Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88093.t1 | XP_024638176.1 | 84.4 | 379 | 24 | 1 | 1 | 344 | 370 | 748 | 2.00E-158 | 568.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88093.t1 | F4IP69 | 52.4 | 389 | 138 | 5 | 1 | 344 | 452 | 838 | 1.0e-94 | 348.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88093.t1 | G7JCN0 | 84.4 | 379 | 24 | 1 | 1 | 344 | 482 | 860 | 1.5e-158 | 568.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051247 | MS.gene88093 | 0.803715 | 3.05E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene88093 | 0.812225 | 4.72E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene88093 | 0.812556 | 3.99E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene88093 | 0.82452 | 7.72E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene88093 | 0.802844 | 4.63E-49 | -1.69E-46 |
| MS.gene054236 | MS.gene88093 | 0.813856 | 2.07E-51 | -1.69E-46 |
| MS.gene054472 | MS.gene88093 | 0.805984 | 1.03E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene88093 | 0.817175 | 3.78E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene88093 | 0.822148 | 2.77E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene88093 | 0.802746 | 4.85E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene88093 | 0.811717 | 6.09E-51 | -1.69E-46 |
| MS.gene060312 | MS.gene88093 | 0.802164 | 6.39E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88093.t1 | MTR_4g080110 | 88.391 | 379 | 9 | 1 | 1 | 344 | 482 | 860 | 0.0 | 616 |
| MS.gene88093.t1 | MTR_4g080110 | 87.021 | 339 | 9 | 1 | 1 | 304 | 482 | 820 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88093.t1 | AT2G42700 | 55.412 | 388 | 128 | 5 | 1 | 344 | 394 | 780 | 6.11e-135 | 402 |
| MS.gene88093.t1 | AT2G42700 | 55.412 | 388 | 128 | 5 | 1 | 344 | 452 | 838 | 2.75e-134 | 402 |
| MS.gene88093.t1 | AT2G42700 | 51.559 | 417 | 128 | 6 | 1 | 344 | 452 | 867 | 2.28e-128 | 388 |
Find 80 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATCATTGGATATATTT+TGG | 0.185317 | 4.3:-68570613 | MS.gene88093:CDS |
| CTTATAAACCAATCCCTTTC+CGG | 0.228005 | 4.3:+68570159 | None:intergenic |
| CGTGGATTTGGAAGACTTCT+TGG | 0.236769 | 4.3:-68570058 | MS.gene88093:CDS |
| CGCATTATTAATCGTGGATT+TGG | 0.244667 | 4.3:-68570070 | MS.gene88093:CDS |
| TGCTGATCAAAATGTCATTT+TGG | 0.250911 | 4.3:-68569890 | MS.gene88093:CDS |
| TTGGGATCACACATAAATAA+AGG | 0.293611 | 4.3:-68570687 | MS.gene88093:CDS |
| ATAATGTGGCTGACGCTAAT+AGG | 0.296344 | 4.3:+68570844 | None:intergenic |
| ACACATAAATAAAGGGAAAA+AGG | 0.296465 | 4.3:-68570679 | MS.gene88093:CDS |
