Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85907.t1 | XP_003613966.1 | 98.9 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 2.40E-94 | 354.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85907.t1 | Q9M015 | 49.4 | 166 | 81 | 1 | 15 | 180 | 8 | 170 | 1.2e-44 | 181.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85907.t1 | G7JWQ2 | 98.9 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 1.8e-94 | 354.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95675 | MS.gene85907 | PPI |
| MS.gene85907 | MS.gene33453 | PPI |
| MS.gene85907 | MS.gene069002 | PPI |
| MS.gene85907 | MS.gene052793 | PPI |
| MS.gene85907 | MS.gene071033 | PPI |
| MS.gene85907 | MS.gene93374 | PPI |
| MS.gene99505 | MS.gene85907 | PPI |
| MS.gene33706 | MS.gene85907 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85907.t1 | MTR_5g043190 | 98.889 | 180 | 2 | 0 | 1 | 180 | 1 | 180 | 4.20e-129 | 360 |
| MS.gene85907.t1 | MTR_4g109140 | 64.641 | 181 | 56 | 2 | 1 | 180 | 1 | 174 | 1.89e-81 | 239 |
| MS.gene85907.t1 | MTR_4g014490 | 51.205 | 166 | 78 | 1 | 15 | 180 | 8 | 170 | 8.94e-60 | 184 |
| MS.gene85907.t1 | MTR_7g070000 | 50.000 | 180 | 80 | 2 | 1 | 180 | 1 | 170 | 9.13e-60 | 184 |
| MS.gene85907.t1 | MTR_7g108775 | 38.554 | 83 | 49 | 2 | 63 | 144 | 33 | 114 | 3.35e-14 | 67.0 |
| MS.gene85907.t1 | MTR_7g108775 | 38.554 | 83 | 49 | 2 | 63 | 144 | 33 | 114 | 4.43e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85907.t1 | AT2G03350 | 75.141 | 177 | 42 | 1 | 1 | 177 | 1 | 175 | 1.47e-95 | 275 |
| MS.gene85907.t1 | AT5G37070 | 48.889 | 180 | 82 | 2 | 1 | 180 | 1 | 170 | 4.74e-61 | 187 |
| MS.gene85907.t1 | AT3G08890 | 48.333 | 180 | 83 | 2 | 1 | 180 | 1 | 170 | 1.95e-59 | 183 |
| MS.gene85907.t1 | AT3G08890 | 48.333 | 180 | 83 | 2 | 1 | 180 | 1 | 170 | 1.95e-59 | 183 |
| MS.gene85907.t1 | AT5G01610 | 49.398 | 166 | 81 | 1 | 15 | 180 | 8 | 170 | 8.05e-59 | 181 |
| MS.gene85907.t1 | AT5G01610 | 49.398 | 166 | 81 | 1 | 15 | 180 | 8 | 170 | 8.05e-59 | 181 |
| MS.gene85907.t1 | AT5G16380 | 28.125 | 128 | 88 | 3 | 49 | 174 | 19 | 144 | 1.41e-13 | 66.2 |
| MS.gene85907.t1 | AT4G02370 | 29.703 | 101 | 67 | 2 | 64 | 163 | 35 | 132 | 2.75e-13 | 64.7 |
| MS.gene85907.t1 | AT1G02816 | 25.893 | 112 | 77 | 3 | 64 | 172 | 35 | 143 | 4.36e-13 | 64.3 |
| MS.gene85907.t1 | AT4G02360 | 32.222 | 90 | 59 | 2 | 63 | 151 | 31 | 119 | 1.28e-11 | 60.1 |
Find 45 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACAAATCTGATAAGATT+TGG | 0.265998 | 5.3:-30835643 | MS.gene85907:CDS |
| GGGAAAGCTTTCACAAATAG+AGG | 0.335889 | 5.3:-30835720 | MS.gene85907:CDS |
| TGAAAACAAAAGTTCTTGTA+TGG | 0.338172 | 5.3:-30835694 | MS.gene85907:CDS |
