCATGTGTT+GGG 0.436078 2.2:+568349 None:intergenic
ACTATGCAAATGAAAGTCAT+TGG 0.441211 2.2:-565485 MS.gene83539:CDS
TGAAGAAGCATGCTTCCATT+TGG 0.441960 2.2:-568118 MS.gene83539:CDS
ATCCAGATGAGTTCGTTGAT+TGG 0.442139 2.2:-568217 MS.gene83539:CDS
GTTTGGTCGTTTCTTCTTGG+AGG 0.442999 2.2:+568458 None:intergenic
AGCCAATCAACGAACTCATC+TGG 0.446536 2.2:+568215 None:intergenic
TTGGCTCCAAACTGTTGAAC+GGG 0.451354 2.2:-568198 MS.gene83539:CDS
AATGACTTTCATTTGCATAG+TGG 0.452688 2.2:+565487 None:intergenic
TTCGAACACCTGGTCAAAGT+TGG 0.453463 2.2:+565865 None:intergenic
TGCCCTTCCCAACTTTGACC+AGG 0.455420 2.2:-565873 MS.gene83539:CDS
ATCAGCTCTTGGTGACAACT+TGG 0.464395 2.2:+564398 None:intergenic
TTGAAAGGACCATCAGCTCT+TGG 0.469552 2.2:+564387 None:intergenic
TCATTTGCATAGTGGCAAGT+AGG 0.470951 2.2:+565495 None:intergenic
CAACGTCCGATTGCATGTGT+TGG 0.478169 2.2:+568348 None:intergenic
TGTGGTGATTGTTGTGATCA+TGG 0.486935 2.2:-563551 MS.gene83539:CDS
CACTGATTCACAATCCTCTC+AGG 0.487608 2.2:-565402 MS.gene83539:CDS
ACAATCGCTCGTTACCTTGG+TGG 0.488980 2.2:-567870 MS.gene83539:CDS
CATTTGCATAGTGGCAAGTA+GGG 0.490498 2.2:+565496 None:intergenic
TACTGATGTTTATCTGATGA+TGG 0.491367 2.2:+564609 None:intergenic
GCCCATGATGGAGGATTAGC+AGG 0.491823 2.2:-565293 MS.gene83539:CDS
TTGTCCGAGCCTTGCAACAT+TGG 0.495282 2.2:-565709 MS.gene83539:CDS
TCGAACACCTGGTCAAAGTT+GGG 0.496804 2.2:+565866 None:intergenic
TTGTTGCAGATGCTCTTAGC+AGG 0.500657 2.2:-565526 MS.gene83539:CDS
GACCTGCTAATCCTCCATCA+TGG 0.508910 2.2:+565291 None:intergenic
AATCAATGACAATGCTTACA+AGG 0.509061 2.2:-564352 MS.gene83539:intron
CAAACAATCGCTCGTTACCT+TGG 0.510512 2.2:-567873 MS.gene83539:CDS
GACTCCAATGTTGCAAGGCT+CGG 0.513210 2.2:+565705 None:intergenic
AGAAGCATGCTTCCATTTGG+TGG 0.517055 2.2:-568115 MS.gene83539:CDS
AACACTTAGAGATATTCAAA+TGG 0.522436 2.2:-568438 MS.gene83539:CDS
GGAAGCCCAACACATGCAAT+CGG 0.536743 2.2:-568354 MS.gene83539:CDS
ATGTTGCAAGGCTCGGACAA+TGG 0.549135 2.2:+565712 None:intergenic
ACCTGCTAATCCTCCATCAT+GGG 0.552793 2.2:+565292 None:intergenic
AATACACAAACACATTGTAC+AGG 0.555288 2.2:-563522 MS.gene83539:CDS
TCAATCGCAGACATGCCGCT+TGG 0.555509 2.2:-565607 MS.gene83539:CDS
CACAACTTACTTCGAACACC+TGG 0.555960 2.2:+565855 None:intergenic
ATTATTTGGGAAGCCCATGA+TGG 0.557585 2.2:-565305 MS.gene83539:CDS
GAAGTGCGACATTCATGAAA+GGG 0.562630 2.2:-567901 MS.gene83539:CDS
GAAGCATGCTTCCATTTGGT+GGG 0.576938 2.2:-568114 MS.gene83539:CDS
ATTGGCTCCAAACTGTTGAA+CGG 0.580900 2.2:-568199 MS.gene83539:CDS
ACACCTGGTCAAAGTTGGGA+AGG 0.582300 2.2:+565870 None:intergenic
AGAGCACTGAGGAATACATA+AGG 0.585072 2.2:+565340 None:intergenic
TGAAGTGCGACATTCATGAA+AGG 0.588057 2.2:-567902 MS.gene83539:CDS
ATTCAGAGACAACGACATCA+AGG 0.588760 2.2:-568270 MS.gene83539:CDS
AAAACAAAGCGAGCCCGTGA+AGG 0.589611 2.2:-568083 MS.gene83539:CDS
TTTAGTGAAAAGCTCAACAA+TGG 0.590823 2.2:-565773 MS.gene83539:CDS
AAGTTGGGAAGGGCAAGCAC+TGG 0.592094 2.2:+565881 None:intergenic
AAGTTGTCACCAAGAGCTGA+TGG 0.598597 2.2:-564396 MS.gene83539:CDS
CTGAGAGGATTGTGAATCAG+TGG 0.599316 2.2:+565403 None:intergenic
TATTCGTTTAGCCATAAGAG+TGG 0.600070 2.2:-567787 MS.gene83539:CDS
ATTTGGGAAGCCCATGATGG+AGG 0.604783 2.2:-565302 MS.gene83539:CDS
CATTGGATTTGAGACAGTCA+AGG 0.605582 2.2:-565468 MS.gene83539:CDS
CACCTGGTCAAAGTTGGGAA+GGG 0.612641 2.2:+565871 None:intergenic
TTCTTACTAAAACATAAGGC+GGG 0.617806 2.2:-565560 MS.gene83539:CDS
TGCATGAACAAGTTCGCCAA+CGG 0.617808 2.2:-564545 MS.gene83539:CDS
GGCGCGGTTCTATGTCAAGA+AGG 0.618948 2.2:-565812 MS.gene83539:CDS
TTATCTTGATAATAATGAGA+AGG 0.621198 2.2:+568002 None:intergenic
TAAAGGGAGATCAATTCCAA+TGG 0.621858 2.2:-565958 MS.gene83539:CDS
GTTCTTACTAAAACATAAGG+CGG 0.624357 2.2:-565561 MS.gene83539:CDS
CAGGACTACTACAGACATGA+GGG 0.625095 2.2:-565383 MS.gene83539:CDS
GATGATGGAGTCAAGTCTAA+CGG 0.626466 2.2:+564624 None:intergenic
TCAGGACTACTACAGACATG+AGG 0.632763 2.2:-565384 MS.gene83539:CDS
GTAATGACTCCAATGTTGCA+AGG 0.650624 2.2:+565700 None:intergenic
GTCAAGTCTAACGGACTGTG+TGG 0.657876 2.2:+564633 None:intergenic
GTGCGACATTCATGAAAGGG+AGG 0.658783 2.2:-567898 MS.gene83539:CDS
ATAAGAAGAATTCTCAGTGG+AGG 0.665480 2.2:+567725 None:intergenic
TTCCAATTCAGGAATTGGCG+CGG 0.668895 2.2:-565828 MS.gene83539:CDS
CGTCAGTATTTAATCCACCA+AGG 0.673418 2.2:+567856 None:intergenic
ATGTCTGTAGTAGTCCTGAG+AGG 0.696842 2.2:+565388 None:intergenic
GGGATAAGAAGAATTCTCAG+TGG 0.734712 2.2:+567722 None:intergenic
GCTTCTCGTAGAGAGCACTG+AGG 0.826263 2.2:+565329 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTGTACTATTTTGAA+AGG + chr2.2:567611-567630 None:intergenic 15.0%
!!! TATAAAAAATTTCAAGTTCT+AGG + chr2.2:568250-568269 None:intergenic 15.0%
!!! TTAAATTCTTAAGTCATTTT+TGG - chr2.2:567090-567109 MS.gene83539:intron 15.0%
!!! AAGTTTTGTTAATATCAAGA+GGG + chr2.2:568106-568125 None:intergenic 20.0%
!!! TTATCTTGATAATAATGAGA+AGG + chr2.2:563981-564000 None:intergenic 20.0%