| CGGAAAGGGATTGGTTTATA+AGG | 0.334422 | 4.3:-68570158 | MS.gene88093:CDS |
| CAAAGTCTTGCCGCTCAAAT+TGG | 0.342456 | 4.3:-68570735 | MS.gene88093:CDS |
| TAAAGTTGGAGTTGCGTGAT+AGG | 0.353789 | 4.3:-68570294 | MS.gene88093:CDS |
| CTGGGCAAGTACGATGTGCC+TGG | 0.363010 | 4.3:-68570121 | MS.gene88093:CDS |
| GCTTTGCTGTTAATGATCAT+TGG | 0.369744 | 4.3:-68570624 | MS.gene88093:CDS |
| AGGAATCAGATTGCACCAAA+TGG | 0.398223 | 4.3:-68570812 | MS.gene88093:CDS |
| CGATGATCAGTGGGGCAAAT+GGG | 0.417050 | 4.3:-68570374 | MS.gene88093:CDS |
| GTAAATCTAAAGTTTCTAGA+TGG | 0.426555 | 4.3:-68570478 | MS.gene88093:CDS |
| TGTTCCTTAGCAAAGATGAT+TGG | 0.427202 | 4.3:+68570877 | None:intergenic |
| ACGATGATCAGTGGGGCAAA+TGG | 0.432670 | 4.3:-68570375 | MS.gene88093:CDS |
| GACATACTCGATTTACTACT+AGG | 0.434265 | 4.3:-68569533 | MS.gene88093:CDS |
| TAGCAAAGATGATTGGCTCT+TGG | 0.441818 | 4.3:+68570884 | None:intergenic |
| GAACCATAATCACCTGACTA+TGG | 0.444374 | 4.3:+68570035 | None:intergenic |
| AAGACTTCTTGGCCATAGTC+AGG | 0.452598 | 4.3:-68570047 | MS.gene88093:intron |
| CCTGATATAGAGTTACTTGT+TGG | 0.454298 | 4.3:-68569581 | MS.gene88093:CDS |
| CCAACAAGTAACTCTATATC+AGG | 0.457309 | 4.3:+68569581 | None:intergenic |
| TGCCTATGCCGGAAAGGGAT+TGG | 0.459495 | 4.3:-68570167 | MS.gene88093:CDS |
| CATAAATCAGAGTGCTCTGT+TGG | 0.462189 | 4.3:-68570706 | MS.gene88093:CDS |
| ACTGCTAAATGCATCCCATT+TGG | 0.473230 | 4.3:+68570797 | None:intergenic |
| AGAGGAAGCTACCGAAGAGC+TGG | 0.474067 | 4.3:-68570413 | MS.gene88093:CDS |
| ATCATCAATCTCCAGCTCTT+CGG | 0.478313 | 4.3:+68570402 | None:intergenic |
| TGGGATCACACATAAATAAA+GGG | 0.479287 | 4.3:-68570686 | MS.gene88093:CDS |
| TAAGGTATTAGCAAGGGTGC+TGG | 0.480645 | 4.3:-68570140 | MS.gene88093:CDS |
| TTGAGCGGCAAGACTTTGAC+TGG | 0.487236 | 4.3:+68570740 | None:intergenic |
| GGAATCAGATTGCACCAAAT+GGG | 0.504900 | 4.3:-68570811 | MS.gene88093:CDS |
| CTAGGTGCGTCAAGCAAGGC+AGG | 0.505115 | 4.3:-68569624 | MS.gene88093:intron |
| TGGTGACATGCAACTAAAGT+TGG | 0.506816 | 4.3:-68570308 | MS.gene88093:CDS |
| GAAGATGCCTATGCCGGAAA+GGG | 0.513122 | 4.3:-68570172 | MS.gene88093:CDS |
| GATATAGAGTTACTTGTTGG+TGG | 0.514072 | 4.3:-68569578 | MS.gene88093:CDS |
| GGCTACAAGAAGCTATGCGC+AGG | 0.518100 | 4.3:-68570986 | None:intergenic |
| ATAAATCAGAGTGCTCTGTT+GGG | 0.520222 | 4.3:-68570705 | MS.gene88093:CDS |
| TGGTGCAATCTGATTCCTCA+AGG | 0.520506 | 4.3:+68570817 | None:intergenic |
| AAAACTCTGAGCGTAAGCTC+TGG | 0.521670 | 4.3:-68570768 | MS.gene88093:CDS |
| TTTGATGAAGATGCCTATGC+CGG | 0.524421 | 4.3:-68570178 | MS.gene88093:CDS |
