Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88557.t1 | RHN78313.1 | 94.9 | 1424 | 72 | 1 | 1 | 1424 | 1 | 1423 | 0.00E+00 | 2621.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88557.t1 | A4L9P7 | 24.2 | 1133 | 720 | 34 | 76 | 1161 | 78 | 1118 | 2.2e-66 | 256.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88557.t1 | A0A396JPV6 | 94.9 | 1424 | 72 | 1 | 1 | 1424 | 1 | 1423 | 0.0e+00 | 2621.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88557 | MS.gene064351 | PPI |
| MS.gene88557 | MS.gene92710 | PPI |
| MS.gene88557 | MS.gene067033 | PPI |
| MS.gene88557 | MS.gene75575 | PPI |
| MS.gene88557 | MS.gene043645 | PPI |
| MS.gene88557 | MS.gene035825 | PPI |
| MS.gene88557 | MS.gene045235 | PPI |
| MS.gene88557 | MS.gene045232 | PPI |
| MS.gene88557 | MS.gene043643 | PPI |
| MS.gene88557 | MS.gene035828 | PPI |
| MS.gene88557 | MS.gene46640 | PPI |
| MS.gene88557 | MS.gene045233 | PPI |
| MS.gene88557 | MS.gene73093 | PPI |
| MS.gene88557 | MS.gene95527 | PPI |
| MS.gene88557 | MS.gene035826 | PPI |
| MS.gene88557 | MS.gene99872 | PPI |
| MS.gene88557 | MS.gene064353 | PPI |
| MS.gene88557 | MS.gene043593 | PPI |
| MS.gene88557 | MS.gene043595 | PPI |
| MS.gene88557 | MS.gene79130 | PPI |
| MS.gene88557 | MS.gene77911 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88557.t1 | MTR_1g037280 | 94.402 | 1429 | 74 | 2 | 1 | 1424 | 1 | 1428 | 0.0 | 2690 |
| MS.gene88557.t1 | MTR_1g037280 | 94.839 | 1395 | 71 | 1 | 1 | 1395 | 1 | 1394 | 0.0 | 2643 |
| MS.gene88557.t1 | MTR_1g037280 | 94.767 | 1395 | 71 | 2 | 1 | 1395 | 1 | 1393 | 0.0 | 2637 |
| MS.gene88557.t1 | MTR_2g027090 | 32.274 | 1227 | 717 | 31 | 9 | 1212 | 9 | 1144 | 6.14e-167 | 545 |
| MS.gene88557.t1 | MTR_4g134080 | 31.441 | 1180 | 697 | 29 | 6 | 1162 | 14 | 1104 | 1.16e-166 | 543 |
| MS.gene88557.t1 | MTR_4g134080 | 31.441 | 1180 | 697 | 29 | 6 | 1162 | 14 | 1104 | 1.51e-166 | 543 |
| MS.gene88557.t1 | MTR_4g134080 | 31.441 | 1180 | 697 | 29 | 6 | 1162 | 14 | 1104 | 2.77e-166 | 543 |
| MS.gene88557.t1 | MTR_1g014300 | 32.381 | 210 | 127 | 3 | 25 | 232 | 39 | 235 | 3.85e-30 | 120 |
| MS.gene88557.t1 | MTR_1g014270 | 36.782 | 174 | 105 | 2 | 61 | 232 | 53 | 223 | 6.11e-29 | 126 |
| MS.gene88557.t1 | MTR_3g106100 | 34.503 | 171 | 111 | 1 | 62 | 232 | 54 | 223 | 7.43e-27 | 119 |
| MS.gene88557.t1 | MTR_4g006875 | 33.537 | 164 | 108 | 1 | 69 | 232 | 26 | 188 | 2.89e-25 | 114 |
| MS.gene88557.t1 | MTR_4g006875 | 33.537 | 164 | 108 | 1 | 69 | 232 | 64 | 226 | 3.55e-25 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88557.t1 | AT1G77600 | 41.715 | 1213 | 600 | 17 | 1 | 1181 | 1 | 1138 | 0.0 | 884 |
| MS.gene88557.t1 | AT1G77600 | 41.715 | 1213 | 600 | 17 | 1 | 1181 | 1 | 1138 | 0.0 | 883 |
| MS.gene88557.t1 | AT1G77600 | 41.239 | 1227 | 600 | 18 | 1 | 1181 | 1 | 1152 | 0.0 | 871 |
| MS.gene88557.t1 | AT5G47690 | 34.199 | 1155 | 646 | 30 | 23 | 1152 | 22 | 1087 | 1.10e-172 | 559 |
| MS.gene88557.t1 | AT5G47690 | 34.199 | 1155 | 646 | 30 | 23 | 1152 | 22 | 1087 | 1.36e-172 | 559 |
| MS.gene88557.t1 | AT5G47690 | 34.199 | 1155 | 646 | 30 | 23 | 1152 | 22 | 1087 | 1.57e-172 | 558 |
| MS.gene88557.t1 | AT5G47690 | 31.506 | 1076 | 619 | 31 | 109 | 1152 | 1 | 990 | 1.73e-139 | 466 |
| MS.gene88557.t1 | AT4G31880 | 38.150 | 173 | 105 | 2 | 60 | 232 | 52 | 222 | 1.63e-33 | 140 |
| MS.gene88557.t1 | AT4G31880 | 38.150 | 173 | 105 | 2 | 60 | 232 | 52 | 222 | 1.71e-33 | 140 |
