Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88707.t1 | XP_013454118.1 | 99.2 | 358 | 3 | 0 | 1 | 358 | 1 | 358 | 2.30E-197 | 698 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88707.t1 | O65735 | 94.2 | 359 | 20 | 1 | 1 | 358 | 1 | 359 | 3.2e-187 | 655.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88707.t1 | I3SU63 | 99.2 | 358 | 3 | 0 | 1 | 358 | 1 | 358 | 1.7e-197 | 698.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene88707 | 0.823894 | 1.08E-53 | -1.69E-46 |
| MS.gene050426 | MS.gene88707 | 0.818661 | 1.74E-52 | -1.69E-46 |
| MS.gene052011 | MS.gene88707 | 0.817938 | 2.54E-52 | -1.69E-46 |
| MS.gene052159 | MS.gene88707 | -0.810812 | 9.57E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene88707 | -0.807093 | 5.98E-50 | -1.69E-46 |
| MS.gene053176 | MS.gene88707 | -0.838536 | 2.71E-57 | -1.69E-46 |
| MS.gene053873 | MS.gene88707 | -0.801874 | 7.33E-49 | -1.69E-46 |
| MS.gene054102 | MS.gene88707 | -0.807296 | 5.42E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene88707 | -0.821957 | 3.06E-53 | -1.69E-46 |
| MS.gene054548 | MS.gene88707 | -0.846865 | 1.66E-59 | -1.69E-46 |
| MS.gene054918 | MS.gene88707 | -0.803789 | 2.95E-49 | -1.69E-46 |
| MS.gene054920 | MS.gene88707 | -0.820804 | 5.65E-53 | -1.69E-46 |
| MS.gene055369 | MS.gene88707 | -0.807073 | 6.04E-50 | -1.69E-46 |
| MS.gene056514 | MS.gene88707 | -0.839902 | 1.20E-57 | -1.69E-46 |
| MS.gene057605 | MS.gene88707 | 0.828 | 1.15E-54 | -1.69E-46 |
| MS.gene059420 | MS.gene88707 | -0.80334 | 3.65E-49 | -1.69E-46 |
| MS.gene059868 | MS.gene88707 | -0.81408 | 1.85E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88707.t1 | MTR_5g069055 | 99.162 | 358 | 3 | 0 | 1 | 358 | 1 | 358 | 0.0 | 727 |
| MS.gene88707.t1 | MTR_5g069050 | 91.620 | 358 | 15 | 1 | 1 | 358 | 42 | 384 | 0.0 | 656 |
| MS.gene88707.t1 | MTR_1g061050 | 87.430 | 358 | 45 | 0 | 1 | 358 | 1 | 358 | 0.0 | 647 |
| MS.gene88707.t1 | MTR_5g096670 | 78.212 | 358 | 77 | 1 | 1 | 358 | 1 | 357 | 0.0 | 566 |
| MS.gene88707.t1 | MTR_4g057670 | 56.818 | 352 | 147 | 4 | 8 | 358 | 53 | 400 | 2.88e-135 | 391 |
| MS.gene88707.t1 | MTR_4g071860 | 56.818 | 352 | 147 | 4 | 8 | 358 | 53 | 400 | 4.04e-135 | 391 |
| MS.gene88707.t1 | MTR_1g109200 | 54.213 | 356 | 158 | 4 | 4 | 358 | 40 | 391 | 6.53e-133 | 385 |
| MS.gene88707.t1 | MTR_4g071880 | 51.549 | 355 | 149 | 6 | 8 | 358 | 51 | 386 | 1.70e-114 | 338 |
| MS.gene88707.t1 | MTR_7g103920 | 67.708 | 96 | 6 | 1 | 112 | 207 | 11 | 81 | 3.85e-36 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88707.t1 | AT3G52930 | 88.268 | 358 | 42 | 0 | 1 | 358 | 1 | 358 | 0.0 | 652 |
| MS.gene88707.t1 | AT2G36460 | 86.592 | 358 | 48 | 0 | 1 | 358 | 1 | 358 | 0.0 | 640 |
| MS.gene88707.t1 | AT5G03690 | 86.351 | 359 | 48 | 1 | 1 | 358 | 1 | 359 | 0.0 | 618 |
| MS.gene88707.t1 | AT5G03690 | 86.819 | 349 | 45 | 1 | 11 | 358 | 45 | 393 | 0.0 | 603 |
| MS.gene88707.t1 | AT4G26530 | 76.536 | 358 | 84 | 0 | 1 | 358 | 1 | 358 | 0.0 | 564 |
| MS.gene88707.t1 | AT4G26530 | 76.536 | 358 | 84 | 0 | 1 | 358 | 1 | 358 | 0.0 | 564 |
| MS.gene88707.t1 | AT4G26530 | 76.536 | 358 | 84 | 0 | 1 | 358 | 1 | 358 | 0.0 | 564 |
| MS.gene88707.t1 | AT4G26520 | 71.229 | 358 | 103 | 0 | 1 | 358 | 1 | 358 | 0.0 | 518 |
| MS.gene88707.t1 | AT4G26520 | 71.348 | 356 | 102 | 0 | 1 | 356 | 1 | 356 | 0.0 | 514 |