| GAATATCATTCTTCCACTGT+GGG | 0.526024 | 4.3:-68570094 | MS.gene88093:CDS |
| AGTAAATCGAGTATGTCATC+AGG | 0.530370 | 4.3:+68569539 | None:intergenic |
| GTCAATGAACCATCCCTCAA+TGG | 0.534394 | 4.3:+68570214 | None:intergenic |
| AACCAATCCCTTTCCGGCAT+AGG | 0.534419 | 4.3:+68570165 | None:intergenic |
| TGGTTTATAAGGTATTAGCA+AGG | 0.534687 | 4.3:-68570147 | MS.gene88093:CDS |
| AAGAAAGAGTCTACCATTGA+GGG | 0.545821 | 4.3:-68570227 | MS.gene88093:CDS |
| GATGGTTCATTGACCGTGGA+AGG | 0.550211 | 4.3:-68570205 | MS.gene88093:CDS |
| GCGTCAAGCAAGGCAGGCAT+TGG | 0.553242 | 4.3:-68569618 | MS.gene88093:CDS |
| ACATACTCGATTTACTACTA+GGG | 0.557665 | 4.3:-68569532 | MS.gene88093:CDS |
| GTTGGAGTTGCGTGATAGGG+TGG | 0.559581 | 4.3:-68570290 | MS.gene88093:CDS |
| AAAGTTGGAGTTGCGTGATA+GGG | 0.562949 | 4.3:-68570293 | MS.gene88093:CDS |
| AAGGTATTAGCAAGGGTGCT+GGG | 0.563585 | 4.3:-68570139 | MS.gene88093:CDS |
| TGAAGATGCCTATGCCGGAA+AGG | 0.565857 | 4.3:-68570173 | MS.gene88093:CDS |
| AAAGAAAGAGTCTACCATTG+AGG | 0.566806 | 4.3:-68570228 | MS.gene88093:CDS |
| TTACCTAGGTGCGTCAAGCA+AGG | 0.577279 | 4.3:-68569628 | MS.gene88093:intron |
| TTCATCAAAACTGCCTTCCA+CGG | 0.577302 | 4.3:+68570192 | None:intergenic |
| TTCCTCAAGGGCTGATAATG+TGG | 0.577356 | 4.3:+68570830 | None:intergenic |
| AGAGCCAATCATCTTTGCTA+AGG | 0.579265 | 4.3:-68570881 | MS.gene88093:CDS |
| GGTTTATAAGGTATTAGCAA+GGG | 0.587394 | 4.3:-68570146 | MS.gene88093:CDS |
| TATGAGATCGCCAATTTGAG+CGG | 0.593438 | 4.3:+68570725 | None:intergenic |
| GTGGGGCGCATTATTAATCG+TGG | 0.594146 | 4.3:-68570076 | MS.gene88093:CDS |
| ATTAATAATGCGCCCCACAG+TGG | 0.599402 | 4.3:+68570081 | None:intergenic |
| TCATCTTTGCTAAGGAACAA+AGG | 0.604133 | 4.3:-68570873 | MS.gene88093:CDS |
| GGTGCAATCTGATTCCTCAA+GGG | 0.607947 | 4.3:+68570818 | None:intergenic |
| GATGATCAGTGGGGCAAATG+GGG | 0.608922 | 4.3:-68570373 | MS.gene88093:CDS |
| GGCAAATGGGGTGATGAAGA+CGG | 0.614768 | 4.3:-68570361 | MS.gene88093:CDS |
| TATTAGCAAGTTAAAATCAG+AGG | 0.617374 | 4.3:-68570431 | MS.gene88093:CDS |
| TGGGCAAGTACGATGTGCCT+GGG | 0.621646 | 4.3:-68570120 | MS.gene88093:CDS |
| GAAGAATGATATTCTAACCC+AGG | 0.636433 | 4.3:+68570103 | None:intergenic |
| AGCCACATTATCAGCCCTTG+AGG | 0.636835 | 4.3:-68570832 | MS.gene88093:CDS |
| AGAATATCATTCTTCCACTG+TGG | 0.644306 | 4.3:-68570095 | MS.gene88093:CDS |
| GAGGGATGGTTCATTGACCG+TGG | 0.645678 | 4.3:-68570209 | MS.gene88093:CDS |
| AAGAGTCTACCATTGAGGGA+TGG | 0.654481 | 4.3:-68570223 | MS.gene88093:CDS |
