Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86543.t1 | XP_003612372.1 | 97.6 | 425 | 7 | 1 | 1 | 425 | 1 | 422 | 1.90E-206 | 728.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86543.t1 | Q9SVG0 | 58.6 | 430 | 168 | 3 | 5 | 424 | 6 | 435 | 5.4e-133 | 475.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86543.t1 | G7K191 | 97.6 | 425 | 7 | 1 | 1 | 425 | 1 | 422 | 1.4e-206 | 728.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051487 | MS.gene86543 | -0.822568 | 2.21E-53 | -1.69E-46 |
| MS.gene058484 | MS.gene86543 | -0.810842 | 9.43E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80637 | MS.gene86543 | PPI |
| MS.gene007487 | MS.gene86543 | PPI |
| MS.gene018518 | MS.gene86543 | PPI |
| MS.gene22482 | MS.gene86543 | PPI |
| MS.gene061932 | MS.gene86543 | PPI |
| MS.gene051911 | MS.gene86543 | PPI |
| MS.gene86543 | MS.gene09785 | PPI |
| MS.gene86543 | MS.gene007485 | PPI |
| MS.gene007486 | MS.gene86543 | PPI |
| MS.gene29579 | MS.gene86543 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86543.t1 | MTR_5g024300 | 97.647 | 425 | 7 | 1 | 1 | 425 | 1 | 422 | 0.0 | 827 |
| MS.gene86543.t1 | MTR_8g073340 | 66.995 | 406 | 130 | 1 | 20 | 425 | 12 | 413 | 0.0 | 525 |
| MS.gene86543.t1 | MTR_7g107090 | 37.410 | 417 | 228 | 7 | 19 | 417 | 3 | 404 | 4.05e-76 | 243 |
| MS.gene86543.t1 | MTR_1g094620 | 23.874 | 444 | 288 | 16 | 4 | 421 | 117 | 536 | 2.52e-18 | 87.4 |
| MS.gene86543.t1 | MTR_1g094620 | 23.947 | 451 | 286 | 17 | 4 | 421 | 117 | 543 | 2.73e-17 | 84.3 |
| MS.gene86543.t1 | MTR_7g010750 | 27.361 | 413 | 252 | 18 | 32 | 422 | 42 | 428 | 2.88e-17 | 84.0 |
| MS.gene86543.t1 | MTR_3g465510 | 25.659 | 417 | 256 | 16 | 31 | 422 | 42 | 429 | 4.14e-17 | 83.2 |
| MS.gene86543.t1 | MTR_7g010790 | 26.620 | 432 | 263 | 20 | 18 | 422 | 25 | 429 | 1.39e-16 | 81.6 |
| MS.gene86543.t1 | MTR_3g033730 | 26.464 | 427 | 240 | 17 | 31 | 422 | 42 | 429 | 2.58e-15 | 77.8 |
| MS.gene86543.t1 | MTR_8g467180 | 25.000 | 408 | 268 | 13 | 31 | 422 | 20 | 405 | 7.47e-15 | 76.3 |
| MS.gene86543.t1 | MTR_3g465440 | 25.420 | 417 | 250 | 17 | 31 | 418 | 48 | 432 | 1.24e-14 | 76.6 |
| MS.gene86543.t1 | MTR_8g467190 | 24.378 | 402 | 270 | 13 | 35 | 422 | 23 | 404 | 8.06e-14 | 73.2 |
| MS.gene86543.t1 | MTR_8g465310 | 23.373 | 415 | 260 | 16 | 34 | 422 | 22 | 404 | 7.22e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86543.t1 | AT4G38250 | 65.197 | 431 | 140 | 3 | 4 | 424 | 5 | 435 | 0.0 | 556 |
| MS.gene86543.t1 | AT2G42005 | 66.667 | 405 | 129 | 2 | 18 | 420 | 10 | 410 | 0.0 | 543 |
| MS.gene86543.t1 | AT5G65990 | 66.993 | 409 | 129 | 2 | 17 | 425 | 25 | 427 | 0.0 | 514 |
| MS.gene86543.t1 | AT3G11900 | 36.682 | 428 | 222 | 8 | 24 | 417 | 17 | 429 | 2.40e-74 | 239 |
| MS.gene86543.t1 | AT3G11900 | 36.682 | 428 | 222 | 8 | 24 | 417 | 17 | 429 | 2.40e-74 | 239 |
| MS.gene86543.t1 | AT5G15240 | 26.484 | 438 | 278 | 15 | 4 | 420 | 5 | 419 | 8.49e-22 | 97.4 |
| MS.gene86543.t1 | AT2G39130 | 24.408 | 422 | 279 | 12 | 19 | 421 | 145 | 545 | 5.31e-18 | 86.7 |
| MS.gene86543.t1 | AT2G39130 | 24.408 | 422 | 279 | 12 | 19 | 421 | 145 | 545 | 5.31e-18 | 86.7 |
| MS.gene86543.t1 | AT2G41190 | 23.881 | 402 | 277 | 10 | 32 | 421 | 148 | 532 | 1.12e-17 | 85.5 |
