Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84469.t1 | XP_013467004.1 | 93.9 | 361 | 15 | 5 | 1 | 358 | 1 | 357 | 8.10E-158 | 566.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84469.t1 | A0A072VG82 | 93.9 | 361 | 15 | 5 | 1 | 358 | 1 | 357 | 5.8e-158 | 566.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene84469 | 0.806349 | 8.59E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene84469 | 0.807743 | 4.35E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene84469 | 0.8232 | 1.57E-53 | -1.69E-46 |
| MS.gene050237 | MS.gene84469 | 0.81515 | 1.07E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene84469 | 0.826301 | 2.92E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene84469 | 0.819701 | 1.01E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene84469 | 0.818282 | 2.13E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene84469 | 0.817245 | 3.65E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene84469 | 0.811368 | 7.25E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene84469 | 0.821853 | 3.24E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene84469 | 0.814094 | 1.84E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene84469 | 0.807328 | 5.33E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene84469 | 0.801957 | 7.05E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene84469 | 0.801329 | 9.48E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene84469 | 0.800565 | 1.36E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene84469 | 0.811641 | 6.33E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene84469 | 0.816972 | 4.20E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene84469 | 0.820507 | 6.61E-53 | -1.69E-46 |
| MS.gene055608 | MS.gene84469 | 0.804418 | 2.18E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene84469 | 0.815849 | 7.49E-52 | -1.69E-46 |
| MS.gene057287 | MS.gene84469 | 0.870827 | 1.09E-66 | -1.69E-46 |
| MS.gene058009 | MS.gene84469 | 0.802973 | 4.35E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene84469 | 0.805565 | 1.26E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene84469 | 0.805716 | 1.17E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene84469 | 0.824596 | 7.41E-54 | -1.69E-46 |
| MS.gene060587 | MS.gene84469 | 0.8202 | 7.78E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84469.t1 | MTR_1g041155 | 94.183 | 361 | 14 | 5 | 1 | 358 | 1 | 357 | 0.0 | 654 |
| MS.gene84469.t1 | MTR_1g076500 | 56.736 | 386 | 130 | 10 | 1 | 353 | 1 | 382 | 8.22e-131 | 379 |
| MS.gene84469.t1 | MTR_7g095960 | 43.817 | 372 | 172 | 11 | 4 | 358 | 5 | 356 | 1.03e-92 | 281 |
| MS.gene84469.t1 | MTR_1g070970 | 45.135 | 370 | 160 | 11 | 4 | 356 | 5 | 348 | 5.30e-87 | 266 |
