AlfalfaGEDB | MS.gene84469

M. sativa cultivar XinJiangDaYe / MS.gene84469

KEGG: -
GO: -
PFAM: PF04720.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84469.t1	XP_013467004.1	93.9	361	15	5	1	358	1	357	8.10E-158	566.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84469.t1	A0A072VG82	93.9	361	15	5	1	358	1	357	5.8e-158	566.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049341	MS.gene84469	0.806349	8.59E-50	-1.69E-46
MS.gene049404	MS.gene84469	0.807743	4.35E-50	-1.69E-46
MS.gene049808	MS.gene84469	0.8232	1.57E-53	-1.69E-46
MS.gene050237	MS.gene84469	0.81515	1.07E-51	-1.69E-46
MS.gene050807	MS.gene84469	0.826301	2.92E-54	-1.69E-46
MS.gene051328	MS.gene84469	0.819701	1.01E-52	-1.69E-46
MS.gene051719	MS.gene84469	0.818282	2.13E-52	-1.69E-46
MS.gene051720	MS.gene84469	0.817245	3.65E-52	-1.69E-46
MS.gene052133	MS.gene84469	0.811368	7.25E-51	-1.69E-46
MS.gene052516	MS.gene84469	0.821853	3.24E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84469.t1	MTR_1g041155	94.183	361	14	5	1	358	1	357	0.0	654
MS.gene84469.t1	MTR_1g076500	56.736	386	130	10	1	353	1	382	8.22e-131	379
MS.gene84469.t1	MTR_7g095960	43.817	372	172	11	4	358	5	356	1.03e-92	281
MS.gene84469.t1	MTR_1g070970	45.135	370	160	11	4	356	5	348	5.30e-87	266
MS.gene84469.t1	MTR_8g093440	41.549	142	76	1	154	288	20	161	4.45e-37	133
MS.gene84469.t1	MTR_4g132963	34.742	213	123	2	61	273	38	234	5.86e-37	135
MS.gene84469.t1	MTR_4g132940	34.742	213	123	2	61	273	38	234	5.86e-37	135
MS.gene84469.t1	MTR_8g093440	41.549	142	76	1	154	288	82	223	1.18e-36	134
MS.gene84469.t1	MTR_7g083080	37.333	225	108	8	65	274	50	256	5.56e-36	133
MS.gene84469.t1	MTR_4g132970	40.602	133	79	0	156	288	138	270	1.60e-34	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84469.t1	AT3G22970	49.610	385	145	13	4	358	5	370	1.80e-105	314
MS.gene84469.t1	AT4G14620	49.589	365	145	13	4	356	2	339	6.75e-96	289
MS.gene84469.t1	AT2G38820	44.164	317	153	7	4	308	5	309	6.52e-85	259
MS.gene84469.t1	AT3G22970	51.587	252	95	5	119	358	23	259	5.72e-74	230
MS.gene84469.t1	AT3G54550	41.577	279	136	9	5	273	6	267	1.74e-61	199
MS.gene84469.t1	AT2G38820	40.206	194	96	5	4	185	5	190	2.36e-35	129
MS.gene84469.t1	AT3G07350	32.157	255	149	7	52	292	34	278	2.54e-34	128
MS.gene84469.t1	AT2G39650	43.902	123	63	1	158	274	52	174	3.00e-32	121
MS.gene84469.t1	AT2G39650	43.902	123	63	1	158	274	114	236	8.24e-32	121
MS.gene84469.t1	AT3G25240	33.778	225	129	5	58	274	30	242	1.35e-31	120

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Find 86 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAATTCATGTCCTGC+TGG	0.520750	1.1:-24989564	MS.gene84469:intron
AAACCGAAGAGTGGTGAAAG+AGG	0.554832	1.1:-24989004	MS.gene84469:CDS
AAAGCAAGTCTCCGATGCGG+CGG	0.623703	1.1:-24989176	MS.gene84469:CDS
AACAATACCACTAAAGATGG+TGG	0.638792	1.1:-24990057	MS.gene84469:CDS
AACTGAGTCAGTTGAATCGG+TGG	0.613713	1.1:+24989852	None:intergenic
AAGAACAATACCACTAAAGA+TGG	0.502600	1.1:-24990060	MS.gene84469:CDS
AAGCAGAGTTTGAAGAAGAA+AGG	0.517627	1.1:-24989271	MS.gene84469:CDS
AAGGAATGCATGTTCCGCCG+TGG	0.669326	1.1:-24989252	MS.gene84469:CDS
AATACCACTAAAGATGGTGG+TGG	0.666485	1.1:-24990054	MS.gene84469:CDS
ACCACCACCACCATCTTTAG+TGG	0.439948	1.1:+24990050	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAACAATACCACTAAAGA+TGG	-	chr1.1:24989084-24989103	MS.gene84469:CDS	30.0%
CATCCATTTGCAAATCAAAA+TGG	-	chr1.1:24989554-24989573	MS.gene84469:intron	30.0%
TCTTTAGTGGTATTGTTCTT+AGG	+	chr1.1:24989084-24989103	None:intergenic	30.0%
TTAGAGAATTAAATACCAGC+AGG	+	chr1.1:24989598-24989617	None:intergenic	30.0%
TTCTCTGAATCTATGTCAAT+TGG	+	chr1.1:24988982-24989001	None:intergenic	30.0%
AAAACAAATTCATGTCCTGC+TGG	-	chr1.1:24989580-24989599	MS.gene84469:CDS	35.0%
AACAATACCACTAAAGATGG+TGG	-	chr1.1:24989087-24989106	MS.gene84469:CDS	35.0%
AAGCAGAGTTTGAAGAAGAA+AGG	-	chr1.1:24989873-24989892	MS.gene84469:CDS	35.0%
CTGAATCTATGTCAATTGGT+TGG	+	chr1.1:24988978-24988997	None:intergenic	35.0%
CTTAACTGAGTCAGTTGAAT+CGG	+	chr1.1:24989298-24989317	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	24988958	24990208	24988958	ID=MS.gene84469
chr1.1	mRNA	24988958	24990208	24988958	ID=MS.gene84469.t1;Parent=MS.gene84469
chr1.1	exon	24989849	24990208	24989849	ID=MS.gene84469.t1.exon1;Parent=MS.gene84469.t1
chr1.1	CDS	24989849	24990208	24989849	ID=cds.MS.gene84469.t1;Parent=MS.gene84469.t1
chr1.1	exon	24989565	24989757	24989565	ID=MS.gene84469.t1.exon2;Parent=MS.gene84469.t1
chr1.1	CDS	24989565	24989757	24989565	ID=cds.MS.gene84469.t1;Parent=MS.gene84469.t1
chr1.1	exon	24988958	24989481	24988958	ID=MS.gene84469.t1.exon3;Parent=MS.gene84469.t1
chr1.1	CDS	24988958	24989481	24988958	ID=cds.MS.gene84469.t1;Parent=MS.gene84469.t1