| MS.gene86543.t1 | AT3G28960 | 26.923 | 416 | 250 | 15 | 31 | 421 | 16 | 402 | 2.44e-15 | 77.8 |
| MS.gene86543.t1 | AT3G28960 | 26.923 | 416 | 250 | 15 | 31 | 421 | 16 | 402 | 2.44e-15 | 77.8 |
| MS.gene86543.t1 | AT3G28960 | 26.923 | 416 | 250 | 15 | 31 | 421 | 16 | 402 | 2.44e-15 | 77.8 |
| MS.gene86543.t1 | AT3G28960 | 26.923 | 416 | 250 | 15 | 31 | 421 | 16 | 402 | 2.44e-15 | 77.8 |
| MS.gene86543.t1 | AT3G54830 | 25.745 | 369 | 232 | 11 | 44 | 390 | 163 | 511 | 9.02e-15 | 76.6 |
| MS.gene86543.t1 | AT3G54830 | 25.745 | 369 | 232 | 11 | 44 | 390 | 163 | 511 | 9.02e-15 | 76.6 |
| MS.gene86543.t1 | AT5G02180 | 25.653 | 421 | 267 | 12 | 20 | 420 | 150 | 544 | 5.00e-14 | 74.3 |
| MS.gene86543.t1 | AT5G02180 | 25.653 | 421 | 267 | 12 | 20 | 420 | 150 | 544 | 5.00e-14 | 74.3 |
| MS.gene86543.t1 | AT2G39130 | 25.069 | 363 | 232 | 12 | 19 | 362 | 145 | 486 | 2.17e-13 | 72.4 |
| MS.gene86543.t1 | AT5G15240 | 25.948 | 343 | 218 | 11 | 98 | 420 | 7 | 333 | 5.69e-13 | 70.1 |
Find 96 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTTGTTGTTGCTGTTTA+TGG | 0.117334 | 5.1:-15007135 | MS.gene86543:CDS |
| CATGCAAAATAGACCAAATT+TGG | 0.163682 | 5.1:-15007715 | MS.gene86543:CDS |
| CGGCGAAAAGTTTGTATCTT+TGG | 0.171178 | 5.1:-15007869 | MS.gene86543:CDS |
| GGTGAGGTGGTTGTTGGTTT+TGG | 0.173510 | 5.1:-15007331 | MS.gene86543:CDS |
| CCCTTAAAAGCTTCCAAATT+TGG | 0.173765 | 5.1:+15007702 | None:intergenic |
| ACTAAAGATAAAGAGAAATT+TGG | 0.176282 | 5.1:-15007597 | MS.gene86543:CDS |
| AAATACTCAAAGGGGCTAAA+TGG | 0.209190 | 5.1:+15007799 | None:intergenic |
| TCTATATTATTTGGTGCTTT+TGG | 0.213007 | 5.1:-15007543 | MS.gene86543:CDS |
| GGTATGATTTCTATATTATT+TGG | 0.220969 | 5.1:-15007552 | MS.gene86543:CDS |
| AATCAAATCTTTCGGCGATT+TGG | 0.225599 | 5.1:-15008057 | MS.gene86543:CDS |
| GATATTATTACTAATAATTT+AGG | 0.226982 | 5.1:-15007483 | MS.gene86543:CDS |
| GGCGAAAAGTTTGTATCTTT+GGG | 0.249310 | 5.1:-15007868 | MS.gene86543:CDS |
| GCCGTTAAACCGATGAAAAT+AGG | 0.259033 | 5.1:+15007888 | None:intergenic |
| ATAGGTGTTATGGTTCAATT+AGG | 0.262950 | 5.1:-15007450 | MS.gene86543:CDS |
| ATCGCCGAAAGATTTGATTT+TGG | 0.265782 | 5.1:+15008061 | None:intergenic |
| ATCAAATCTTTCGGCGATTT+GGG | 0.268793 | 5.1:-15008056 | MS.gene86543:CDS |
| ACCTGCTTTGTTTCATTGTA+TGG | 0.285431 | 5.1:-15007217 | MS.gene86543:CDS |
| GGTGAGTTTGGTGGCACTTT+TGG | 0.301518 | 5.1:-15007307 | MS.gene86543:CDS |
| CGGTGATGGATTCGAGTTTC+CGG | 0.304307 | 5.1:+15008090 | None:intergenic |
| AGTAGTGTTTGTGTTGTTCT+TGG | 0.305093 | 5.1:-15007249 | MS.gene86543:CDS |
| ATGATTGTGCTTTCACAAGC+TGG | 0.315652 | 5.1:-15007990 | MS.gene86543:CDS |
| ATCGTCGGCGCCGGCGTTCT+CGG | 0.337782 | 5.1:-15008218 | MS.gene86543:CDS |
| GTGTCTTCGCGTGGGTAGGG+TGG | 0.342661 | 5.1:+15008308 | None:intergenic |
| CTAAAGATAAAGAGAAATTT+GGG | 0.358199 | 5.1:-15007596 | MS.gene86543:CDS |
| TTCTCCAAAATCAAATCTTT+CGG | 0.360516 | 5.1:-15008065 | MS.gene86543:CDS |
| TTTGAATTGGGAGGAGAGGG+GGG | 0.368849 | 5.1:+15008265 | None:intergenic |
| AAGTTGAAGAAATGAAAATA+AGG | 0.383503 | 5.1:+15007952 | None:intergenic |
| CTAGGTATTGTTTGTGGGTG+AGG | 0.391723 | 5.1:-15007347 | MS.gene86543:CDS |
| AATCTCTGAAACAGATGTAT+AGG | 0.394641 | 5.1:+15007110 | None:intergenic |