| GCTACAAGAAGCTATGCGCA+GGG | 0.655269 | 4.3:-68570985 | None:intergenic |
| CATACTCGATTTACTACTAG+GGG | 0.672095 | 4.3:-68569531 | MS.gene88093:CDS |
| AATATCATTCTTCCACTGTG+GGG | 0.691146 | 4.3:-68570093 | MS.gene88093:CDS |
| AGGCAGGCATTGGTTGACAG+CGG | 0.705952 | 4.3:-68569608 | MS.gene88093:CDS |
| ATGGGGTGATGAAGACGGTG+AGG | 0.723975 | 4.3:-68570356 | MS.gene88093:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATGAACAAGTATA+TGG | - | chr4.3:68570158-68570177 | MS.gene88093:CDS | 15.0% |
| !!! | AATGATCATTGGATATATTT+TGG | - | chr4.3:68569873-68569892 | MS.gene88093:CDS | 20.0% |
| !!! | TATATTACTTTTCTTTACCT+AGG | - | chr4.3:68570844-68570863 | MS.gene88093:CDS | 20.0% |
| ! | ACACATAAATAAAGGGAAAA+AGG | - | chr4.3:68569807-68569826 | MS.gene88093:intron | 25.0% |
| ! | TATTAGCAAGTTAAAATCAG+AGG | - | chr4.3:68570055-68570074 | MS.gene88093:CDS | 25.0% |
| ! | TTAGAAAATATTAGCCAAGT+TGG | + | chr4.3:68570728-68570747 | None:intergenic | 25.0% |
| !! | GTAAATCTAAAGTTTCTAGA+TGG | - | chr4.3:68570008-68570027 | MS.gene88093:intron | 25.0% |
| ACATACTCGATTTACTACTA+GGG | - | chr4.3:68570954-68570973 | MS.gene88093:CDS | 30.0% | |
| ATAGACAGTAAGGATAGAAA+AGG | + | chr4.3:68570549-68570568 | None:intergenic | 30.0% | |
| TAGACAGTAAGGATAGAAAA+GGG | + | chr4.3:68570548-68570567 | None:intergenic | 30.0% | |
| TGATCCTTTATTCGCATAAA+GGG | - | chr4.3:68570805-68570824 | MS.gene88093:CDS | 30.0% | |
| TGGGATCACACATAAATAAA+GGG | - | chr4.3:68569800-68569819 | MS.gene88093:intron | 30.0% | |
| TTGATCCTTTATTCGCATAA+AGG | - | chr4.3:68570804-68570823 | MS.gene88093:CDS | 30.0% | |
| TTGGGATCACACATAAATAA+AGG | - | chr4.3:68569799-68569818 | MS.gene88093:intron | 30.0% | |
| ! | GGTTTATAAGGTATTAGCAA+GGG | - | chr4.3:68570340-68570359 | MS.gene88093:CDS | 30.0% |
| ! | TGGTTTATAAGGTATTAGCA+AGG | - | chr4.3:68570339-68570358 | MS.gene88093:CDS | 30.0% |
| !! | TGCTGATCAAAATGTCATTT+TGG | - | chr4.3:68570596-68570615 | MS.gene88093:intron | 30.0% |
| !!! | ATCATTGGATATATTTTGGC+AGG | - | chr4.3:68569877-68569896 | MS.gene88093:CDS | 30.0% |
| AAAGAAAGAGTCTACCATTG+AGG | - | chr4.3:68570258-68570277 | MS.gene88093:CDS | 35.0% | |
| AACCAACTAGTGTTATGTGT+AGG | + | chr4.3:68570701-68570720 | None:intergenic | 35.0% | |
| AAGAAAGAGTCTACCATTGA+GGG | - | chr4.3:68570259-68570278 | MS.gene88093:CDS | 35.0% | |
| AATATCATTCTTCCACTGTG+GGG | - | chr4.3:68570393-68570412 | MS.gene88093:CDS | 35.0% | |
| ACCAACTAGTGTTATGTGTA+GGG | + | chr4.3:68570700-68570719 | None:intergenic | 35.0% | |
| AGAATATCATTCTTCCACTG+TGG | - | chr4.3:68570391-68570410 | MS.gene88093:CDS | 35.0% | |