| MS.gene84469.t1 | MTR_8g093440 | 41.549 | 142 | 76 | 1 | 154 | 288 | 20 | 161 | 4.45e-37 | 133 |
| MS.gene84469.t1 | MTR_4g132963 | 34.742 | 213 | 123 | 2 | 61 | 273 | 38 | 234 | 5.86e-37 | 135 |
| MS.gene84469.t1 | MTR_4g132940 | 34.742 | 213 | 123 | 2 | 61 | 273 | 38 | 234 | 5.86e-37 | 135 |
| MS.gene84469.t1 | MTR_8g093440 | 41.549 | 142 | 76 | 1 | 154 | 288 | 82 | 223 | 1.18e-36 | 134 |
| MS.gene84469.t1 | MTR_7g083080 | 37.333 | 225 | 108 | 8 | 65 | 274 | 50 | 256 | 5.56e-36 | 133 |
| MS.gene84469.t1 | MTR_4g132970 | 40.602 | 133 | 79 | 0 | 156 | 288 | 138 | 270 | 1.60e-34 | 129 |
| MS.gene84469.t1 | MTR_2g025520 | 43.939 | 132 | 70 | 1 | 162 | 293 | 142 | 269 | 7.85e-34 | 127 |
| MS.gene84469.t1 | MTR_2g013780 | 40.945 | 127 | 69 | 2 | 154 | 274 | 143 | 269 | 4.08e-32 | 123 |
| MS.gene84469.t1 | MTR_4g078310 | 39.683 | 126 | 67 | 2 | 154 | 271 | 119 | 243 | 4.16e-30 | 117 |
| MS.gene84469.t1 | MTR_4g088770 | 37.008 | 127 | 74 | 2 | 154 | 274 | 149 | 275 | 1.63e-29 | 116 |
| MS.gene84469.t1 | MTR_8g012240 | 30.833 | 240 | 127 | 8 | 52 | 274 | 41 | 258 | 3.98e-29 | 114 |
| MS.gene84469.t1 | MTR_4g088760 | 37.008 | 127 | 74 | 2 | 154 | 274 | 202 | 328 | 4.56e-29 | 115 |
| MS.gene84469.t1 | MTR_2g013880 | 30.189 | 159 | 105 | 2 | 127 | 279 | 116 | 274 | 8.62e-27 | 108 |
| MS.gene84469.t1 | MTR_7g053310 | 29.956 | 227 | 127 | 8 | 62 | 275 | 40 | 247 | 1.99e-26 | 107 |
| MS.gene84469.t1 | MTR_5g008720 | 33.871 | 124 | 76 | 1 | 154 | 271 | 97 | 220 | 2.07e-23 | 97.8 |
| MS.gene84469.t1 | MTR_1g103610 | 87.879 | 33 | 4 | 0 | 256 | 288 | 1 | 33 | 1.47e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84469.t1 | AT3G22970 | 49.610 | 385 | 145 | 13 | 4 | 358 | 5 | 370 | 1.80e-105 | 314 |
| MS.gene84469.t1 | AT4G14620 | 49.589 | 365 | 145 | 13 | 4 | 356 | 2 | 339 | 6.75e-96 | 289 |
| MS.gene84469.t1 | AT2G38820 | 44.164 | 317 | 153 | 7 | 4 | 308 | 5 | 309 | 6.52e-85 | 259 |
| MS.gene84469.t1 | AT3G22970 | 51.587 | 252 | 95 | 5 | 119 | 358 | 23 | 259 | 5.72e-74 | 230 |
| MS.gene84469.t1 | AT3G54550 | 41.577 | 279 | 136 | 9 | 5 | 273 | 6 | 267 | 1.74e-61 | 199 |
| MS.gene84469.t1 | AT2G38820 | 40.206 | 194 | 96 | 5 | 4 | 185 | 5 | 190 | 2.36e-35 | 129 |
| MS.gene84469.t1 | AT3G07350 | 32.157 | 255 | 149 | 7 | 52 | 292 | 34 | 278 | 2.54e-34 | 128 |
| MS.gene84469.t1 | AT2G39650 | 43.902 | 123 | 63 | 1 | 158 | 274 | 52 | 174 | 3.00e-32 | 121 |
| MS.gene84469.t1 | AT2G39650 | 43.902 | 123 | 63 | 1 | 158 | 274 | 114 | 236 | 8.24e-32 | 121 |
| MS.gene84469.t1 | AT3G25240 | 33.778 | 225 | 129 | 5 | 58 | 274 | 30 | 242 | 1.35e-31 | 120 |
| MS.gene84469.t1 | AT1G62420 | 31.163 | 215 | 120 | 6 | 65 | 273 | 38 | 230 | 2.50e-28 | 112 |
| MS.gene84469.t1 | AT4G32480 | 40.164 | 122 | 67 | 2 | 158 | 273 | 120 | 241 | 4.57e-28 | 111 |
