Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87652.t1 | AFK33633.1 | 95.3 | 319 | 15 | 0 | 3 | 321 | 1 | 319 | 4.40E-171 | 610.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87652.t1 | P22195 | 59.7 | 298 | 119 | 1 | 24 | 321 | 20 | 316 | 2.5e-98 | 360.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87652.t1 | I3S041 | 95.3 | 319 | 15 | 0 | 3 | 321 | 1 | 319 | 3.2e-171 | 610.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene87652 | 0.820303 | 7.37E-53 | -1.69E-46 |
| MS.gene050216 | MS.gene87652 | 0.842602 | 2.34E-58 | -1.69E-46 |
| MS.gene050504 | MS.gene87652 | 0.811096 | 8.31E-51 | -1.69E-46 |
| MS.gene050662 | MS.gene87652 | 0.822249 | 2.62E-53 | -1.69E-46 |
| MS.gene050868 | MS.gene87652 | 0.829058 | 6.37E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene87652 | 0.831453 | 1.65E-55 | -1.69E-46 |
| MS.gene051509 | MS.gene87652 | 0.824456 | 7.99E-54 | -1.69E-46 |
| MS.gene052164 | MS.gene87652 | 0.816069 | 6.69E-52 | -1.69E-46 |
| MS.gene053626 | MS.gene87652 | 0.816243 | 6.12E-52 | -1.69E-46 |
| MS.gene053633 | MS.gene87652 | 0.816129 | 6.48E-52 | -1.69E-46 |
| MS.gene054003 | MS.gene87652 | 0.845604 | 3.66E-59 | -1.69E-46 |
| MS.gene055722 | MS.gene87652 | 0.822728 | 2.03E-53 | -1.69E-46 |
| MS.gene056510 | MS.gene87652 | 0.844455 | 7.48E-59 | -1.69E-46 |
| MS.gene058041 | MS.gene87652 | 0.81797 | 2.50E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene87652 | 0.81171 | 6.11E-51 | -1.69E-46 |
| MS.gene059367 | MS.gene87652 | 0.826701 | 2.35E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene87652 | 0.837223 | 5.90E-57 | -1.69E-46 |
| MS.gene060295 | MS.gene87652 | 0.809303 | 2.02E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene87652 | 0.842364 | 2.71E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTGTCATTTCCACTTC+TGG | 0.104036 | 3.1:+59084100 | None:intergenic |
| GAGGACTTGGTGGCTCTTTC+AGG | 0.143018 | 3.1:-59084370 | MS.gene87652:intron |
| CAAGAATTTACTAGCTAAAA+AGG | 0.225103 | 3.1:-59084027 | MS.gene87652:CDS |
| GACCAAGAGTTGTTCAATAT+TGG | 0.252796 | 3.1:-59083990 | MS.gene87652:CDS |
| CTAGTAAATTCTTGAAGTAT+AGG | 0.325478 | 3.1:+59084036 | None:intergenic |
| GGGTGCAGGAATTGAGTTAT+TGG | 0.349043 | 3.1:+59084447 | None:intergenic |
| TTCACTATAGACAACAGTTC+CGG | 0.373371 | 3.1:+59085445 | None:intergenic |
| TCTGTCCATTGCTTCCTGTA+AGG | 0.382168 | 3.1:+59083868 | None:intergenic |
| AGTAGCATCAAACCCCTTAC+AGG | 0.383440 | 3.1:-59083882 | MS.gene87652:CDS |
| CCTGCACCCTTTCTCAATCT+AGG | 0.391216 | 3.1:-59084433 | MS.gene87652:CDS |