| AGTAAATCGAGTATGTCATC+AGG | + | chr4.3:68570950-68570969 | None:intergenic | 35.0% | |
| CAGCATTTGTATAGACAGTA+AGG | + | chr4.3:68570559-68570578 | None:intergenic | 35.0% | |
| CATACTCGATTTACTACTAG+GGG | - | chr4.3:68570955-68570974 | MS.gene88093:CDS | 35.0% | |
| CCAACAAGTAACTCTATATC+AGG | + | chr4.3:68570908-68570927 | None:intergenic | 35.0% | |
| CCTGATATAGAGTTACTTGT+TGG | - | chr4.3:68570905-68570924 | MS.gene88093:CDS | 35.0% | |
| CGCATTATTAATCGTGGATT+TGG | - | chr4.3:68570416-68570435 | MS.gene88093:CDS | 35.0% | |
| CTAAATCAAAAGTCCTGCAT+AGG | + | chr4.3:68570482-68570501 | None:intergenic | 35.0% | |
| CTTATAAACCAATCCCTTTC+CGG | + | chr4.3:68570330-68570349 | None:intergenic | 35.0% | |
| GAAGAATGATATTCTAACCC+AGG | + | chr4.3:68570386-68570405 | None:intergenic | 35.0% | |
| GAATATCATTCTTCCACTGT+GGG | - | chr4.3:68570392-68570411 | MS.gene88093:CDS | 35.0% | |
| GACATACTCGATTTACTACT+AGG | - | chr4.3:68570953-68570972 | MS.gene88093:CDS | 35.0% | |
| GTTACCCTTTATGCGAATAA+AGG | + | chr4.3:68570812-68570831 | None:intergenic | 35.0% | |
| TAGGGAAATAGAAAGAAGGA+TGG | + | chr4.3:68570682-68570701 | None:intergenic | 35.0% | |
| TCATCTTTGCTAAGGAACAA+AGG | - | chr4.3:68569613-68569632 | MS.gene88093:CDS | 35.0% | |
| TGTGTAGGGAAATAGAAAGA+AGG | + | chr4.3:68570686-68570705 | None:intergenic | 35.0% | |
| TGTTCCTTAGCAAAGATGAT+TGG | + | chr4.3:68569612-68569631 | None:intergenic | 35.0% | |
| ! | ATAAATCAGAGTGCTCTGTT+GGG | - | chr4.3:68569781-68569800 | MS.gene88093:intron | 35.0% |
| ! | GATATAGAGTTACTTGTTGG+TGG | - | chr4.3:68570908-68570927 | MS.gene88093:CDS | 35.0% |
| ! | TACAGTACAGATGAGTTTTC+AGG | + | chr4.3:68569988-68570007 | None:intergenic | 35.0% |
| !! | ACATTTTGATCAGCAAGACT+TGG | + | chr4.3:68570591-68570610 | None:intergenic | 35.0% |
| !! | ATGATTTTGACGATGATCAG+TGG | - | chr4.3:68570102-68570121 | MS.gene88093:CDS | 35.0% |
| !! | GCTTTGCTGTTAATGATCAT+TGG | - | chr4.3:68569862-68569881 | MS.gene88093:CDS | 35.0% |
| !! | TGATTTTGACGATGATCAGT+GGG | - | chr4.3:68570103-68570122 | MS.gene88093:CDS | 35.0% |
| !!! | GTCATTTTGGTGTTTGTCAT+CGG | - | chr4.3:68570609-68570628 | MS.gene88093:intron | 35.0% |
| !!! | TCATTTTGGTGTTTGTCATC+GGG | - | chr4.3:68570610-68570629 | MS.gene88093:CDS | 35.0% |
| AAAGTTGGAGTTGCGTGATA+GGG | - | chr4.3:68570193-68570212 | MS.gene88093:CDS | 40.0% | |
| ACTGCTAAATGCATCCCATT+TGG | + | chr4.3:68569692-68569711 | None:intergenic | 40.0% | |
| ACTGTCTATACAAATGCTGC+AGG | - | chr4.3:68570560-68570579 | MS.gene88093:intron | 40.0% | |