| MS.gene88557.t1 | AT1G15940 | 39.412 | 170 | 102 | 1 | 62 | 231 | 58 | 226 | 8.77e-32 | 135 |
| MS.gene88557.t1 | AT1G80810 | 39.429 | 175 | 105 | 1 | 60 | 234 | 54 | 227 | 9.35e-32 | 134 |
| MS.gene88557.t1 | AT1G80810 | 39.655 | 174 | 104 | 1 | 60 | 233 | 2 | 174 | 1.97e-31 | 134 |
| MS.gene88557.t1 | AT1G80810 | 39.655 | 174 | 104 | 1 | 60 | 233 | 2 | 174 | 1.97e-31 | 134 |
| MS.gene88557.t1 | AT1G80810 | 39.655 | 174 | 104 | 1 | 60 | 233 | 2 | 174 | 1.99e-31 | 134 |
| MS.gene88557.t1 | AT1G80810 | 40.116 | 172 | 102 | 1 | 62 | 233 | 56 | 226 | 2.67e-31 | 133 |
Find 229 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGATGACGGTGGATTTA+AGG | 0.152329 | 1.4:+22823106 | MS.gene88557:CDS |
| CTTACTGCAAATATTCATTT+TGG | 0.158706 | 1.4:-22833699 | None:intergenic |
| AAGAGATGCCACTTGTTTAT+TGG | 0.186396 | 1.4:+22834003 | MS.gene88557:CDS |
| AAAGGCACTGAATACTATTT+TGG | 0.215599 | 1.4:+22820337 | MS.gene88557:CDS |
| GTTTGATCAGATGGAGTATT+TGG | 0.219701 | 1.4:+22828885 | MS.gene88557:intron |
| TAAACAAGTGGCATCTCTTT+TGG | 0.230720 | 1.4:-22833999 | None:intergenic |
| TATTGGTTTGTTTGCGGATC+TGG | 0.235562 | 1.4:+22818082 | MS.gene88557:CDS |
| GTCTATGTGGCAAATCCTTT+TGG | 0.236592 | 1.4:+22819540 | MS.gene88557:CDS |
| GGACAATGATGTTCCCTCTT+TGG | 0.239274 | 1.4:-22836030 | None:intergenic |
| AATAGCAGAGACCGCAAATT+TGG | 0.243915 | 1.4:-22827563 | None:intergenic |
| CCCACGAAGCAGAACATTAA+TGG | 0.256854 | 1.4:+22830164 | MS.gene88557:CDS |
| TCAATCAGCTTGTCATTTAC+AGG | 0.257752 | 1.4:-22825813 | None:intergenic |
| GTATCTTTGAAGTTGTTTCT+AGG | 0.258326 | 1.4:-22834073 | None:intergenic |
| ACCCCTCAGCGCGGAGAATT+TGG | 0.260462 | 1.4:+22828461 | MS.gene88557:CDS |
| CAAGTGCCTCCGTCTGATTC+TGG | 0.266339 | 1.4:+22833821 | MS.gene88557:CDS |
| ATGGTGAAGCGGAAAATTTC+AGG | 0.268425 | 1.4:-22831550 | None:intergenic |
| TGTTTATCAGATGGAGTCTT+TGG | 0.268530 | 1.4:+22828409 | MS.gene88557:intron |
| CAATTACTTGAATAATCTTC+TGG | 0.278526 | 1.4:-22828282 | None:intergenic |
| TGAAAGACTTAGGGATAAAA+AGG | 0.284745 | 1.4:+22819887 | MS.gene88557:CDS |
| GAATGAGATGATAAACTATT+TGG | 0.286082 | 1.4:+22820449 | MS.gene88557:CDS |
| GGCAATACGGAAGAAATTAA+AGG | 0.286256 | 1.4:+22820470 | MS.gene88557:CDS |
| GATGTATTTAAACTCATTAT+TGG | 0.292432 | 1.4:+22818065 | MS.gene88557:CDS |
| CCCAACCATTATGCAAAATC+TGG | 0.294391 | 1.4:+22828192 | MS.gene88557:CDS |
| ACATATGGCAGAGTTTATTA+AGG | 0.299383 | 1.4:+22832668 | MS.gene88557:CDS |
| CAAGTACTTGAATAATCTTC+TGG | 0.303160 | 1.4:-22828757 | None:intergenic |
| AGCTGAACACCCTAGTTTGC+AGG | 0.303496 | 1.4:+22819061 | MS.gene88557:CDS |
| ACAAGTTATTATCTTTGATT+TGG | 0.303962 | 1.4:-22821817 | None:intergenic |
| CAAAGATACATGTGGCTCTA+AGG | 0.312039 | 1.4:+22834087 | MS.gene88557:CDS |
| CTCAAACTCATCTCCGATAT+CGG | 0.315949 | 1.4:+22817146 | MS.gene88557:CDS |
| ACCTGAGCAGCTTCTGTTGA+AGG | 0.332104 | 1.4:+22819753 | MS.gene88557:intron |
| CAATGCTCTGTTCCAGATCT+TGG | 0.333888 | 1.4:+22828701 | MS.gene88557:CDS |
| CTTCTTTCTCCTGCAGGCAT+TGG | 0.334133 | 1.4:+22832954 | MS.gene88557:CDS |
| TTACAAACTACATACTTTGA+TGG | 0.335176 | 1.4:-22821891 | None:intergenic |
| CAGATCCCAGAGCATGGAAT+TGG | 0.335494 | 1.4:+22820220 | MS.gene88557:intron |
| GTTTGTTCCCTTGAAACTAA+TGG | 0.338281 | 1.4:+22819854 | MS.gene88557:CDS |
| TTCCTCGCTCTCATTCAAAA+TGG | 0.348716 | 1.4:-22818629 | None:intergenic |
| TCGGTTAAAAGCTGTTATTT+TGG | 0.349900 | 1.4:+22819386 | MS.gene88557:CDS |