| AAAGTGGCAAGCTTGAAAAT+TGG | 0.360487 | 5.3:-30838200 | MS.gene85907:CDS |
| TTACAAATCTGATAAGATTT+GGG | 0.365699 | 5.3:-30835642 | MS.gene85907:CDS |
| AAAAGTTCTTGTATGGGTTA+AGG | 0.386610 | 5.3:-30835687 | MS.gene85907:CDS |
| AAATTGGACTTGGAGATTCA+TGG | 0.412387 | 5.3:-30838184 | MS.gene85907:CDS |
| TAGTTTGTTGAAAACCCATT+TGG | 0.430521 | 5.3:+30836645 | None:intergenic |
| TGATACTCTAATAGCATCTC+GGG | 0.437935 | 5.3:+30835571 | None:intergenic |
| TTGTACTCTCTAAGGAGATC+TGG | 0.445557 | 5.3:+30835899 | None:intergenic |
| GGGTCAAAGGTGTTCTTACA+AGG | 0.446111 | 5.3:-30835742 | MS.gene85907:CDS |
| GGTGTATCGTAAGCATCCTT+TGG | 0.469228 | 5.3:+30835593 | None:intergenic |
| TGCATGTGAGGTCAGCTTCA+AGG | 0.469233 | 5.3:-30835792 | MS.gene85907:CDS |
| CTGTACTGCGATATGCAACC+CGG | 0.471192 | 5.3:-30835763 | MS.gene85907:CDS |
| CTGTTGAAGAGAAGGCCAAA+TGG | 0.472733 | 5.3:-30836660 | MS.gene85907:CDS |
| CTGATACTCTAATAGCATCT+CGG | 0.477645 | 5.3:+30835570 | None:intergenic |
| TGTTGAAGAGAAGGCCAAAT+GGG | 0.480692 | 5.3:-30836659 | MS.gene85907:CDS |
| GCGGTAAATTGTACTCTCTA+AGG | 0.485901 | 5.3:+30835891 | None:intergenic |
| GCAAGCTTGAAAATTGGACT+TGG | 0.490390 | 5.3:-30838194 | MS.gene85907:CDS |
| CTCAAGCACTGTTGAAGAGA+AGG | 0.492131 | 5.3:-30836668 | MS.gene85907:CDS |
| GAGAGTACAATTTACCGCTC+GGG | 0.496719 | 5.3:-30835886 | MS.gene85907:CDS |
| GTAGACAATCAGCTTACCCT+TGG | 0.505031 | 5.3:+30835823 | None:intergenic |
| TGTAAGAACACCTTTGACCC+GGG | 0.515527 | 5.3:+30835745 | None:intergenic |
| GATAAGATTTGGGTTACTGC+TGG | 0.516200 | 5.3:-30835632 | MS.gene85907:CDS |
| CCCGCAGGTAAGCCACAGAA+AGG | 0.517734 | 5.3:-30835926 | MS.gene85907:intron |
| GAAAACAAAAGTTCTTGTAT+GGG | 0.524444 | 5.3:-30835693 | MS.gene85907:CDS |
| AGAGAGTACAATTTACCGCT+CGG | 0.533097 | 5.3:-30835887 | MS.gene85907:CDS |
| CGATATGCAACCCGGGTCAA+AGG | 0.539134 | 5.3:-30835755 | MS.gene85907:CDS |
| TTGTAAGAACACCTTTGACC+CGG | 0.550149 | 5.3:+30835744 | None:intergenic |
| GGAGAAAGCTCTCACTAAAG+TGG | 0.571492 | 5.3:-30838216 | MS.gene85907:CDS |
| CTACTTACCATCTGCATGTG+AGG | 0.574237 | 5.3:-30835804 | MS.gene85907:CDS |
| CTGCTGGTGTTAAGAAGTCA+AGG | 0.578489 | 5.3:-30835616 | MS.gene85907:CDS |
| GTGACAAGTGTGACAGTAGA+GGG | 0.581696 | 5.3:-30835665 | MS.gene85907:CDS |
| GTCAAAGGTGTTCTTACAAG+GGG | 0.598086 | 5.3:-30835740 | MS.gene85907:CDS |
| GGAAAGCTTTCACAAATAGA+GGG | 0.603339 | 5.3:-30835719 | MS.gene85907:CDS |
| AGATCTGGTAAACCTTTCTG+TGG | 0.605039 | 5.3:+30835914 | None:intergenic |
| AAGCTGACCTCACATGCAGA+TGG | 0.613619 | 5.3:+30835797 | None:intergenic |
| GGTGACAAGTGTGACAGTAG+AGG | 0.615714 | 5.3:-30835666 | MS.gene85907:CDS |
| TATGAGTTTGACGAAACCAA+GGG | 0.622312 | 5.3:-30835839 | MS.gene85907:CDS |
