AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86276

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86276.t1 MTR_1g009620 99.562 685 3 0 1 685 1 685 0.0 1387
MS.gene86276.t1 MTR_4g008260 42.920 678 362 10 23 684 5 673 0.0 543
MS.gene86276.t1 MTR_0229s0040 97.333 225 6 0 461 685 16 240 2.04e-160 461
MS.gene86276.t1 MTR_2g041650 37.387 666 325 12 23 669 5 597 1.07e-137 417
MS.gene86276.t1 MTR_1g017910 29.141 652 419 14 19 628 14 664 4.51e-72 248
MS.gene86276.t1 MTR_1g090620 27.174 644 364 14 59 647 42 635 4.05e-67 233
MS.gene86276.t1 MTR_1g057560 25.832 631 388 11 59 654 41 626 1.09e-58 209
MS.gene86276.t1 MTR_8g021330 25.764 458 319 7 225 665 164 617 1.01e-38 152
MS.gene86276.t1 MTR_4g103540 28.698 453 279 15 226 656 253 683 1.41e-37 149
MS.gene86276.t1 MTR_5g073450 26.991 452 313 7 220 662 199 642 1.71e-37 149
MS.gene86276.t1 MTR_3g031130 27.130 446 306 5 225 662 194 628 1.77e-34 139
MS.gene86276.t1 MTR_7g026630 22.308 520 347 10 182 655 144 652 1.30e-32 134
MS.gene86276.t1 MTR_6g033310 23.828 512 342 12 188 661 231 732 8.30e-30 126
MS.gene86276.t1 MTR_7g013770 23.800 521 333 11 183 651 156 664 9.62e-30 125
MS.gene86276.t1 MTR_3g025900 24.609 447 305 9 228 663 187 612 5.66e-28 119
MS.gene86276.t1 MTR_4g062330 24.041 391 272 5 248 620 196 579 4.83e-26 114
MS.gene86276.t1 MTR_1g067460 22.835 508 342 11 183 651 103 599 1.93e-25 112
MS.gene86276.t1 MTR_1g117090 22.961 466 305 14 227 647 206 662 7.29e-25 110
MS.gene86276.t1 MTR_5g073460 22.951 488 340 11 179 643 208 682 6.84e-24 107
MS.gene86276.t1 MTR_2g096230 22.601 469 313 10 183 618 101 552 1.45e-22 102
MS.gene86276.t1 MTR_1g067480 22.105 475 316 11 183 616 105 566 6.46e-21 97.8
MS.gene86276.t1 MTR_5g074130 23.038 395 280 8 265 654 301 676 4.04e-19 92.4
MS.gene86276.t1 MTR_5g073620 25.180 278 174 8 274 538 339 595 1.42e-15 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86276.t1 AT4G31540 73.971 680 163 3 19 685 9 687 0.0 1026
MS.gene86276.t1 AT1G51640 40.429 653 340 12 21 654 6 628 2.17e-158 472
MS.gene86276.t1 AT5G03540 27.204 658 444 13 19 665 4 637 1.23e-65 228
MS.gene86276.t1 AT5G03540 25.731 684 447 12 19 665 4 663 1.12e-61 218
MS.gene86276.t1 AT5G03540 28.726 463 309 7 211 665 73 522 4.92e-55 197
MS.gene86276.t1 AT5G52340 24.812 665 407 13 22 647 7 617 1.09e-54 198
MS.gene86276.t1 AT5G52350 26.350 463 296 13 211 654 142 578 1.14e-41 160
MS.gene86276.t1 AT1G72470 26.577 444 304 8 225 651 181 619 4.43e-39 153
MS.gene86276.t1 AT5G13990 25.721 451 315 10 209 651 241 679 4.18e-37 148
MS.gene86276.t1 AT5G50380 23.518 523 335 10 185 651 156 669 1.66e-35 143
MS.gene86276.t1 AT3G14090 24.138 435 313 7 230 651 181 611 1.16e-33 137
MS.gene86276.t1 AT1G54090 24.503 453 314 8 230 666 178 618 7.89e-33 134
MS.gene86276.t1 AT5G58430 25.234 428 311 4 225 652 199 617 9.56e-32 131
MS.gene86276.t1 AT5G13150 24.295 461 301 11 223 656 208 647 2.39e-31 130
MS.gene86276.t1 AT2G39380 24.645 422 294 7 248 655 201 612 4.54e-29 123
MS.gene86276.t1 AT1G07000 23.776 429 312 5 225 652 181 595 3.02e-27 117
MS.gene86276.t1 AT3G55150 23.633 567 393 12 107 655 68 612 1.76e-25 112
MS.gene86276.t1 AT3G29400 21.480 554 362 10 162 651 101 645 1.31e-24 109
MS.gene86276.t1 AT2G28640 21.290 465 331 6 183 622 99 553 2.05e-22 102
MS.gene86276.t1 AT3G09520 22.957 514 340 14 184 654 107 607 6.69e-22 100
MS.gene86276.t1 AT5G61010 23.097 381 258 10 292 657 274 634 1.35e-20 97.1
MS.gene86276.t1 AT5G61010 23.097 381 258 10 292 657 274 634 1.35e-20 97.1
MS.gene86276.t1 AT1G07725 20.833 384 281 5 249 622 196 566 1.41e-19 93.6
MS.gene86276.t1 AT2G28650 20.533 375 284 3 248 620 167 529 9.27e-19 90.9
MS.gene86276.t1 AT3G09530 20.126 477 329 11 183 618 101 566 1.48e-13 74.7

Find 167 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGTTCCCTTGTCAAATTT+TGG 0.197858 1.3:+10578465 None:intergenic
TTTAGGGGATTCTTGGTTAA+AGG 0.208312 1.3:-10578063 MS.gene86276:CDS
GAAAGCCGTTGAGTTAAATT+TGG 0.213271 1.3:-10578192 MS.gene86276:CDS
CAACAACTTCAATAGCTTAA+TGG 0.226864 1.3:+10578562 None:intergenic
TTGGAAACGTCAAAGCTTTC+AGG 0.249970 1.3:-10578249 MS.gene86276:CDS
TTCATGCTGCCGTGTCTTGC+AGG 0.253370 1.3:+10577660 None:intergenic