! AAATTAGTAAATGGCAAACA+TGG + chr2.2:567899-567918 None:intergenic 25.0%
! AACACTTAGAGATATTCAAA+TGG - chr2.2:563542-563561 MS.gene83539:CDS 25.0%
! AATGGACACAAATTAGTAAA+TGG + chr2.2:567908-567927 None:intergenic 25.0%
! ACTTATTGTTAATAGTAGAG+TGG + chr2.2:567812-567831 None:intergenic 25.0%
! ATCAAATTCTACAAAATTGG+AGG + chr2.2:568318-568337 None:intergenic 25.0%
! ATTGACGAAACTTACAATTT+CGG + chr2.2:568081-568100 None:intergenic 25.0%
! CTTATTTATAGTAATCCTAG+AGG + chr2.2:567950-567969 None:intergenic 25.0%
! GGCATAAAATTCTTTATCAT+AGG + chr2.2:566250-566269 None:intergenic 25.0%
! TATAAAATGAAGCTAATCCA+TGG + chr2.2:565951-565970 None:intergenic 25.0%
! TCTAATAAATCATCAAGTCT+AGG + chr2.2:565463-565482 None:intergenic 25.0%
! TGCATCAAATTCTACAAAAT+TGG + chr2.2:568321-568340 None:intergenic 25.0%
! TTAGTGATTAAAGACACTAA+TGG + chr2.2:565025-565044 None:intergenic 25.0%
! TTTGAATATCTCTAAGTGTT+TGG + chr2.2:563542-563561 None:intergenic 25.0%
!! ATCCAGATTTTCAAAAGTTT+TGG - chr2.2:566550-566569 MS.gene83539:intron 25.0%
!! CGGTAAAAATCTAAAACAAT+GGG - chr2.2:567232-567251 MS.gene83539:intron 25.0%
!! CTTTTATTCACATTGCTAAA+AGG - chr2.2:568390-568409 MS.gene83539:CDS 25.0%
!! TCGGTAAAAATCTAAAACAA+TGG - chr2.2:567231-567250 MS.gene83539:intron 25.0%
!! TTAAAATTGGAGATTTGGTA+TGG - chr2.2:567519-567538 MS.gene83539:intron 25.0%
!!! AAAAAATTTCAAGTTCTAGG+TGG + chr2.2:568247-568266 None:intergenic 25.0%
!!! CTCTAGGATTACTATAAATA+AGG - chr2.2:567948-567967 MS.gene83539:CDS 25.0%
!!! GAAGTTTTGTTAATATCAAG+AGG + chr2.2:568107-568126 None:intergenic 25.0%
!!! GATTAGCTTCATTTTATAGA+AGG - chr2.2:565953-565972 MS.gene83539:CDS 25.0%
!!! TTCCAAAACTTTTGAAAATC+TGG + chr2.2:566555-566574 None:intergenic 25.0%
!!! TTTCAGTCAAAAGTTGTTTT+AGG + chr2.2:566077-566096 None:intergenic 25.0%
AAAAAGCAAGATCAAGACTT+GGG - chr2.2:563920-563939 MS.gene83539:intron 30.0%
AAATCATCAAGTCTAGGTAT+CGG + chr2.2:565457-565476 None:intergenic 30.0%
AATACACAAACACATTGTAC+AGG - chr2.2:568458-568477 MS.gene83539:CDS 30.0%
AATCAATGACAATGCTTACA+AGG - chr2.2:567628-567647 MS.gene83539:intron 30.0%
AATGACTTTCATTTGCATAG+TGG + chr2.2:566496-566515 None:intergenic 30.0%
AATTCAACTAATCAAGCAAC+TGG - chr2.2:567290-567309 MS.gene83539:intron 30.0%
ACTATGCAAATGAAAGTCAT+TGG - chr2.2:566495-566514 MS.gene83539:intron 30.0%
AGCATTTGTTCAATTTCTAC+TGG + chr2.2:565130-565149 None:intergenic 30.0%
ATGAGCTCTTCATCATAAAT+TGG + chr2.2:564509-564528 None:intergenic 30.0%
ATTAACGTTGTGCAATTTCA+TGG + chr2.2:568137-568156 None:intergenic 30.0%
CAAATTGTGAGAATACATGA+AGG + chr2.2:567980-567999 None:intergenic 30.0%
CATGGTAGTTGAAATAGTAA+TGG + chr2.2:567926-567945 None:intergenic 30.0%
CATTACTATTTCAACTACCA+TGG - chr2.2:567924-567943 MS.gene83539:CDS 30.0%
CCACTCTACTATTAACAATA+AGG - chr2.2:567809-567828 MS.gene83539:CDS 30.0%
CCTTATTGTTAATAGTAGAG+TGG + chr2.2:567868-567887 None:intergenic 30.0%
GATTTATTAGATCAGTTGCA+TGG - chr2.2:565472-565491 MS.gene83539:CDS 30.0%
GTTCTTACTAAAACATAAGG+CGG - chr2.2:566419-566438 MS.gene83539:intron 30.0%
TAAATGTTTCTCCACTCTTA+TGG + chr2.2:564207-564226 None:intergenic 30.0%
TACTGATGTTTATCTGATGA+TGG + chr2.2:567374-567393 None:intergenic 30.0%
TAGTGAGAGAGAATTTCTAT+TGG - chr2.2:566739-566758 MS.gene83539:intron 30.0%
TATTCACATTGCTAAAAGGA+TGG - chr2.2:568394-568413 MS.gene83539:CDS 30.0%
TATTGTTAATAGTAGAGTGG+TGG + chr2.2:567809-567828 None:intergenic 30.0%
TCCGTTCTTACTAAAACATA+AGG - chr2.2:566416-566435 MS.gene83539:intron 30.0%
TCTAACTCTTCTTCTTTCTT+AGG + chr2.2:564485-564504 None:intergenic 30.0%
TGACTAACAGAAGAATTTGA+CGG + chr2.2:568173-568192 None:intergenic 30.0%
TGTGATGTTATAATAGACAG+TGG - chr2.2:564650-564669 MS.gene83539:CDS 30.0%
TTAACGTTGTGCAATTTCAT+GGG + chr2.2:568136-568155 None:intergenic 30.0%
TTACAGTTTCTTGTAACTGT+TGG + chr2.2:563587-563606 None:intergenic 30.0%
TTCTTACTAAAACATAAGGC+GGG - chr2.2:566420-566439 MS.gene83539:intron 30.0%
TTGACGAAACTTACAATTTC+GGG + chr2.2:568080-568099 None:intergenic 30.0%
TTTAGTGAAAAGCTCAACAA+TGG - chr2.2:566207-566226 MS.gene83539:intron 30.0%
TTTGTTCAATTTCTACTGGA+AGG + chr2.2:565126-565145 None:intergenic 30.0%
! AAGATCGATCTTTGAAAAGA+TGG + chr2.2:565503-565522 None:intergenic 30.0%
! AATTTTGCTGAATTATCCGT+TGG + chr2.2:567454-567473 None:intergenic 30.0%
! ATTCTATAAGCTGGTCTATT+AGG + chr2.2:565253-565272 None:intergenic 30.0%
! GCATATAAAAACCAGTGTTT+TGG + chr2.2:566836-566855 None:intergenic 30.0%
! GTAGATATTCCTGATTTTGA+AGG - chr2.2:563732-563751 MS.gene83539:intron 30.0%
! TGTGGATAGATTTTCAAAGA+TGG - chr2.2:566953-566972 MS.gene83539:intron 30.0%
! TGTTTCAAATGTCAAGGTTT+TGG - chr2.2:564365-564384 MS.gene83539:CDS 30.0%
! TTTTACTCCATCTTTGACAA+AGG + chr2.2:564945-564964 None:intergenic 30.0%
! TTTTAGATTTTCCCACCAAA+TGG + chr2.2:563880-563899 None:intergenic 30.0%
! TTTTCACTAAAGAAGGCTAT+AGG + chr2.2:566198-566217 None:intergenic 30.0%
!! AGAAGTATCAAGATCAAGTT+TGG - chr2.2:564822-564841 MS.gene83539:intron 30.0%