| TTATGAGTTTGACGAAACCA+AGG | 0.622560 | 5.3:-30835840 | MS.gene85907:CDS |
| TGTACTGCGATATGCAACCC+GGG | 0.646607 | 5.3:-30835762 | MS.gene85907:CDS |
| TGTTAAGAAGTCAAGGCCAA+AGG | 0.647193 | 5.3:-30835609 | MS.gene85907:CDS |
| GGTCAAAGGTGTTCTTACAA+GGG | 0.647489 | 5.3:-30835741 | MS.gene85907:CDS |
| GGTTGCATATCGCAGTACAG+AGG | 0.698294 | 5.3:+30835766 | None:intergenic |
| GATACTCTAATAGCATCTCG+GGG | 0.705257 | 5.3:+30835572 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTATTTTATAAATTAGA+GGG | + | chr5.3:30837649-30837668 | None:intergenic | 10.0% |
| !!! | TTTGTTATTTTATAAATTAG+AGG | + | chr5.3:30837650-30837669 | None:intergenic | 10.0% |
| !! | TGAGTTTAAATTTAAATATC+AGG | - | chr5.3:30837575-30837594 | MS.gene85907:intron | 15.0% |
| !!! | ACCAAAAAATAGTTTTTTTT+GGG | - | chr5.3:30836342-30836361 | MS.gene85907:intron | 15.0% |
| !!! | TTTGGGTTATATTAAAAAAA+TGG | - | chr5.3:30836359-30836378 | MS.gene85907:intron | 15.0% |
| !!! | TTTTTTTCTTTCTAAATCAT+AGG | - | chr5.3:30836596-30836615 | MS.gene85907:intron | 15.0% |
| !! | AAAAACCATATTCATTTGAA+TGG | - | chr5.3:30837023-30837042 | MS.gene85907:intron | 20.0% |
| !! | ATTGATGTTCCTTAATTTAA+GGG | + | chr5.3:30837678-30837697 | None:intergenic | 20.0% |
| !! | TAAAAGTTGTTTACATTTAC+AGG | + | chr5.3:30837799-30837818 | None:intergenic | 20.0% |
| !! | TTACAAATCTGATAAGATTT+GGG | - | chr5.3:30838138-30838157 | MS.gene85907:CDS | 20.0% |
| !!! | ACCCAAAAAAAACTATTTTT+TGG | + | chr5.3:30836346-30836365 | None:intergenic | 20.0% |
| !!! | ATACATTTTATTACGCTTTA+TGG | + | chr5.3:30836993-30837012 | None:intergenic | 20.0% |
| !!! | ATTGAGATATTTTTTAGGTT+TGG | - | chr5.3:30836439-30836458 | MS.gene85907:intron | 20.0% |
| !!! | ATTTTGCAAAACAATTCATT+TGG | - | chr5.3:30836143-30836162 | MS.gene85907:intron | 20.0% |
| !!! | GACCAAAAAATAGTTTTTTT+TGG | - | chr5.3:30836341-30836360 | MS.gene85907:intron | 20.0% |
| !!! | GCTAAATATGTATTGATTTA+AGG | + | chr5.3:30836104-30836123 | None:intergenic | 20.0% |
| !!! | TATTAAAAAAATGGCCTTTT+TGG | - | chr5.3:30836368-30836387 | MS.gene85907:intron | 20.0% |
| !!! | TTGAGATTGAGATATTTTTT+AGG | - | chr5.3:30836434-30836453 | MS.gene85907:intron | 20.0% |
| !!! | TTTGATGTTTCTTTAGTTTA+GGG | - | chr5.3:30836265-30836284 | MS.gene85907:intron | 20.0% |
| !!! | TTTTGATGTTTCTTTAGTTT+AGG | - | chr5.3:30836264-30836283 | MS.gene85907:intron | 20.0% |
| ! | AAATCAATTGTAGAGACAAA+AGG | + | chr5.3:30836077-30836096 | None:intergenic | 25.0% |
| ! | AATTGAAACTTTCCATGAAA+AGG | + | chr5.3:30835788-30835807 | None:intergenic | 25.0% |
| ! | ATCAAAGGATACAGAAAAAT+GGG | + | chr5.3:30836502-30836521 | None:intergenic | 25.0% |