| MS.gene84469.t1 | AT2G20670 | 39.474 | 114 | 63 | 1 | 166 | 273 | 130 | 243 | 1.07e-26 | 107 |
| MS.gene84469.t1 | AT1G77160 | 34.118 | 170 | 89 | 3 | 151 | 302 | 22 | 186 | 1.97e-26 | 105 |
| MS.gene84469.t1 | AT1G77160 | 30.244 | 205 | 117 | 4 | 119 | 302 | 42 | 241 | 6.81e-26 | 105 |
| MS.gene84469.t1 | AT1G77145 | 34.932 | 146 | 77 | 2 | 151 | 278 | 72 | 217 | 1.25e-25 | 104 |
| MS.gene84469.t1 | AT1G12030 | 39.823 | 113 | 67 | 1 | 162 | 273 | 118 | 230 | 1.97e-25 | 104 |
| MS.gene84469.t1 | AT1G77145 | 38.235 | 102 | 53 | 1 | 187 | 278 | 59 | 160 | 6.76e-20 | 87.0 |
Find 86 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGTTTGCTTGGCGAAAA+TGG | 0.121680 | 1.1:-24990004 | MS.gene84469:CDS |
| CATCCATTTGCAAATCAAAA+TGG | 0.188560 | 1.1:-24989590 | MS.gene84469:CDS |
| TCTTTAGTGGTATTGTTCTT+AGG | 0.254266 | 1.1:+24990063 | None:intergenic |
| TTCTCTGAATCTATGTCAAT+TGG | 0.321455 | 1.1:+24990165 | None:intergenic |
| TTCAACCTCCACTTCGAAAC+TGG | 0.330861 | 1.1:+24990114 | None:intergenic |
| GCCGCATCGGAGACTTGCTT+TGG | 0.348894 | 1.1:+24989178 | None:intergenic |
| TCGGAGGTGGATAGTGATTC+TGG | 0.369464 | 1.1:-24989133 | MS.gene84469:CDS |
| GAGTCCAGCGTGGCAGTTAC+CGG | 0.378357 | 1.1:-24989032 | MS.gene84469:CDS |
| CTCCGATGCGGCGGCGGTGG+TGG | 0.388897 | 1.1:-24989167 | MS.gene84469:CDS |
| GTGGTATTGTTCTTAGGAAA+AGG | 0.405068 | 1.1:+24990069 | None:intergenic |
| TTTCTGCCGACGAAAATATA+CGG | 0.409086 | 1.1:+24989337 | None:intergenic |
| GCTGAAAAGCTTCAATCTCT+TGG | 0.409442 | 1.1:-24989621 | MS.gene84469:CDS |
| ATCCATTTGCAAATCAAAAT+GGG | 0.412073 | 1.1:-24989589 | MS.gene84469:CDS |
| ATTCCTCTTTCACCACTCTT+CGG | 0.422133 | 1.1:+24989001 | None:intergenic |
| AGTCTCCGATGCGGCGGCGG+TGG | 0.425062 | 1.1:-24989170 | MS.gene84469:CDS |
| ACCACCACCACCATCTTTAG+TGG | 0.439948 | 1.1:+24990050 | None:intergenic |
| GGATAGTGATTCTGGTGAAT+TGG | 0.451879 | 1.1:-24989125 | MS.gene84469:CDS |
| CTTAACTGAGTCAGTTGAAT+CGG | 0.458623 | 1.1:+24989849 | None:intergenic |
| CGATTCAACTGACTCAGTTA+AGG | 0.466446 | 1.1:-24989848 | MS.gene84469:intron |
| TTCGCCAAGCAAACAGAGCT+TGG | 0.466708 | 1.1:+24990009 | None:intergenic |
| GGAACCAAGCTCTGTTTGCT+TGG | 0.476354 | 1.1:-24990013 | MS.gene84469:CDS |
| AGAGAAAGCCACTACGGAAC+TGG | 0.478102 | 1.1:-24990148 | MS.gene84469:CDS |
| TGGTGGTGGAGTTGCTGAGT+TGG | 0.486575 | 1.1:-24990034 | MS.gene84469:CDS |
| CCACTCTTCGGTTTCACCGC+CGG | 0.488504 | 1.1:+24989013 | None:intergenic |
| CTGAATCTATGTCAATTGGT+TGG | 0.492657 | 1.1:+24990169 | None:intergenic |
| AGAATAGCAAAATTTACAAA+AGG | 0.494795 | 1.1:-24989668 | MS.gene84469:CDS |
| GCAAGTCTCCGATGCGGCGG+CGG | 0.496129 | 1.1:-24989173 | MS.gene84469:CDS |
| AAGAACAATACCACTAAAGA+TGG | 0.502600 | 1.1:-24990060 | MS.gene84469:CDS |