TTCATGGCTGATTCTAGTTC+TGG 0.254971 1.3:-10579625 MS.gene86276:CDS
AGTTCTGGTTGTTCTGGTTC+TGG 0.259263 1.3:-10579610 MS.gene86276:CDS
GATTCTAGTTCTGGTTGTTC+TGG 0.282340 1.3:-10579616 MS.gene86276:CDS
CACAAATTGCAGGCTATTCT+TGG 0.286540 1.3:-10578932 MS.gene86276:CDS
CCATCTGGAGGAGGAGGGTT+TGG 0.290070 1.3:+10578374 None:intergenic
GAAGGAGTTGGAGAGTCTTA+AGG 0.305952 1.3:-10579125 MS.gene86276:CDS
CGGAGTTACATGCAGAATTA+TGG 0.312582 1.3:-10577777 MS.gene86276:CDS
TTCTGTTGTTCACAAATTGC+AGG 0.312694 1.3:-10578942 MS.gene86276:CDS
CAGTTGGAGGTCATATTAAT+AGG 0.316734 1.3:-10579387 MS.gene86276:CDS
GAGTTTGCAGGCGCTGAATT+TGG 0.332672 1.3:-10578834 MS.gene86276:CDS
TAATGTGAGGGCGAGTTTGC+AGG 0.342343 1.3:-10578846 MS.gene86276:CDS
AATCCGCAGTGAGGCCGATT+CGG 0.344159 1.3:-10579432 MS.gene86276:CDS
GTCGGATTCTCTTGGTGGTC+AGG 0.344855 1.3:-10578993 MS.gene86276:CDS
AACAACTTCAATAGCTTAAT+GGG 0.349005 1.3:+10578563 None:intergenic
CATTAAGCTATTGAAGTTGT+TGG 0.353415 1.3:-10578561 MS.gene86276:CDS
AGGCTGTGGTGCCTGTTTAC+CGG 0.359605 1.3:-10577797 MS.gene86276:CDS
AGCTCAGTGGGGAAAGCATT+TGG 0.365875 1.3:-10578753 MS.gene86276:CDS
AAGGAGTTGGAGAGTCTTAA+GGG 0.365999 1.3:-10579124 MS.gene86276:CDS
GTGATAAAGCTCACCAATCT+TGG 0.366743 1.3:+10578344 None:intergenic
GGGATCGCAGAATGATGATT+TGG 0.371178 1.3:-10579104 MS.gene86276:CDS
CCGCAGCTTAGTGGAAAGTA+TGG 0.373854 1.3:-10577633 MS.gene86276:CDS
GCGTGCCACTGCTCGTGATC+TGG 0.374871 1.3:-10577934 MS.gene86276:CDS
ATCCGCAGTGAGGCCGATTC+GGG 0.379723 1.3:-10579431 MS.gene86276:CDS
ATTTGAAAGGGACAAAGCTT+GGG 0.383699 1.3:-10578091 MS.gene86276:CDS
TAAGAATTTGAAGAAGGAGT+TGG 0.385869 1.3:-10579137 MS.gene86276:CDS
GCCTGCGGCTGCTGTGTTGA+AGG 0.386786 1.3:-10579356 MS.gene86276:CDS
CAATATTCTTGCGTGATAGC+TGG 0.389729 1.3:-10578010 MS.gene86276:CDS
TGAGTATTTAGAAGATAATT+CGG 0.403228 1.3:-10579179 MS.gene86276:CDS
TGCATGTAACTCCGGTAAAC+AGG 0.407641 1.3:+10577786 None:intergenic
TGGCTTGTTAGATGCTGCTT+TGG 0.407742 1.3:-10579077 MS.gene86276:CDS
GCCAAGGTTAGATGAGATTA+GGG 0.409607 1.3:-10579473 MS.gene86276:CDS
ATAAATTAGAGAATGAGTTT+AGG 0.409738 1.3:-10579054 MS.gene86276:CDS
CTTAGTGGAAAGTATGGAAA+TGG 0.411047 1.3:-10577627 MS.gene86276:CDS
AGATAATTCGGTCGCAGATC+AGG 0.411365 1.3:-10579167 MS.gene86276:CDS
CATTTGAAAGGGACAAAGCT+TGG 0.412828 1.3:-10578092 MS.gene86276:CDS
GATTACTGCAATAAACTCTT+GGG 0.421657 1.3:-10578320 MS.gene86276:CDS
TGATTACTGCAATAAACTCT+TGG 0.423599 1.3:-10578321 MS.gene86276:CDS
TTTCTGGGAACTTCTGGTTC+AGG 0.424206 1.3:-10578411 MS.gene86276:CDS
GGCCAAGGTTAGATGAGATT+AGG 0.427126 1.3:-10579474 MS.gene86276:CDS
TCCTGATCATTCACCGAAGT+TGG 0.433828 1.3:-10578268 MS.gene86276:CDS
GGATCCGCGGATTGATCTGC+CGG 0.438356 1.3:-10579293 MS.gene86276:CDS
TCCAACTTCGGTGAATGATC+AGG 0.439211 1.3:+10578267 None:intergenic
TGATCTGCCGGGTTATTTGT+CGG 0.443522 1.3:-10579281 MS.gene86276:CDS
CATGATCCAACCTGACTGCT+TGG 0.451378 1.3:+10577863 None:intergenic
CCTATGTTGTCGGATTCTCT+TGG 0.451569 1.3:-10579001 MS.gene86276:CDS
CATGCAGAATTATGGTCCCT+TGG 0.459971 1.3:-10577769 MS.gene86276:CDS
AATATTCTTGCGTGATAGCT+GGG 0.460433 1.3:-10578009 MS.gene86276:CDS
GGGAAAGCATTTGGAGTTTG+CGG 0.460517 1.3:-10578744 MS.gene86276:CDS
CGTGTCTTGCAGGCTTCGGC+CGG 0.460699 1.3:+10577670 None:intergenic
ATACTTGCATTTCTTCAGTT+CGG 0.460773 1.3:-10578614 MS.gene86276:CDS
ATGAAAAGTCCGCAGCTTAG+TGG 0.461120 1.3:-10577642 MS.gene86276:CDS
CTGCCGTGTCTTGCAGGCTT+CGG 0.462821 1.3:+10577666 None:intergenic
AATTTGTGAACAACAGAAAC+AGG 0.464830 1.3:+10578947 None:intergenic
TTCGGTGAATGATCAGGACT+TGG 0.465421 1.3:+10578273 None:intergenic
ATCTGTTCAAACATTTGAAA+GGG 0.466483 1.3:-10578103 MS.gene86276:CDS
TGTGCCGCTTCCTATGTTGT+CGG 0.468282 1.3:-10579011 MS.gene86276:CDS
TTATCTTAAGAATTTGAAGA+AGG 0.471284 1.3:-10579143 MS.gene86276:CDS
GTCATATTAATAGGGCTGTT+GGG 0.473573 1.3:-10579378 MS.gene86276:CDS
AGCTTTGACGTTTCCAACTT+CGG 0.476109 1.3:+10578255 None:intergenic
CTTATCAAGAGTGTGATTGA+TGG 0.476562 1.3:-10578446 MS.gene86276:CDS
TGGGTTGGCTATTCAGTGGT+TGG 0.477912 1.3:-10579212 MS.gene86276:CDS
GATAGCTGGGGAAAGCTCCC+TGG 0.479714 1.3:-10577996 MS.gene86276:CDS
TTTGGGAGATAATTGTGGGT+TGG 0.482896 1.3:-10579227 MS.gene86276:CDS