| AAACTTGAAAGATAATTTCA+TGG | 0.351251 | 1.4:-22819143 | None:intergenic |
| GAAGAACCAACTTTCACAAT+TGG | 0.354302 | 1.4:+22821863 | MS.gene88557:CDS |
| TTCAAAACGGGTTAAAGTAT+TGG | 0.359595 | 1.4:+22818127 | MS.gene88557:CDS |
| CTGTTCGCGGCTGAGGAGAC+TGG | 0.364886 | 1.4:-22817735 | None:intergenic |
| TCCATTAATGTTCTGCTTCG+TGG | 0.366746 | 1.4:-22830165 | None:intergenic |
| GACAGAGACGCCGTGGGCTG+CGG | 0.369037 | 1.4:+22819105 | MS.gene88557:CDS |
| CTTAAATCCACCGTCATCAT+TGG | 0.371498 | 1.4:-22823105 | None:intergenic |
| ACCTGCTCGCAAGGGTCAAC+AGG | 0.371549 | 1.4:+22833664 | MS.gene88557:CDS |
| CCATTAATGTTCTGCTTCGT+GGG | 0.374198 | 1.4:-22830164 | None:intergenic |
| ATAAGGATTGCAAGGAGTTC+AGG | 0.374450 | 1.4:+22820119 | MS.gene88557:CDS |
| TTTGATGCTTTGCTATGATA+AGG | 0.381462 | 1.4:+22820102 | MS.gene88557:CDS |
| CGATATTTCTTCGATTAAGC+TGG | 0.384862 | 1.4:-22819202 | None:intergenic |
| CTGCACAAGCTGGTTGAAAT+TGG | 0.386106 | 1.4:+22833177 | MS.gene88557:CDS |
| ATCCAATTTGTAGGCTGATC+AGG | 0.387190 | 1.4:+22819356 | MS.gene88557:intron |
| TCTCTACTTGGGAAACTGTC+TGG | 0.389430 | 1.4:-22833743 | None:intergenic |
| TCCACTCTTCTTTCTCCTGC+AGG | 0.391465 | 1.4:+22832948 | MS.gene88557:CDS |
| CGACAACCTTCTTCTGTTGA+AGG | 0.394170 | 1.4:+22832714 | MS.gene88557:CDS |
| ACATACCTTTGCGATCAAAA+TGG | 0.394400 | 1.4:-22831569 | None:intergenic |
| GATGGACTTCTTGTAAAGAT+TGG | 0.395454 | 1.4:+22822981 | MS.gene88557:CDS |
| CTAGAGAGAATGTGCTTACA+TGG | 0.396271 | 1.4:+22827526 | MS.gene88557:CDS |
| TGATTACCCTGCATATGTTT+TGG | 0.397914 | 1.4:+22832746 | MS.gene88557:CDS |
| CCGTCTGATTCTGGATCAGT+TGG | 0.397960 | 1.4:+22833830 | MS.gene88557:CDS |
| AAGTGTATGCTGACATTTGT+AGG | 0.399605 | 1.4:+22832829 | MS.gene88557:CDS |
| CACTGAATTATTTCGAATCA+AGG | 0.401173 | 1.4:+22817882 | MS.gene88557:CDS |
| CAAGAACCAATTCCATGCTC+TGG | 0.401194 | 1.4:-22820226 | None:intergenic |
| ATGTTCCCTCTTTGGCTGCT+AGG | 0.402349 | 1.4:-22836022 | None:intergenic |
| CTGATAGATGCTGTGGTTTG+TGG | 0.404803 | 1.4:+22817805 | MS.gene88557:CDS |
| GTATTCGTTATTTCTCTACT+TGG | 0.409687 | 1.4:-22833755 | None:intergenic |
| GTGGCGGTCTTCTTCAGCAT+GGG | 0.414521 | 1.4:+22817824 | MS.gene88557:CDS |
| TCAATTTGAGATCCAAGATC+TGG | 0.415102 | 1.4:-22828713 | None:intergenic |
| CTCCGAGCCTTTCAGCATTG+AGG | 0.415607 | 1.4:-22825757 | None:intergenic |
| CAGCAAATCTTGTCAATTGA+AGG | 0.416739 | 1.4:+22828948 | MS.gene88557:CDS |
| CCCAGAGATTGCAAAATTGT+TGG | 0.417200 | 1.4:-22828668 | None:intergenic |
| TCCGAGCCTTTCAGCATTGA+GGG | 0.420202 | 1.4:-22825756 | None:intergenic |
| TATCTTTGAAGTTGTTTCTA+GGG | 0.420430 | 1.4:-22834072 | None:intergenic |
| TTGTCTTCAAAAGGAGGTTC+AGG | 0.420758 | 1.4:-22817907 | None:intergenic |
| CAGTCTCCTCAGCCGCGAAC+AGG | 0.422579 | 1.4:+22817736 | MS.gene88557:CDS |
| CTGAAGTCTCTGAAAGACTT+AGG | 0.422787 | 1.4:+22819877 | MS.gene88557:CDS |
| TTTCAGTCCTCTTCATGAAA+AGG | 0.425682 | 1.4:+22820319 | MS.gene88557:CDS |
| CAGCTTAATCGAAGAAATAT+CGG | 0.426983 | 1.4:+22819203 | MS.gene88557:CDS |
| GACTTCAGCCATTAGTTTCA+AGG | 0.429451 | 1.4:-22819862 | None:intergenic |
| AAAGTGTTGCTTATTAATGC+TGG | 0.430223 | 1.4:+22818166 | MS.gene88557:CDS |
| AGGCTGATCAGGTTGATATT+CGG | 0.431025 | 1.4:+22819367 | MS.gene88557:intron |
| AGCGAGTTGAGTTCCGATAT+CGG | 0.431457 | 1.4:-22817159 | None:intergenic |
| TCTACTTGAGTTTCAAAAGC+TGG | 0.431914 | 1.4:-22828238 | None:intergenic |
| TGTGAGCTGTAAGGGTTCTC+TGG | 0.437654 | 1.4:+22833949 | MS.gene88557:CDS |