| ACATTGTCATTTCCACTTCT+GGG | 0.391311 | 3.1:+59084101 | None:intergenic |
| TACAGCTAGGAGGCCCTTCA+TGG | 0.398807 | 3.1:-59084519 | MS.gene87652:intron |
| CTGTCCATTGCTTCCTGTAA+GGG | 0.399520 | 3.1:+59083869 | None:intergenic |
| TGGAAGTTCTACTAATAATC+TGG | 0.403475 | 3.1:-59083970 | MS.gene87652:CDS |
| GATGATACAAGCAGTTTCAT+AGG | 0.416762 | 3.1:-59085218 | MS.gene87652:CDS |
| CCCTTCATGGGATGTAGGCT+TGG | 0.421379 | 3.1:-59084506 | MS.gene87652:CDS |
| TTCCAATATTGAACAACTCT+TGG | 0.421834 | 3.1:+59083988 | None:intergenic |
| TCCTCTAGCTGAATTATTGT+TGG | 0.430062 | 3.1:+59085178 | None:intergenic |
| TGCTCTGGCTGCTCGAGACT+CGG | 0.431287 | 3.1:-59085081 | MS.gene87652:CDS |
| GGGATTCAATCACAGCTAGT+AGG | 0.433896 | 3.1:-59084477 | MS.gene87652:CDS |
| TCACTATAGACAACAGTTCC+GGG | 0.444339 | 3.1:+59085446 | None:intergenic |
| GGGATGTAGGCTTGGGAAGA+AGG | 0.448719 | 3.1:-59084498 | MS.gene87652:CDS |
| GAGAGCACCTAGATTGAGAA+AGG | 0.455148 | 3.1:+59084426 | None:intergenic |
| TGAACAACTCTTGGTCTGAA+TGG | 0.456022 | 3.1:+59083997 | None:intergenic |
| AAGCAACAAGAACAATTAAG+AGG | 0.476569 | 3.1:+59085533 | None:intergenic |
| TCAGCGCATGACACAACCTT+GGG | 0.476961 | 3.1:+59085110 | None:intergenic |
| ATATCAGGTGCACATACAAT+TGG | 0.478538 | 3.1:-59084212 | MS.gene87652:intron |
| CCTTCATGGGATGTAGGCTT+GGG | 0.484592 | 3.1:-59084505 | MS.gene87652:CDS |
| TAAGAGCATTTACGACTCCT+TGG | 0.486870 | 3.1:+59085422 | None:intergenic |
| ATGCGCTGATATTCTTGCTC+TGG | 0.489404 | 3.1:-59085096 | MS.gene87652:CDS |
| TTTGACCATGCCCTCGGCAA+AGG | 0.502363 | 3.1:+59083908 | None:intergenic |
| ACGGCTCTCAGTTGAGGACT+TGG | 0.506617 | 3.1:-59084383 | MS.gene87652:CDS |
| CAAAACAAGTGCCCCAGAAG+TGG | 0.514491 | 3.1:-59084113 | MS.gene87652:CDS |
| GGAGGCCCTTCATGGGATGT+AGG | 0.516630 | 3.1:-59084511 | MS.gene87652:CDS |
| GTTCTACTAATAATCTGGTA+AGG | 0.520710 | 3.1:-59083965 | MS.gene87652:CDS |
| TAAAGCCTTTGCCGAGGGCA+TGG | 0.522792 | 3.1:-59083913 | MS.gene87652:CDS |
| CTTCTACTGCAGCAGCTGCC+CGG | 0.529821 | 3.1:-59085464 | MS.gene87652:CDS |
| TGTCCATTGCTTCCTGTAAG+GGG | 0.533881 | 3.1:+59083870 | None:intergenic |
| GCTCTCAGTTGAGGACTTGG+TGG | 0.535426 | 3.1:-59084380 | MS.gene87652:CDS |
| CCCAAGCCTACATCCCATGA+AGG | 0.538878 | 3.1:+59084505 | None:intergenic |
| GGGGCATGATTTCTCCACAC+TGG | 0.540613 | 3.1:+59085130 | None:intergenic |
| GGATGTAGGCTTGGGAAGAA+GGG | 0.547053 | 3.1:-59084497 | MS.gene87652:CDS |
| GTTCTCTATAGCTTCTTACA+TGG | 0.554349 | 3.1:-59085569 | None:intergenic |