!!! AAAACTTTTTTGTGCTTGCT+CGG + chr2.2:566049-566068 None:intergenic 30.0%
!!! GCCTTATGTTTTAGTAAGAA+CGG + chr2.2:566420-566439 None:intergenic 30.0%
!!! TTGTTTTTATCAAGTCCACT+CGG + chr2.2:564989-565008 None:intergenic 30.0%
AAAACAATGGGATCTCATCT+TGG - chr2.2:567244-567263 MS.gene83539:intron 35.0%
AAACTACAATGGCTCAACAA+AGG - chr2.2:564749-564768 MS.gene83539:intron 35.0%
AAATGCACAACAAGCACAAT+TGG - chr2.2:563605-563624 MS.gene83539:intron 35.0%
AACATCTCTATCAGAAGTGA+TGG + chr2.2:567072-567091 None:intergenic 35.0%
AAGGAAATTGTTCGTCTTCA+TGG - chr2.2:567035-567054 MS.gene83539:intron 35.0%
ACATAAGTGCAAAACTTCAG+GGG + chr2.2:568216-568235 None:intergenic 35.0%
ACTACAAACTTGCCAATGAA+TGG + chr2.2:565679-565698 None:intergenic 35.0%
ATAAGAAGAATTCTCAGTGG+AGG + chr2.2:564258-564277 None:intergenic 35.0%
ATAGGATAAAGCTCATGGTT+TGG + chr2.2:565078-565097 None:intergenic 35.0%
ATCTTGATACTTCTGACCAA+TGG + chr2.2:564816-564835 None:intergenic 35.0%
ATTCATTGGCAAGTTTGTAG+TGG - chr2.2:565678-565697 MS.gene83539:CDS 35.0%
ATTCCTGTAAGAATGCTTCT+TGG + chr2.2:564231-564250 None:intergenic 35.0%
CACATAAGTGCAAAACTTCA+GGG + chr2.2:568217-568236 None:intergenic 35.0%
CATGATGTTAGAAGTTTCCA+TGG - chr2.2:565931-565950 MS.gene83539:CDS 35.0%
CCAGAGATGGTTTATATGAA+TGG - chr2.2:565584-565603 MS.gene83539:CDS 35.0%
CCATTCATATAAACCATCTC+TGG + chr2.2:565587-565606 None:intergenic 35.0%
CTAACATCATGAATTGACTG+TGG + chr2.2:565922-565941 None:intergenic 35.0%
CTCATCCTTACAAACTACAA+TGG - chr2.2:564738-564757 MS.gene83539:intron 35.0%
GAAAAAGCAAGATCAAGACT+TGG - chr2.2:563919-563938 MS.gene83539:intron 35.0%
GAACAATAGGATAAAGCTCA+TGG + chr2.2:565083-565102 None:intergenic 35.0%
GACCAATGGAAAAATTCACA+AGG + chr2.2:564802-564821 None:intergenic 35.0%
GATACCATCAAATCAGGTTT+AGG - chr2.2:565530-565549 MS.gene83539:CDS 35.0%
GATTAAAGACACTAATGGCT+TGG + chr2.2:565020-565039 None:intergenic 35.0%
GTAATTTCAGCATGTTCTTG+TGG + chr2.2:565280-565299 None:intergenic 35.0%
GTATAAGTCAGCAACTTGAA+CGG + chr2.2:567012-567031 None:intergenic 35.0%
GTGAGAATACATGAAGGAAA+TGG + chr2.2:567974-567993 None:intergenic 35.0%
TAAAGGGAGATCAATTCCAA+TGG - chr2.2:566022-566041 MS.gene83539:intron 35.0%
TAACAGAAGAATTTGACGGA+GGG + chr2.2:568169-568188 None:intergenic 35.0%
TAACGTTGTGCAATTTCATG+GGG + chr2.2:568135-568154 None:intergenic 35.0%
TATCGGAAATCGATACTTGA+TGG + chr2.2:565440-565459 None:intergenic 35.0%
TATTCGTTTAGCCATAAGAG+TGG - chr2.2:564193-564212 MS.gene83539:intron 35.0%
TCATGAATTGACTGTGGAAT+AGG + chr2.2:565916-565935 None:intergenic 35.0%
TCTACGAGAAGCCATTATTT+GGG - chr2.2:566662-566681 MS.gene83539:intron 35.0%
TCTCTGAATGATTGTCTTTG+TGG + chr2.2:563699-563718 None:intergenic 35.0%
TGACGAAACTTACAATTTCG+GGG + chr2.2:568079-568098 None:intergenic 35.0%
TGTAGCTTTCCTTCAAAATC+AGG + chr2.2:563744-563763 None:intergenic 35.0%
TTAATCTGTATCATTCTCCC+CGG + chr2.2:567762-567781 None:intergenic 35.0%
TTCCTGTAAGAATGCTTCTT+GGG + chr2.2:564230-564249 None:intergenic 35.0%
TTGGGTTTATTTACTGTGGT+GGG + chr2.2:564335-564354 None:intergenic 35.0%
TTGTAAAAACTCACTCCAAG+CGG + chr2.2:566391-566410 None:intergenic 35.0%
! AAATGTGGTATCGAACTACA+TGG - chr2.2:564682-564701 MS.gene83539:intron 35.0%
! AACCTTGACATTTGAAACAC+TGG + chr2.2:564364-564383 None:intergenic 35.0%
! AACTGGAAAATGTCCTTTTG+AGG - chr2.2:567307-567326 MS.gene83539:intron 35.0%
! AACTTGGCATTTGGTTGTTT+TGG + chr2.2:567569-567588 None:intergenic 35.0%
! ACCTTGACATTTGAAACACT+GGG + chr2.2:564363-564382 None:intergenic 35.0%
! ACTGCATTTAAAACCAGAGA+TGG - chr2.2:565571-565590 MS.gene83539:CDS 35.0%
! ATCGATCTTTGAAAAGATGG+TGG + chr2.2:565500-565519 None:intergenic 35.0%
! CAGACAAGTTTTTCTGACAA+AGG + chr2.2:564022-564041 None:intergenic 35.0%
! CATGAGGGATTTTTGTTCAA+AGG - chr2.2:566612-566631 MS.gene83539:intron 35.0%
! CATTGTAGTTTGTAAGGATG+AGG + chr2.2:564740-564759 None:intergenic 35.0%
! CTATCAGAAGTGATGGTTTT+TGG + chr2.2:567065-567084 None:intergenic 35.0%
! CTGCATTTTCTTCGAACAAT+AGG + chr2.2:565096-565115 None:intergenic 35.0%
! GAAGCTGTTAACAGGATTTT+GGG - chr2.2:567188-567207 MS.gene83539:intron 35.0%
! GGATGGAAATCTTTTCTATG+TGG - chr2.2:568411-568430 MS.gene83539:CDS 35.0%
! GTTGAGCTTTTCACTAAAGA+AGG + chr2.2:566205-566224 None:intergenic 35.0%
! TCTGCGATTGATCTTTTGTT+GGG + chr2.2:566364-566383 None:intergenic 35.0%
! TGAAGCTGTTAACAGGATTT+TGG - chr2.2:567187-567206 MS.gene83539:intron 35.0%
! TGCCTTGTGAATTTTTCCAT+TGG - chr2.2:564797-564816 MS.gene83539:intron 35.0%
! TTGAGCCATTGTAGTTTGTA+AGG + chr2.2:564746-564765 None:intergenic 35.0%
! TTTGGGTTTATTTACTGTGG+TGG + chr2.2:564336-564355 None:intergenic 35.0%
!! AGAAGGTTTTGTAGAAGTAC+TGG + chr2.2:564306-564325 None:intergenic 35.0%
!! AGCTTATGAAGAAGTTGATG+AGG - chr2.2:564442-564461 MS.gene83539:CDS 35.0%
!! AGCTTTGGGTTTATTTACTG+TGG + chr2.2:564339-564358 None:intergenic 35.0%