| TTCTGCTAAGAGTGTTGTTA+TGG | 0.395374 | 5.1:-15007757 | MS.gene86543:CDS |
| TTTGTGGGTGAGGTGGTTGT+TGG | 0.396163 | 5.1:-15007337 | MS.gene86543:CDS |
| GATGATGAATCCTGTTTATG+AGG | 0.399583 | 5.1:-15007394 | MS.gene86543:CDS |
| TTCACCATTTGTGGCCCATT+AGG | 0.399764 | 5.1:-15008032 | MS.gene86543:CDS |
| GATTTGGGTTTCACCATTTG+TGG | 0.407357 | 5.1:-15008041 | MS.gene86543:CDS |
| GTGATTCTAGGTATTGTTTG+TGG | 0.411186 | 5.1:-15007353 | MS.gene86543:CDS |
| AATTTAGGTCAAGGTGTGAT+AGG | 0.415141 | 5.1:-15007468 | MS.gene86543:CDS |
| CCGTTAAACCGATGAAAATA+GGG | 0.418409 | 5.1:+15007889 | None:intergenic |
| AATACTCAAAGGGGCTAAAT+GGG | 0.422180 | 5.1:+15007800 | None:intergenic |
| TTCAGAGATTCTTTCTCCTA+AGG | 0.423873 | 5.1:-15007097 | MS.gene86543:CDS |
| TGGAGATGCTTGGTTTCAGA+TGG | 0.426094 | 5.1:-15007174 | MS.gene86543:CDS |
| TGATTCTAGGTATTGTTTGT+GGG | 0.427448 | 5.1:-15007352 | MS.gene86543:CDS |
| TCAAGGTGTGATAGGTGTTA+TGG | 0.428573 | 5.1:-15007460 | MS.gene86543:CDS |
| GAGGTAGCCGGTGCGTTTGA+AGG | 0.444851 | 5.1:+15008184 | None:intergenic |
| GGGGTGTCTTCGCGTGGGTA+GGG | 0.447145 | 5.1:+15008305 | None:intergenic |
| CCGGTGCGTTTGAAGGAGTA+AGG | 0.447211 | 5.1:+15008191 | None:intergenic |
| AGAGTTGGGTTGGAGATGCT+TGG | 0.457507 | 5.1:-15007184 | MS.gene86543:CDS |
| TGATTGTGCTTTCACAAGCT+GGG | 0.465440 | 5.1:-15007989 | MS.gene86543:CDS |
| TTCCAAATCAATCAAGCCTT+AGG | 0.468756 | 5.1:+15007081 | None:intergenic |
| TTGAATTGGGAGGAGAGGGG+GGG | 0.471686 | 5.1:+15008266 | None:intergenic |
| TGTCTTCGCGTGGGTAGGGT+GGG | 0.472433 | 5.1:+15008309 | None:intergenic |
| GGAGATGCTTGGTTTCAGAT+GGG | 0.475884 | 5.1:-15007173 | MS.gene86543:CDS |
| GGTTTCAGCGGTGGTGTCAC+CGG | 0.477530 | 5.1:+15007914 | None:intergenic |
| TAGGTGTTATGGTTCAATTA+GGG | 0.480288 | 5.1:-15007449 | MS.gene86543:CDS |
| AGCTTGTGAAAGCACAATCA+TGG | 0.488957 | 5.1:+15007992 | None:intergenic |
| TTCATCGCCATCGTCGGCGC+CGG | 0.491063 | 5.1:-15008227 | MS.gene86543:CDS |
| GATGAGACCGGTGAGGTAGC+CGG | 0.501029 | 5.1:+15008172 | None:intergenic |
| ATTACTAATAATTTAGGTCA+AGG | 0.502446 | 5.1:-15007477 | MS.gene86543:CDS |
| ACGGCCTAATGGGCCACAAA+TGG | 0.508734 | 5.1:+15008028 | None:intergenic |
| GGGGTGATTTAGTAAGAAGG+GGG | 0.509539 | 5.1:+15008285 | None:intergenic |
| GAATTCAACCCTAATTGAAA+AGG | 0.509944 | 5.1:+15007837 | None:intergenic |
| TGGGTAGGGTGGGAGTGAGT+AGG | 0.521131 | 5.1:+15008319 | None:intergenic |
| GGCGATGAAGATGTTGGCGC+AGG | 0.529083 | 5.1:+15008241 | None:intergenic |
| AACATGGTGTTCAAAGAAGC+AGG | 0.533056 | 5.1:-15008350 | MS.gene86543:CDS |
| AACATCTTCATCGCCATCGT+CGG | 0.542040 | 5.1:-15008233 | MS.gene86543:CDS |
| AAACGCACCGGCTACCTCAC+CGG | 0.545253 | 5.1:-15008179 | MS.gene86543:CDS |
| TAAACAGGATTCATCATCAA+AGG | 0.546520 | 5.1:+15007399 | None:intergenic |
| GGTATTGTTTGTGGGTGAGG+TGG | 0.548580 | 5.1:-15007344 | MS.gene86543:CDS |
| TCCTCCTCGTCAACACTCGC+CGG | 0.555101 | 5.1:-15008109 | MS.gene86543:CDS |
| ACTTTATCATTTCTCACCGC+CGG | 0.560571 | 5.1:-15007933 | MS.gene86543:CDS |
| GGCGAAGAGGTTGATGAGAC+CGG | 0.560917 | 5.1:+15008160 | None:intergenic |
| GGGTGATTTAGTAAGAAGGG+GGG | 0.563619 | 5.1:+15008286 | None:intergenic |
| TCTTTAGTCTCACTTTCCAA+AGG | 0.564288 | 5.1:+15007612 | None:intergenic |