| AGAGCCAATCATCTTTGCTA+AGG | - | chr4.3:68569605-68569624 | MS.gene88093:CDS | 40.0% | |
| AGGAATCAGATTGCACCAAA+TGG | - | chr4.3:68569674-68569693 | MS.gene88093:intron | 40.0% | |
| AGGGAAAAAGGATATCTCGA+AGG | - | chr4.3:68569819-68569838 | MS.gene88093:intron | 40.0% | |
| ATAATGTGGCTGACGCTAAT+AGG | + | chr4.3:68569645-68569664 | None:intergenic | 40.0% | |
| ATCATCAATCTCCAGCTCTT+CGG | + | chr4.3:68570087-68570106 | None:intergenic | 40.0% | |
| CAAAAGTCCTGCATAGGTTA+AGG | + | chr4.3:68570476-68570495 | None:intergenic | 40.0% | |
| GAACCATAATCACCTGACTA+TGG | + | chr4.3:68570454-68570473 | None:intergenic | 40.0% | |
| GGAAATAGAAAGAAGGATGG+AGG | + | chr4.3:68570679-68570698 | None:intergenic | 40.0% | |
| GGAATCAGATTGCACCAAAT+GGG | - | chr4.3:68569675-68569694 | MS.gene88093:intron | 40.0% | |
| GGGAAAAAGGATATCTCGAA+GGG | - | chr4.3:68569820-68569839 | MS.gene88093:intron | 40.0% | |
| GGTGAAATTCTCAAATGCCT+TGG | - | chr4.3:68570650-68570669 | MS.gene88093:CDS | 40.0% | |
| TAAAGTTGGAGTTGCGTGAT+AGG | - | chr4.3:68570192-68570211 | MS.gene88093:CDS | 40.0% | |
| TATGAGATCGCCAATTTGAG+CGG | + | chr4.3:68569764-68569783 | None:intergenic | 40.0% | |
| TATGGTTCCTTAACCTATGC+AGG | - | chr4.3:68570466-68570485 | MS.gene88093:CDS | 40.0% | |
| TCCCTACACATAACACTAGT+TGG | - | chr4.3:68570696-68570715 | MS.gene88093:CDS | 40.0% | |
| TGGTGACATGCAACTAAAGT+TGG | - | chr4.3:68570178-68570197 | MS.gene88093:CDS | 40.0% | |
| TTCATCAAAACTGCCTTCCA+CGG | + | chr4.3:68570297-68570316 | None:intergenic | 40.0% | |
| TTTGATGAAGATGCCTATGC+CGG | - | chr4.3:68570308-68570327 | MS.gene88093:CDS | 40.0% | |
| ! | CATAAATCAGAGTGCTCTGT+TGG | - | chr4.3:68569780-68569799 | MS.gene88093:intron | 40.0% |
| ! | CTAGTTGGTTTCTACCAACT+TGG | - | chr4.3:68570711-68570730 | MS.gene88093:CDS | 40.0% |
| ! | TAGCAAAGATGATTGGCTCT+TGG | + | chr4.3:68569605-68569624 | None:intergenic | 40.0% |
| !! | CGGAAAGGGATTGGTTTATA+AGG | - | chr4.3:68570328-68570347 | MS.gene88093:CDS | 40.0% |
| !! | GATTTTGACGATGATCAGTG+GGG | - | chr4.3:68570104-68570123 | MS.gene88093:CDS | 40.0% |
| !! | TTCAGGAAGAGCATCAACAA+CGG | + | chr4.3:68569971-68569990 | None:intergenic | 40.0% |
| !! | TTTGTCATCGGGGGTATTAA+TGG | - | chr4.3:68570621-68570640 | MS.gene88093:CDS | 40.0% |
| !!! | ATTTTGGTGTTTGTCATCGG+GGG | - | chr4.3:68570612-68570631 | MS.gene88093:CDS | 40.0% |
| !!! | CATTTTGGTGTTTGTCATCG+GGG | - | chr4.3:68570611-68570630 | MS.gene88093:CDS | 40.0% |
| AAAACTCTGAGCGTAAGCTC+TGG | - | chr4.3:68569718-68569737 | MS.gene88093:intron | 45.0% | |