| GCAGAACATTAATGGACTCT+TGG | 0.439785 | 1.4:+22830172 | MS.gene88557:CDS |
| CTCAAATGCTTGTCTTCAAA+AGG | 0.444732 | 1.4:-22817916 | None:intergenic |
| TCTTTGCCTGTTCGCGGCTG+AGG | 0.447594 | 1.4:-22817742 | None:intergenic |
| AAGCAAACTACTGCTACAAC+AGG | 0.447619 | 1.4:+22835996 | MS.gene88557:CDS |
| TTTACTTCTTTGCCTGTTCG+CGG | 0.448620 | 1.4:-22817748 | None:intergenic |
| CGGAGAATTTGGTCAATTGA+AGG | 0.449705 | 1.4:+22828472 | MS.gene88557:CDS |
| GGTCATCAAAGTCAAATAAT+CGG | 0.453439 | 1.4:-22819776 | None:intergenic |
| GCTGAAAGGCTCGGAGAAGC+TGG | 0.453836 | 1.4:+22825764 | MS.gene88557:CDS |
| AAAATATATCTTCAGAGAAA+AGG | 0.454729 | 1.4:+22833792 | MS.gene88557:CDS |
| CAGAACATTAATGGACTCTT+GGG | 0.456754 | 1.4:+22830173 | MS.gene88557:CDS |
| TCCTGTTGACCCTTGCGAGC+AGG | 0.456837 | 1.4:-22833665 | None:intergenic |
| CCAGAGATTGCAAAATTGTT+GGG | 0.457044 | 1.4:-22828667 | None:intergenic |
| TGTGATACAGAAATTTCTCC+TGG | 0.458664 | 1.4:-22833225 | None:intergenic |
| ATCTTCTGATGTTATTGTCT+CGG | 0.459001 | 1.4:-22836961 | None:intergenic |
| ACTCATTATTGGTTTGTTTG+CGG | 0.461013 | 1.4:+22818076 | MS.gene88557:CDS |
| TAGTGATTCTGTGAGCTGTA+AGG | 0.462430 | 1.4:+22833940 | MS.gene88557:CDS |
| CTCGGAGAAGCTGGTTCAAA+TGG | 0.463737 | 1.4:+22825773 | MS.gene88557:CDS |
| AGTTGTCTCAAAATTATTTG+AGG | 0.464264 | 1.4:+22827609 | MS.gene88557:CDS |
| ATTTGCCACATAGACAGCTT+TGG | 0.464896 | 1.4:-22819532 | None:intergenic |
| TCAGGTGTCTGTTAGGAAGA+AGG | 0.466388 | 1.4:+22819979 | MS.gene88557:intron |
| CAAAGCATCAAAACTTTACA+TGG | 0.467743 | 1.4:-22820091 | None:intergenic |
| TGTGGCGGTCTTCTTCAGCA+TGG | 0.469195 | 1.4:+22817823 | MS.gene88557:CDS |
| TCTGCTTCGTGGGGTTCCCT+TGG | 0.472453 | 1.4:-22830154 | None:intergenic |
| ACAGAGACGCCGTGGGCTGC+GGG | 0.477918 | 1.4:+22819106 | MS.gene88557:CDS |
| AAAGCACAAGCAAATCTGAT+AGG | 0.479460 | 1.4:-22832227 | None:intergenic |
| GTTTGTCCAATTGTGAAAGT+TGG | 0.481602 | 1.4:-22821869 | None:intergenic |
| CTCTCGGACCTATGCTCCTA+AGG | 0.482173 | 1.4:+22833521 | MS.gene88557:CDS |
| AAGTACACCAAAACATATGC+AGG | 0.482688 | 1.4:-22832753 | None:intergenic |
| AAAACACCTCTGAAAGAAAC+CGG | 0.483480 | 1.4:+22833909 | MS.gene88557:CDS |
| TATTCGTTATTTCTCTACTT+GGG | 0.484378 | 1.4:-22833754 | None:intergenic |
| TAAAACTCAGAAATTGTTGA+AGG | 0.485738 | 1.4:+22832193 | MS.gene88557:CDS |
| TTGACGATGAAGTCTTTGTT+CGG | 0.485867 | 1.4:-22817194 | None:intergenic |
| TGAAGTCTCTGAAAGACTTA+GGG | 0.486997 | 1.4:+22819878 | MS.gene88557:CDS |
| CCCCTCAATGCTGAAAGGCT+CGG | 0.487251 | 1.4:+22825755 | MS.gene88557:CDS |
| GAAGGCCTCACAGAAGTTGA+TGG | 0.491941 | 1.4:+22819997 | MS.gene88557:CDS |
| TGATTTGGTTTAACTTGTGA+AGG | 0.492234 | 1.4:-22821802 | None:intergenic |
| TTCTTCTGTAAATCTTCTGC+TGG | 0.497573 | 1.4:+22823130 | MS.gene88557:CDS |
| CTGAGAGAAGAAAGCTCACT+AGG | 0.498678 | 1.4:-22835966 | None:intergenic |
| ACTTCATAAACCTGCTCGCA+AGG | 0.499606 | 1.4:+22833655 | MS.gene88557:CDS |
| ACTTTAAATGCATTAAGTCC+AGG | 0.500632 | 1.4:+22833207 | MS.gene88557:CDS |
| ATTGCTCCTTCAACAGAAGA+AGG | 0.501511 | 1.4:-22832720 | None:intergenic |
| GTTTCAAGGGAACAAACATC+AGG | 0.501858 | 1.4:-22819848 | None:intergenic |
| TTCTTCATCTTGCTAAGAAG+TGG | 0.503925 | 1.4:+22831512 | MS.gene88557:CDS |
| GATATTTCTTCGATTAAGCT+GGG | 0.504667 | 1.4:-22819201 | None:intergenic |
| GCGCTGAGGGGTACCATACA+AGG | 0.508416 | 1.4:-22828450 | None:intergenic |