| ! | ATTGAAACTTTCCATGAAAA+GGG | + | chr5.3:30835787-30835806 | None:intergenic | 25.0% |
| ! | GAAAACAAAAGTTCTTGTAT+GGG | - | chr5.3:30838087-30838106 | MS.gene85907:intron | 25.0% |
| ! | GAAAATGACTTCATTCATTT+AGG | - | chr5.3:30836661-30836680 | MS.gene85907:CDS | 25.0% |
| ! | GACATTTAGAAATAACTTCA+TGG | + | chr5.3:30836781-30836800 | None:intergenic | 25.0% |
| ! | GATTGATGTTCCTTAATTTA+AGG | + | chr5.3:30837679-30837698 | None:intergenic | 25.0% |
| ! | GTTACAAATCTGATAAGATT+TGG | - | chr5.3:30838137-30838156 | MS.gene85907:CDS | 25.0% |
| ! | TATTCCTCAAAGATTTGAAT+AGG | - | chr5.3:30835904-30835923 | MS.gene85907:CDS | 25.0% |
| ! | TGAAAACAAAAGTTCTTGTA+TGG | - | chr5.3:30838086-30838105 | MS.gene85907:intron | 25.0% |
| ! | TTCATGGAAAGTTTCAATTT+GGG | - | chr5.3:30835789-30835808 | MS.gene85907:CDS | 25.0% |
| ! | TTCCATAAATGAATATGCAA+TGG | - | chr5.3:30836296-30836315 | MS.gene85907:intron | 25.0% |
| ! | TTTCAACAAACTAAAAGGTA+TGG | - | chr5.3:30837145-30837164 | MS.gene85907:intron | 25.0% |
| ! | TTTCATGGAAAGTTTCAATT+TGG | - | chr5.3:30835788-30835807 | MS.gene85907:CDS | 25.0% |
| !! | ATTCAAATCTTTGAGGAATA+GGG | + | chr5.3:30835904-30835923 | None:intergenic | 25.0% |
| !! | CAATTTGATTCCTCTAAAAA+TGG | + | chr5.3:30835951-30835970 | None:intergenic | 25.0% |
| !! | TATTCAAATCTTTGAGGAAT+AGG | + | chr5.3:30835905-30835924 | None:intergenic | 25.0% |
| !! | TCATAACAGATTATGTTTTG+AGG | + | chr5.3:30837926-30837945 | None:intergenic | 25.0% |
| !! | TTTTATTACGCTTTATGGTT+TGG | + | chr5.3:30836988-30837007 | None:intergenic | 25.0% |
| !!! | ACAATGTTTTTGCTGATATA+AGG | - | chr5.3:30837069-30837088 | MS.gene85907:intron | 25.0% |
| !!! | ATTGTTTGTTTTAAAACTGC+AGG | + | chr5.3:30836697-30836716 | None:intergenic | 25.0% |
| !!! | GTAGATAATTTATTTTGTCC+TGG | - | chr5.3:30836639-30836658 | MS.gene85907:intron | 25.0% |
| !!! | TATTTTTTAGGTTTGGATTG+TGG | - | chr5.3:30836446-30836465 | MS.gene85907:intron | 25.0% |
| !!! | TTGTTTGTTTTAAAACTGCA+GGG | + | chr5.3:30836696-30836715 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTCCCTTTAATG+TGG | - | chr5.3:30835739-30835758 | MS.gene85907:CDS | 25.0% |
| AAACAAGCTTAGTATGTGTT+TGG | + | chr5.3:30836192-30836211 | None:intergenic | 30.0% | |
| ACTCAAAAAAGCCACATTAA+AGG | + | chr5.3:30835753-30835772 | None:intergenic | 30.0% | |
| AGCAGTCTATTTGAATCAAT+TGG | + | chr5.3:30837231-30837250 | None:intergenic | 30.0% | |
| ATCTCCTATTCAAATCTTTG+AGG | + | chr5.3:30835911-30835930 | None:intergenic | 30.0% | |
| CAAATCAGTCCCTTAAATTA+AGG | - | chr5.3:30837666-30837685 | MS.gene85907:intron | 30.0% | |
| CAAGTCAGTTATTATTTCAG+TGG | - | chr5.3:30837758-30837777 | MS.gene85907:intron | 30.0% | |