| AAGACTTCTTGGCCATAGTC+AGG | - | chr4.3:68570439-68570458 | MS.gene88093:CDS | 45.0% | |
| AAGAGTCTACCATTGAGGGA+TGG | - | chr4.3:68570263-68570282 | MS.gene88093:CDS | 45.0% | |
| ATTAATAATGCGCCCCACAG+TGG | + | chr4.3:68570408-68570427 | None:intergenic | 45.0% | |
| CAAAGTCTTGCCGCTCAAAT+TGG | - | chr4.3:68569751-68569770 | MS.gene88093:intron | 45.0% | |
| CGTGGATTTGGAAGACTTCT+TGG | - | chr4.3:68570428-68570447 | MS.gene88093:CDS | 45.0% | |
| CGTTCCTCTTGCCAAGAAAA+TGG | + | chr4.3:68569934-68569953 | None:intergenic | 45.0% | |
| GGTGCAATCTGATTCCTCAA+GGG | + | chr4.3:68569671-68569690 | None:intergenic | 45.0% | |
| GTCAATGAACCATCCCTCAA+TGG | + | chr4.3:68570275-68570294 | None:intergenic | 45.0% | |
| TGGCCATAGTCAGGTGATTA+TGG | - | chr4.3:68570448-68570467 | MS.gene88093:CDS | 45.0% | |
| TGGTGCAATCTGATTCCTCA+AGG | + | chr4.3:68569672-68569691 | None:intergenic | 45.0% | |
| ! | GGTCAGAATTTTCCAACAGC+TGG | - | chr4.3:68569898-68569917 | MS.gene88093:CDS | 45.0% |
| ! | TAAGGTATTAGCAAGGGTGC+TGG | - | chr4.3:68570346-68570365 | MS.gene88093:CDS | 45.0% |
| ! | TTCCTCAAGGGCTGATAATG+TGG | + | chr4.3:68569659-68569678 | None:intergenic | 45.0% |
| !! | AAGGTATTAGCAAGGGTGCT+GGG | - | chr4.3:68570347-68570366 | MS.gene88093:CDS | 45.0% |
| !! | GTTCTGATGGGCCATTTTCT+TGG | - | chr4.3:68569920-68569939 | MS.gene88093:intron | 45.0% |
| !! | TTCCAACAGCTGGTTCTGAT+GGG | - | chr4.3:68569908-68569927 | MS.gene88093:intron | 45.0% |
| !! | TTTCCAACAGCTGGTTCTGA+TGG | - | chr4.3:68569907-68569926 | MS.gene88093:CDS | 45.0% |
| !!! | ATTATCATATTTTTTAAAAA+TGG | + | chr4.3:68570509-68570528 | None:intergenic | 5.0% |
| AACCAATCCCTTTCCGGCAT+AGG | + | chr4.3:68570324-68570343 | None:intergenic | 50.0% | |
| AAGAAGGATGGAGGAGACCA+AGG | + | chr4.3:68570670-68570689 | None:intergenic | 50.0% | |
| ACGATGATCAGTGGGGCAAA+TGG | - | chr4.3:68570111-68570130 | MS.gene88093:CDS | 50.0% | |
| AGCCACATTATCAGCCCTTG+AGG | - | chr4.3:68569654-68569673 | MS.gene88093:intron | 50.0% | |
| CGATGATCAGTGGGGCAAAT+GGG | - | chr4.3:68570112-68570131 | MS.gene88093:CDS | 50.0% | |
| GAAGATGCCTATGCCGGAAA+GGG | - | chr4.3:68570314-68570333 | MS.gene88093:CDS | 50.0% | |
| GATGATCAGTGGGGCAAATG+GGG | - | chr4.3:68570113-68570132 | MS.gene88093:CDS | 50.0% | |
| GATGGTTCATTGACCGTGGA+AGG | - | chr4.3:68570281-68570300 | MS.gene88093:CDS | 50.0% | |
| GGCAAATGGGGTGATGAAGA+CGG | - | chr4.3:68570125-68570144 | MS.gene88093:CDS | 50.0% | |
| GTGGGGCGCATTATTAATCG+TGG | - | chr4.3:68570410-68570429 | MS.gene88093:CDS | 50.0% | |