| CATTGTCATTTCCACTTCTG+GGG | 0.563012 | 3.1:+59084102 | None:intergenic |
| GGATTCAATCACAGCTAGTA+GGG | 0.564451 | 3.1:-59084476 | MS.gene87652:CDS |
| ATCAGCGCATGACACAACCT+TGG | 0.578526 | 3.1:+59085109 | None:intergenic |
| TTGTAGAGACTTTCTAAACA+AGG | 0.582654 | 3.1:+59084133 | None:intergenic |
| TGTAGAGACTTTCTAAACAA+GGG | 0.584213 | 3.1:+59084134 | None:intergenic |
| AGTCGGTGTTTGATAGTCGA+GGG | 0.584764 | 3.1:+59084070 | None:intergenic |
| AGAGCACCTAGATTGAGAAA+GGG | 0.588529 | 3.1:+59084427 | None:intergenic |
| CTGTGACGCATCGATTCTGT+TGG | 0.589559 | 3.1:-59085240 | MS.gene87652:CDS |
| ACAGCTAGGAGGCCCTTCAT+GGG | 0.592407 | 3.1:-59084518 | MS.gene87652:intron |
| GTAGAGACTTTCTAAACAAG+GGG | 0.593968 | 3.1:+59084135 | None:intergenic |
| GCCAACAATAATTCAGCTAG+AGG | 0.597481 | 3.1:-59085179 | MS.gene87652:CDS |
| AAACCCCTTACAGGAAGCAA+TGG | 0.600367 | 3.1:-59083873 | MS.gene87652:CDS |
| CCTAGATTGAGAAAGGGTGC+AGG | 0.601415 | 3.1:+59084433 | None:intergenic |
| TAACCAACGGCTCTCAGTTG+AGG | 0.605373 | 3.1:-59084389 | MS.gene87652:CDS |
| TGTTGGAATTTACAGCTAGG+AGG | 0.611020 | 3.1:-59084529 | MS.gene87652:intron |
| AGTCCTCAACTGAGAGCCGT+TGG | 0.611270 | 3.1:+59084386 | None:intergenic |
| CCAAGCCTACATCCCATGAA+GGG | 0.612588 | 3.1:+59084506 | None:intergenic |
| TCACATTTACAAAGCAGTCG+TGG | 0.627284 | 3.1:+59085356 | None:intergenic |
| TCTGCAATATCTGAAGCAGA+TGG | 0.628991 | 3.1:-59085508 | MS.gene87652:CDS |
| TCTAAACAAGGGGTCAACGT+TGG | 0.638866 | 3.1:+59084145 | None:intergenic |
| GAGTCGGTGTTTGATAGTCG+AGG | 0.639212 | 3.1:+59084069 | None:intergenic |
| GTCGGTGTTTGATAGTCGAG+GGG | 0.646321 | 3.1:+59084071 | None:intergenic |
| TATAGGTTATCGAAATGAGT+CGG | 0.655911 | 3.1:+59084053 | None:intergenic |
| TGTGGAGAAATCATGCCCCA+AGG | 0.668608 | 3.1:-59085126 | MS.gene87652:CDS |
| CTGTTGTCTATAGTGAACCA+AGG | 0.680644 | 3.1:-59085439 | MS.gene87652:CDS |
| CAGCGCATGACACAACCTTG+GGG | 0.704066 | 3.1:+59085111 | None:intergenic |
| TGATGATATCAAAGCCAGTG+TGG | 0.742684 | 3.1:-59085144 | MS.gene87652:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTTAATTAATCTATAAA+GGG | - | chr3.1:59084836-59084855 | MS.gene87652:intron | 10.0% |
| !! | TATAGTTAATAAATATAACA+AGG | - | chr3.1:59084440-59084459 | MS.gene87652:CDS | 10.0% |
| !!! | TTCAAATAAACATAATTTTT+AGG | - | chr3.1:59084538-59084557 | MS.gene87652:intron | 10.0% |
| !! | AATTAAATCTCTCTAATTAA+GGG | + | chr3.1:59084826-59084845 | None:intergenic | 15.0% |
| !! | GAGATTTAATTAATCTATAA+AGG | - | chr3.1:59084835-59084854 | MS.gene87652:intron | 15.0% |