| CGAGACGGTGGTTGAAGTTG+CGG | 0.502860 | 1.1:+24989952 | None:intergenic |
| GAGTGGTGAAAGAGGAATGA+AGG | 0.505285 | 1.1:-24988996 | MS.gene84469:CDS |
| TGGATTAGCTTCTTTGCTGA+AGG | 0.511501 | 1.1:-24988969 | MS.gene84469:CDS |
| GGAGAAAGCTTCGCCGGAGG+AGG | 0.512134 | 1.1:-24989086 | MS.gene84469:CDS |
| TTCGCCGGAGGAGGTAGTTA+CGG | 0.512281 | 1.1:-24989077 | MS.gene84469:CDS |
| TGCTTTGGCCTAGCTGCCGA+CGG | 0.512808 | 1.1:+24989193 | None:intergenic |
| TTCCACCACCGCCGCCGCAT+CGG | 0.514720 | 1.1:+24989165 | None:intergenic |
| AAGCAGAGTTTGAAGAAGAA+AGG | 0.517627 | 1.1:-24989271 | MS.gene84469:CDS |
| AAAACAAATTCATGTCCTGC+TGG | 0.520750 | 1.1:-24989564 | MS.gene84469:intron |
| ACCGCCGGTAACTGCCACGC+TGG | 0.521213 | 1.1:+24989028 | None:intergenic |
| GGATCTCTCCGTCGGCAGCT+AGG | 0.526135 | 1.1:-24989201 | MS.gene84469:CDS |
| GAAAATGGTTCAGAGTTTCA+TGG | 0.527012 | 1.1:-24989989 | MS.gene84469:CDS |
| GGAAACAGTTTCATCGGAGG+TGG | 0.532775 | 1.1:-24989146 | MS.gene84469:CDS |
| ACTAAAGATGGTGGTGGTGG+TGG | 0.532828 | 1.1:-24990048 | MS.gene84469:CDS |
| GGTGGTTGAAGTTGCGGTTG+CGG | 0.536574 | 1.1:+24989958 | None:intergenic |
| CGTCACCGTCATGTCGGAGG+CGG | 0.549114 | 1.1:-24989296 | MS.gene84469:CDS |
| TCAATTCATTGATGCGATTG+TGG | 0.553988 | 1.1:-24989452 | MS.gene84469:CDS |
| TGGTGAGGAGAAAGCTTCGC+CGG | 0.554242 | 1.1:-24989092 | MS.gene84469:CDS |
| AAACCGAAGAGTGGTGAAAG+AGG | 0.554832 | 1.1:-24989004 | MS.gene84469:CDS |
| GAAAGAGGAATGAAGGTGAC+TGG | 0.556629 | 1.1:-24988989 | MS.gene84469:CDS |
| TTTCGAAGTGGAGGTTGAAG+AGG | 0.556890 | 1.1:-24990110 | MS.gene84469:CDS |
| CGTTCTTCAACACTTACACA+AGG | 0.565445 | 1.1:+24989726 | None:intergenic |
| CTTGTGTAAGTGTTGAAGAA+CGG | 0.570166 | 1.1:-24989725 | MS.gene84469:CDS |
| TCAATTGGTTGGATCTTCAA+CGG | 0.580989 | 1.1:+24990180 | None:intergenic |
| ATGTAATCGCGCTTCCTCCA+CGG | 0.582747 | 1.1:+24989235 | None:intergenic |
| CTTCGCCGCCTCCGACATGA+CGG | 0.584516 | 1.1:+24989291 | None:intergenic |
| TTCATTGATGCGATTGTGGA+AGG | 0.586622 | 1.1:-24989448 | MS.gene84469:CDS |
| GAAGATGATTTCGACTTCAA+CGG | 0.587847 | 1.1:-24989892 | MS.gene84469:CDS |
| ATGAACCAGTTTCGAAGTGG+AGG | 0.593261 | 1.1:-24990119 | MS.gene84469:CDS |
| ACCACTAAAGATGGTGGTGG+TGG | 0.595959 | 1.1:-24990051 | MS.gene84469:CDS |
| GCCGCCGTAACTACCTCCTC+CGG | 0.598847 | 1.1:+24989073 | None:intergenic |
| GGTGGTGGAAACAGTTTCAT+CGG | 0.598901 | 1.1:-24989152 | MS.gene84469:CDS |
| ATTTCGAACCAGTTCCGTAG+TGG | 0.603877 | 1.1:+24990140 | None:intergenic |
| AACTGAGTCAGTTGAATCGG+TGG | 0.613713 | 1.1:+24989852 | None:intergenic |
| AGATTCAGAGAAAGCCACTA+CGG | 0.617727 | 1.1:-24990154 | MS.gene84469:CDS |
| AGCGAAGTGGATCTCTCCGT+CGG | 0.622895 | 1.1:-24989209 | MS.gene84469:CDS |
| AAAGCAAGTCTCCGATGCGG+CGG | 0.623703 | 1.1:-24989176 | MS.gene84469:CDS |