| TCAGTAATGCTGATGGTCAC+CGG | 0.508493 | 1.4:+22832983 | MS.gene88557:CDS |
| TCCCGAGCATCTTTCTGTTG+CGG | 0.509417 | 1.4:+22820262 | MS.gene88557:CDS |
| AGTGATTCTGTGAGCTGTAA+GGG | 0.509715 | 1.4:+22833941 | MS.gene88557:CDS |
| TTCTTTAAGCCCGCAGCCCA+CGG | 0.512103 | 1.4:-22819115 | None:intergenic |
| TTCGTGGGGTTCCCTTGGTA+AGG | 0.513100 | 1.4:-22830149 | None:intergenic |
| CAGAAAACTCACATCATCCT+TGG | 0.517733 | 1.4:-22833298 | None:intergenic |
| GACCAAATTCTCCGCGCTGA+GGG | 0.521742 | 1.4:-22828463 | None:intergenic |
| TCTATTCTTTCAATAGCCAA+TGG | 0.523899 | 1.4:+22828164 | MS.gene88557:CDS |
| TGATAAACTATTTGGCAATA+CGG | 0.526283 | 1.4:+22820457 | MS.gene88557:CDS |
| AGCTGGAACAGAGCATTGTA+TGG | 0.526934 | 1.4:-22828221 | None:intergenic |
| TCCGCAACAGAAAGATGCTC+GGG | 0.527111 | 1.4:-22820263 | None:intergenic |
| GAAATAATTCAGTGACGCAA+AGG | 0.528935 | 1.4:-22817873 | None:intergenic |
| TAATGGTTGGGACATTCCAT+TGG | 0.529375 | 1.4:-22828180 | None:intergenic |
| CAACCGCCTGCATCCTCACT+CGG | 0.532732 | 1.4:-22819797 | None:intergenic |
| CTAACGTTTCTTTCAATCTG+AGG | 0.532966 | 1.4:+22825856 | MS.gene88557:CDS |
| ATGAGTGCAAGAAGCATATG+AGG | 0.537111 | 1.4:-22819177 | None:intergenic |
| GACGATCTGACATCCTTGTA+TGG | 0.537508 | 1.4:+22828437 | MS.gene88557:CDS |
| TCTTCATCTTGCTAAGAAGT+GGG | 0.541111 | 1.4:+22831513 | MS.gene88557:CDS |
| TTCCGCAACAGAAAGATGCT+CGG | 0.542585 | 1.4:-22820264 | None:intergenic |
| ACTTCAGCCATTAGTTTCAA+GGG | 0.543546 | 1.4:-22819861 | None:intergenic |
| GATTATCTTTCCAATGATGA+CGG | 0.544905 | 1.4:+22823095 | MS.gene88557:CDS |
| CGTTAAACATCTCGAGAACA+AGG | 0.548012 | 1.4:-22818205 | None:intergenic |
| AAATAATTCAGTGACGCAAA+GGG | 0.548105 | 1.4:-22817872 | None:intergenic |
| AAGAACCAATTCCATGCTCT+GGG | 0.548415 | 1.4:-22820225 | None:intergenic |
| AAGGTATCAAAATTTGCCGT+GGG | 0.548579 | 1.4:-22833251 | None:intergenic |
| GAAGCTGGTTCAAATGGTGT+TGG | 0.548698 | 1.4:+22825779 | MS.gene88557:CDS |
| CAGTAATGCTGATGGTCACC+GGG | 0.548985 | 1.4:+22832984 | MS.gene88557:CDS |
| TGAAAGCCGGTTTCTTTCAG+AGG | 0.549767 | 1.4:-22833915 | None:intergenic |
| TGATATCAACCAATGCCTGC+AGG | 0.551132 | 1.4:-22832963 | None:intergenic |
| ACATGGCAGCATTAATCAAA+CGG | 0.553782 | 1.4:-22818591 | None:intergenic |
| TGTGTAGGCACGATTTCCAC+TGG | 0.553949 | 1.4:+22835117 | MS.gene88557:intron |
| CCAACCATTATGCAAAATCT+GGG | 0.553970 | 1.4:+22828193 | MS.gene88557:CDS |
| CTCAGATTGAAAGAAACGTT+AGG | 0.557712 | 1.4:-22825855 | None:intergenic |
| TACTGTAAGAAATGTTGTGA+AGG | 0.558571 | 1.4:+22820034 | MS.gene88557:CDS |
| TATTTGCAGTAAGCTCGACT+TGG | 0.560768 | 1.4:+22833709 | MS.gene88557:CDS |
| CTTGGTGCAGCAAGTGTGGA+TGG | 0.561232 | 1.4:+22836924 | MS.gene88557:CDS |
| CAAATATACCTTAGGAGCAT+AGG | 0.561844 | 1.4:-22833529 | None:intergenic |
| TGATGACCGAGTGAGGATGC+AGG | 0.565959 | 1.4:+22819791 | MS.gene88557:CDS |
| TTGCGGAAAGGACAAAGCAC+TGG | 0.567584 | 1.4:+22820279 | MS.gene88557:CDS |
| TCAAGCAATCAGAAAAGTCG+AGG | 0.568814 | 1.4:+22833047 | MS.gene88557:CDS |
| TTGCTATGATAAGGATTGCA+AGG | 0.568868 | 1.4:+22820111 | MS.gene88557:CDS |
| AATTAGTACTTGTGCTCATG+AGG | 0.572015 | 1.4:+22819035 | MS.gene88557:CDS |
| GTCTGAACTGCAAATATCAC+AGG | 0.573815 | 1.4:-22819826 | None:intergenic |
| AGCATCTTTCTGTTGCGGAA+AGG | 0.576447 | 1.4:+22820267 | MS.gene88557:CDS |
| CAGAATCACTAGATGAAAGC+CGG | 0.577612 | 1.4:-22833928 | None:intergenic |
| TGGCGGTCTTCTTCAGCATG+GGG | 0.578280 | 1.4:+22817825 | MS.gene88557:CDS |