| !! | TAATTAAATCTCTCTAATTA+AGG | + | chr3.1:59084827-59084846 | None:intergenic | 15.0% |
| !!! | ACACATTTTAAATATTTATG+TGG | - | chr3.1:59084403-59084422 | MS.gene87652:CDS | 15.0% |
| !! | AATTATGTTTATTTGAACAC+TGG | + | chr3.1:59084535-59084554 | None:intergenic | 20.0% |
| !! | GATGTTTAATGAATATAACA+AGG | + | chr3.1:59084680-59084699 | None:intergenic | 20.0% |
| !! | TTAATCTATAAAGGGTTAAA+TGG | - | chr3.1:59084844-59084863 | MS.gene87652:intron | 20.0% |
| !!! | AATCATGATAAAGCATTAAT+AGG | + | chr3.1:59085065-59085084 | None:intergenic | 20.0% |
| !!! | TCGTAGTTAATTTTGTTTTA+TGG | + | chr3.1:59084486-59084505 | None:intergenic | 20.0% |
| ! | AAATATACACTTGAAATTCG+TGG | - | chr3.1:59084617-59084636 | MS.gene87652:intron | 25.0% |
| ! | AACTTTATTCAAGAATTCTC+TGG | - | chr3.1:59085094-59085113 | MS.gene87652:CDS | 25.0% |
| ! | AGAATTCTTGAATAAAGTTG+TGG | + | chr3.1:59085093-59085112 | None:intergenic | 25.0% |
| ! | ATTTAACGCAATGATCATTA+AGG | - | chr3.1:59084133-59084152 | MS.gene87652:CDS | 25.0% |
| ! | CAAGAATTTACTAGCTAAAA+AGG | - | chr3.1:59085370-59085389 | MS.gene87652:CDS | 25.0% |
| ! | CTAGTAAATTCTTGAAGTAT+AGG | + | chr3.1:59085364-59085383 | None:intergenic | 25.0% |
| ! | CTTAAAAAAGAAACTCGAAT+AGG | - | chr3.1:59083994-59084013 | MS.gene87652:CDS | 25.0% |
| ! | TTGAGTATATCTTCAATATC+AGG | - | chr3.1:59085170-59085189 | MS.gene87652:CDS | 25.0% |
| ! | TTTAACGCAATGATCATTAA+GGG | - | chr3.1:59084134-59084153 | MS.gene87652:CDS | 25.0% |
| !! | AAACAAATTTTGCTAACCAA+CGG | - | chr3.1:59084995-59085014 | MS.gene87652:intron | 25.0% |
| AAGCAACAAGAACAATTAAG+AGG | + | chr3.1:59083867-59083886 | None:intergenic | 30.0% | |
| AATTTAAATGGTTACTGCAG+TGG | + | chr3.1:59084720-59084739 | None:intergenic | 30.0% | |
| ATAAAGGGTTAAATGGTTGT+TGG | - | chr3.1:59084851-59084870 | MS.gene87652:intron | 30.0% | |
| GTTCACATCAATATAGTAGA+TGG | - | chr3.1:59084377-59084396 | MS.gene87652:CDS | 30.0% | |
| GTTCTACTAATAATCTGGTA+AGG | - | chr3.1:59085432-59085451 | MS.gene87652:CDS | 30.0% | |
| TATAGGTTATCGAAATGAGT+CGG | + | chr3.1:59085347-59085366 | None:intergenic | 30.0% | |
| TGGAAGTTCTACTAATAATC+TGG | - | chr3.1:59085427-59085446 | MS.gene87652:CDS | 30.0% | |
| TGTAGAGACTTTCTAAACAA+GGG | + | chr3.1:59085266-59085285 | None:intergenic | 30.0% | |
| TTCCAATATTGAACAACTCT+TGG | + | chr3.1:59085412-59085431 | None:intergenic | 30.0% | |
| TTGTAGAGACTTTCTAAACA+AGG | + | chr3.1:59085267-59085286 | None:intergenic | 30.0% | |