!! AGTTGCTGACTTATACTTCA+AGG - chr2.2:567016-567035 MS.gene83539:intron 35.0%
!! ATGAACTTGCTATAAACTCG+AGG - chr2.2:567720-567739 MS.gene83539:CDS 35.0%
!! ATTTTAGTCCCCAAAAAGGA+TGG - chr2.2:565370-565389 MS.gene83539:CDS 35.0%
!! ATTTTTGGAGAACCTTATGG+AGG - chr2.2:567105-567124 MS.gene83539:intron 35.0%
!! CATGCTATTGACTTTATTCC+TGG - chr2.2:565217-565236 MS.gene83539:intron 35.0%
!! TGCAATTTTAGTCCCCAAAA+AGG - chr2.2:565366-565385 MS.gene83539:CDS 35.0%
!! TTTTTGGGGACTAAAATTGC+AGG + chr2.2:565367-565386 None:intergenic 35.0%
!!! CATCATTAGTCTTTTGGCAT+GGG + chr2.2:566989-567008 None:intergenic 35.0%
!!! CTGATCGTTATTTGTTTTGC+GGG + chr2.2:564282-564301 None:intergenic 35.0%
!!! GAAGGTTTTGTAGAAGTACT+GGG + chr2.2:564305-564324 None:intergenic 35.0%
!!! GCTGATCGTTATTTGTTTTG+CGG + chr2.2:564283-564302 None:intergenic 35.0%
!!! GTCATTTTTGGAGAACCTTA+TGG - chr2.2:567102-567121 MS.gene83539:intron 35.0%
!!! TGATCGTTATTTGTTTTGCG+GGG + chr2.2:564281-564300 None:intergenic 35.0%
!!! TGATCTTGCTTTTTCCTTCA+CGG + chr2.2:563914-563933 None:intergenic 35.0%
AAAATTGCAGGAACAGCACA+AGG + chr2.2:565355-565374 None:intergenic 40.0%
AAATTGCAGGAACAGCACAA+GGG + chr2.2:565354-565373 None:intergenic 40.0%
AACAGAAGAATTTGACGGAG+GGG + chr2.2:568168-568187 None:intergenic 40.0%
AAGATGTCGAGTATGCCATT+TGG - chr2.2:566797-566816 MS.gene83539:intron 40.0%
ACCCAGTGTTTCAAATGTCA+AGG - chr2.2:564359-564378 MS.gene83539:CDS 40.0%
ACCTACTCCTTTGTCAAAGA+TGG - chr2.2:564935-564954 MS.gene83539:intron 40.0%
ACGAAACTTACAATTTCGGG+GGG + chr2.2:568077-568096 None:intergenic 40.0%
ACTTTGTGCTTGGATTACCT+CGG - chr2.2:566898-566917 MS.gene83539:intron 40.0%
AGAACCATCACCATCATCAA+AGG - chr2.2:564416-564435 MS.gene83539:CDS 40.0%
AGAACCTTATGGAGGAAGAT+GGG - chr2.2:567113-567132 MS.gene83539:intron 40.0%
AGAAGATGACATGCATCCAT+TGG + chr2.2:564860-564879 None:intergenic 40.0%
AGTGTTTGGTCGTTTCTTCT+TGG + chr2.2:563528-563547 None:intergenic 40.0%
ATAAGCTTCGCCTTTGATGA+TGG + chr2.2:564429-564448 None:intergenic 40.0%
ATCATGGGCTTCCCAAATAA+TGG + chr2.2:566676-566695 None:intergenic 40.0%
ATCCAGATATGGTGAAAGGT+CGG + chr2.2:567699-567718 None:intergenic 40.0%
ATCCAGATGAGTTCGTTGAT+TGG - chr2.2:563763-563782 MS.gene83539:intron 40.0%
ATTATTTGGGAAGCCCATGA+TGG - chr2.2:566675-566694 MS.gene83539:intron 40.0%
ATTCAGAGACAACGACATCA+AGG - chr2.2:563710-563729 MS.gene83539:intron 40.0%
CAACAAAGGTAGTGAAGTGA+AGG - chr2.2:564763-564782 MS.gene83539:intron 40.0%
CAAGTACTTCGACCATTCAT+TGG - chr2.2:565664-565683 MS.gene83539:CDS 40.0%
CAGTATTGTTGGAGTTGAAC+TGG + chr2.2:564158-564177 None:intergenic 40.0%
CAGTGGTAGTTGTGAAAATG+TGG - chr2.2:564667-564686 MS.gene83539:intron 40.0%
CAGTTCAACTCCAACAATAC+TGG - chr2.2:564156-564175 MS.gene83539:intron 40.0%
CATAAGTGCAAAACTTCAGG+GGG + chr2.2:568215-568234 None:intergenic 40.0%
CATCATCCAGATATGGTGAA+AGG + chr2.2:567703-567722 None:intergenic 40.0%
CATTTGCATAGTGGCAAGTA+GGG + chr2.2:566487-566506 None:intergenic 40.0%
CCCTTTATGCAATCTGTAAG+CGG + chr2.2:566009-566028 None:intergenic 40.0%
CCGCTTACAGATTGCATAAA+GGG - chr2.2:566006-566025 MS.gene83539:intron 40.0%
CCTTTATGCAATCTGTAAGC+GGG + chr2.2:566008-566027 None:intergenic 40.0%
CGTCAGTATTTAATCCACCA+AGG + chr2.2:564127-564146 None:intergenic 40.0%
CGTCTAATGTCCAGTATTGT+TGG + chr2.2:564169-564188 None:intergenic 40.0%
CTAACAGAAGAATTTGACGG+AGG + chr2.2:568170-568189 None:intergenic 40.0%
CTCATTTGAGAGTTAGAGAG+TGG - chr2.2:568024-568043 MS.gene83539:CDS 40.0%
CTCTACGAGAAGCCATTATT+TGG - chr2.2:566661-566680 MS.gene83539:intron 40.0%
CTTGAGCTGACATTGTATGT+AGG + chr2.2:564571-564590 None:intergenic 40.0%
CTTGATCTACAGCAAACACA+AGG - chr2.2:565717-565736 MS.gene83539:CDS 40.0%
CTTTATGCAATCTGTAAGCG+GGG + chr2.2:566007-566026 None:intergenic 40.0%
GAAGTGCGACATTCATGAAA+GGG - chr2.2:564079-564098 MS.gene83539:intron 40.0%
GAAGTGGATACCATCAAATC+AGG - chr2.2:565524-565543 MS.gene83539:CDS 40.0%
GACAAACTGAAGCTGTTAAC+AGG - chr2.2:567180-567199 MS.gene83539:intron 40.0%
GACGAAACTTACAATTTCGG+GGG + chr2.2:568078-568097 None:intergenic 40.0%
GACTCAATTCAAAGAAGCTG+TGG - chr2.2:565045-565064 MS.gene83539:intron 40.0%
GCAAGTTCATCATCCAGATA+TGG + chr2.2:567710-567729 None:intergenic 40.0%
GCACATAAGTGCAAAACTTC+AGG + chr2.2:568218-568237 None:intergenic 40.0%
GGGATAAGAAGAATTCTCAG+TGG + chr2.2:564261-564280 None:intergenic 40.0%
GGTTACATAATCACAGCTGA+AGG - chr2.2:565847-565866 MS.gene83539:CDS 40.0%
GTAATGACTCCAATGTTGCA+AGG + chr2.2:566283-566302 None:intergenic 40.0%
TAATCTGTATCATTCTCCCC+GGG + chr2.2:567761-567780 None:intergenic 40.0%
TATAGTAATCCTAGAGGCCA+TGG + chr2.2:567944-567963 None:intergenic 40.0%
TCAAAGATCGATCTTCGAAG+TGG - chr2.2:565508-565527 MS.gene83539:CDS 40.0%
TCATTTGCATAGTGGCAAGT+AGG + chr2.2:566488-566507 None:intergenic 40.0%
TCCATCTTTGACAAAGGAGT+AGG + chr2.2:564939-564958 None:intergenic 40.0%
TGAAGTGCGACATTCATGAA+AGG - chr2.2:564078-564097 MS.gene83539:intron 40.0%