ACACTTCCATCTGGAGGAGG+AGG 0.483237 1.3:+10578368 None:intergenic
TGATAAAGCTCACCAATCTT+GGG 0.483724 1.3:+10578345 None:intergenic
AAATTTGGAGACGTGGATCA+AGG 0.484048 1.3:-10578177 MS.gene86276:CDS
AACGATGTGTTTGAGAGGCT+TGG 0.484729 1.3:-10578686 MS.gene86276:CDS
AGATTAGGGTAAGGTTGCCT+TGG 0.485155 1.3:-10579459 MS.gene86276:CDS
AGTTGGAGGTCATATTAATA+GGG 0.488294 1.3:-10579386 MS.gene86276:CDS
TTAGACAAATCAAAGAGTGT+TGG 0.488342 1.3:-10579517 MS.gene86276:CDS
AATCTTGGGACACTTCCATC+TGG 0.494650 1.3:+10578359 None:intergenic
AGATGGAAGTGTCCCAAGAT+TGG 0.494853 1.3:-10578357 MS.gene86276:CDS
CCTTCCCTACTCAAATGTCC+AGG 0.495820 1.3:+10577978 None:intergenic
GAAGCCGTACGACGAAGATC+AGG 0.495920 1.3:+10577600 None:intergenic
GGTCATATTAATAGGGCTGT+TGG 0.496333 1.3:-10579379 MS.gene86276:CDS
GCTTGGACGCGATGTGTGGA+TGG 0.496987 1.3:-10578669 MS.gene86276:CDS
ATGTTGTCGGATTCTCTTGG+TGG 0.500048 1.3:-10578998 MS.gene86276:CDS
GGATTAGCATTAGAGAAAGC+AGG 0.500648 1.3:-10579496 MS.gene86276:CDS
GACGTGCCAGCTTATAGTGC+AGG 0.506334 1.3:-10577817 MS.gene86276:CDS
ATCAGGACTTGGGTCAGTAT+AGG 0.506827 1.3:+10578284 None:intergenic
TTATCAAGAGTGTGATTGAT+GGG 0.507996 1.3:-10578445 MS.gene86276:CDS
CATCTGTTCAAACATTTGAA+AGG 0.508888 1.3:-10578104 MS.gene86276:CDS
CATTAGAGAAAGCAGGGCCA+AGG 0.510416 1.3:-10579489 MS.gene86276:CDS
CAAGCAGTCAGGTTGGATCA+TGG 0.510449 1.3:-10577862 MS.gene86276:CDS
ATCGTTGAACAAATTGAGAC+TGG 0.511601 1.3:-10578528 MS.gene86276:CDS
CGGCCGAAGCCTGCAAGACA+CGG 0.517639 1.3:-10577669 MS.gene86276:CDS
GCTTGAGAAGTCGTTATTGT+CGG 0.519916 1.3:-10579314 MS.gene86276:CDS
AATTGCAGGCTATTCTTGGT+AGG 0.520166 1.3:-10578928 MS.gene86276:CDS
AGAGGTGTATATAGCTCAGT+GGG 0.523576 1.3:-10578765 MS.gene86276:CDS
GATGCCCTTGTGGCAGTTGG+AGG 0.525796 1.3:-10579400 MS.gene86276:CDS
CTGAAGAAATGCAAGTATAC+CGG 0.536958 1.3:+10578619 None:intergenic
CTTCTCAAAGATAGCTGCAC+AGG 0.542343 1.3:-10578642 MS.gene86276:CDS
AGTTAGAAGTTCTAATGTGA+GGG 0.543262 1.3:-10578858 MS.gene86276:CDS
CTCACTGCGGATTCAAGCCA+AGG 0.543902 1.3:+10579442 None:intergenic
ACCTTCAACACAGCAGCCGC+AGG 0.545896 1.3:+10579355 None:intergenic
GCATCTTTCTCAGCCCGAAT+CGG 0.546803 1.3:+10579418 None:intergenic
CCAAACCCTCCTCCTCCAGA+TGG 0.549025 1.3:-10578374 MS.gene86276:CDS
ACAGAAACAGGCAAAGGCGA+AGG 0.551232 1.3:+10578959 None:intergenic
CCTGGACATTTGAGTAGGGA+AGG 0.552459 1.3:-10577978 MS.gene86276:CDS
TGCGGTGAAACATTTGTTTG+AGG 0.561096 1.3:-10578726 MS.gene86276:CDS
AAAGGAACACGAACAGTACA+AGG 0.561795 1.3:-10578045 MS.gene86276:CDS
AAAGATGCCCTTGTGGCAGT+TGG 0.561818 1.3:-10579403 MS.gene86276:CDS
AAAATACACAGTACAGAAGC+TGG 0.564405 1.3:-10577715 MS.gene86276:CDS
ACCCTAATCTCATCTAACCT+TGG 0.564928 1.3:+10579472 None:intergenic
CCAGCTTATAGTGCAGGCTG+TGG 0.565578 1.3:-10577811 MS.gene86276:CDS
CCACAGCCTGCACTATAAGC+TGG 0.566269 1.3:+10577811 None:intergenic
CACTTCCATCTGGAGGAGGA+GGG 0.569285 1.3:+10578369 None:intergenic
CCAAGAGAATCCGACAACAT+AGG 0.571698 1.3:+10579001 None:intergenic
TTGAGTTAAATTTGGAGACG+TGG 0.573276 1.3:-10578184 MS.gene86276:CDS
CATAATTCTGCATGTAACTC+CGG 0.573972 1.3:+10577778 None:intergenic
GGGACACTTCCATCTGGAGG+AGG 0.575814 1.3:+10578365 None:intergenic
CTTGACCAGATCACGAGCAG+TGG 0.576203 1.3:+10577929 None:intergenic
TTCAAAACCGACAAATAACC+CGG 0.582627 1.3:+10579274 None:intergenic
AGTCGTTATTGTCGGATCCG+CGG 0.586429 1.3:-10579306 MS.gene86276:CDS
CTTGGACGCGATGTGTGGAT+GGG 0.589692 1.3:-10578668 MS.gene86276:CDS
AGAGGCTTGGACGCGATGTG+TGG 0.590231 1.3:-10578673 MS.gene86276:CDS
CGTCTCCAAATTTAACTCAA+CGG 0.593396 1.3:+10578187 None:intergenic
CTGGACATTTGAGTAGGGAA+GGG 0.593864 1.3:-10577977 MS.gene86276:CDS
CAGAATGATGATTTGGATGG+TGG 0.595911 1.3:-10579097 MS.gene86276:CDS
GGTTAGATGAGATTAGGGTA+AGG 0.596647 1.3:-10579468 MS.gene86276:CDS
AAGTTAGAAGTTCTAATGTG+AGG 0.596874 1.3:-10578859 MS.gene86276:CDS
AATGCCTGATCTTCGTCGTA+CGG 0.597627 1.3:-10577604 MS.gene86276:CDS
TCAAAGATAGCTGCACAGGC+CGG 0.598964 1.3:-10578638 MS.gene86276:CDS
TAATAGGGCTGTTGGGCCTG+CGG 0.599041 1.3:-10579371 MS.gene86276:CDS
AGCTCCCTGGACATTTGAGT+AGG 0.600256 1.3:-10577983 MS.gene86276:CDS
GATTAGCATTAGAGAAAGCA+GGG 0.600716 1.3:-10579495 MS.gene86276:CDS
GCTATCACGCAAGAATATTG+TGG 0.603714 1.3:+10578013 None:intergenic