| GAATGCATGTTCCGCCGTGG+AGG | 0.625206 | 1.1:-24989249 | MS.gene84469:CDS |
| GCAGATCGTCACCGTCATGT+CGG | 0.626575 | 1.1:-24989302 | MS.gene84469:CDS |
| GAAGTCGAAATCATCTTCGT+CGG | 0.627970 | 1.1:+24989897 | None:intergenic |
| GAAATGAACCAGTTTCGAAG+TGG | 0.634899 | 1.1:-24990122 | MS.gene84469:CDS |
| AACAATACCACTAAAGATGG+TGG | 0.638792 | 1.1:-24990057 | MS.gene84469:CDS |
| GCGATTACATGTTAGCGAAG+TGG | 0.650775 | 1.1:-24989222 | MS.gene84469:CDS |
| GATCGTCACCGTCATGTCGG+AGG | 0.651203 | 1.1:-24989299 | MS.gene84469:CDS |
| TCCAGCGTGGCAGTTACCGG+CGG | 0.657779 | 1.1:-24989029 | MS.gene84469:CDS |
| CAGTTGCAGCGGTTACGAGA+CGG | 0.659954 | 1.1:+24989937 | None:intergenic |
| CCGGCGGTGAAACCGAAGAG+TGG | 0.661349 | 1.1:-24989013 | MS.gene84469:CDS |
| TAGCGTTGAAACAGTTGCAG+CGG | 0.661984 | 1.1:+24989926 | None:intergenic |
| AATACCACTAAAGATGGTGG+TGG | 0.666485 | 1.1:-24990054 | MS.gene84469:CDS |
| AAGGAATGCATGTTCCGCCG+TGG | 0.669326 | 1.1:-24989252 | MS.gene84469:CDS |
| GGCGGCGACAGCGACAGCGA+CGG | 0.672784 | 1.1:-24989056 | MS.gene84469:CDS |
| GGTGGAAACAGTTTCATCGG+AGG | 0.687950 | 1.1:-24989149 | MS.gene84469:CDS |
| GCCGGAGGAGGTAGTTACGG+CGG | 0.688861 | 1.1:-24989074 | MS.gene84469:CDS |
| TGAGGAGAAAGCTTCGCCGG+AGG | 0.709522 | 1.1:-24989089 | MS.gene84469:CDS |
| TTGCAGCGGTTACGAGACGG+TGG | 0.718582 | 1.1:+24989940 | None:intergenic |
| GCCAAAGCAAGTCTCCGATG+CGG | 0.718766 | 1.1:-24989179 | MS.gene84469:CDS |
| CAGCGACGGTGAGTCCAGCG+TGG | 0.734694 | 1.1:-24989042 | MS.gene84469:CDS |
| TAATCGCGCTTCCTCCACGG+CGG | 0.770748 | 1.1:+24989238 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGTTTTTTATTTTGATTT+TGG | - | chr1.1:24989370-24989389 | MS.gene84469:CDS | 10.0% |
| !! | AGAATAGCAAAATTTACAAA+AGG | - | chr1.1:24989476-24989495 | MS.gene84469:intron | 20.0% |
| ! | ATCCATTTGCAAATCAAAAT+GGG | - | chr1.1:24989555-24989574 | MS.gene84469:intron | 25.0% |
| !!! | ATCGTTTTTTCTTTTGTTTC+AGG | - | chr1.1:24989663-24989682 | MS.gene84469:CDS | 25.0% |
| AAGAACAATACCACTAAAGA+TGG | - | chr1.1:24989084-24989103 | MS.gene84469:CDS | 30.0% | |
| CATCCATTTGCAAATCAAAA+TGG | - | chr1.1:24989554-24989573 | MS.gene84469:intron | 30.0% | |
| TCTTTAGTGGTATTGTTCTT+AGG | + | chr1.1:24989084-24989103 | None:intergenic | 30.0% | |
| TTAGAGAATTAAATACCAGC+AGG | + | chr1.1:24989598-24989617 | None:intergenic | 30.0% | |
| TTCTCTGAATCTATGTCAAT+TGG | + | chr1.1:24988982-24989001 | None:intergenic | 30.0% | |
| AAAACAAATTCATGTCCTGC+TGG | - | chr1.1:24989580-24989599 | MS.gene84469:CDS | 35.0% | |
| AACAATACCACTAAAGATGG+TGG | - | chr1.1:24989087-24989106 | MS.gene84469:CDS | 35.0% | |
| AAGCAGAGTTTGAAGAAGAA+AGG | - | chr1.1:24989873-24989892 | MS.gene84469:CDS | 35.0% | |