| ! | TAAGGGCATAGTATCATATT+GGG | + | chr3.1:59084809-59084828 | None:intergenic | 30.0% |
| ! | TTAAGGGCATAGTATCATAT+TGG | + | chr3.1:59084810-59084829 | None:intergenic | 30.0% |
| ATATCAGGTGCACATACAAT+TGG | - | chr3.1:59085185-59085204 | MS.gene87652:CDS | 35.0% | |
| ATCCTCTGCTTTACTTAAGT+TGG | - | chr3.1:59084106-59084125 | MS.gene87652:CDS | 35.0% | |
| GACCAAGAGTTGTTCAATAT+TGG | - | chr3.1:59085407-59085426 | MS.gene87652:CDS | 35.0% | |
| GATGATACAAGCAGTTTCAT+AGG | - | chr3.1:59084179-59084198 | MS.gene87652:CDS | 35.0% | |
| GTAGAGACTTTCTAAACAAG+GGG | + | chr3.1:59085265-59085284 | None:intergenic | 35.0% | |
| TCCTCTAGCTGAATTATTGT+TGG | + | chr3.1:59084222-59084241 | None:intergenic | 35.0% | |
| TTCACTATAGACAACAGTTC+CGG | + | chr3.1:59083955-59083974 | None:intergenic | 35.0% | |
| ! | ACATTGTCATTTCCACTTCT+GGG | + | chr3.1:59085299-59085318 | None:intergenic | 35.0% |
| !!! | ATTTTTTAAAGCCTTTGCCG+AGG | - | chr3.1:59085478-59085497 | MS.gene87652:CDS | 35.0% |
| !!! | TTTTTTAAAGCCTTTGCCGA+GGG | - | chr3.1:59085479-59085498 | MS.gene87652:CDS | 35.0% |
| AGCCAACTTAAGTAAAGCAG+AGG | + | chr3.1:59084111-59084130 | None:intergenic | 40.0% | |
| ATTTGAACACTGGAAAGTCG+TGG | + | chr3.1:59084525-59084544 | None:intergenic | 40.0% | |
| CTGTTGTCTATAGTGAACCA+AGG | - | chr3.1:59083958-59083977 | MS.gene87652:CDS | 40.0% | |
| GCAGATGGCAAAAATGAGTT+AGG | - | chr3.1:59083904-59083923 | MS.gene87652:CDS | 40.0% | |
| GCCAACAATAATTCAGCTAG+AGG | - | chr3.1:59084218-59084237 | MS.gene87652:intron | 40.0% | |
| GGATTCAATCACAGCTAGTA+GGG | - | chr3.1:59084921-59084940 | MS.gene87652:intron | 40.0% | |
| GGTTAATTGTGTTGAACGAG+AGG | - | chr3.1:59084638-59084657 | MS.gene87652:intron | 40.0% | |
| GGTTGTTGGAATTTACAGCT+AGG | - | chr3.1:59084865-59084884 | MS.gene87652:intron | 40.0% | |
| TCACATTTACAAAGCAGTCG+TGG | + | chr3.1:59084044-59084063 | None:intergenic | 40.0% | |
| TCACTATAGACAACAGTTCC+GGG | + | chr3.1:59083954-59083973 | None:intergenic | 40.0% | |
| TGAACAACTCTTGGTCTGAA+TGG | + | chr3.1:59085403-59085422 | None:intergenic | 40.0% | |
| TGATGATATCAAAGCCAGTG+TGG | - | chr3.1:59084253-59084272 | MS.gene87652:intron | 40.0% | |
| TGTTGGAATTTACAGCTAGG+AGG | - | chr3.1:59084868-59084887 | MS.gene87652:intron | 40.0% | |
| ! | AGAGCACCTAGATTGAGAAA+GGG | + | chr3.1:59084973-59084992 | None:intergenic | 40.0% |
| ! | CACATTGTCATTTCCACTTC+TGG | + | chr3.1:59085300-59085319 | None:intergenic | 40.0% |
| ! | CATTGTCATTTCCACTTCTG+GGG | + | chr3.1:59085298-59085317 | None:intergenic | 40.0% |