ATTACTGCAATAAACTCTTG+GGG 0.604612 1.3:-10578319 MS.gene86276:CDS
AACGTCAAAGCTTTCAGGAG+AGG 0.605877 1.3:-10578244 MS.gene86276:CDS
CAATGATGTGCAGAGCATAG+AGG 0.606926 1.3:-10578783 MS.gene86276:CDS
TTTGAAAGGGACAAAGCTTG+GGG 0.608168 1.3:-10578090 MS.gene86276:CDS
GAATCCGACAACATAGGAAG+CGG 0.608996 1.3:+10579007 None:intergenic
GCTCCCTGGACATTTGAGTA+GGG 0.611223 1.3:-10577982 MS.gene86276:CDS
ACTCAGACACTGAGATCTCA+AGG 0.614867 1.3:+10578807 None:intergenic
TTTGTAACGATGTGTTTGAG+AGG 0.617458 1.3:-10578691 MS.gene86276:CDS
CTGTTATCTTGCTCAACCAA+GGG 0.621434 1.3:+10577753 None:intergenic
TCGGTGAATGATCAGGACTT+GGG 0.623778 1.3:+10578274 None:intergenic
ATTGTGGGTTGGCTATTCAG+TGG 0.627113 1.3:-10579216 MS.gene86276:CDS
CTTCCCTACTCAAATGTCCA+GGG 0.629256 1.3:+10577979 None:intergenic
GCTGTTATCTTGCTCAACCA+AGG 0.631207 1.3:+10577752 None:intergenic
ATGACCTCCAACTGCCACAA+GGG 0.634027 1.3:+10579396 None:intergenic
TCGAAATCCAAAATTTGACA+AGG 0.642706 1.3:-10578472 MS.gene86276:CDS
TTACTGCAATAAACTCTTGG+GGG 0.643419 1.3:-10578318 MS.gene86276:CDS
CCATACTTTCCACTAAGCTG+CGG 0.647586 1.3:+10577633 None:intergenic
TATGACCTCCAACTGCCACA+AGG 0.648990 1.3:+10579395 None:intergenic
CTTGGGACACTTCCATCTGG+AGG 0.650514 1.3:+10578362 None:intergenic
TGGTTCAGGTAGAGTTACAG+AGG 0.653712 1.3:-10578397 MS.gene86276:CDS
GATCCGCGGATTGATCTGCC+GGG 0.653844 1.3:-10579292 MS.gene86276:CDS
GGCTGAGAAAGATGCCCTTG+TGG 0.655319 1.3:-10579410 MS.gene86276:CDS
ATATTCTTGCGTGATAGCTG+GGG 0.656213 1.3:-10578008 MS.gene86276:CDS
CTTGGCTTGAATCCGCAGTG+AGG 0.673072 1.3:-10579441 MS.gene86276:CDS
TCGCAGAATGATGATTTGGA+TGG 0.673874 1.3:-10579100 MS.gene86276:CDS
AGCGTCTTGAGGAGGCGTTG+AGG 0.675104 1.3:-10579252 MS.gene86276:CDS
CGAAATCCAAAATTTGACAA+GGG 0.676549 1.3:-10578471 MS.gene86276:CDS
AGCCCGAATCGGCCTCACTG+CGG 0.677385 1.3:+10579429 None:intergenic
TGAACAACAGAAACAGGCAA+AGG 0.682214 1.3:+10578953 None:intergenic
TATCAAGAGTGTGATTGATG+GGG 0.684854 1.3:-10578444 MS.gene86276:CDS
TAGAGGTGTATATAGCTCAG+TGG 0.691578 1.3:-10578766 MS.gene86276:CDS
TGTTCAAAATCTCATTAACG+AGG 0.709151 1.3:+10578219 None:intergenic
TAACCCGGCAGATCAATCCG+CGG 0.748213 1.3:+10579289 None:intergenic
GAGGTGTATATAGCTCAGTG+GGG 0.791248 1.3:-10578764 MS.gene86276:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTAGAGAATGAGTTT+AGG - chr1.3:10578155-10578174 MS.gene86276:CDS 20.0%
!! TGAGTATTTAGAAGATAATT+CGG - chr1.3:10578030-10578049 MS.gene86276:CDS 20.0%
!! TTATCTTAAGAATTTGAAGA+AGG - chr1.3:10578066-10578085 MS.gene86276:CDS 20.0%
!!! TGTGTATTTTGCATATTTAT+TGG + chr1.3:10579484-10579503 None:intergenic 20.0%
! AACAACTTCAATAGCTTAAT+GGG + chr1.3:10578649-10578668 None:intergenic 25.0%
! AAGATTGAAAAAATTCAACG+AGG - chr1.3:10579305-10579324 MS.gene86276:CDS 25.0%
! ATCTGTTCAAACATTTGAAA+GGG - chr1.3:10579106-10579125 MS.gene86276:CDS 25.0%
! ATTGTTCATTGCAAAAAAGT+TGG + chr1.3:10579079-10579098 None:intergenic 25.0%
AATTTGTGAACAACAGAAAC+AGG + chr1.3:10578265-10578284 None:intergenic 30.0%
AGTTGGAGGTCATATTAATA+GGG - chr1.3:10577823-10577842 MS.gene86276:CDS 30.0%
ATACTTGCATTTCTTCAGTT+CGG - chr1.3:10578595-10578614 MS.gene86276:CDS 30.0%
ATTACTGCAATAAACTCTTG+GGG - chr1.3:10578890-10578909 MS.gene86276:CDS 30.0%
CAACAACTTCAATAGCTTAA+TGG + chr1.3:10578650-10578669 None:intergenic 30.0%
CATCTGTTCAAACATTTGAA+AGG - chr1.3:10579105-10579124 MS.gene86276:CDS 30.0%
CATTAAGCTATTGAAGTTGT+TGG - chr1.3:10578648-10578667 MS.gene86276:CDS 30.0%
CGAAATCCAAAATTTGACAA+GGG - chr1.3:10578738-10578757 MS.gene86276:CDS 30.0%
GATTACTGCAATAAACTCTT+GGG - chr1.3:10578889-10578908 MS.gene86276:CDS 30.0%
TAAGAATTTGAAGAAGGAGT+TGG - chr1.3:10578072-10578091 MS.gene86276:CDS 30.0%
TCGAAATCCAAAATTTGACA+AGG - chr1.3:10578737-10578756 MS.gene86276:CDS 30.0%
TGATTACTGCAATAAACTCT+TGG - chr1.3:10578888-10578907 MS.gene86276:CDS 30.0%
TGTTCAAAATCTCATTAACG+AGG + chr1.3:10578993-10579012 None:intergenic 30.0%
! AAATGCTTTTGTGTCTTTAC+CGG - chr1.3:10579520-10579539 MS.gene86276:CDS 30.0%
! AAGTTAGAAGTTCTAATGTG+AGG - chr1.3:10578350-10578369 MS.gene86276:CDS 30.0%
! AGTTAGAAGTTCTAATGTGA+GGG - chr1.3:10578351-10578370 MS.gene86276:CDS 30.0%
! TAAGTTCCCTTGTCAAATTT+TGG + chr1.3:10578747-10578766 None:intergenic 30.0%