TGTGGACTCATTCTATAAGC+TGG + chr2.2:565262-565281 None:intergenic 40.0%
TGTGGTGATTGTTGTGATCA+TGG - chr2.2:568429-568448 MS.gene83539:CDS 40.0%
TTACAATTTCGGGGGGTAAT+TGG + chr2.2:568070-568089 None:intergenic 40.0%
TTCAGTTTGTCCATCTGTCT+GGG + chr2.2:567171-567190 None:intergenic 40.0%
TTGAAACACTGGGTAGCTTT+GGG + chr2.2:564353-564372 None:intergenic 40.0%
TTGATTCATGAGACGCATGA+AGG + chr2.2:565647-565666 None:intergenic 40.0%
TTGGTGTGATGTTGTTCCAA+TGG - chr2.2:564841-564860 MS.gene83539:intron 40.0%
TTTGACAAAGGAGTAGGTGT+TGG + chr2.2:564933-564952 None:intergenic 40.0%
! AAATGGCAAACATGGCTTGT+TGG + chr2.2:567891-567910 None:intergenic 40.0%
! AACCAACGAAGTTACTTTCC+TGG - chr2.2:565825-565844 MS.gene83539:CDS 40.0%
! AACCTACTTCGGAGCTTTAT+CGG - chr2.2:567212-567231 MS.gene83539:intron 40.0%
! ACCAACGAAGTTACTTTCCT+GGG - chr2.2:565826-565845 MS.gene83539:CDS 40.0%
! AGTAACTTCGTTGGTTAGGA+AGG + chr2.2:565821-565840 None:intergenic 40.0%
! AGTGGTGGAATATGAGGTAA+GGG + chr2.2:567794-567813 None:intergenic 40.0%
! ATCACAAACTTTTCCAGCAG+TGG + chr2.2:564636-564655 None:intergenic 40.0%
! ATTGGCTCCAAACTGTTGAA+CGG - chr2.2:563781-563800 MS.gene83539:intron 40.0%
! CATTGGATTTGAGACAGTCA+AGG - chr2.2:566512-566531 MS.gene83539:intron 40.0%
! GGAAAGTAACTTCGTTGGTT+AGG + chr2.2:565825-565844 None:intergenic 40.0%
! GGAGCATTAGATAACCCAAA+GGG + chr2.2:565619-565638 None:intergenic 40.0%
! GTCTGCGATTGATCTTTTGT+TGG + chr2.2:566365-566384 None:intergenic 40.0%
! TAGACGTCTCTTTCAAGTCT+TGG + chr2.2:566765-566784 None:intergenic 40.0%
! TAGTAGAGTGGTGGAATATG+AGG + chr2.2:567800-567819 None:intergenic 40.0%
! TGAAGAAGCATGCTTCCATT+TGG - chr2.2:563862-563881 MS.gene83539:intron 40.0%
! TGGAGCATTAGATAACCCAA+AGG + chr2.2:565620-565639 None:intergenic 40.0%
! TTAGAGAGTGGATTCTCTCT+TGG - chr2.2:568036-568055 MS.gene83539:CDS 40.0%
! TTTGAAACACTGGGTAGCTT+TGG + chr2.2:564354-564373 None:intergenic 40.0%
! TTTTTATCAAGTCCACTCGG+TGG + chr2.2:564986-565005 None:intergenic 40.0%
!! AGAGCACTGAGGAATACATA+AGG + chr2.2:566643-566662 None:intergenic 40.0%
!! GATGATGGAGTCAAGTCTAA+CGG + chr2.2:567359-567378 None:intergenic 40.0%
!! GGATTTTGGGAAACCTACTT+CGG - chr2.2:567201-567220 MS.gene83539:intron 40.0%
!! TACCCAAGAAGCATTCTTAC+AGG - chr2.2:564225-564244 MS.gene83539:intron 40.0%
!!! AAAACCAGTGTTTTGGCCTT+TGG + chr2.2:566829-566848 None:intergenic 40.0%
!!! GAACGGCATCATTAGTCTTT+TGG + chr2.2:566995-567014 None:intergenic 40.0%
!!! GATCTTGCTTTTTCCTTCAC+GGG + chr2.2:563913-563932 None:intergenic 40.0%
!!! GCATCATTAGTCTTTTGGCA+TGG + chr2.2:566990-567009 None:intergenic 40.0%
!!! TGTCCTTTTGAGGTAGCATA+CGG - chr2.2:567317-567336 MS.gene83539:intron 40.0%
AAAATTGGAGGCAAGATGCG+TGG + chr2.2:568306-568325 None:intergenic 45.0%
AAATTGGAGGCAAGATGCGT+GGG + chr2.2:568305-568324 None:intergenic 45.0%
AACGTCCGATTGCATGTGTT+GGG + chr2.2:563634-563653 None:intergenic 45.0%
AAGTTGTCACCAAGAGCTGA+TGG - chr2.2:567584-567603 MS.gene83539:intron 45.0%
AATCCTTGTGGAACAGCTTC+TGG + chr2.2:565175-565194 None:intergenic 45.0%
AATGGACAGTGATGCCCTTT+GGG - chr2.2:565602-565621 MS.gene83539:CDS 45.0%
ACAGAAGAATTTGACGGAGG+GGG + chr2.2:568167-568186 None:intergenic 45.0%
ACAGCTTCTGGTACAACATC+TGG + chr2.2:565163-565182 None:intergenic 45.0%
ACCCAGGAAAGTAACTTCGT+TGG + chr2.2:565830-565849 None:intergenic 45.0%
ACCTGCTAATCCTCCATCAT+GGG + chr2.2:566691-566710 None:intergenic 45.0%
ACCTTGGGAAGATGTTAGCA+TGG - chr2.2:566875-566894 MS.gene83539:intron 45.0%
AGCCAATCAACGAACTCATC+TGG + chr2.2:563768-563787 None:intergenic 45.0%
AGGTTGAAGCCATCAACAGT+TGG - chr2.2:565890-565909 MS.gene83539:CDS 45.0%
AGTACCCATCTTCCTCCATA+AGG + chr2.2:567120-567139 None:intergenic 45.0%
AGTTGTGACGCTTCCAATTC+AGG - chr2.2:566141-566160 MS.gene83539:intron 45.0%
ATGAGGTAAGGGATGATGCA+AGG + chr2.2:567783-567802 None:intergenic 45.0%
ATGTCTGTAGTAGTCCTGAG+AGG + chr2.2:566595-566614 None:intergenic 45.0%
CAAACAATCGCTCGTTACCT+TGG - chr2.2:564107-564126 MS.gene83539:intron 45.0%
CAAAGACCCGTTCAACAGTT+TGG + chr2.2:563791-563810 None:intergenic 45.0%
CACAACTTACTTCGAACACC+TGG + chr2.2:566128-566147 None:intergenic 45.0%
CAGCTGTGATTATGTAACCC+AGG + chr2.2:565846-565865 None:intergenic 45.0%
CAGCTTCTGGTACAACATCT+GGG + chr2.2:565162-565181 None:intergenic 45.0%
CAGGACTACTACAGACATGA+GGG - chr2.2:566597-566616 MS.gene83539:intron 45.0%
CATCAAATCAGGTTTAGGCC+AGG - chr2.2:565535-565554 MS.gene83539:CDS 45.0%
CCCGCTTACAGATTGCATAA+AGG - chr2.2:566005-566024 MS.gene83539:intron 45.0%
CTACCATCACAGAATCCTTC+TGG + chr2.2:566932-566951 None:intergenic 45.0%
CTATTAGGAATGACAGCTCC+AGG + chr2.2:565238-565257 None:intergenic 45.0%
CTGAGAGGATTGTGAATCAG+TGG + chr2.2:566580-566599 None:intergenic 45.0%
CTTCAGTTTGTCCATCTGTC+TGG + chr2.2:567172-567191 None:intergenic 45.0%
GAAGCATGCTTCCATTTGGT+GGG - chr2.2:563866-563885 MS.gene83539:intron 45.0%