| ! | TCTGCAATATCTGAAGCAGA+TGG | - | chr3.1:59083889-59083908 | MS.gene87652:CDS | 40.0% |
| !! | TAAGAGCATTTACGACTCCT+TGG | + | chr3.1:59083978-59083997 | None:intergenic | 40.0% |
| AAACCCCTTACAGGAAGCAA+TGG | - | chr3.1:59085524-59085543 | MS.gene87652:CDS | 45.0% | |
| AGTAGCATCAAACCCCTTAC+AGG | - | chr3.1:59085515-59085534 | MS.gene87652:CDS | 45.0% | |
| CTGTCCATTGCTTCCTGTAA+GGG | + | chr3.1:59085531-59085550 | None:intergenic | 45.0% | |
| GGGATTCAATCACAGCTAGT+AGG | - | chr3.1:59084920-59084939 | MS.gene87652:intron | 45.0% | |
| GGGTGCAGGAATTGAGTTAT+TGG | + | chr3.1:59084953-59084972 | None:intergenic | 45.0% | |
| TCTAAACAAGGGGTCAACGT+TGG | + | chr3.1:59085255-59085274 | None:intergenic | 45.0% | |
| TCTGTCCATTGCTTCCTGTA+AGG | + | chr3.1:59085532-59085551 | None:intergenic | 45.0% | |
| TGTCCATTGCTTCCTGTAAG+GGG | + | chr3.1:59085530-59085549 | None:intergenic | 45.0% | |
| ! | AGTCGGTGTTTGATAGTCGA+GGG | + | chr3.1:59085330-59085349 | None:intergenic | 45.0% |
| ! | ATGCGCTGATATTCTTGCTC+TGG | - | chr3.1:59084301-59084320 | MS.gene87652:intron | 45.0% |
| !! | ACTCATTTTGACCATGCCCT+CGG | + | chr3.1:59085498-59085517 | None:intergenic | 45.0% |
| !! | GAGAGCACCTAGATTGAGAA+AGG | + | chr3.1:59084974-59084993 | None:intergenic | 45.0% |
| !! | AAATTCAATAATAATTTAAA+TGG | + | chr3.1:59084732-59084751 | None:intergenic | 5.0% |
| ATCAGCGCATGACACAACCT+TGG | + | chr3.1:59084291-59084310 | None:intergenic | 50.0% | |
| CAAAACAAGTGCCCCAGAAG+TGG | - | chr3.1:59085284-59085303 | MS.gene87652:intron | 50.0% | |
| CCAAGCCTACATCCCATGAA+GGG | + | chr3.1:59084894-59084913 | None:intergenic | 50.0% | |
| CCTGCACCCTTTCTCAATCT+AGG | - | chr3.1:59084964-59084983 | MS.gene87652:intron | 50.0% | |
| CCTTCATGGGATGTAGGCTT+GGG | - | chr3.1:59084892-59084911 | MS.gene87652:intron | 50.0% | |
| GGATGTAGGCTTGGGAAGAA+GGG | - | chr3.1:59084900-59084919 | MS.gene87652:intron | 50.0% | |
| TAACCAACGGCTCTCAGTTG+AGG | - | chr3.1:59085008-59085027 | MS.gene87652:intron | 50.0% | |
| TCAGCGCATGACACAACCTT+GGG | + | chr3.1:59084290-59084309 | None:intergenic | 50.0% | |
| TGTGGAGAAATCATGCCCCA+AGG | - | chr3.1:59084271-59084290 | MS.gene87652:intron | 50.0% | |
| ! | CCTAGATTGAGAAAGGGTGC+AGG | + | chr3.1:59084967-59084986 | None:intergenic | 50.0% |
| ! | GAGTCGGTGTTTGATAGTCG+AGG | + | chr3.1:59085331-59085350 | None:intergenic | 50.0% |
| ! | GTCGGTGTTTGATAGTCGAG+GGG | + | chr3.1:59085329-59085348 | None:intergenic | 50.0% |
| !! | CTGTGACGCATCGATTCTGT+TGG | - | chr3.1:59084157-59084176 | MS.gene87652:CDS | 50.0% |