! TTAGACAAATCAAAGAGTGT+TGG - chr1.3:10577692-10577711 MS.gene86276:CDS 30.0%
! TTATCAAGAGTGTGATTGAT+GGG - chr1.3:10578764-10578783 MS.gene86276:CDS 30.0%
! TTTTTGCAATGAACAATCAC+TGG - chr1.3:10579082-10579101 MS.gene86276:CDS 30.0%
!!! TGAGTTTAGGTTGCTTTTAA+CGG - chr1.3:10578168-10578187 MS.gene86276:CDS 30.0%
AAAATACACAGTACAGAAGC+TGG - chr1.3:10579494-10579513 MS.gene86276:CDS 35.0%
AATATTCTTGCGTGATAGCT+GGG - chr1.3:10579200-10579219 MS.gene86276:CDS 35.0%
ATCGTTGAACAAATTGAGAC+TGG - chr1.3:10578681-10578700 MS.gene86276:CDS 35.0%
ATTTGAAAGGGACAAAGCTT+GGG - chr1.3:10579118-10579137 MS.gene86276:CDS 35.0%
CAGTTGGAGGTCATATTAAT+AGG - chr1.3:10577822-10577841 MS.gene86276:CDS 35.0%
CATAATTCTGCATGTAACTC+CGG + chr1.3:10579434-10579453 None:intergenic 35.0%
CGTCTCCAAATTTAACTCAA+CGG + chr1.3:10579025-10579044 None:intergenic 35.0%
CTGAAGAAATGCAAGTATAC+CGG + chr1.3:10578593-10578612 None:intergenic 35.0%
GAAAGCCGTTGAGTTAAATT+TGG - chr1.3:10579017-10579036 MS.gene86276:CDS 35.0%
GATTAGCATTAGAGAAAGCA+GGG - chr1.3:10577714-10577733 MS.gene86276:CDS 35.0%
GCAAAAAAGTTGGACAACAT+AGG + chr1.3:10579069-10579088 None:intergenic 35.0%
GTCATATTAATAGGGCTGTT+GGG - chr1.3:10577831-10577850 MS.gene86276:CDS 35.0%
TGATAAAGCTCACCAATCTT+GGG + chr1.3:10578867-10578886 None:intergenic 35.0%
TTACTGCAATAAACTCTTGG+GGG - chr1.3:10578891-10578910 MS.gene86276:CDS 35.0%
TTCAAAACCGACAAATAACC+CGG + chr1.3:10577938-10577957 None:intergenic 35.0%
TTCTGTTGTTCACAAATTGC+AGG - chr1.3:10578267-10578286 MS.gene86276:CDS 35.0%
TTGAGTTAAATTTGGAGACG+TGG - chr1.3:10579025-10579044 MS.gene86276:CDS 35.0%
TTTAGGGGATTCTTGGTTAA+AGG - chr1.3:10579146-10579165 MS.gene86276:CDS 35.0%
TTTGTAACGATGTGTTTGAG+AGG - chr1.3:10578518-10578537 MS.gene86276:CDS 35.0%
! CTTAGTGGAAAGTATGGAAA+TGG - chr1.3:10579582-10579601 MS.gene86276:CDS 35.0%
! CTTATCAAGAGTGTGATTGA+TGG - chr1.3:10578763-10578782 MS.gene86276:CDS 35.0%
! TATCAAGAGTGTGATTGATG+GGG - chr1.3:10578765-10578784 MS.gene86276:CDS 35.0%
!! AGAAATTTTCTGGGAACTTC+TGG - chr1.3:10578792-10578811 MS.gene86276:CDS 35.0%
!! AGGTTTTTGGGAGATAATTG+TGG - chr1.3:10577977-10577996 MS.gene86276:CDS 35.0%
!! GGTTTTTGGGAGATAATTGT+GGG - chr1.3:10577978-10577997 MS.gene86276:CDS 35.0%
AAAGGAACACGAACAGTACA+AGG - chr1.3:10579164-10579183 MS.gene86276:CDS 40.0%
AAATTTGGAGACGTGGATCA+AGG - chr1.3:10579032-10579051 MS.gene86276:CDS 40.0%
AAGGAGTTGGAGAGTCTTAA+GGG - chr1.3:10578085-10578104 MS.gene86276:CDS 40.0%
AATTGCAGGCTATTCTTGGT+AGG - chr1.3:10578281-10578300 MS.gene86276:CDS 40.0%
ACCCTAATCTCATCTAACCT+TGG + chr1.3:10577740-10577759 None:intergenic 40.0%
ATATTCTTGCGTGATAGCTG+GGG - chr1.3:10579201-10579220 MS.gene86276:CDS 40.0%
CAATATTCTTGCGTGATAGC+TGG - chr1.3:10579199-10579218 MS.gene86276:CDS 40.0%
CACAAATTGCAGGCTATTCT+TGG - chr1.3:10578277-10578296 MS.gene86276:CDS 40.0%
CATTTGAAAGGGACAAAGCT+TGG - chr1.3:10579117-10579136 MS.gene86276:CDS 40.0%
CGGAGTTACATGCAGAATTA+TGG - chr1.3:10579432-10579451 MS.gene86276:CDS 40.0%
CTGTTATCTTGCTCAACCAA+GGG + chr1.3:10579459-10579478 None:intergenic 40.0%
GCCAAGGTTAGATGAGATTA+GGG - chr1.3:10577736-10577755 MS.gene86276:CDS 40.0%
GCTATCACGCAAGAATATTG+TGG + chr1.3:10579199-10579218 None:intergenic 40.0%
GCTTGAGAAGTCGTTATTGT+CGG - chr1.3:10577895-10577914 MS.gene86276:CDS 40.0%
GGTCATATTAATAGGGCTGT+TGG - chr1.3:10577830-10577849 MS.gene86276:CDS 40.0%
GGTTAGATGAGATTAGGGTA+AGG - chr1.3:10577741-10577760 MS.gene86276:CDS 40.0%
GTGATAAAGCTCACCAATCT+TGG + chr1.3:10578868-10578887 None:intergenic 40.0%
TGAACAACAGAAACAGGCAA+AGG + chr1.3:10578259-10578278 None:intergenic 40.0%
TGCGGTGAAACATTTGTTTG+AGG - chr1.3:10578483-10578502 MS.gene86276:CDS 40.0%
TTGGAAACGTCAAAGCTTTC+AGG - chr1.3:10578960-10578979 MS.gene86276:CDS 40.0%
TTTGAAAGGGACAAAGCTTG+GGG - chr1.3:10579119-10579138 MS.gene86276:CDS 40.0%
TTTGGGAGATAATTGTGGGT+TGG - chr1.3:10577982-10578001 MS.gene86276:CDS 40.0%
! AAAGCTTGGGGATCTTTTAG+GGG - chr1.3:10579131-10579150 MS.gene86276:CDS 40.0%
! ACAAAGCTTGGGGATCTTTT+AGG - chr1.3:10579129-10579148 MS.gene86276:CDS 40.0%
! AGAGGTGTATATAGCTCAGT+GGG - chr1.3:10578444-10578463 MS.gene86276:CDS 40.0%