| GAGATGCTTGGTTTCAGATG+GGG | 0.565266 | 5.1:-15007172 | MS.gene86543:CDS |
| AGATAAAGAGAAATTTGGGA+GGG | 0.580185 | 5.1:-15007592 | MS.gene86543:CDS |
| GAGGAGGAGCATGCAGTGGT+AGG | 0.580282 | 5.1:+15008124 | None:intergenic |
| ACCATACAATGAAACAAAGC+AGG | 0.581653 | 5.1:+15007216 | None:intergenic |
| GCGAAAAGTTTGTATCTTTG+GGG | 0.582000 | 5.1:-15007867 | MS.gene86543:CDS |
| GAGAACGCCGGCGCCGACGA+TGG | 0.586591 | 5.1:+15008220 | None:intergenic |
| GACGATGGCGATGAAGATGT+TGG | 0.595120 | 5.1:+15008235 | None:intergenic |
| CCTTACTCCTTCAAACGCAC+CGG | 0.595955 | 5.1:-15008191 | MS.gene86543:CDS |
| GAAAATAGGGACGGTTTCAG+CGG | 0.597712 | 5.1:+15007902 | None:intergenic |
| CGGAAACTCGAATCCATCAC+CGG | 0.599755 | 5.1:-15008089 | MS.gene86543:CDS |
| AATAGGGACGGTTTCAGCGG+TGG | 0.607310 | 5.1:+15007905 | None:intergenic |
| GGAGCATGCAGTGGTAGGTG+AGG | 0.612235 | 5.1:+15008129 | None:intergenic |
| CGGTGCGTTTGAAGGAGTAA+GGG | 0.615815 | 5.1:+15008192 | None:intergenic |
| AAGCACAATCATGGAGTCAA+CGG | 0.622860 | 5.1:+15008001 | None:intergenic |
| TTCAGCGGTGGTGTCACCGG+CGG | 0.623054 | 5.1:+15007917 | None:intergenic |
| AAGATAAAGAGAAATTTGGG+AGG | 0.627925 | 5.1:-15007593 | MS.gene86543:CDS |
| GTAAGGGAGACCGAGAACGC+CGG | 0.630022 | 5.1:+15008208 | None:intergenic |
| TCCGGCGAGTGTTGACGAGG+AGG | 0.631211 | 5.1:+15008108 | None:intergenic |
| GTGGTAGGTGAGGTAAGCGA+TGG | 0.634247 | 5.1:+15008139 | None:intergenic |
| TGAGGTAAGCGATGGCGAAG+AGG | 0.640064 | 5.1:+15008147 | None:intergenic |
| GTTTCCGGCGAGTGTTGACG+AGG | 0.647193 | 5.1:+15008105 | None:intergenic |
| TAAACCGATGAAAATAGGGA+CGG | 0.664104 | 5.1:+15007893 | None:intergenic |
| TGACGAGGAGGAGCATGCAG+TGG | 0.678520 | 5.1:+15008120 | None:intergenic |
| AGAGGTTGATGAGACCGGTG+AGG | 0.727750 | 5.1:+15008165 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATTATTACTAATAATTT+AGG | - | chr5.1:15007956-15007975 | MS.gene86543:CDS | 10.0% |
| !! | AAGTTGAAGAAATGAAAATA+AGG | + | chr5.1:15007490-15007509 | None:intergenic | 20.0% |
| !! | ACTAAAGATAAAGAGAAATT+TGG | - | chr5.1:15007842-15007861 | MS.gene86543:CDS | 20.0% |
| !! | ATTACTAATAATTTAGGTCA+AGG | - | chr5.1:15007962-15007981 | MS.gene86543:CDS | 20.0% |
| !! | CTAAAGATAAAGAGAAATTT+GGG | - | chr5.1:15007843-15007862 | MS.gene86543:CDS | 20.0% |
| !! | GGTATGATTTCTATATTATT+TGG | - | chr5.1:15007887-15007906 | MS.gene86543:CDS | 20.0% |
| ! | GACAAAAAATCAGCAAAATT+AGG | + | chr5.1:15008160-15008179 | None:intergenic | 25.0% |
| ! | TTCTCCAAAATCAAATCTTT+CGG | - | chr5.1:15007374-15007393 | MS.gene86543:CDS | 25.0% |
| !! | GTTTCATTGTATGGTTTTTA+AGG | - | chr5.1:15008231-15008250 | MS.gene86543:CDS | 25.0% |
| !!! | GTTGTTTTCCTTTTCAATTA+GGG | - | chr5.1:15007594-15007613 | MS.gene86543:CDS | 25.0% |
| !!! | TCTATATTATTTGGTGCTTT+TGG | - | chr5.1:15007896-15007915 | MS.gene86543:CDS | 25.0% |
| AAGATAAAGAGAAATTTGGG+AGG | - | chr5.1:15007846-15007865 | MS.gene86543:CDS | 30.0% | |
| ACATCAGCAAAAATACTCAA+AGG | + | chr5.1:15007653-15007672 | None:intergenic | 30.0% | |
| AGATAAAGAGAAATTTGGGA+GGG | - | chr5.1:15007847-15007866 | MS.gene86543:CDS | 30.0% | |
| ATCAGCAAAAATACTCAAAG+GGG | + | chr5.1:15007651-15007670 | None:intergenic | 30.0% | |