| CTCAAAAAAGCCACATTAAA+GGG | + | chr5.3:30835752-30835771 | None:intergenic | 30.0% | |
| GACACATGAAAAACTTATTG+CGG | + | chr5.3:30837350-30837369 | None:intergenic | 30.0% | |
| GACTTCATTCATTTAGGAAT+TGG | - | chr5.3:30836667-30836686 | MS.gene85907:CDS | 30.0% | |
| GATCAAAGGATACAGAAAAA+TGG | + | chr5.3:30836503-30836522 | None:intergenic | 30.0% | |
| GGGAAAGTGAAATATGTAAA+AGG | - | chr5.3:30836529-30836548 | MS.gene85907:intron | 30.0% | |
| GTCCATTGCATATTCATTTA+TGG | + | chr5.3:30836301-30836320 | None:intergenic | 30.0% | |
| TAGGAGATTAAGTATGTGTT+TGG | - | chr5.3:30835923-30835942 | MS.gene85907:intron | 30.0% | |
| TATCAGGTTAATAAGCATGT+TGG | - | chr5.3:30837591-30837610 | MS.gene85907:intron | 30.0% | |
| TGTAAAAGGACCTGAAAAAT+TGG | - | chr5.3:30836543-30836562 | MS.gene85907:intron | 30.0% | |
| TTAGTATGTGTTTGGTTATG+CGG | + | chr5.3:30836184-30836203 | None:intergenic | 30.0% | |
| ! | AAAAGTTCTTGTATGGGTTA+AGG | - | chr5.3:30838093-30838112 | MS.gene85907:intron | 30.0% |
| ! | AGAGGAATCAAATTGATTCT+TGG | - | chr5.3:30835956-30835975 | MS.gene85907:intron | 30.0% |
| ! | TCTGAAAGATCCAATTTTTC+AGG | + | chr5.3:30836556-30836575 | None:intergenic | 30.0% |
| ! | TGGGTTTTCAACAAACTAAA+AGG | - | chr5.3:30837140-30837159 | MS.gene85907:intron | 30.0% |
| ! | TTTGAAACAACCTTGGATTT+GGG | - | chr5.3:30835847-30835866 | MS.gene85907:CDS | 30.0% |
| ! | TTTTTCTGTATCCTTTGATC+TGG | - | chr5.3:30836503-30836522 | MS.gene85907:intron | 30.0% |
| !! | AATGAATGAAGTCATTTTCC+AGG | + | chr5.3:30836660-30836679 | None:intergenic | 30.0% |
| !! | TAGTTTGTTGAAAACCCATT+TGG | + | chr5.3:30837138-30837157 | None:intergenic | 30.0% |
| !! | TCTGTTTTGGATGTGAAATT+GGG | - | chr5.3:30836232-30836251 | MS.gene85907:intron | 30.0% |
| !! | TTCTGTTTTGGATGTGAAAT+TGG | - | chr5.3:30836231-30836250 | MS.gene85907:intron | 30.0% |
| !!! | ACATACTAAGCTTGTTTTAG+TGG | - | chr5.3:30836195-30836214 | MS.gene85907:intron | 30.0% |
| !!! | TGTTTGTTTTAAAACTGCAG+GGG | + | chr5.3:30836695-30836714 | None:intergenic | 30.0% |
| AAAGTGGCAAGCTTGAAAAT+TGG | - | chr5.3:30835580-30835599 | MS.gene85907:CDS | 35.0% | |
| AAATTGGACTTGGAGATTCA+TGG | - | chr5.3:30835596-30835615 | MS.gene85907:CDS | 35.0% | |
| AATCTCAAGATAAAGCTGGA+AGG | + | chr5.3:30836422-30836441 | None:intergenic | 35.0% | |
| AGAGAAAATGTGTCAGTGAA+AGG | + | chr5.3:30837398-30837417 | None:intergenic | 35.0% | |
| AGTAACACTAACACCAAACA+GGG | + | chr5.3:30837049-30837068 | None:intergenic | 35.0% | |
| CTGATACTCTAATAGCATCT+CGG | + | chr5.3:30838213-30838232 | None:intergenic | 35.0% | |
| GAAAGAATGCATAAACTCAC+TGG | + | chr5.3:30837193-30837212 | None:intergenic | 35.0% | |
| GAGAAAATGTGTCAGTGAAA+GGG | + | chr5.3:30837397-30837416 | None:intergenic | 35.0% | |