! AGCTTTGACGTTTCCAACTT+CGG + chr1.3:10578957-10578976 None:intergenic 40.0%
! CAAAGCTTGGGGATCTTTTA+GGG - chr1.3:10579130-10579149 MS.gene86276:CDS 40.0%
! CAGAATGATGATTTGGATGG+TGG - chr1.3:10578112-10578131 MS.gene86276:CDS 40.0%
! CTGGATTTCAACCGTCTTTT+CGG - chr1.3:10578700-10578719 MS.gene86276:CDS 40.0%
! GGATTAGCATTAGAGAAAGC+AGG - chr1.3:10577713-10577732 MS.gene86276:CDS 40.0%
! TAGAGGTGTATATAGCTCAG+TGG - chr1.3:10578443-10578462 MS.gene86276:CDS 40.0%
! TCGCAGAATGATGATTTGGA+TGG - chr1.3:10578109-10578128 MS.gene86276:CDS 40.0%
! TGGATTTCAACCGTCTTTTC+GGG - chr1.3:10578701-10578720 MS.gene86276:CDS 40.0%
! TGTGTTGAAGGTTTTCGATG+CGG - chr1.3:10577865-10577884 MS.gene86276:CDS 40.0%
!! GATTCTAGTTCTGGTTGTTC+TGG - chr1.3:10577593-10577612 MS.gene86276:CDS 40.0%
AACGATGTGTTTGAGAGGCT+TGG - chr1.3:10578523-10578542 MS.gene86276:CDS 45.0%
AACGTCAAAGCTTTCAGGAG+AGG - chr1.3:10578965-10578984 MS.gene86276:CDS 45.0%
AATCTTGGGACACTTCCATC+TGG + chr1.3:10578853-10578872 None:intergenic 45.0%
AATGCCTGATCTTCGTCGTA+CGG - chr1.3:10579605-10579624 MS.gene86276:CDS 45.0%
ACTCAGACACTGAGATCTCA+AGG + chr1.3:10578405-10578424 None:intergenic 45.0%
AGATAATTCGGTCGCAGATC+AGG - chr1.3:10578042-10578061 MS.gene86276:CDS 45.0%
AGATTAGGGTAAGGTTGCCT+TGG - chr1.3:10577750-10577769 MS.gene86276:CDS 45.0%
ATCAGGACTTGGGTCAGTAT+AGG + chr1.3:10578928-10578947 None:intergenic 45.0%
ATGAAAAGTCCGCAGCTTAG+TGG - chr1.3:10579567-10579586 MS.gene86276:CDS 45.0%
ATGTTGTCGGATTCTCTTGG+TGG - chr1.3:10578211-10578230 MS.gene86276:CDS 45.0%
CAATGATGTGCAGAGCATAG+AGG - chr1.3:10578426-10578445 MS.gene86276:CDS 45.0%
CATGCAGAATTATGGTCCCT+TGG - chr1.3:10579440-10579459 MS.gene86276:CDS 45.0%
CCAAGAGAATCCGACAACAT+AGG + chr1.3:10578211-10578230 None:intergenic 45.0%
CCATACTTTCCACTAAGCTG+CGG + chr1.3:10579579-10579598 None:intergenic 45.0%
CCTATGTTGTCGGATTCTCT+TGG - chr1.3:10578208-10578227 MS.gene86276:CDS 45.0%
CTGGACATTTGAGTAGGGAA+GGG - chr1.3:10579232-10579251 MS.gene86276:CDS 45.0%
CTTCCCTACTCAAATGTCCA+GGG + chr1.3:10579233-10579252 None:intergenic 45.0%
CTTCTCAAAGATAGCTGCAC+AGG - chr1.3:10578567-10578586 MS.gene86276:CDS 45.0%
GAAGGAGTTGGAGAGTCTTA+AGG - chr1.3:10578084-10578103 MS.gene86276:CDS 45.0%
GAATCCGACAACATAGGAAG+CGG + chr1.3:10578205-10578224 None:intergenic 45.0%
GAGGTGTATATAGCTCAGTG+GGG - chr1.3:10578445-10578464 MS.gene86276:CDS 45.0%
GCTGTTATCTTGCTCAACCA+AGG + chr1.3:10579460-10579479 None:intergenic 45.0%
GGCCAAGGTTAGATGAGATT+AGG - chr1.3:10577735-10577754 MS.gene86276:CDS 45.0%
GGGATCGCAGAATGATGATT+TGG - chr1.3:10578105-10578124 MS.gene86276:CDS 45.0%
TCCAACTTCGGTGAATGATC+AGG + chr1.3:10578945-10578964 None:intergenic 45.0%
TCCTGATCATTCACCGAAGT+TGG - chr1.3:10578941-10578960 MS.gene86276:CDS 45.0%
TCGGTGAATGATCAGGACTT+GGG + chr1.3:10578938-10578957 None:intergenic 45.0%
TGATCTGCCGGGTTATTTGT+CGG - chr1.3:10577928-10577947 MS.gene86276:CDS 45.0%
TGCATGTAACTCCGGTAAAC+AGG + chr1.3:10579426-10579445 None:intergenic 45.0%
TGGTTCAGGTAGAGTTACAG+AGG - chr1.3:10578812-10578831 MS.gene86276:CDS 45.0%
TTCGGTGAATGATCAGGACT+TGG + chr1.3:10578939-10578958 None:intergenic 45.0%
! AAGGTTTTCGATGCGGTTCA+TGG - chr1.3:10577872-10577891 MS.gene86276:CDS 45.0%
! AGGTTTTCGATGCGGTTCAT+GGG - chr1.3:10577873-10577892 MS.gene86276:CDS 45.0%
! ATGGGGCAGCAGAAATTTTC+TGG - chr1.3:10578782-10578801 MS.gene86276:CDS 45.0%
! GAGATGTTTTCCAAGCAGTC+AGG - chr1.3:10579336-10579355 MS.gene86276:CDS 45.0%
! GATTTCAACCGTCTTTTCGG+GGG - chr1.3:10578703-10578722 MS.gene86276:CDS 45.0%
! GGATTTCAACCGTCTTTTCG+GGG - chr1.3:10578702-10578721 MS.gene86276:CDS 45.0%
! TGGGGCAGCAGAAATTTTCT+GGG - chr1.3:10578783-10578802 MS.gene86276:CDS 45.0%
! TGTTTTCCAAGCAGTCAGGT+TGG - chr1.3:10579340-10579359 MS.gene86276:CDS 45.0%
!! AGATGGAAGTGTCCCAAGAT+TGG - chr1.3:10578852-10578871 MS.gene86276:CDS 45.0%
!! AGTTCTGGTTGTTCTGGTTC+TGG - chr1.3:10577599-10577618 MS.gene86276:CDS 45.0%
!! ATTGTGGGTTGGCTATTCAG+TGG - chr1.3:10577993-10578012 MS.gene86276:CDS 45.0%
!! GAAGGGCTGATTCTTTTCTC+GGG - chr1.3:10579249-10579268 MS.gene86276:CDS 45.0%
!! GGAAGGGCTGATTCTTTTCT+CGG - chr1.3:10579248-10579267 MS.gene86276:CDS 45.0%