| CATCAGCAAAAATACTCAAA+GGG | + | chr5.1:15007652-15007671 | None:intergenic | 30.0% | |
| CATGCAAAATAGACCAAATT+TGG | - | chr5.1:15007724-15007743 | MS.gene86543:CDS | 30.0% | |
| GAATTCAACCCTAATTGAAA+AGG | + | chr5.1:15007605-15007624 | None:intergenic | 30.0% | |
| TAAACAGGATTCATCATCAA+AGG | + | chr5.1:15008043-15008062 | None:intergenic | 30.0% | |
| ! | ACCAAATTTGGAAGCTTTTA+AGG | - | chr5.1:15007736-15007755 | MS.gene86543:CDS | 30.0% |
| ! | ATAGGTGTTATGGTTCAATT+AGG | - | chr5.1:15007989-15008008 | MS.gene86543:CDS | 30.0% |
| ! | CCAAATTTGGAAGCTTTTAA+GGG | - | chr5.1:15007737-15007756 | MS.gene86543:CDS | 30.0% |
| ! | TAGGTGTTATGGTTCAATTA+GGG | - | chr5.1:15007990-15008009 | MS.gene86543:CDS | 30.0% |
| ! | TGATTCTAGGTATTGTTTGT+GGG | - | chr5.1:15008087-15008106 | MS.gene86543:CDS | 30.0% |
| !! | AATCTCTGAAACAGATGTAT+AGG | + | chr5.1:15008332-15008351 | None:intergenic | 30.0% |
| !! | AGATTTGATTTTGGAGAAAC+CGG | + | chr5.1:15007372-15007391 | None:intergenic | 30.0% |
| !! | ATGGTTTTTAAGGAAGAGTT+GGG | - | chr5.1:15008241-15008260 | MS.gene86543:CDS | 30.0% |
| !! | GGTTGTTTTCCTTTTCAATT+AGG | - | chr5.1:15007593-15007612 | MS.gene86543:CDS | 30.0% |
| !! | GTTTTAGGCTATTTTGCTTT+TGG | - | chr5.1:15007920-15007939 | MS.gene86543:CDS | 30.0% |
| !! | TATGGTTTTTAAGGAAGAGT+TGG | - | chr5.1:15008240-15008259 | MS.gene86543:CDS | 30.0% |
| !! | TTTATGAGGTTTTTGAGAGA+AGG | - | chr5.1:15008059-15008078 | MS.gene86543:CDS | 30.0% |
| !!! | CTGATTTTTTGTCACTTGTT+GGG | - | chr5.1:15008167-15008186 | MS.gene86543:CDS | 30.0% |
| !!! | GGTGTTTTTTTCTATGGTAT+TGG | - | chr5.1:15007764-15007783 | MS.gene86543:CDS | 30.0% |
| !!! | GGTTTTGGTGTTTTTTTCTA+TGG | - | chr5.1:15007758-15007777 | MS.gene86543:CDS | 30.0% |
| !!! | TTGCTGTTTATGCTTTTGAA+GGG | - | chr5.1:15007789-15007808 | MS.gene86543:CDS | 30.0% |
| AAATACTCAAAGGGGCTAAA+TGG | + | chr5.1:15007643-15007662 | None:intergenic | 35.0% | |
| AATACTCAAAGGGGCTAAAT+GGG | + | chr5.1:15007642-15007661 | None:intergenic | 35.0% | |
| AATCAAATCTTTCGGCGATT+TGG | - | chr5.1:15007382-15007401 | MS.gene86543:CDS | 35.0% | |
| AATTTAGGTCAAGGTGTGAT+AGG | - | chr5.1:15007971-15007990 | MS.gene86543:CDS | 35.0% | |
| ACCATACAATGAAACAAAGC+AGG | + | chr5.1:15008226-15008245 | None:intergenic | 35.0% | |
| ATCAAATCTTTCGGCGATTT+GGG | - | chr5.1:15007383-15007402 | MS.gene86543:CDS | 35.0% | |
| CCCTTAAAAGCTTCCAAATT+TGG | + | chr5.1:15007740-15007759 | None:intergenic | 35.0% | |
| CCGTTAAACCGATGAAAATA+GGG | + | chr5.1:15007553-15007572 | None:intergenic | 35.0% | |
| CTCTCAAAAACCTCATAAAC+AGG | + | chr5.1:15008058-15008077 | None:intergenic | 35.0% | |
| GATGATGAATCCTGTTTATG+AGG | - | chr5.1:15008045-15008064 | MS.gene86543:CDS | 35.0% | |
| GCGAAAAGTTTGTATCTTTG+GGG | - | chr5.1:15007572-15007591 | MS.gene86543:CDS | 35.0% | |
| GGCGAAAAGTTTGTATCTTT+GGG | - | chr5.1:15007571-15007590 | MS.gene86543:CDS | 35.0% | |
| TAAACCGATGAAAATAGGGA+CGG | + | chr5.1:15007549-15007568 | None:intergenic | 35.0% | |
| TCTTTAGTCTCACTTTCCAA+AGG | + | chr5.1:15007830-15007849 | None:intergenic | 35.0% | |
| TTCAGAGATTCTTTCTCCTA+AGG | - | chr5.1:15008342-15008361 | MS.gene86543:CDS | 35.0% | |