| TCGCAGACAAGCCAAATTTG+CGG | 0.579234 | 1.4:+22827552 | MS.gene88557:CDS |
| TGTGTGCAGTGAAAATGATA+AGG | 0.584117 | 1.4:+22831459 | MS.gene88557:intron |
| ATTGAGATTATAGCGATGGC+AGG | 0.584614 | 1.4:+22825831 | MS.gene88557:CDS |
| AGAGCTTGGTGCAGCAAGTG+TGG | 0.585217 | 1.4:+22836920 | MS.gene88557:intron |
| AAATGCTTGTCTTCAAAAGG+AGG | 0.585800 | 1.4:-22817913 | None:intergenic |
| CCGAGCCTTTCAGCATTGAG+GGG | 0.585990 | 1.4:-22825755 | None:intergenic |
| AAAGGTATCAAAATTTGCCG+TGG | 0.588101 | 1.4:-22833252 | None:intergenic |
| GGATGCCTAGCAGCCAAAGA+GGG | 0.591116 | 1.4:+22836017 | MS.gene88557:CDS |
| CAGCATCATTAACAAGCTCC+CGG | 0.592343 | 1.4:-22833002 | None:intergenic |
| GAAATGTTGTGAAGGAAGCA+TGG | 0.592659 | 1.4:+22820042 | MS.gene88557:CDS |
| GAATTTCAGATCCCAGAGCA+TGG | 0.595894 | 1.4:+22820214 | MS.gene88557:intron |
| TATCTTTCCAATGATGACGG+TGG | 0.597073 | 1.4:+22823098 | MS.gene88557:CDS |
| AACTGAATGTTCAGAACTCG+AGG | 0.602101 | 1.4:-22827590 | None:intergenic |
| GCTGATTGAGATTATAGCGA+TGG | 0.603646 | 1.4:+22825827 | MS.gene88557:CDS |
| ACCAAATTCTCCGCGCTGAG+GGG | 0.612031 | 1.4:-22828462 | None:intergenic |
| TATTTATGACAGAGACGCCG+TGG | 0.613388 | 1.4:+22819098 | MS.gene88557:CDS |
| GGTTATCATAATAGAAGACA+TGG | 0.614977 | 1.4:-22818608 | None:intergenic |
| TTGCGATCAAAATGGTGAAG+CGG | 0.617921 | 1.4:-22831561 | None:intergenic |
| AAAGATAATCTAAAACACAC+TGG | 0.621750 | 1.4:-22823082 | None:intergenic |
| CATTAATGTTCTGCTTCGTG+GGG | 0.624545 | 1.4:-22830163 | None:intergenic |
| AGCATTCTCCAATAAACAAG+TGG | 0.626337 | 1.4:-22834011 | None:intergenic |
| AGGATGCCTAGCAGCCAAAG+AGG | 0.626376 | 1.4:+22836016 | MS.gene88557:CDS |
| AGAATGATACGGGAAAATGA+TGG | 0.630687 | 1.4:+22830206 | MS.gene88557:CDS |
| TGACCAAATTCTCCGCGCTG+AGG | 0.633871 | 1.4:-22828464 | None:intergenic |
| AATGCAGAAGCTGCACAAGC+TGG | 0.634189 | 1.4:+22833167 | MS.gene88557:intron |
| CTAGTCAGAAGTTACGCAGA+AGG | 0.636846 | 1.4:-22837208 | None:intergenic |
| CTTCATAAACCTGCTCGCAA+GGG | 0.644216 | 1.4:+22833656 | MS.gene88557:CDS |
| GAAGCCACTGATAGATGCTG+TGG | 0.646591 | 1.4:+22817798 | MS.gene88557:CDS |
| CTCACTCTATACAATGACAA+AGG | 0.649677 | 1.4:-22833270 | None:intergenic |
| ATAGATGCTGTGGTTTGTGG+CGG | 0.653066 | 1.4:+22817808 | MS.gene88557:CDS |
| CATGAAACTTCTGTGCAACA+TGG | 0.656236 | 1.4:-22819437 | None:intergenic |
| TTGACTTTGATGACCGAGTG+AGG | 0.656661 | 1.4:+22819784 | MS.gene88557:CDS |
| AGTACACCAAAACATATGCA+GGG | 0.657650 | 1.4:-22832752 | None:intergenic |
| GCCTGCAGGAGAAAGAAGAG+TGG | 0.659028 | 1.4:-22832949 | None:intergenic |
| GTTGATATCAGTAATGCTGA+TGG | 0.664565 | 1.4:+22832976 | MS.gene88557:CDS |
| AACAACTTCAAAGATACATG+TGG | 0.665571 | 1.4:+22834079 | MS.gene88557:CDS |
| TTTGAGCGAGGTGAGATCCA+TGG | 0.668375 | 1.4:-22817129 | None:intergenic |
| ATGTGCCAAAGCTGTCTATG+TGG | 0.669466 | 1.4:+22819527 | MS.gene88557:CDS |
| TTTCTGTATCACAAGCCCCA+CGG | 0.672759 | 1.4:+22833235 | MS.gene88557:CDS |
| GGTTAAAGTATTGGATACTG+TGG | 0.673367 | 1.4:+22818136 | MS.gene88557:CDS |
| ATTTATGACAGAGACGCCGT+GGG | 0.679070 | 1.4:+22819099 | MS.gene88557:CDS |
| CCAACTGATCCAGAATCAGA+CGG | 0.683014 | 1.4:-22833830 | None:intergenic |
| ATCGGAGATGAGTTTGAGCG+AGG | 0.686621 | 1.4:-22817141 | None:intergenic |
| CTGAGAGCACTGATAATCTG+CGG | 0.688901 | 1.4:+22832264 | MS.gene88557:CDS |
| GCAAGTTGATAAGAAGCACA+AGG | 0.693472 | 1.4:-22819003 | None:intergenic |
| TATTTCCATCAACTTCTGTG+AGG | 0.695527 | 1.4:-22820002 | None:intergenic |