| CTGAATCTATGTCAATTGGT+TGG | + | chr1.1:24988978-24988997 | None:intergenic | 35.0% | |
| CTTAACTGAGTCAGTTGAAT+CGG | + | chr1.1:24989298-24989317 | None:intergenic | 35.0% | |
| GAAAATGGTTCAGAGTTTCA+TGG | - | chr1.1:24989155-24989174 | MS.gene84469:CDS | 35.0% | |
| GAAGATGATTTCGACTTCAA+CGG | - | chr1.1:24989252-24989271 | MS.gene84469:CDS | 35.0% | |
| GTGGTATTGTTCTTAGGAAA+AGG | + | chr1.1:24989078-24989097 | None:intergenic | 35.0% | |
| TCAATTCATTGATGCGATTG+TGG | - | chr1.1:24989692-24989711 | MS.gene84469:CDS | 35.0% | |
| TCAATTGGTTGGATCTTCAA+CGG | + | chr1.1:24988967-24988986 | None:intergenic | 35.0% | |
| TTTCTGCCGACGAAAATATA+CGG | + | chr1.1:24989810-24989829 | None:intergenic | 35.0% | |
| !! | CTTGTGTAAGTGTTGAAGAA+CGG | - | chr1.1:24989419-24989438 | MS.gene84469:CDS | 35.0% |
| !!! | CTCCCATTTTGATTTGCAAA+TGG | + | chr1.1:24989560-24989579 | None:intergenic | 35.0% |
| AGATTCAGAGAAAGCCACTA+CGG | - | chr1.1:24988990-24989009 | MS.gene84469:CDS | 40.0% | |
| ATTCCTCTTTCACCACTCTT+CGG | + | chr1.1:24990146-24990165 | None:intergenic | 40.0% | |
| CGTTCTTCAACACTTACACA+AGG | + | chr1.1:24989421-24989440 | None:intergenic | 40.0% | |
| GAAATGAACCAGTTTCGAAG+TGG | - | chr1.1:24989022-24989041 | MS.gene84469:CDS | 40.0% | |
| GAAGTCGAAATCATCTTCGT+CGG | + | chr1.1:24989250-24989269 | None:intergenic | 40.0% | |
| GCTGAAAAGCTTCAATCTCT+TGG | - | chr1.1:24989523-24989542 | MS.gene84469:intron | 40.0% | |
| GGATAGTGATTCTGGTGAAT+TGG | - | chr1.1:24990019-24990038 | MS.gene84469:CDS | 40.0% | |
| TTCATTGATGCGATTGTGGA+AGG | - | chr1.1:24989696-24989715 | MS.gene84469:CDS | 40.0% | |
| ! | AATACCACTAAAGATGGTGG+TGG | - | chr1.1:24989090-24989109 | MS.gene84469:CDS | 40.0% |
| ! | CGATTCAACTGACTCAGTTA+AGG | - | chr1.1:24989296-24989315 | MS.gene84469:CDS | 40.0% |
| ! | GTATATTTTCGTCGGCAGAA+AGG | - | chr1.1:24989809-24989828 | MS.gene84469:intron | 40.0% |
| ! | TCGCTTCCGTATATTTTCGT+CGG | - | chr1.1:24989801-24989820 | MS.gene84469:intron | 40.0% |
| !! | GGTGAATTGGAGCTGATTTT+TGG | - | chr1.1:24990032-24990051 | MS.gene84469:CDS | 40.0% |
| !! | TGGATTAGCTTCTTTGCTGA+AGG | - | chr1.1:24990175-24990194 | MS.gene84469:CDS | 40.0% |
| !!! | ATTGGAGCTGATTTTTGGTG+AGG | - | chr1.1:24990037-24990056 | MS.gene84469:CDS | 40.0% |
| AAACCGAAGAGTGGTGAAAG+AGG | - | chr1.1:24990140-24990159 | MS.gene84469:CDS | 45.0% | |
| AACTGAGTCAGTTGAATCGG+TGG | + | chr1.1:24989295-24989314 | None:intergenic | 45.0% | |
| ATGAACCAGTTTCGAAGTGG+AGG | - | chr1.1:24989025-24989044 | MS.gene84469:CDS | 45.0% | |
| ATTTCGAACCAGTTCCGTAG+TGG | + | chr1.1:24989007-24989026 | None:intergenic | 45.0% | |
| CTCTGTTTGCTTGGCGAAAA+TGG | - | chr1.1:24989140-24989159 | MS.gene84469:CDS | 45.0% | |
| GAAAGAGGAATGAAGGTGAC+TGG | - | chr1.1:24990155-24990174 | MS.gene84469:CDS | 45.0% | |