GACGCTTCCAATTCAGGAAT+TGG - chr2.2:566147-566166 MS.gene83539:intron 45.0%
GAGAACCTTATGGAGGAAGA+TGG - chr2.2:567112-567131 MS.gene83539:intron 45.0%
GATCTACAGCAAACACAAGG+AGG - chr2.2:565720-565739 MS.gene83539:CDS 45.0%
GATGCATGTCATCTTCTCCT+TGG - chr2.2:564863-564882 MS.gene83539:intron 45.0%
GCATGTTGAATGTCTCGCAT+TGG + chr2.2:565202-565221 None:intergenic 45.0%
GCTTACAAGGTAGAATTGCC+AGG - chr2.2:567641-567660 MS.gene83539:intron 45.0%
GGATGAGGATGACTTTGTGT+TGG + chr2.2:564725-564744 None:intergenic 45.0%
GGATTCTGTGATGGTAGTTG+TGG - chr2.2:566935-566954 MS.gene83539:intron 45.0%
GTAGAATTGCCAGGAACCTA+TGG - chr2.2:567650-567669 MS.gene83539:intron 45.0%
GTCAAGTCGAAGAATTGCTG+AGG - chr2.2:565302-565321 MS.gene83539:CDS 45.0%
GTCGAAGAATTGCTGAGGAA+AGG - chr2.2:565307-565326 MS.gene83539:CDS 45.0%
GTTAGCATGGACTTTGTGCT+TGG - chr2.2:566888-566907 MS.gene83539:intron 45.0%
GTTCCGTATGCTACCTCAAA+AGG + chr2.2:567323-567342 None:intergenic 45.0%
GTTTGGTCGTTTCTTCTTGG+AGG + chr2.2:563525-563544 None:intergenic 45.0%
TACCGATAAAGCTCCGAAGT+AGG + chr2.2:567217-567236 None:intergenic 45.0%
TCAGGACTACTACAGACATG+AGG - chr2.2:566596-566615 MS.gene83539:intron 45.0%
TCAGTTTGTCCATCTGTCTG+GGG + chr2.2:567170-567189 None:intergenic 45.0%
TCCATGCTAACATCTTCCCA+AGG + chr2.2:566879-566898 None:intergenic 45.0%
TCGAACACCTGGTCAAAGTT+GGG + chr2.2:566117-566136 None:intergenic 45.0%
TGAAAGGTCGGCAACATTGA+AGG + chr2.2:567687-567706 None:intergenic 45.0%
TGCATGAACAAGTTCGCCAA+CGG - chr2.2:567435-567454 MS.gene83539:intron 45.0%
TGGAATAGGCCAACTGTTGA+TGG + chr2.2:565902-565921 None:intergenic 45.0%
TGTTGAATGTCTCGCATTGG+CGG + chr2.2:565199-565218 None:intergenic 45.0%
TTAACTCCATTACCACCGAG+TGG - chr2.2:564971-564990 MS.gene83539:intron 45.0%
TTCCAATTCAGGAATTGGCG+CGG - chr2.2:566152-566171 MS.gene83539:intron 45.0%
TTCGAACACCTGGTCAAAGT+TGG + chr2.2:566118-566137 None:intergenic 45.0%
TTGAAAGGACCATCAGCTCT+TGG + chr2.2:567596-567615 None:intergenic 45.0%
TTGGCTCCAAACTGTTGAAC+GGG - chr2.2:563782-563801 MS.gene83539:intron 45.0%
TTGTTGCAGATGCTCTTAGC+AGG - chr2.2:566454-566473 MS.gene83539:intron 45.0%
TTTCAACTACCATGGCCTCT+AGG - chr2.2:567932-567951 MS.gene83539:CDS 45.0%
! AGAAGCATGCTTCCATTTGG+TGG - chr2.2:563865-563884 MS.gene83539:intron 45.0%
! ATCAGCTCTTGGTGACAACT+TGG + chr2.2:567585-567604 None:intergenic 45.0%
! CTCCAGCTTCCATCCTTTTT+GGG + chr2.2:565382-565401 None:intergenic 45.0%
! CTGGCCTAAACCTGATTTGA+TGG + chr2.2:565537-565556 None:intergenic 45.0%
! CTTGGTGACAACTTGGCATT+TGG + chr2.2:567578-567597 None:intergenic 45.0%
! GAGTGGTGGAATATGAGGTA+AGG + chr2.2:567795-567814 None:intergenic 45.0%
! TCCAGCTTCCATCCTTTTTG+GGG + chr2.2:565381-565400 None:intergenic 45.0%
! TCGAGTATGCCATTTGGCAA+AGG - chr2.2:566803-566822 MS.gene83539:intron 45.0%
! TCTCCAGCTTCCATCCTTTT+TGG + chr2.2:565383-565402 None:intergenic 45.0%
! TGTCAGCTCAAGAAGAGCAT+TGG - chr2.2:564579-564598 MS.gene83539:CDS 45.0%
!! ACTGTGGTGGGTTTAAGAGA+AGG + chr2.2:564323-564342 None:intergenic 45.0%
!! ATGAGACGCATGAAGGTACT+TGG + chr2.2:565640-565659 None:intergenic 45.0%
!! ATGGTGATGGTTCTTCGTGT+TGG + chr2.2:564410-564429 None:intergenic 45.0%
!! CACTGATTCACAATCCTCTC+AGG - chr2.2:566578-566597 MS.gene83539:intron 45.0%
!! CTCAAGAAGAGCATTGGTTG+AGG - chr2.2:564585-564604 MS.gene83539:CDS 45.0%
!! GGAGGATTAGCAGGTCATTT+TGG - chr2.2:566696-566715 MS.gene83539:intron 45.0%
!! TATTCGAGTTGACTCCAGCA+AGG - chr2.2:565870-565889 MS.gene83539:CDS 45.0%
!! TTCGCCTTTGATGATGGTGA+TGG + chr2.2:564423-564442 None:intergenic 45.0%
AAAACAAAGCGAGCCCGTGA+AGG - chr2.2:563897-563916 MS.gene83539:intron 50.0%
AACCGCGCCAATTCCTGAAT+TGG + chr2.2:566157-566176 None:intergenic 50.0%
AAGGCCAAAGGCCAAAACAC+TGG - chr2.2:566822-566841 MS.gene83539:intron 50.0%
ACAATCGCTCGTTACCTTGG+TGG - chr2.2:564110-564129 MS.gene83539:intron 50.0%
ACACCTGGTCAAAGTTGGGA+AGG + chr2.2:566113-566132 None:intergenic 50.0%
ACGCCAGAAGGATTCTGTGA+TGG - chr2.2:566926-566945 MS.gene83539:intron 50.0%
AGGACGAGTTCTGTTCAACC+CGG - chr2.2:567740-567759 MS.gene83539:CDS 50.0%
ATCTTCTCCTTGGAAGACCC+TGG - chr2.2:564873-564892 MS.gene83539:intron 50.0%
ATGTTGCAAGGCTCGGACAA+TGG + chr2.2:566271-566290 None:intergenic 50.0%
ATTTGGGAAGCCCATGATGG+AGG - chr2.2:566678-566697 MS.gene83539:intron 50.0%
CAACGTCCGATTGCATGTGT+TGG + chr2.2:563635-563654 None:intergenic 50.0%
CACCTGGTCAAAGTTGGGAA+GGG + chr2.2:566112-566131 None:intergenic 50.0%
CAGTTTGTCCATCTGTCTGG+GGG + chr2.2:567169-567188 None:intergenic 50.0%
GAAGGTTGCTGAGACACCAT+AGG + chr2.2:567669-567688 None:intergenic 50.0%
GAATGGACAGTGATGCCCTT+TGG - chr2.2:565601-565620 MS.gene83539:CDS 50.0%
GACCTGCTAATCCTCCATCA+TGG + chr2.2:566692-566711 None:intergenic 50.0%
GACTCCAATGTTGCAAGGCT+CGG + chr2.2:566278-566297 None:intergenic 50.0%
GAGCTCATTGTTGCTGACCA+TGG - chr2.2:564521-564540 MS.gene83539:CDS 50.0%
GCAGTCTTCCATTCATCTCC+TGG + chr2.2:565556-565575 None:intergenic 50.0%