!! GGGAAAGCATTTGGAGTTTG+CGG - chr1.3:10578465-10578484 MS.gene86276:CDS 45.0%
!! GGGATCTTTTAGGGGATTCT+TGG - chr1.3:10579139-10579158 MS.gene86276:CDS 45.0%
!! TGGCTTGTTAGATGCTGCTT+TGG - chr1.3:10578132-10578151 MS.gene86276:CDS 45.0%
!! TTTCTGGGAACTTCTGGTTC+AGG - chr1.3:10578798-10578817 MS.gene86276:CDS 45.0%
AAAGATGCCCTTGTGGCAGT+TGG - chr1.3:10577806-10577825 MS.gene86276:CDS 50.0%
ACAGAAACAGGCAAAGGCGA+AGG + chr1.3:10578253-10578272 None:intergenic 50.0%
AGCTCCCTGGACATTTGAGT+AGG - chr1.3:10579226-10579245 MS.gene86276:CDS 50.0%
AGTCGTTATTGTCGGATCCG+CGG - chr1.3:10577903-10577922 MS.gene86276:CDS 50.0%
ATGACCTCCAACTGCCACAA+GGG + chr1.3:10577816-10577835 None:intergenic 50.0%
CATGATCCAACCTGACTGCT+TGG + chr1.3:10579349-10579368 None:intergenic 50.0%
CATTAGAGAAAGCAGGGCCA+AGG - chr1.3:10577720-10577739 MS.gene86276:CDS 50.0%
CCGCAGCTTAGTGGAAAGTA+TGG - chr1.3:10579576-10579595 MS.gene86276:CDS 50.0%
CCTGGACATTTGAGTAGGGA+AGG - chr1.3:10579231-10579250 MS.gene86276:CDS 50.0%
CCTTCCCTACTCAAATGTCC+AGG + chr1.3:10579234-10579253 None:intergenic 50.0%
GCATCTTTCTCAGCCCGAAT+CGG + chr1.3:10577794-10577813 None:intergenic 50.0%
GCTCCCTGGACATTTGAGTA+GGG - chr1.3:10579227-10579246 MS.gene86276:CDS 50.0%
TAATGTGAGGGCGAGTTTGC+AGG - chr1.3:10578363-10578382 MS.gene86276:CDS 50.0%
TATGACCTCCAACTGCCACA+AGG + chr1.3:10577817-10577836 None:intergenic 50.0%
TCAAAGATAGCTGCACAGGC+CGG - chr1.3:10578571-10578590 MS.gene86276:CDS 50.0%
!! AGCTCAGTGGGGAAAGCATT+TGG - chr1.3:10578456-10578475 MS.gene86276:CDS 50.0%
!! CAAGCAGTCAGGTTGGATCA+TGG - chr1.3:10579347-10579366 MS.gene86276:CDS 50.0%
!! GAGTTTGCAGGCGCTGAATT+TGG - chr1.3:10578375-10578394 MS.gene86276:CDS 50.0%
!! GGCTGATTCTTTTCTCGGGA+GGG - chr1.3:10579253-10579272 MS.gene86276:CDS 50.0%
!! TGGGTTGGCTATTCAGTGGT+TGG - chr1.3:10577997-10578016 MS.gene86276:CDS 50.0%
!! TGTGCCGCTTCCTATGTTGT+CGG - chr1.3:10578198-10578217 MS.gene86276:CDS 50.0%
!!! GAGGAGGCGTTGAGGTTTTT+GGG - chr1.3:10577965-10577984 MS.gene86276:CDS 50.0%
!!! GGTTTTGAAGCGTCTTGAGG+AGG - chr1.3:10577949-10577968 MS.gene86276:CDS 50.0%
!!! GTCGGTTTTGAAGCGTCTTG+AGG - chr1.3:10577946-10577965 MS.gene86276:CDS 50.0%
!!! TGAGGAGGCGTTGAGGTTTT+TGG - chr1.3:10577964-10577983 MS.gene86276:CDS 50.0%
AATCCGCAGTGAGGCCGATT+CGG - chr1.3:10577777-10577796 MS.gene86276:CDS 55.0%
ACACTTCCATCTGGAGGAGG+AGG + chr1.3:10578844-10578863 None:intergenic 55.0%
ACGCATCTCCCCCGAAAAGA+CGG + chr1.3:10578714-10578733 None:intergenic 55.0%
AGGCTGTGGTGCCTGTTTAC+CGG - chr1.3:10579412-10579431 MS.gene86276:CDS 55.0%
CACTTCCATCTGGAGGAGGA+GGG + chr1.3:10578843-10578862 None:intergenic 55.0%
CCACAGCCTGCACTATAAGC+TGG + chr1.3:10579401-10579420 None:intergenic 55.0%
CCAGCTTATAGTGCAGGCTG+TGG - chr1.3:10579398-10579417 MS.gene86276:CDS 55.0%
CTCACTGCGGATTCAAGCCA+AGG + chr1.3:10577770-10577789 None:intergenic 55.0%
CTTGACCAGATCACGAGCAG+TGG + chr1.3:10579283-10579302 None:intergenic 55.0%
CTTGGACGCGATGTGTGGAT+GGG - chr1.3:10578541-10578560 MS.gene86276:CDS 55.0%
CTTGGGACACTTCCATCTGG+AGG + chr1.3:10578850-10578869 None:intergenic 55.0%
GAAGCCGTACGACGAAGATC+AGG + chr1.3:10579612-10579631 None:intergenic 55.0%
GACGTGCCAGCTTATAGTGC+AGG - chr1.3:10579392-10579411 MS.gene86276:CDS 55.0%
GGCTGAGAAAGATGCCCTTG+TGG - chr1.3:10577799-10577818 MS.gene86276:CDS 55.0%
TAACCCGGCAGATCAATCCG+CGG + chr1.3:10577923-10577942 None:intergenic 55.0%
TAATAGGGCTGTTGGGCCTG+CGG - chr1.3:10577838-10577857 MS.gene86276:CDS 55.0%
TTCATGCTGCCGTGTCTTGC+AGG + chr1.3:10579552-10579571 None:intergenic 55.0%
! CTTGGCTTGAATCCGCAGTG+AGG - chr1.3:10577768-10577787 MS.gene86276:CDS 55.0%
! GTCGGATTCTCTTGGTGGTC+AGG - chr1.3:10578216-10578235 MS.gene86276:CDS 55.0%
!! GGGCTGATTCTTTTCTCGGG+AGG - chr1.3:10579252-10579271 MS.gene86276:CDS 55.0%
ACCTTCAACACAGCAGCCGC+AGG + chr1.3:10577857-10577876 None:intergenic 60.0%
AGAGGCTTGGACGCGATGTG+TGG - chr1.3:10578536-10578555 MS.gene86276:CDS 60.0%
CCAAACCCTCCTCCTCCAGA+TGG - chr1.3:10578835-10578854 MS.gene86276:CDS 60.0%
CCATCTGGAGGAGGAGGGTT+TGG + chr1.3:10578838-10578857 None:intergenic 60.0%
CTGCCGTGTCTTGCAGGCTT+CGG + chr1.3:10579546-10579565 None:intergenic 60.0%
GATAGCTGGGGAAAGCTCCC+TGG - chr1.3:10579213-10579232 MS.gene86276:CDS 60.0%