| TGAAGATGCCTATGCCGGAA+AGG | - | chr4.3:68570313-68570332 | MS.gene88093:CDS | 50.0% | |
| TTACCTAGGTGCGTCAAGCA+AGG | - | chr4.3:68570858-68570877 | MS.gene88093:CDS | 50.0% | |
| TTGAGCGGCAAGACTTTGAC+TGG | + | chr4.3:68569749-68569768 | None:intergenic | 50.0% | |
| !! | CGGGGGTATTAATGGACTAG+AGG | - | chr4.3:68570629-68570648 | MS.gene88093:CDS | 50.0% |
| !! | TGGGCCATTTTCTTGGCAAG+AGG | - | chr4.3:68569927-68569946 | MS.gene88093:intron | 50.0% |
| AGAGGAAGCTACCGAAGAGC+TGG | - | chr4.3:68570073-68570092 | MS.gene88093:CDS | 55.0% | |
| ATGGGGTGATGAAGACGGTG+AGG | - | chr4.3:68570130-68570149 | MS.gene88093:CDS | 55.0% | |
| GAGGGATGGTTCATTGACCG+TGG | - | chr4.3:68570277-68570296 | MS.gene88093:CDS | 55.0% | |
| GTTGGAGTTGCGTGATAGGG+TGG | - | chr4.3:68570196-68570215 | MS.gene88093:CDS | 55.0% | |
| TGCCTATGCCGGAAAGGGAT+TGG | - | chr4.3:68570319-68570338 | MS.gene88093:CDS | 55.0% | |
| TGGGCAAGTACGATGTGCCT+GGG | - | chr4.3:68570366-68570385 | MS.gene88093:CDS | 55.0% | |
| !! | AGGCAGGCATTGGTTGACAG+CGG | - | chr4.3:68570878-68570897 | MS.gene88093:CDS | 55.0% |
| CTAGGTGCGTCAAGCAAGGC+AGG | - | chr4.3:68570862-68570881 | MS.gene88093:CDS | 60.0% | |
| CTGCCTTGCTTGACGCACCT+AGG | + | chr4.3:68570864-68570883 | None:intergenic | 60.0% | |
| CTGGGCAAGTACGATGTGCC+TGG | - | chr4.3:68570365-68570384 | MS.gene88093:CDS | 60.0% | |
| GCGTCAAGCAAGGCAGGCAT+TGG | - | chr4.3:68570868-68570887 | MS.gene88093:CDS | 60.0% | |
| GGCCCATCAGAACCAGCTGT+TGG | + | chr4.3:68569913-68569932 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 68569514 | 68570994 | 68569514 | ID=MS.gene88093 |
| chr4.3 | mRNA | 68569514 | 68570994 | 68569514 | ID=MS.gene88093.t1;Parent=MS.gene88093 |
| chr4.3 | exon | 68570610 | 68570994 | 68570610 | ID=MS.gene88093.t1.exon1;Parent=MS.gene88093.t1 |
| chr4.3 | CDS | 68570610 | 68570994 | 68570610 | ID=cds.MS.gene88093.t1;Parent=MS.gene88093.t1 |
| chr4.3 | exon | 68570048 | 68570499 | 68570048 | ID=MS.gene88093.t1.exon2;Parent=MS.gene88093.t1 |
| chr4.3 | CDS | 68570048 | 68570499 | 68570048 | ID=cds.MS.gene88093.t1;Parent=MS.gene88093.t1 |
| chr4.3 | exon | 68569858 | 68569926 | 68569858 | ID=MS.gene88093.t1.exon3;Parent=MS.gene88093.t1 |
| chr4.3 | CDS | 68569858 | 68569926 | 68569858 | ID=cds.MS.gene88093.t1;Parent=MS.gene88093.t1 |
| chr4.3 | exon | 68569514 | 68569642 | 68569514 | ID=MS.gene88093.t1.exon4;Parent=MS.gene88093.t1 |
| chr4.3 | CDS | 68569514 | 68569642 | 68569514 | ID=cds.MS.gene88093.t1;Parent=MS.gene88093.t1 |
| Gene Sequence |
| Protein sequence |