| ! | AGAAATTTGGGAGGGTTTTA+GGG | - | chr5.1:15007855-15007874 | MS.gene86543:CDS | 35.0% |
| ! | AGTAGTGTTTGTGTTGTTCT+TGG | - | chr5.1:15008190-15008209 | MS.gene86543:CDS | 35.0% |
| ! | GATGGGGCAATTATGATTTT+TGG | - | chr5.1:15008283-15008302 | MS.gene86543:CDS | 35.0% |
| ! | GTGATTCTAGGTATTGTTTG+TGG | - | chr5.1:15008086-15008105 | MS.gene86543:CDS | 35.0% |
| ! | TGCTTTTGGTGAAGAAACTA+AGG | - | chr5.1:15007934-15007953 | MS.gene86543:CDS | 35.0% |
| !! | ACCTGCTTTGTTTCATTGTA+TGG | - | chr5.1:15008222-15008241 | MS.gene86543:CDS | 35.0% |
| !! | AGAGAAGGTTTTGTGATTCT+AGG | - | chr5.1:15008074-15008093 | MS.gene86543:CDS | 35.0% |
| !! | ATCGCCGAAAGATTTGATTT+TGG | + | chr5.1:15007381-15007400 | None:intergenic | 35.0% |
| !! | GGATTTGTTGTTGCTGTTTA+TGG | - | chr5.1:15008304-15008323 | MS.gene86543:CDS | 35.0% |
| !! | GTTTATGCTTTTGAAGGGAT+TGG | - | chr5.1:15007794-15007813 | MS.gene86543:CDS | 35.0% |
| !! | TTCTGCTAAGAGTGTTGTTA+TGG | - | chr5.1:15007682-15007701 | MS.gene86543:CDS | 35.0% |
| !! | TTGGAAGCTTTTAAGGGTTT+TGG | - | chr5.1:15007743-15007762 | MS.gene86543:CDS | 35.0% |
| !! | TTTTTAAGGAAGAGTTGGGT+TGG | - | chr5.1:15008245-15008264 | MS.gene86543:CDS | 35.0% |
| !!! | CCCTATTTTCATCGGTTTAA+CGG | - | chr5.1:15007550-15007569 | MS.gene86543:CDS | 35.0% |
| !!! | GCTGATTTTTTGTCACTTGT+TGG | - | chr5.1:15008166-15008185 | MS.gene86543:CDS | 35.0% |
| !!! | GTTGCTGTTTATGCTTTTGA+AGG | - | chr5.1:15007788-15007807 | MS.gene86543:CDS | 35.0% |
| !!! | TTTGGTGCTTTTGGTGTTTT+AGG | - | chr5.1:15007905-15007924 | MS.gene86543:CDS | 35.0% |
| AAGCACAATCATGGAGTCAA+CGG | + | chr5.1:15007441-15007460 | None:intergenic | 40.0% | |
| ACTTTATCATTTCTCACCGC+CGG | - | chr5.1:15007506-15007525 | MS.gene86543:CDS | 40.0% | |
| ATGATTGTGCTTTCACAAGC+TGG | - | chr5.1:15007449-15007468 | MS.gene86543:CDS | 40.0% | |
| CGGCGAAAAGTTTGTATCTT+TGG | - | chr5.1:15007570-15007589 | MS.gene86543:CDS | 40.0% | |
| GCCGTTAAACCGATGAAAAT+AGG | + | chr5.1:15007554-15007573 | None:intergenic | 40.0% | |
| TCAAGGTGTGATAGGTGTTA+TGG | - | chr5.1:15007979-15007998 | MS.gene86543:CDS | 40.0% | |
| TCATGGAGTCAACGGAAAAA+CGG | + | chr5.1:15007433-15007452 | None:intergenic | 40.0% | |
| TGATTGTGCTTTCACAAGCT+GGG | - | chr5.1:15007450-15007469 | MS.gene86543:CDS | 40.0% | |
| ! | AGCTTGTGAAAGCACAATCA+TGG | + | chr5.1:15007450-15007469 | None:intergenic | 40.0% |
| ! | GAAACCGTCCCTATTTTCAT+CGG | - | chr5.1:15007542-15007561 | MS.gene86543:CDS | 40.0% |
| ! | GAGAAATTTGGGAGGGTTTT+AGG | - | chr5.1:15007854-15007873 | MS.gene86543:CDS | 40.0% |
| ! | GATTTGGGTTTCACCATTTG+TGG | - | chr5.1:15007398-15007417 | MS.gene86543:CDS | 40.0% |
| !! | GATTGGAATGGTTTTGCCTT+TGG | - | chr5.1:15007811-15007830 | MS.gene86543:CDS | 40.0% |
| !! | TGCTTTTGAAGGGATTGGAA+TGG | - | chr5.1:15007799-15007818 | MS.gene86543:CDS | 40.0% |
| AACATCTTCATCGCCATCGT+CGG | - | chr5.1:15007206-15007225 | MS.gene86543:CDS | 45.0% | |
| CAACGGAAAAACGGCCTAAT+GGG | + | chr5.1:15007424-15007443 | None:intergenic | 45.0% | |
| GAAAATAGGGACGGTTTCAG+CGG | + | chr5.1:15007540-15007559 | None:intergenic | 45.0% | |
| GAGATGCTTGGTTTCAGATG+GGG | - | chr5.1:15008267-15008286 | MS.gene86543:CDS | 45.0% | |
| GGAGATGCTTGGTTTCAGAT+GGG | - | chr5.1:15008266-15008285 | MS.gene86543:CDS | 45.0% | |