| TTATTTGAAAGATCTGCCAG+TGG | 0.697903 | 1.4:-22835133 | None:intergenic |
| AGGTATCAAAATTTGCCGTG+GGG | 0.699630 | 1.4:-22833250 | None:intergenic |
| CAAACCACAGCATCTATCAG+TGG | 0.707630 | 1.4:-22817802 | None:intergenic |
| CTTAGGAGCATAGGTCCGAG+AGG | 0.719753 | 1.4:-22833520 | None:intergenic |
| GTATAGAGTGAGTCTCACCA+AGG | 0.741431 | 1.4:+22833281 | MS.gene88557:CDS |
| CTGAGATGTATCATGCGATG+AGG | 0.742334 | 1.4:-22828923 | None:intergenic |
| ACTGATCCAGAATCAGACGG+AGG | 0.753799 | 1.4:-22833827 | None:intergenic |
| TTGTATGGTACCCCTCAGCG+CGG | 0.754474 | 1.4:+22828452 | MS.gene88557:CDS |
| TGACCGAGTGAGGATGCAGG+CGG | 0.772188 | 1.4:+22819794 | MS.gene88557:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 22817131 | 22837219 | 22817131 | ID=MS.gene88557 |
| chr1.4 | mRNA | 22817131 | 22837219 | 22817131 | ID=MS.gene88557.t1;Parent=MS.gene88557 |
| chr1.4 | exon | 22817131 | 22817226 | 22817131 | ID=MS.gene88557.t1.exon1;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22817131 | 22817226 | 22817131 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22817706 | 22817939 | 22817706 | ID=MS.gene88557.t1.exon2;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22817706 | 22817939 | 22817706 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22818065 | 22818246 | 22818065 | ID=MS.gene88557.t1.exon3;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22818065 | 22818246 | 22818065 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22818576 | 22818705 | 22818576 | ID=MS.gene88557.t1.exon4;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22818576 | 22818705 | 22818576 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22818997 | 22819224 | 22818997 | ID=MS.gene88557.t1.exon5;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22818997 | 22819224 | 22818997 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22819369 | 22819585 | 22819369 | ID=MS.gene88557.t1.exon6;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22819369 | 22819585 | 22819369 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22819763 | 22819908 | 22819763 | ID=MS.gene88557.t1.exon7;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22819763 | 22819908 | 22819763 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22819983 | 22820140 | 22819983 | ID=MS.gene88557.t1.exon8;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22819983 | 22820140 | 22819983 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22820223 | 22820372 | 22820223 | ID=MS.gene88557.t1.exon9;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22820223 | 22820372 | 22820223 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22820443 | 22820491 | 22820443 | ID=MS.gene88557.t1.exon10;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22820443 | 22820491 | 22820443 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22821710 | 22821898 | 22821710 | ID=MS.gene88557.t1.exon11;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22821710 | 22821898 | 22821710 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22822981 | 22823151 | 22822981 | ID=MS.gene88557.t1.exon12;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22822981 | 22823151 | 22822981 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22825738 | 22825877 | 22825738 | ID=MS.gene88557.t1.exon13;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22825738 | 22825877 | 22825738 