| GAGTGGTGAAAGAGGAATGA+AGG | - | chr1.1:24990148-24990167 | MS.gene84469:CDS | 45.0% | |
| GCGATTACATGTTAGCGAAG+TGG | - | chr1.1:24989922-24989941 | MS.gene84469:CDS | 45.0% | |
| TTCAACCTCCACTTCGAAAC+TGG | + | chr1.1:24989033-24989052 | None:intergenic | 45.0% | |
| TTTCGAAGTGGAGGTTGAAG+AGG | - | chr1.1:24989034-24989053 | MS.gene84469:CDS | 45.0% | |
| ! | TAGCGTTGAAACAGTTGCAG+CGG | + | chr1.1:24989221-24989240 | None:intergenic | 45.0% |
| ! | TTTTCGTCGGCAGAAAGGAA+CGG | - | chr1.1:24989814-24989833 | MS.gene84469:intron | 45.0% |
| !! | GGTGGTGGAAACAGTTTCAT+CGG | - | chr1.1:24989992-24990011 | MS.gene84469:CDS | 45.0% |
| ACCACCACCACCATCTTTAG+TGG | + | chr1.1:24989097-24989116 | None:intergenic | 50.0% | |
| AGAGAAAGCCACTACGGAAC+TGG | - | chr1.1:24988996-24989015 | MS.gene84469:CDS | 50.0% | |
| ATGTAATCGCGCTTCCTCCA+CGG | + | chr1.1:24989912-24989931 | None:intergenic | 50.0% | |
| GGAAACAGTTTCATCGGAGG+TGG | - | chr1.1:24989998-24990017 | MS.gene84469:CDS | 50.0% | |
| GGAACCAAGCTCTGTTTGCT+TGG | - | chr1.1:24989131-24989150 | MS.gene84469:CDS | 50.0% | |
| GGTGGAAACAGTTTCATCGG+AGG | - | chr1.1:24989995-24990014 | MS.gene84469:CDS | 50.0% | |
| TCGGAGGTGGATAGTGATTC+TGG | - | chr1.1:24990011-24990030 | MS.gene84469:CDS | 50.0% | |
| TTCGCCAAGCAAACAGAGCT+TGG | + | chr1.1:24989138-24989157 | None:intergenic | 50.0% | |
| !! | ACCACTAAAGATGGTGGTGG+TGG | - | chr1.1:24989093-24989112 | MS.gene84469:CDS | 50.0% |
| !! | ACTAAAGATGGTGGTGGTGG+TGG | - | chr1.1:24989096-24989115 | MS.gene84469:CDS | 50.0% |
| AAAGCAAGTCTCCGATGCGG+CGG | - | chr1.1:24989968-24989987 | MS.gene84469:CDS | 55.0% | |
| AAGGAATGCATGTTCCGCCG+TGG | - | chr1.1:24989892-24989911 | MS.gene84469:CDS | 55.0% | |
| AGCGAAGTGGATCTCTCCGT+CGG | - | chr1.1:24989935-24989954 | MS.gene84469:CDS | 55.0% | |
| CAGTTGCAGCGGTTACGAGA+CGG | + | chr1.1:24989210-24989229 | None:intergenic | 55.0% | |
| CGAGACGGTGGTTGAAGTTG+CGG | + | chr1.1:24989195-24989214 | None:intergenic | 55.0% | |
| GCAGATCGTCACCGTCATGT+CGG | - | chr1.1:24989842-24989861 | MS.gene84469:intron | 55.0% | |
| GCCAAAGCAAGTCTCCGATG+CGG | - | chr1.1:24989965-24989984 | MS.gene84469:CDS | 55.0% | |
| GGTGGTTGAAGTTGCGGTTG+CGG | + | chr1.1:24989189-24989208 | None:intergenic | 55.0% | |
| TGGTGAGGAGAAAGCTTCGC+CGG | - | chr1.1:24990052-24990071 | MS.gene84469:CDS | 55.0% | |
| TTCGCCGGAGGAGGTAGTTA+CGG | - | chr1.1:24990067-24990086 | MS.gene84469:CDS | 55.0% | |
| !! | TGGTGGTGGAGTTGCTGAGT+TGG | - | chr1.1:24989110-24989129 | MS.gene84469:CDS | 55.0% |
| CCACTCTTCGGTTTCACCGC+CGG | + | chr1.1:24990134-24990153 | None:intergenic | 60.0% | |
| GAATGCATGTTCCGCCGTGG+AGG | - | chr1.1:24989895-24989914 | MS.gene84469:CDS | 60.0% | |