| GGAAAGCTTTCACAAATAGA+GGG | - | chr5.3:30838061-30838080 | MS.gene85907:intron | 35.0% | |
| GGTTTAGAGAAGAGTAAACT+CGG | + | chr5.3:30837492-30837511 | None:intergenic | 35.0% | |
| GTTGGTCCTTGAAATTGTAA+GGG | - | chr5.3:30837609-30837628 | MS.gene85907:intron | 35.0% | |
| TAGTAACACTAACACCAAAC+AGG | + | chr5.3:30837050-30837069 | None:intergenic | 35.0% | |
| TATGAGTTTGACGAAACCAA+GGG | - | chr5.3:30837941-30837960 | MS.gene85907:intron | 35.0% | |
| TCTCAATCTCAAGATAAAGC+TGG | + | chr5.3:30836426-30836445 | None:intergenic | 35.0% | |
| TGATACTCTAATAGCATCTC+GGG | + | chr5.3:30838212-30838231 | None:intergenic | 35.0% | |
| TGTTGGTCCTTGAAATTGTA+AGG | - | chr5.3:30837608-30837627 | MS.gene85907:intron | 35.0% | |
| TTATGAGTTTGACGAAACCA+AGG | - | chr5.3:30837940-30837959 | MS.gene85907:intron | 35.0% | |
| TTCAACACAGACAACCAAAA+AGG | + | chr5.3:30836385-30836404 | None:intergenic | 35.0% | |
| TTCTCAATCAAAGATGTGAC+TGG | - | chr5.3:30837706-30837725 | MS.gene85907:intron | 35.0% | |
| TTTGGTTGTCTGTGTTGAAT+GGG | - | chr5.3:30836386-30836405 | MS.gene85907:intron | 35.0% | |
| ! | AAGTATCGTCATGCTAAACT+AGG | - | chr5.3:30837251-30837270 | MS.gene85907:intron | 35.0% |
| ! | GTTTGAAACAACCTTGGATT+TGG | - | chr5.3:30835846-30835865 | MS.gene85907:CDS | 35.0% |
| ! | TATTACGCTTTATGGTTTGG+CGG | + | chr5.3:30836985-30837004 | None:intergenic | 35.0% |
| ! | TCTCATGGAATGTTCTGTTT+TGG | - | chr5.3:30836219-30836238 | MS.gene85907:intron | 35.0% |
| ! | TTGCTTGTTTGAAACAACCT+TGG | - | chr5.3:30835840-30835859 | MS.gene85907:CDS | 35.0% |
| !! | GTGTTTGGTTCCATTTTTAG+AGG | - | chr5.3:30835938-30835957 | MS.gene85907:intron | 35.0% |
| !! | TGTTAGTTTGACCCTTTTCA+TGG | - | chr5.3:30835773-30835792 | MS.gene85907:CDS | 35.0% |
| !! | TTTTGGTTGTCTGTGTTGAA+TGG | - | chr5.3:30836385-30836404 | MS.gene85907:intron | 35.0% |
| AAACAACCTTGGATTTGGGA+TGG | - | chr5.3:30835851-30835870 | MS.gene85907:CDS | 40.0% | |
| ACAATGTGAAGAAACCAGCT+AGG | + | chr5.3:30837513-30837532 | None:intergenic | 40.0% | |
| AGATCTGGTAAACCTTTCTG+TGG | + | chr5.3:30837869-30837888 | None:intergenic | 40.0% | |
| ATAAACTCACTGGACCATCT+AGG | + | chr5.3:30837183-30837202 | None:intergenic | 40.0% | |
| CAGGGCCATTCAAATGAATA+TGG | + | chr5.3:30837031-30837050 | None:intergenic | 40.0% | |
| CATGAAAAACTTATTGCGGC+AGG | + | chr5.3:30837346-30837365 | None:intergenic | 40.0% | |
| CTAAGTTGTGTGAATGAGGT+AGG | + | chr5.3:30837374-30837393 | None:intergenic | 40.0% | |
| GATACTCTAATAGCATCTCG+GGG | + | chr5.3:30838211-30838230 | None:intergenic | 40.0% | |
| GCAAGCTTGAAAATTGGACT+TGG | - | chr5.3:30835586-30835605 | MS.gene85907:CDS | 40.0% | |