GGAAGCCCAACACATGCAAT+CGG - chr2.2:563626-563645 MS.gene83539:intron 50.0%
GGTAAGGGATGATGCAAGGT+AGG + chr2.2:567835-567854 None:intergenic 50.0%
GGTTTAGGCCAGGAGATGAA+TGG - chr2.2:565545-565564 MS.gene83539:CDS 50.0%
GTACCAGAAGCTGTTCCACA+AGG - chr2.2:565169-565188 MS.gene83539:intron 50.0%
GTGCGACATTCATGAAAGGG+AGG - chr2.2:564082-564101 MS.gene83539:intron 50.0%
TCCCCAAAAAGGATGGAAGC+TGG - chr2.2:565377-565396 MS.gene83539:CDS 50.0%
TGCCGACCTTTCACCATATC+TGG - chr2.2:567694-567713 MS.gene83539:intron 50.0%
TTGTCCGAGCCTTGCAACAT+TGG - chr2.2:566271-566290 MS.gene83539:intron 50.0%
TTTGTGCTTGCTCGGTCCAT+TGG + chr2.2:566041-566060 None:intergenic 50.0%
! ACATCTTCCCAAGGTGCTTC+TGG + chr2.2:566870-566889 None:intergenic 50.0%
! TCAAGTCCACTCGGTGGTAA+TGG + chr2.2:564980-564999 None:intergenic 50.0%
! TGCCATTTGGCAAAGGCCAA+AGG - chr2.2:566810-566829 MS.gene83539:intron 50.0%
!! GTCAAGTCTAACGGACTGTG+TGG + chr2.2:567350-567369 None:intergenic 50.0%
!! GTTGATGGCTTCAACCTTGC+TGG + chr2.2:565887-565906 None:intergenic 50.0%
!!! GGAGGAGGCATTTTGAGTCA+AGG + chr2.2:568284-568303 None:intergenic 50.0%
AAGTTGGGAAGGGCAAGCAC+TGG + chr2.2:566102-566121 None:intergenic 55.0%
AGCACGACGATCGTATTGCC+AGG + chr2.2:564894-564913 None:intergenic 55.0%
CAGCAGTGGTGCAACGAGTA+TGG + chr2.2:564622-564641 None:intergenic 55.0%
CATACTCGTTGCACCACTGC+TGG - chr2.2:564620-564639 MS.gene83539:CDS 55.0%
CGTATTGCCAGGGTCTTCCA+AGG + chr2.2:564883-564902 None:intergenic 55.0%
GACGAGTTCTGTTCAACCCG+GGG - chr2.2:567742-567761 MS.gene83539:CDS 55.0%
GCACGACGATCGTATTGCCA+GGG + chr2.2:564893-564912 None:intergenic 55.0%
GCTGAGACACCATAGGTTCC+TGG + chr2.2:567662-567681 None:intergenic 55.0%
GGACGAGTTCTGTTCAACCC+GGG - chr2.2:567741-567760 MS.gene83539:CDS 55.0%
GGCGCGGTTCTATGTCAAGA+AGG - chr2.2:566168-566187 MS.gene83539:intron 55.0%
TCAATCGCAGACATGCCGCT+TGG - chr2.2:566373-566392 MS.gene83539:intron 55.0%
TGATCACCAGAGACTCGCCA+TGG + chr2.2:564541-564560 None:intergenic 55.0%
TGCCCTTCCCAACTTTGACC+AGG - chr2.2:566107-566126 MS.gene83539:intron 55.0%
! GCCCATGATGGAGGATTAGC+AGG - chr2.2:566687-566706 MS.gene83539:intron 55.0%
! GGCCTTTGGCCTTTGCCAAA+TGG + chr2.2:566815-566834 None:intergenic 55.0%
!! CCCAAGGTGCTTCTGGAACA+GGG + chr2.2:566863-566882 None:intergenic 55.0%
!! CCCTGTTCCAGAAGCACCTT+GGG - chr2.2:566860-566879 MS.gene83539:intron 55.0%
!! GCTTCTCGTAGAGAGCACTG+AGG + chr2.2:566654-566673 None:intergenic 55.0%
!! TCCCAAGGTGCTTCTGGAAC+AGG + chr2.2:566864-566883 None:intergenic 55.0%
!! TCCCTGTTCCAGAAGCACCT+TGG - chr2.2:566859-566878 MS.gene83539:intron 55.0%
ACCTCGGACTCAACGCCAGA+AGG - chr2.2:566914-566933 MS.gene83539:intron 60.0%
GCTAGTCACCCCCAGACAGA+TGG - chr2.2:567158-567177 MS.gene83539:intron 60.0%
TGCTGACCATGGCGAGTCTC+TGG - chr2.2:564532-564551 MS.gene83539:CDS 60.0%
TTGGAGGCAAGATGCGTGGG+AGG + chr2.2:568302-568321 None:intergenic 60.0%
! CGCATTGGCGGCAATCCTTG+TGG + chr2.2:565187-565206 None:intergenic 60.0%
! TCCTTCTGGCGTTGAGTCCG+AGG + chr2.2:566918-566937 None:intergenic 60.0%
!! GGTGCTTCTGGAACAGGGAG+TGG + chr2.2:566858-566877 None:intergenic 60.0%
GAGGCAAGATGCGTGGGAGG+AGG + chr2.2:568299-568318 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 563519 568483 563519 ID=MS.gene83539
chr2.2 mRNA 563519 568483 563519 ID=MS.gene83539.t1;Parent=MS.gene83539
chr2.2 exon 567697 568483 567697 ID=MS.gene83539.t1.exon1;Parent=MS.gene83539.t1
chr2.2 CDS 567697 568483 567697 ID=cds.MS.gene83539.t1;Parent=MS.gene83539.t1
chr2.2 exon 565262 565986 565262 ID=MS.gene83539.t1.exon2;Parent=MS.gene83539.t1
chr2.2 CDS 565262 565986 565262 ID=cds.MS.gene83539.t1;Parent=MS.gene83539.t1
chr2.2 exon 564353 564673 564353 ID=MS.gene83539.t1.exon3;Parent=MS.gene83539.t1
chr2.2 CDS 564353 564673 564353 ID=cds.MS.gene83539.t1;Parent=MS.gene83539.t1
chr2.2 exon 563519 563590 563519 ID=MS.gene83539.t1.exon4;Parent=MS.gene83539.t1
chr2.2 CDS 563519 563590 563519 ID=cds.MS.gene83539.t1;Parent=MS.gene83539.t1
Gene Sequence

>MS.gene83539

ATGCCTCCAAGAAGAAACGACCAAACACTTAGAGATATTCAAATGGAAGAAATGAGAAGACAAATCCAACAGTTACAAGAAACTGTAAATGCACAACAAGCACAATTGGAAGCCCAACACATGCAATCGGACGTTGATGAATCAAGTAGCGAATCATCATCATTAAGAAGTCGTCGTCCACAAAGACAATCATTCAGAGACAACGACATCAAGGTAGATATTCCTGATTTTGAAGGAAAGCTACATCCAGATGAGTTCGTTGATTGGCTCCAAACTGTTGAACGGGTCTTTGAGTATAAAGAGATACTTGAAGAAAAGAAAGTCAAGATCATTGCTGTCAAATTGAAGAAGCATGCTTCCATTTGGTGGGAAAATCTAAAAACAAAGCGAGCCCGTGAAGGAAAAAGCAAGATCAAGACTTGGGAGAAAATGCGTCGAGAACTAAGCAAAAAGTTCTTGCCTTCTCATTATTATCAAGATAATTTTATTCAACTACAGAACCTTTGTCAGAAAAACTTGTCTGTAGAAGAATACACTAGAGAATTTGAGAAGTTAATGATGAAGTGCGACATTCATGAAAGGGAGGAGCAAACAATCGCTCGTTACCTTGGTGGATTAAATACTGACGTTGCTCATCCAGTTCAACTCCAACAATACTGGACATTAGACGATGTTATTCGTTTAGCCATAAGAGTGGAGAAACATTTACCCAAGAAGCATTCTTACAGGAATTTTTCCTCCACTGAGAATTCTTCTTATCCCCGCAAAACAAATAACGATCAGCCCAGTACTTCTACAAAACCTTCTCTTAAACCCACCACAGTAAATAAACCCAAAGCTACCCAGTGTTTCAAATGTCAAGGTTTTGGACATATAGCTTCAAATTGTCCAACACGAAGAACCATCACCATCATCAAAGGCGAAGCTTATGAAGAAGTTGATGAGGAAACAAATCAAGATGAACCTAAGAAAGAAGAAGAGTTAGAGCCAATTTATGATGAAGAGCTCATTGTTGCTGACCATGGCGAGTCTCTGGTGATCAGACGAAGCCTACATACAATGTCAGCTCAAGAAGAGCATTGGTTGAGGAAAAACATTTTCCATACTCGTTGCACCACTGCTGGAAAAGTTTGTGATGTTATAATAGACAGTGGTAGTTGTGAAAATGTGGTATCGAACTACATGGTAGAGAAGTTAGAGATGCCAACACAAAGTCATCCTCATCCTTACAAACTACAATGGCTCAACAAAGGTAGTGAAGTGAAGGTTACGAAGCGTTGCCTTGTGAATTTTTCCATTGGTCAGAAGTATCAAGATCAAGTTTGGTGTGATGTTGTTCCAATGGATGCATGTCATCTTCTCCTTGGAAGACCCTGGCAATACGATCGTCGTGCTCATCATGATTGTTATGCCAACACCTACTCCTTTGTCAAAGATGGAGTAAAAATCAAGTTAACTCCATTACCACCGAGTGGACTTGATAAAAACAAAAATGAGTCCAAGCCATTAGTGTCTTTAATCACTAAGACTCAATTCAAAGAAGCTGTGGATGAAGTCCAAACCATGAGCTTTATCCTATTGTTCGAAGAAAATGCAGAAACTGTCCTTCCAGTAGAAATTGAACAAATGCTCAGTGAATTCCCAGATGTTGTACCAGAAGCTGTTCCACAAGGATTGCCGCCAATGCGAGACATTCAACATGCTATTGACTTTATTCCTGGAGCTGTCATTCCTAATAGACCAGCTTATAGAATGAGTCCACAAGAACATGCTGAAATTACACGTCAAGTCGAAGAATTGCTGAGGAAAGGACTAATACAAGAAAGTGTTAGCCCTTGTGCTGTTCCTGCAATTTTAGTCCCCAAAAAGGATGGAAGCTGGAGAATGTGTGTTGATAGTCGAGCTGTCAACAAGATTACCATCAAGTATCGATTTCCGATACCTAGACTTGATGATTTATTAGATCAGTTGCATGGTGCCACCATCTTTTCAAAGATCGATCTTCGAAGTGGATACCATCAAATCAGGTTTAGGCCAGGAGATGAATGGAAGACTGCATTTAAAACCAGAGATGGTTTATATGAATGGACAGTGATGCCCTTTGGGTTATCTAATGCTCCAAGTACCTTCATGCGTCTCATGAATCAAGTACTTCGACCATTCATTGGCAAGTTTGTAGTGGTCTACTTTGACGATATCTTGATCTACAGCAAACACAAGGAGGAACACTTAGAGCAGCTTCGACAAGTGTTACAAACTCTTCGCAAACAAAAACTCTATGCAAATTTGAAGAAATGTTCCTTCCTAACCAACGAAGTTACTTTCCTGGGTTACATAATCACAGCTGAAGGTATTCGAGTTGACTCCAGCAAGGTTGAAGCCATCAACAGTTGGCCTATTCCACAGTCAATTCATGATGTTAGAAGTTTCCATGGATTAGCTTCATTTTATAGAAGGTTCATCAAGAATTTTAGCTCTGTTGCTGCCCCGCTTACAGATTGCATAAAGGGAGATCAATTCCAATGGACCGAGCAAGCACAAAAAAGTTTTGACAACCTAAAACAACTTTTGACTGAAACACCAGTGCTTGCCCTTCCCAACTTTGACCAGGTGTTCGAAGTAAGTTGTGACGCTTCCAATTCAGGAATTGGCGCGGTTCTATGTCAAGAAGGTCATCCTATAGCCTTCTTTAGTGAAAAGCTCAACAATGGTAAACTTAGATACTCAACCTATGATAAAGAATTTTATGCCATTGTCCGAGCCTTGCAACATTGGAGTCATTACTTGTTGAATAAAGAATTTATTCTTTATTCTGATCATGAAGCTCTAAAGCATTTGAATTCCCAACAAAAGATCAATCGCAGACATGCCGCTTGGAGTGAGTTTTTACAAGCTTATCCGTTCTTACTAAAACATAAGGCGGGAGTTCAAAATGTTGTTGCAGATGCTCTTAGCAGGCGTCATACCCTACTTGCCACTATGCAAATGAAAGTCATTGGATTTGAGACAGTCAAGGAGTTATACAAAGATGATCCAGATTTTCAAAAGTTTTGGAATGCCACTGATTCACAATCCTCTCAGGACTACTACAGACATGAGGGATTTTTGTTCAAAGGAAAAACCTTATGTATTCCTCAGTGCTCTCTACGAGAAGCCATTATTTGGGAAGCCCATGATGGAGGATTAGCAGGTCATTTTGGACGAGATAAAACTGTTGCTTTAGTGAGAGAGAATTTCTATTGGCCAAGACTTGAAAGAGACGTCTACAAACATATTCAAAGATGTCGAGTATGCCATTTGGCAAAGGCCAAAGGCCAAAACACTGGTTTTTATATGCCACTCCCTGTTCCAGAAGCACCTTGGGAAGATGTTAGCATGGACTTTGTGCTTGGATTACCTCGGACTCAACGCCAGAAGGATTCTGTGATGGTAGTTGTGGATAGATTTTCAAAGATGGCTCATTTCATCCCATGCCAAAAGACTAATGATGCCGTTCAAGTTGCTGACTTATACTTCAAGGAAATTGTTCGTCTTCATGGAATTCCAAAAACCATCACTTCTGATAGAGATGTTAAATTCTTAAGTCATTTTTGGAGAACCTTATGGAGGAAGATGGGTACTAAACTTCAGTTCAGTAGTGCTAGTCACCCCCAGACAGATGGACAAACTGAAGCTGTTAACAGGATTTTGGGAAACCTACTTCGGAGCTTTATCGGTAAAAATCTAAAACAATGGGATCTCATCTTGGCACAAGTTGAATTTGCATACAATAATTCAACTAATCAAGCAACTGGAAAATGTCCTTTTGAGGTAGCATACGGAACTCGACCACACAGTCCGTTAGACTTGACTCCATCATCAGATAAACATCAGTATAGTGCAGATGCAGAAAGCAGAGCAAAAGAGATCAAGAAACTGCATGAACAAGTTCGCCAACGGATAATTCAGCAAAATTCACGATACAAGACTAATCGTGACAAGCACAGAAGACAACAAATCTTTAAAATTGGAGATTTGGTATGGATACATTTGCGTAAAGAACGATTTCCAAAACAACCAAATGCCAAGTTGTCACCAAGAGCTGATGGTCCTTTCAAAATAGTACAAAAAATCAATGACAATGCTTACAAGGTAGAATTGCCAGGAACCTATGGTGTCTCAGCAACCTTCAATGTTGCCGACCTTTCACCATATCTGGATGATGAACTTGCTATAAACTCGAGGACGAGTTCTGTTCAACCCGGGGAGAATGATACAGATTAATTGCATCATCCCTTACCTCATATTCCACCACTCTACTATTAACAATAAGTCCTACCTTGCATCATCCCTTACCTCATATTCCACCACTCTACTATTAACAATAAGGCCAACAAGCCATGTTTGCCATTTACTAATTTGTGTCCATTACTATTTCAACTACCATGGCCTCTAGGATTACTATAAATAAGGCCATTTCCTTCATGTATTCTCACAATTTGAAATATATACAAAACTTGAGTTTTCTCATTTGAGAGTTAGAGAGTGGATTCTCTCTTGGCTTCTGAGCCAATTACCCCCCGAAATTGTAAGTTTCGTCAATTACCCTCTTGATATTAACAAAACTTCAATTACCCCATGAAATTGCACAACGTTAATCAATTTACCCCCTCCGTCAAATTCTTCTGTTAGTCAACATAACGTTTTGCAAATACCCCCTGAAGTTTTGCACTTATGTGCAAAATGCCACCTAGAACTTGAAATTTTTTATATTTTTTTTTATCCTTGACTCAAAATGCCTCCTCCCACGCATCTTGCCTCCAATTTTGTAGAATTTGATGCACATATTTACATGCAGAAAAAAAAATATTGTTATTAGTTTTACTTGAACACTTTTATTCACATTGCTAAAAGGATGGAAATCTTTTCTATGTGGTGATTGTTGTGATCATGGAACACAAATACACAAACACATTGTACAGGTGA
Protein sequence

>MS.gene83539.t1

MPPRRNDQTLRDIQMEEMRRQIQQLQETVNAQQAQLEAQHMQSDVDESSSESSSLRSRRPQRQSFRDNDIKVDIPDFEGKLHPDEFVDWLQTVERVFEYKEILEEKKVKIIAVKLKKHASIWWENLKTKRAREGKSKIKTWEKMRRELSKKFLPSHYYQDNFIQLQNLCQKNLSVEEYTREFEKLMMKCDIHEREEQTIARYLGGLNTDVAHPVQLQQYWTLDDVIRLAIRVEKHLPKKHSYRNFSSTENSSYPRKTNNDQPNCIKGDQFQWTEQAQKSFDNLKQLLTETPVLALPNFDQVFEVSCDASNSGIGAVLCQEGHPIAFFSEKLNNGKLRYSTYDKEFYAIVRALQHWSHYLLNKEFILYSDHEALKHLNSQQKINRRHAAWSEFLQAYPFLLKHKAGVQNVVADALSRRHTLLATMQMKVIGFETVKELYKDDPDFQKFWNATDSQSSQDYYRHEGFLFKGKTLCIPQCSLREAIIWEAHDGGLAGHFGRDKTVALVAYGTRPHSPLDLTPSSDKHQYSADAESRAKEIKKLHEQVRQRIIQQNSRYKTNRDKHRRQQIFKIGDLVWIHLRKERFPKQPNAKLSPRADGPFKIVQKINDNAYKDGNLFYVVIVVIMEHKYTNTLYR