| GGGGGGTGATTTAGTAAGAA+GGG | + | chr5.1:15007159-15007178 | None:intergenic | 45.0% | |
| GGGGGTGATTTAGTAAGAAG+GGG | + | chr5.1:15007158-15007177 | None:intergenic | 45.0% | |
| GGGGTGATTTAGTAAGAAGG+GGG | + | chr5.1:15007157-15007176 | None:intergenic | 45.0% | |
| GGGTGATTTAGTAAGAAGGG+GGG | + | chr5.1:15007156-15007175 | None:intergenic | 45.0% | |
| TCAACGGAAAAACGGCCTAA+TGG | + | chr5.1:15007425-15007444 | None:intergenic | 45.0% | |
| TGGAGATGCTTGGTTTCAGA+TGG | - | chr5.1:15008265-15008284 | MS.gene86543:CDS | 45.0% | |
| TTCACCATTTGTGGCCCATT+AGG | - | chr5.1:15007407-15007426 | MS.gene86543:CDS | 45.0% | |
| ! | CTAGGTATTGTTTGTGGGTG+AGG | - | chr5.1:15008092-15008111 | MS.gene86543:CDS | 45.0% |
| ! | TTTTGAATTGGGAGGAGAGG+GGG | + | chr5.1:15007178-15007197 | None:intergenic | 45.0% |
| !! | GATTTTGGAGAAACCGGTGA+TGG | + | chr5.1:15007366-15007385 | None:intergenic | 45.0% |
| !! | GTTTTGAATTGGGAGGAGAG+GGG | + | chr5.1:15007179-15007198 | None:intergenic | 45.0% |
| !!! | AGGGTTTTAGGGTTAGGGAT+GGG | - | chr5.1:15007866-15007885 | MS.gene86543:CDS | 45.0% |
| !!! | AGGTTTTGAATTGGGAGGAG+AGG | + | chr5.1:15007181-15007200 | None:intergenic | 45.0% |
| !!! | GGTTTTGAATTGGGAGGAGA+GGG | + | chr5.1:15007180-15007199 | None:intergenic | 45.0% |
| !!! | GTTGGCGCAGGTTTTGAATT+GGG | + | chr5.1:15007189-15007208 | None:intergenic | 45.0% |
| !!! | GTTGGTTTTGGTGGTGAGTT+TGG | - | chr5.1:15008120-15008139 | MS.gene86543:CDS | 45.0% |
| !!! | TGTTGGCGCAGGTTTTGAAT+TGG | + | chr5.1:15007190-15007209 | None:intergenic | 45.0% |
| !!! | TTGGGAGGGTTTTAGGGTTA+GGG | - | chr5.1:15007861-15007880 | MS.gene86543:CDS | 45.0% |
| !!! | TTTGGGAGGGTTTTAGGGTT+AGG | - | chr5.1:15007860-15007879 | MS.gene86543:CDS | 45.0% |
| CCTTACTCCTTCAAACGCAC+CGG | - | chr5.1:15007248-15007267 | MS.gene86543:CDS | 50.0% | |
| CGGAAACTCGAATCCATCAC+CGG | - | chr5.1:15007350-15007369 | MS.gene86543:CDS | 50.0% | |
| CGGTGCGTTTGAAGGAGTAA+GGG | + | chr5.1:15007250-15007269 | None:intergenic | 50.0% | |
| GACGATGGCGATGAAGATGT+TGG | + | chr5.1:15007207-15007226 | None:intergenic | 50.0% | |
| GGGGGGGTGATTTAGTAAGA+AGG | + | chr5.1:15007160-15007179 | None:intergenic | 50.0% | |
| GGTATTGTTTGTGGGTGAGG+TGG | - | chr5.1:15008095-15008114 | MS.gene86543:CDS | 50.0% | |
| TTTGAATTGGGAGGAGAGGG+GGG | + | chr5.1:15007177-15007196 | None:intergenic | 50.0% | |
| TTTGTGGGTGAGGTGGTTGT+TGG | - | chr5.1:15008102-15008121 | MS.gene86543:CDS | 50.0% | |
| !! | AGAGTTGGGTTGGAGATGCT+TGG | - | chr5.1:15008255-15008274 | MS.gene86543:CDS | 50.0% |
| !! | CGGTGATGGATTCGAGTTTC+CGG | + | chr5.1:15007352-15007371 | None:intergenic | 50.0% |
| !! | GGTGAGTTTGGTGGCACTTT+TGG | - | chr5.1:15008132-15008151 | MS.gene86543:CDS | 50.0% |
| !!! | GAGGGTTTTAGGGTTAGGGA+TGG | - | chr5.1:15007865-15007884 | MS.gene86543:CDS | 50.0% |
| !!! | GAGGTGGTTGTTGGTTTTGG+TGG | - | chr5.1:15008111-15008130 | MS.gene86543:CDS | 50.0% |
| !!! | GGTGAGGTGGTTGTTGGTTT+TGG | - | chr5.1:15008108-15008127 | MS.gene86543:CDS | 50.0% |
| !!! | GGTTTTGGTGGTGAGTTTGG+TGG | - | chr5.1:15008123-15008142 | MS.gene86543:CDS | 50.0% |
| AATAGGGACGGTTTCAGCGG+TGG | + | chr5.1:15007537-15007556 | None:intergenic | 55.0% | |