GATGCCCTTGTGGCAGTTGG+AGG - chr1.3:10577809-10577828 MS.gene86276:CDS 60.0%
GCTTGGACGCGATGTGTGGA+TGG - chr1.3:10578540-10578559 MS.gene86276:CDS 60.0%
GGGACACTTCCATCTGGAGG+AGG + chr1.3:10578847-10578866 None:intergenic 60.0%
! ATCCGCAGTGAGGCCGATTC+GGG - chr1.3:10577778-10577797 MS.gene86276:CDS 60.0%
! GATCCGCGGATTGATCTGCC+GGG - chr1.3:10577917-10577936 MS.gene86276:CDS 60.0%
! GGATCCGCGGATTGATCTGC+CGG - chr1.3:10577916-10577935 MS.gene86276:CDS 60.0%
!! AGCGTCTTGAGGAGGCGTTG+AGG - chr1.3:10577957-10577976 MS.gene86276:CDS 60.0%
AGCCCGAATCGGCCTCACTG+CGG + chr1.3:10577783-10577802 None:intergenic 65.0%
CGGCCGAAGCCTGCAAGACA+CGG - chr1.3:10579540-10579559 MS.gene86276:CDS 65.0%
CGTGTCTTGCAGGCTTCGGC+CGG + chr1.3:10579542-10579561 None:intergenic 65.0%
GCCTGCGGCTGCTGTGTTGA+AGG - chr1.3:10577853-10577872 MS.gene86276:CDS 65.0%
! GCGTGCCACTGCTCGTGATC+TGG - chr1.3:10579275-10579294 MS.gene86276:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 10577587 10579644 10577587 ID=MS.gene86276
chr1.3 mRNA 10577587 10579644 10577587 ID=MS.gene86276.t1;Parent=MS.gene86276
chr1.3 exon 10577587 10579644 10577587 ID=MS.gene86276.t1.exon1;Parent=MS.gene86276.t1
chr1.3 CDS 10577587 10579644 10577587 ID=cds.MS.gene86276.t1;Parent=MS.gene86276.t1
Gene Sequence

>MS.gene86276

ATGGCTGATTCTAGTTCTGGTTGTTCTGGTTCTGGTTCTGTTAGTTTGAAAAGTGATAGTAGAATTGAGAATTTGATTTTAGCTAGTAAATCATTGAAACTTAGTTTAGACAAATCAAAGAGTGTTGGATTAGCATTAGAGAAAGCAGGGCCAAGGTTAGATGAGATTAGGGTAAGGTTGCCTTGGCTTGAATCCGCAGTGAGGCCGATTCGGGCTGAGAAAGATGCCCTTGTGGCAGTTGGAGGTCATATTAATAGGGCTGTTGGGCCTGCGGCTGCTGTGTTGAAGGTTTTCGATGCGGTTCATGGGCTTGAGAAGTCGTTATTGTCGGATCCGCGGATTGATCTGCCGGGTTATTTGTCGGTTTTGAAGCGTCTTGAGGAGGCGTTGAGGTTTTTGGGAGATAATTGTGGGTTGGCTATTCAGTGGTTGGATGATATAGTTGAGTATTTAGAAGATAATTCGGTCGCAGATCAGGTTTATCTTAAGAATTTGAAGAAGGAGTTGGAGAGTCTTAAGGGATCGCAGAATGATGATTTGGATGGTGGCTTGTTAGATGCTGCTTTGGATAAATTAGAGAATGAGTTTAGGTTGCTTTTAACGGAAAACAGTGTGCCGCTTCCTATGTTGTCGGATTCTCTTGGTGGTCAGGCTTGCATTGCGCCTTCGCCTTTGCCTGTTTCTGTTGTTCACAAATTGCAGGCTATTCTTGGTAGGTTGAGAGCTAATGATAGACTTGACAAGTGTGTGTCGATTTACGTTGAAGTTAGAAGTTCTAATGTGAGGGCGAGTTTGCAGGCGCTGAATTTGGACTACCTTGAGATCTCAGTGTCTGAGTTCAATGATGTGCAGAGCATAGAGGTGTATATAGCTCAGTGGGGAAAGCATTTGGAGTTTGCGGTGAAACATTTGTTTGAGGCTGAGTATAAGCTTTGTAACGATGTGTTTGAGAGGCTTGGACGCGATGTGTGGATGGGTTGCTTCTCAAAGATAGCTGCACAGGCCGGTATACTTGCATTTCTTCAGTTCGGTAAGACTGTTACAGAGAGTAAGAAAGATCCCATTAAGCTATTGAAGTTGTTGGATATTTTTGCATCGTTGAACAAATTGAGACTGGATTTCAACCGTCTTTTCGGGGGAGATGCGTGCGTCGAAATCCAAAATTTGACAAGGGAACTTATCAAGAGTGTGATTGATGGGGCAGCAGAAATTTTCTGGGAACTTCTGGTTCAGGTAGAGTTACAGAGGCCAAACCCTCCTCCTCCAGATGGAAGTGTCCCAAGATTGGTGAGCTTTATCACTGATTACTGCAATAAACTCTTGGGGGACGACTATAAGCCTATACTGACCCAAGTCCTGATCATTCACCGAAGTTGGAAACGTCAAAGCTTTCAGGAGAGGCTCCTCGTTAATGAGATTTTGAACATATTGAAAGCCGTTGAGTTAAATTTGGAGACGTGGATCAAGGCTTATGATGATCCTATGTTGTCCAACTTTTTTGCAATGAACAATCACTGGCATCTGTTCAAACATTTGAAAGGGACAAAGCTTGGGGATCTTTTAGGGGATTCTTGGTTAAAGGAACACGAACAGTACAAGGACTATTACTCCACAATATTCTTGCGTGATAGCTGGGGAAAGCTCCCTGGACATTTGAGTAGGGAAGGGCTGATTCTTTTCTCGGGAGGGCGTGCCACTGCTCGTGATCTGGTCAAGAAAAGATTGAAAAAATTCAACGAGGTTTTTGATGAGATGTTTTCCAAGCAGTCAGGTTGGATCATGGTAGAACGAGATCTGAGAGAGAAGACGTGCCAGCTTATAGTGCAGGCTGTGGTGCCTGTTTACCGGAGTTACATGCAGAATTATGGTCCCTTGGTTGAGCAAGATAACAGCTCCAATAAATATGCAAAATACACAGTACAGAAGCTGGAAGAAATGCTTTTGTGTCTTTACCGGCCGAAGCCTGCAAGACACGGCAGCATGAAAAGTCCGCAGCTTAGTGGAAAGTATGGAAATGGAATGCCTGATCTTCGTCGTACGGCTTCAGCAGTTGTGTAG
Protein sequence

>MS.gene86276.t1

MADSSSGCSGSGSVSLKSDSRIENLILASKSLKLSLDKSKSVGLALEKAGPRLDEIRVRLPWLESAVRPIRAEKDALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRIDLPGYLSVLKRLEEALRFLGDNCGLAIQWLDDIVEYLEDNSVADQVYLKNLKKELESLKGSQNDDLDGGLLDAALDKLENEFRLLLTENSVPLPMLSDSLGGQACIAPSPLPVSVVHKLQAILGRLRANDRLDKCVSIYVEVRSSNVRASLQALNLDYLEISVSEFNDVQSIEVYIAQWGKHLEFAVKHLFEAEYKLCNDVFERLGRDVWMGCFSKIAAQAGILAFLQFGKTVTESKKDPIKLLKLLDIFASLNKLRLDFNRLFGGDACVEIQNLTRELIKSVIDGAAEIFWELLVQVELQRPNPPPPDGSVPRLVSFITDYCNKLLGDDYKPILTQVLIIHRSWKRQSFQERLLVNEILNILKAVELNLETWIKAYDDPMLSNFFAMNNHWHLFKHLKGTKLGDLLGDSWLKEHEQYKDYYSTIFLRDSWGKLPGHLSREGLILFSGGRATARDLVKKRLKKFNEVFDEMFSKQSGWIMVERDLREKTCQLIVQAVVPVYRSYMQNYGPLVEQDNSSNKYAKYTVQKLEEMLLCLYRPKPARHGSMKSPQLSGKYGNGMPDLRRTASAVV