| GCGGTAAATTGTACTCTCTA+AGG | + | chr5.3:30837892-30837911 | None:intergenic | 40.0% | |
| GCTTGACCCTTACAATTTCA+AGG | + | chr5.3:30837618-30837637 | None:intergenic | 40.0% | |
| GGGAAAGCTTTCACAAATAG+AGG | - | chr5.3:30838060-30838079 | MS.gene85907:intron | 40.0% | |
| TAAACTCACTGGACCATCTA+GGG | + | chr5.3:30837182-30837201 | None:intergenic | 40.0% | |
| TACTCTTCTCTAAACCTAGC+TGG | - | chr5.3:30837496-30837515 | MS.gene85907:intron | 40.0% | |
| TGTATCCTTTGATCTGGAGA+GGG | - | chr5.3:30836509-30836528 | MS.gene85907:intron | 40.0% | |
| TGTTAAGAAGTCAAGGCCAA+AGG | - | chr5.3:30838171-30838190 | MS.gene85907:CDS | 40.0% | |
| TGTTGAAGAGAAGGCCAAAT+GGG | - | chr5.3:30837121-30837140 | MS.gene85907:intron | 40.0% | |
| TTAGAGAAGAGTAAACTCGG+AGG | + | chr5.3:30837489-30837508 | None:intergenic | 40.0% | |
| TTCATTTGAATGGCCCTGTT+TGG | - | chr5.3:30837033-30837052 | MS.gene85907:intron | 40.0% | |
| TTGGTTGTCTGTGTTGAATG+GGG | - | chr5.3:30836387-30836406 | MS.gene85907:intron | 40.0% | |
| TTGTAAGAACACCTTTGACC+CGG | + | chr5.3:30838039-30838058 | None:intergenic | 40.0% | |
| ! | AGAGAGTACAATTTACCGCT+CGG | - | chr5.3:30837893-30837912 | MS.gene85907:intron | 40.0% |
| ! | GATAAGATTTGGGTTACTGC+TGG | - | chr5.3:30838148-30838167 | MS.gene85907:CDS | 40.0% |
| ! | GCAGGTTGTCTAAAATGCAA+AGG | + | chr5.3:30837328-30837347 | None:intergenic | 40.0% |
| ! | TTGTACTCTCTAAGGAGATC+TGG | + | chr5.3:30837884-30837903 | None:intergenic | 40.0% |
| !! | GGTCAAAGGTGTTCTTACAA+GGG | - | chr5.3:30838039-30838058 | MS.gene85907:intron | 40.0% |
| !! | GTCAAAGGTGTTCTTACAAG+GGG | - | chr5.3:30838040-30838059 | MS.gene85907:intron | 40.0% |
| !!! | GCTTGTTTTAGTGGTTCTCA+TGG | - | chr5.3:30836204-30836223 | MS.gene85907:intron | 40.0% |
| !!! | GGATGTGTTTTAACCCTAGA+TGG | - | chr5.3:30837166-30837185 | MS.gene85907:intron | 40.0% |
| ACTTTCCCTCTCCAGATCAA+AGG | + | chr5.3:30836517-30836536 | None:intergenic | 45.0% | |
| AGGGCTAAGTTGTGTGAATG+AGG | + | chr5.3:30837378-30837397 | None:intergenic | 45.0% | |
| CAAGTACCATCCCAAATCCA+AGG | + | chr5.3:30835860-30835879 | None:intergenic | 45.0% | |
| CTACTTACCATCTGCATGTG+AGG | - | chr5.3:30837976-30837995 | MS.gene85907:intron | 45.0% | |
| CTGTATCCTTTGATCTGGAG+AGG | - | chr5.3:30836508-30836527 | MS.gene85907:intron | 45.0% | |
| CTGTTGAAGAGAAGGCCAAA+TGG | - | chr5.3:30837120-30837139 | MS.gene85907:intron | 45.0% | |
| GGAGAAAGCTCTCACTAAAG+TGG | - | chr5.3:30835564-30835583 | MS.gene85907:CDS | 45.0% | |
| GGTGTATCGTAAGCATCCTT+TGG | + | chr5.3:30838190-30838209 | None:intergenic | 45.0% | |
| GTAGACAATCAGCTTACCCT+TGG | + | chr5.3:30837960-30837979 | None:intergenic | 45.0% | |
| GTGACAAGTGTGACAGTAGA+GGG | - | chr5.3:30838115-30838134 | MS.gene85907:intron | 45.0% | |