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22827510 | 22827630 | 22827510 | ID=MS.gene88557.t1.exon14;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22827510 | 22827630 | 22827510 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22828157 | 22828297 | 22828157 | ID=MS.gene88557.t1.exon15;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22828157 | 22828297 | 22828157 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22828419 | 22828493 | 22828419 | ID=MS.gene88557.t1.exon16;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22828419 | 22828493 | 22828419 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22828659 | 22828772 | 22828659 | ID=MS.gene88557.t1.exon17;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22828659 | 22828772 | 22828659 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22828895 | 22828969 | 22828895 | ID=MS.gene88557.t1.exon18;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22828895 | 22828969 | 22828895 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22830113 | 22830240 | 22830113 | ID=MS.gene88557.t1.exon19;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22830113 | 22830240 | 22830113 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22831468 | 22831585 | 22831468 | ID=MS.gene88557.t1.exon20;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22831468 | 22831585 | 22831468 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22832158 | 22832292 | 22832158 | ID=MS.gene88557.t1.exon21;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22832158 | 22832292 | 22832158 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22832660 | 22832850 | 22832660 | ID=MS.gene88557.t1.exon22;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22832660 | 22832850 | 22832660 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22832948 | 22833095 | 22832948 | ID=MS.gene88557.t1.exon23;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22832948 | 22833095 | 22832948 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22833174 | 22833308 | 22833174 | ID=MS.gene88557.t1.exon24;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22833174 | 22833308 | 22833174 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22833441 | 22833542 | 22833441 | ID=MS.gene88557.t1.exon25;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22833441 | 22833542 | 22833441 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22833644 | 22834108 | 22833644 | ID=MS.gene88557.t1.exon26;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22833644 | 22834108 | 22833644 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22835124 | 22835173 | 22835124 | ID=MS.gene88557.t1.exon27;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22835124 | 22835173 | 22835124 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22835962 | 22836059 | 22835962 | ID=MS.gene88557.t1.exon28;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22835962 | 22836059 | 22835962 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22836922 | 22837004 | 22836922 | ID=MS.gene88557.t1.exon29;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22836922 | 22837004 | 22836922 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| chr1.4 | exon | 22837205 | 22837219 | 22837205 | ID=MS.gene88557.t1.exon30;Parent=MS.gene88557.t1 |
| chr1.4 | CDS | 22837205 | 22837219 | 22837205 | ID=cds.MS.gene88557.t1;Parent=MS.gene88557.t1 |
| Gene Sequence |
| Protein sequence |