| CCGGTGCGTTTGAAGGAGTA+AGG | + | chr5.1:15007251-15007270 | None:intergenic | 55.0% | |
| GTGGTAGGTGAGGTAAGCGA+TGG | + | chr5.1:15007303-15007322 | None:intergenic | 55.0% | |
| TGAGGTAAGCGATGGCGAAG+AGG | + | chr5.1:15007295-15007314 | None:intergenic | 55.0% | |
| TTGAATTGGGAGGAGAGGGG+GGG | + | chr5.1:15007176-15007195 | None:intergenic | 55.0% | |
| ! | ACGGCCTAATGGGCCACAAA+TGG | + | chr5.1:15007414-15007433 | None:intergenic | 55.0% |
| !! | AGAGGTTGATGAGACCGGTG+AGG | + | chr5.1:15007277-15007296 | None:intergenic | 55.0% |
| !! | GGCGAAGAGGTTGATGAGAC+CGG | + | chr5.1:15007282-15007301 | None:intergenic | 55.0% |
| !!! | GGCGCAGGTTTTGAATTGGG+AGG | + | chr5.1:15007186-15007205 | None:intergenic | 55.0% |
| GAGGTAGCCGGTGCGTTTGA+AGG | + | chr5.1:15007258-15007277 | None:intergenic | 60.0% | |
| GATGAGACCGGTGAGGTAGC+CGG | + | chr5.1:15007270-15007289 | None:intergenic | 60.0% | |
| GGAGCATGCAGTGGTAGGTG+AGG | + | chr5.1:15007313-15007332 | None:intergenic | 60.0% | |
| GGCGATGAAGATGTTGGCGC+AGG | + | chr5.1:15007201-15007220 | None:intergenic | 60.0% | |
| GTAAGGGAGACCGAGAACGC+CGG | + | chr5.1:15007234-15007253 | None:intergenic | 60.0% | |
| TCCTCCTCGTCAACACTCGC+CGG | - | chr5.1:15007330-15007349 | MS.gene86543:CDS | 60.0% | |
| TGGGTAGGGTGGGAGTGAGT+AGG | + | chr5.1:15007123-15007142 | None:intergenic | 60.0% | |
| TGTCTTCGCGTGGGTAGGGT+GGG | + | chr5.1:15007133-15007152 | None:intergenic | 60.0% | |
| ! | GAGGAGGAGCATGCAGTGGT+AGG | + | chr5.1:15007318-15007337 | None:intergenic | 60.0% |
| ! | TGACGAGGAGGAGCATGCAG+TGG | + | chr5.1:15007322-15007341 | None:intergenic | 60.0% |
| !! | AAACGCACCGGCTACCTCAC+CGG | - | chr5.1:15007260-15007279 | MS.gene86543:CDS | 60.0% |
| !! | GGTTTCAGCGGTGGTGTCAC+CGG | + | chr5.1:15007528-15007547 | None:intergenic | 60.0% |
| !! | GTTTCCGGCGAGTGTTGACG+AGG | + | chr5.1:15007337-15007356 | None:intergenic | 60.0% |
| GTGTCTTCGCGTGGGTAGGG+TGG | + | chr5.1:15007134-15007153 | None:intergenic | 65.0% | |
| TTCATCGCCATCGTCGGCGC+CGG | - | chr5.1:15007212-15007231 | MS.gene86543:CDS | 65.0% | |
| ! | GGGGTGTCTTCGCGTGGGTA+GGG | + | chr5.1:15007137-15007156 | None:intergenic | 65.0% |
| !! | AGAAGGGGGGTGTCTTCGCG+TGG | + | chr5.1:15007143-15007162 | None:intergenic | 65.0% |
| !! | GAAGGGGGGTGTCTTCGCGT+GGG | + | chr5.1:15007142-15007161 | None:intergenic | 65.0% |
| !! | TCCGGCGAGTGTTGACGAGG+AGG | + | chr5.1:15007334-15007353 | None:intergenic | 65.0% |
| !! | TTCAGCGGTGGTGTCACCGG+CGG | + | chr5.1:15007525-15007544 | None:intergenic | 65.0% |
| !! | ATCGTCGGCGCCGGCGTTCT+CGG | - | chr5.1:15007221-15007240 | MS.gene86543:CDS | 70.0% |
| !! | GGGGGTGTCTTCGCGTGGGT+AGG | + | chr5.1:15007138-15007157 | None:intergenic | 70.0% |
| !! | GAGAACGCCGGCGCCGACGA+TGG | + | chr5.1:15007222-15007241 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 15007092 | 15008369 | 15007092 | ID=MS.gene86543 |
| chr5.1 | mRNA | 15007092 | 15008369 | 15007092 | ID=MS.gene86543.t1;Parent=MS.gene86543 |
| chr5.1 | exon | 15007092 | 15008369 | 15007092 | ID=MS.gene86543.t1.exon1;Parent=MS.gene86543.t1 |
| chr5.1 | CDS | 15007092 | 15008369 | 15007092 | ID=cds.MS.gene86543.t1;Parent=MS.gene86543.t1 |
| Gene Sequence |
| Protein sequence |