| TGTAAGAACACCTTTGACCC+GGG | + | chr5.3:30838038-30838057 | None:intergenic | 45.0% | |
| ! | CTCAAGCACTGTTGAAGAGA+AGG | - | chr5.3:30837112-30837131 | MS.gene85907:intron | 45.0% |
| ! | CTGCTGGTGTTAAGAAGTCA+AGG | - | chr5.3:30838164-30838183 | MS.gene85907:CDS | 45.0% |
| ! | CTTGGATTTGGGATGGTACT+TGG | - | chr5.3:30835858-30835877 | MS.gene85907:CDS | 45.0% |
| ! | GAGAGTACAATTTACCGCTC+GGG | - | chr5.3:30837894-30837913 | MS.gene85907:intron | 45.0% |
| !! | GGGTCAAAGGTGTTCTTACA+AGG | - | chr5.3:30838038-30838057 | MS.gene85907:intron | 45.0% |
| !! | TTTTGAGGAAATAGCCCGAG+CGG | + | chr5.3:30837911-30837930 | None:intergenic | 45.0% |
| AAGCTGACCTCACATGCAGA+TGG | + | chr5.3:30837986-30838005 | None:intergenic | 50.0% | |
| ACCTTTCTGTGGCTTACCTG+CGG | + | chr5.3:30837858-30837877 | None:intergenic | 50.0% | |
| CTGTACTGCGATATGCAACC+CGG | - | chr5.3:30838017-30838036 | MS.gene85907:intron | 50.0% | |
| GGTGACAAGTGTGACAGTAG+AGG | - | chr5.3:30838114-30838133 | MS.gene85907:intron | 50.0% | |
| GGTTGCATATCGCAGTACAG+AGG | + | chr5.3:30838017-30838036 | None:intergenic | 50.0% | |
| TGCATGTGAGGTCAGCTTCA+AGG | - | chr5.3:30837988-30838007 | MS.gene85907:intron | 50.0% | |
| TGTACTGCGATATGCAACCC+GGG | - | chr5.3:30838018-30838037 | MS.gene85907:intron | 50.0% | |
| CCTTTCTGTGGCTTACCTGC+GGG | + | chr5.3:30837857-30837876 | None:intergenic | 55.0% | |
| CGATATGCAACCCGGGTCAA+AGG | - | chr5.3:30838025-30838044 | MS.gene85907:intron | 55.0% | |
| ! | AGAGTAAACTCGGAGGCGCA+TGG | + | chr5.3:30837482-30837501 | None:intergenic | 55.0% |
| CCCGCAGGTAAGCCACAGAA+AGG | - | chr5.3:30837854-30837873 | MS.gene85907:intron | 60.0% | |
| TCTGTGGCTTACCTGCGGGA+AGG | + | chr5.3:30837853-30837872 | None:intergenic | 60.0% | |
| ! | TGCTCTGAATGCCTTCCCGC+AGG | - | chr5.3:30837839-30837858 | MS.gene85907:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 30835562 | 30838240 | 30835562 | ID=MS.gene85907 |
| chr5.3 | mRNA | 30835562 | 30838240 | 30835562 | ID=MS.gene85907.t1;Parent=MS.gene85907 |
| chr5.3 | exon | 30838133 | 30838240 | 30838133 | ID=MS.gene85907.t1.exon1;Parent=MS.gene85907.t1 |
| chr5.3 | CDS | 30838133 | 30838240 | 30838133 | ID=cds.MS.gene85907.t1;Parent=MS.gene85907.t1 |
| chr5.3 | exon | 30836641 | 30836695 | 30836641 | ID=MS.gene85907.t1.exon2;Parent=MS.gene85907.t1 |
| chr5.3 | CDS | 30836641 | 30836695 | 30836641 | ID=cds.MS.gene85907.t1;Parent=MS.gene85907.t1 |
| chr5.3 | exon | 30835562 | 30835941 | 30835562 | ID=MS.gene85907.t1.exon3;Parent=MS.gene85907.t1 |
| chr5.3 | CDS | 30835562 | 30835941 | 30835562 | ID=cds.MS.gene85907.t1;Parent=MS.gene85907.t1 |
| Gene Sequence |
| Protein sequence |