Gene Sequence

>MS.gene84469

ATGGCTCCGTTGAAGATCCAACCAATTGACATAGATTCAGAGAAAGCCACTACGGAACTGGTTCGAAATGAACCAGTTTCGAAGTGGAGGTTGAAGAGGTTTTTCGCTTTCGAGAAACCTTTTCCTAAGAACAATACCACTAAAGATGGTGGTGGTGGTGGAGTTGCTGAGTTGGAACCAAGCTCTGTTTGCTTGGCGAAAATGGTTCAGAGTTTCATGGAAGAACAACCGCAACCGCAACTTCAACCACCGTCTCGTAACCGCTGCAACTGTTTCAACGCTAACAGCTCCGACGAAGATGATTTCGACTTCAACGGCTATACACATGAATCAGCCACCGATTCAACTGACTCAGTTAAGGTAAAAACTAAAAGCAAAATCAGAATTCAATTTCATAATTTCAATTTTGATTATAGTTTTTTATTTTGATTTTGGATTTTTGTTTTTGTAGAATTTGATTCCTTGTGTAAGTGTTGAAGAACGGAATTTACTAGCAGATGCAACGAAAATTGTTGAGAAGAATAGCAAAATTTACAAAAGGAAAGAAGATTTGATTAAGATCGTTGCTGAAAAGCTTCAATCTCTTGGTTACGATTCATCCATTTGCAAATCAAAATGGGAGAAAACAAATTCATGTCCTGCTGGTATTTAATTCTCTAATCAGATTCAAAATTCAAAATTGAGTTAACTCAACTCGTTTTCTGAATCGTTTTTTCTTTTGTTTCAGGTGATTATCAATTCATTGATGCGATTGTGGAAGGTGAAACGTTGATTATTGATATCGATTTTCGATCAGAGTTTGAAATCGCGAGATCTACAAGTCAGTATAAGACGATTCTTCAATCGCTTCCGTATATTTTCGTCGGCAGAAAGGAACGGTTGAAGCAGATCGTCACCGTCATGTCGGAGGCGGCGAAGCAGAGTTTGAAGAAGAAAGGAATGCATGTTCCGCCGTGGAGGAAGCGCGATTACATGTTAGCGAAGTGGATCTCTCCGTCGGCAGCTAGGCCAAAGCAAGTCTCCGATGCGGCGGCGGTGGTGGAAACAGTTTCATCGGAGGTGGATAGTGATTCTGGTGAATTGGAGCTGATTTTTGGTGAGGAGAAAGCTTCGCCGGAGGAGGTAGTTACGGCGGCGACAGCGACAGCGACGGTGAGTCCAGCGTGGCAGTTACCGGCGGTGAAACCGAAGAGTGGTGAAAGAGGAATGAAGGTGACTGGATTAGCTTCTTTGCTGAAGGAGAAACCATAG

Protein sequence

>MS.gene84469.t1

MAPLKIQPIDIDSEKATTELVRNEPVSKWRLKRFFAFEKPFPKNNTTKDGGGGGVAELEPSSVCLAKMVQSFMEEQPQPQLQPPSRNRCNCFNANSSDEDDFDFNGYTHESATDSTDSVKNLIPCVSVEERNLLADATKIVEKNSKIYKRKEDLIKIVAEKLQSLGYDSSICKSKWEKTNSCPAGDYQFIDAIVEGETLIIDIDFRSEFEIARSTSQYKTILQSLPYIFVGRKERLKQIVTVMSEAAKQSLKKKGMHVPPWRKRDYMLAKWISPSAARPKQVSDAAAVVETVSSEVDSDSGELELIFGEEKASPEEVVTAATATATVSPAWQLPAVKPKSGERGMKVTGLASLLKEKP