| ACAGCTAGGAGGCCCTTCAT+GGG | - | chr3.1:59084879-59084898 | MS.gene87652:intron | 55.0% | |
| ACGGCTCTCAGTTGAGGACT+TGG | - | chr3.1:59085014-59085033 | MS.gene87652:intron | 55.0% | |
| AGTCCTCAACTGAGAGCCGT+TGG | + | chr3.1:59085014-59085033 | None:intergenic | 55.0% | |
| CAGCGCATGACACAACCTTG+GGG | + | chr3.1:59084289-59084308 | None:intergenic | 55.0% | |
| CCCAAGCCTACATCCCATGA+AGG | + | chr3.1:59084895-59084914 | None:intergenic | 55.0% | |
| CCCTTCATGGGATGTAGGCT+TGG | - | chr3.1:59084891-59084910 | MS.gene87652:intron | 55.0% | |
| GCTCTCAGTTGAGGACTTGG+TGG | - | chr3.1:59085017-59085036 | MS.gene87652:intron | 55.0% | |
| GGGATGTAGGCTTGGGAAGA+AGG | - | chr3.1:59084899-59084918 | MS.gene87652:intron | 55.0% | |
| GGGGCATGATTTCTCCACAC+TGG | + | chr3.1:59084270-59084289 | None:intergenic | 55.0% | |
| TAAAGCCTTTGCCGAGGGCA+TGG | - | chr3.1:59085484-59085503 | MS.gene87652:CDS | 55.0% | |
| TACAGCTAGGAGGCCCTTCA+TGG | - | chr3.1:59084878-59084897 | MS.gene87652:intron | 55.0% | |
| TTTGACCATGCCCTCGGCAA+AGG | + | chr3.1:59085492-59085511 | None:intergenic | 55.0% | |
| !! | GAGGACTTGGTGGCTCTTTC+AGG | - | chr3.1:59085027-59085046 | MS.gene87652:intron | 55.0% |
| CTTCTACTGCAGCAGCTGCC+CGG | - | chr3.1:59083933-59083952 | MS.gene87652:CDS | 60.0% | |
| GGAGGCCCTTCATGGGATGT+AGG | - | chr3.1:59084886-59084905 | MS.gene87652:intron | 60.0% | |
| TGCTCTGGCTGCTCGAGACT+CGG | - | chr3.1:59084316-59084335 | MS.gene87652:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 59083839 | 59085580 | 59083839 | ID=MS.gene87652 |
| chr3.1 | mRNA | 59083839 | 59085580 | 59083839 | ID=MS.gene87652.t1;Parent=MS.gene87652 |
| chr3.1 | exon | 59085360 | 59085580 | 59085360 | ID=MS.gene87652.t1.exon1;Parent=MS.gene87652.t1 |
| chr3.1 | CDS | 59085360 | 59085580 | 59085360 | ID=cds.MS.gene87652.t1;Parent=MS.gene87652.t1 |
| chr3.1 | exon | 59085073 | 59085264 | 59085073 | ID=MS.gene87652.t1.exon2;Parent=MS.gene87652.t1 |
| chr3.1 | CDS | 59085073 | 59085264 | 59085073 | ID=cds.MS.gene87652.t1;Parent=MS.gene87652.t1 |
| chr3.1 | exon | 59084371 | 59084536 | 59084371 | ID=MS.gene87652.t1.exon3;Parent=MS.gene87652.t1 |
| chr3.1 | CDS | 59084371 | 59084536 | 59084371 | ID=cds.MS.gene87652.t1;Parent=MS.gene87652.t1 |
| chr3.1 | exon | 59083839 | 59084227 | 59083839 | ID=MS.gene87652.t1.exon4;Parent=MS.gene87652.t1 |
| chr3.1 | CDS | 59083839 | 59084227 | 59083839 | ID=cds.MS.gene87652.t1;Parent=MS.gene87652.t1 |
| Gene Sequence |
| Protein sequence |