| GAGTCCAGCGTGGCAGTTAC+CGG | - | chr1.1:24990112-24990131 | MS.gene84469:CDS | 60.0% | |
| GATCGTCACCGTCATGTCGG+AGG | - | chr1.1:24989845-24989864 | MS.gene84469:intron | 60.0% | |
| TAATCGCGCTTCCTCCACGG+CGG | + | chr1.1:24989909-24989928 | None:intergenic | 60.0% | |
| TGAGGAGAAAGCTTCGCCGG+AGG | - | chr1.1:24990055-24990074 | MS.gene84469:CDS | 60.0% | |
| TGCTTTGGCCTAGCTGCCGA+CGG | + | chr1.1:24989954-24989973 | None:intergenic | 60.0% | |
| TTGCAGCGGTTACGAGACGG+TGG | + | chr1.1:24989207-24989226 | None:intergenic | 60.0% | |
| ! | GCCGCATCGGAGACTTGCTT+TGG | + | chr1.1:24989969-24989988 | None:intergenic | 60.0% |
| CCGGCGGTGAAACCGAAGAG+TGG | - | chr1.1:24990131-24990150 | MS.gene84469:CDS | 65.0% | |
| CGTCACCGTCATGTCGGAGG+CGG | - | chr1.1:24989848-24989867 | MS.gene84469:intron | 65.0% | |
| CTTCGCCGCCTCCGACATGA+CGG | + | chr1.1:24989856-24989875 | None:intergenic | 65.0% | |
| GCCGCCGTAACTACCTCCTC+CGG | + | chr1.1:24990074-24990093 | None:intergenic | 65.0% | |
| GCCGGAGGAGGTAGTTACGG+CGG | - | chr1.1:24990070-24990089 | MS.gene84469:CDS | 65.0% | |
| GGAGAAAGCTTCGCCGGAGG+AGG | - | chr1.1:24990058-24990077 | MS.gene84469:CDS | 65.0% | |
| GGATCTCTCCGTCGGCAGCT+AGG | - | chr1.1:24989943-24989962 | MS.gene84469:CDS | 65.0% | |
| TCCAGCGTGGCAGTTACCGG+CGG | - | chr1.1:24990115-24990134 | MS.gene84469:CDS | 65.0% | |
| ACCGCCGGTAACTGCCACGC+TGG | + | chr1.1:24990119-24990138 | None:intergenic | 70.0% | |
| CAGCGACGGTGAGTCCAGCG+TGG | - | chr1.1:24990102-24990121 | MS.gene84469:CDS | 70.0% | |
| GCAAGTCTCCGATGCGGCGG+CGG | - | chr1.1:24989971-24989990 | MS.gene84469:CDS | 70.0% | |
| TTCCACCACCGCCGCCGCAT+CGG | + | chr1.1:24989982-24990001 | None:intergenic | 70.0% | |
| AGTCTCCGATGCGGCGGCGG+TGG | - | chr1.1:24989974-24989993 | MS.gene84469:CDS | 75.0% | |
| GGCGGCGACAGCGACAGCGA+CGG | - | chr1.1:24990088-24990107 | MS.gene84469:CDS | 75.0% | |
| ! | CTCCGATGCGGCGGCGGTGG+TGG | - | chr1.1:24989977-24989996 | MS.gene84469:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 24988958 | 24990208 | 24988958 | ID=MS.gene84469 |
| chr1.1 | mRNA | 24988958 | 24990208 | 24988958 | ID=MS.gene84469.t1;Parent=MS.gene84469 |
| chr1.1 | exon | 24989849 | 24990208 | 24989849 | ID=MS.gene84469.t1.exon1;Parent=MS.gene84469.t1 |
| chr1.1 | CDS | 24989849 | 24990208 | 24989849 | ID=cds.MS.gene84469.t1;Parent=MS.gene84469.t1 |
| chr1.1 | exon | 24989565 | 24989757 | 24989565 | ID=MS.gene84469.t1.exon2;Parent=MS.gene84469.t1 |
| chr1.1 | CDS | 24989565 | 24989757 | 24989565 | ID=cds.MS.gene84469.t1;Parent=MS.gene84469.t1 |
| chr1.1 | exon | 24988958 | 24989481 | 24988958 | ID=MS.gene84469.t1.exon3;Parent=MS.gene84469.t1 |
| chr1.1 | CDS | 24988958 | 24989481 | 24988958 | ID=cds.MS.gene84469.t1;Parent=MS.gene84469.t1 |
| Gene Sequence |
| Protein sequence |