| MS.gene88707.t1 | AT4G26520 | 71.347 | 349 | 100 | 0 | 10 | 358 | 7 | 355 | 0.0 | 506 |
| MS.gene88707.t1 | AT4G26520 | 71.347 | 349 | 100 | 0 | 10 | 358 | 7 | 355 | 0.0 | 506 |
| MS.gene88707.t1 | AT2G36460 | 87.266 | 267 | 34 | 0 | 92 | 358 | 1 | 267 | 1.35e-174 | 486 |
| MS.gene88707.t1 | AT2G36460 | 87.266 | 267 | 34 | 0 | 92 | 358 | 1 | 267 | 1.35e-174 | 486 |
| MS.gene88707.t1 | AT5G03690 | 86.517 | 267 | 35 | 1 | 93 | 358 | 1 | 267 | 3.88e-163 | 457 |
| MS.gene88707.t1 | AT5G03690 | 86.517 | 267 | 35 | 1 | 93 | 358 | 1 | 267 | 3.88e-163 | 457 |
| MS.gene88707.t1 | AT2G21330 | 57.062 | 354 | 147 | 4 | 6 | 358 | 50 | 399 | 4.24e-136 | 393 |
| MS.gene88707.t1 | AT4G38970 | 56.780 | 354 | 148 | 4 | 6 | 358 | 49 | 398 | 4.28e-136 | 393 |
| MS.gene88707.t1 | AT2G01140 | 55.398 | 352 | 152 | 4 | 8 | 358 | 44 | 391 | 4.19e-133 | 385 |
| MS.gene88707.t1 | AT2G21330 | 55.085 | 354 | 144 | 5 | 6 | 358 | 50 | 389 | 3.58e-127 | 370 |
| MS.gene88707.t1 | AT4G38970 | 56.757 | 259 | 110 | 2 | 6 | 263 | 49 | 306 | 8.00e-98 | 295 |
| MS.gene88707.t1 | AT2G21330 | 55.985 | 259 | 112 | 2 | 6 | 263 | 50 | 307 | 5.73e-97 | 290 |
Find 117 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGACCCTTTCCTTCTCTTT+TGG | 0.209134 | 5.4:-54045586 | MS.gene88707:CDS |
| CTTACCCTTGACTTGGTTGA+TGG | 0.263243 | 5.4:+54045615 | None:intergenic |
| TGGTGTGCTTCCTGGTATTA+AGG | 0.315416 | 5.4:-54046166 | MS.gene88707:CDS |
| AACGAAGCTGGTGTGCTTCC+TGG | 0.322802 | 5.4:-54046174 | MS.gene88707:CDS |
| GAGTGCTCAGATGGCTCATT+GGG | 0.370466 | 5.4:+54046003 | None:intergenic |
| ACCACCACTCAGGGTCTTGA+TGG | 0.384125 | 5.4:-54046102 | MS.gene88707:CDS |
| TAGACGCTTTCCAATTGTTC+CGG | 0.385779 | 5.4:+54046970 | None:intergenic |
| ACCTTTGGTGCATCAGATCC+AGG | 0.397934 | 5.4:+54045763 | None:intergenic |
| GCTTCAAGAGAGTGCCTTCA+AGG | 0.401651 | 5.4:+54045800 | None:intergenic |
| GATGAGTCAACCGGAACAAT+TGG | 0.403195 | 5.4:-54046980 | MS.gene88707:CDS |
| GGTGGTTTCTCCATCAGTTC+CGG | 0.405974 | 5.4:+54046119 | None:intergenic |
| GAGCCTGAGATCCTTGTTGA+TGG | 0.408703 | 5.4:-54045907 | MS.gene88707:CDS |
| ACAACCTCGGGTGCAACCTT+TGG | 0.418995 | 5.4:+54045748 | None:intergenic |
| GGTGTCCTTCAGTACCTTAG+TGG | 0.421088 | 5.4:-54046878 | MS.gene88707:CDS |
| AGCAGCAAGAATACCCTTGC+CGG | 0.424830 | 5.4:+54047003 | None:intergenic |
| AAGGGTACCGTTGAGCTTGC+CGG | 0.426023 | 5.4:-54046138 | MS.gene88707:CDS |
| GATCCAGGGGTAACCATGTT+AGG | 0.432972 | 5.4:+54045778 | None:intergenic |
| CTGCAGCGGTGCTTTGGTAG+AGG | 0.433294 | 5.4:+54046834 | None:intergenic |
| GACCACCATGTCCTCCTTGA+AGG | 0.437194 | 5.4:-54045814 | MS.gene88707:CDS |
| AGTACCCTCAAGGCATGGTC+TGG | 0.442363 | 5.4:-54045547 | MS.gene88707:CDS |
| TTGGCATATGACTGCATATC+GGG | 0.442827 | 5.4:+54045954 | None:intergenic |
| TAGTGGAGTCATCCTCTTTG+AGG | 0.444154 | 5.4:-54046861 | MS.gene88707:CDS |
| AGGATCTCAGGCTCAACAAT+TGG | 0.457558 | 5.4:+54045916 | None:intergenic |
| ATGGCTTCTTACCCTTGACT+TGG | 0.461709 | 5.4:+54045608 | None:intergenic |
| GGACACCAGGGGCGGTGAAA+AGG | 0.463623 | 5.4:+54046894 | None:intergenic |
| AGAGTGCTCAGATGGCTCAT+TGG | 0.465315 | 5.4:+54046002 | None:intergenic |
| CCATGAGAATGCCTATGGTT+TGG | 0.465357 | 5.4:-54045977 | MS.gene88707:CDS |
| GCTAATTCTGAGGCTACTCT+TGG | 0.466145 | 5.4:-54045472 | MS.gene88707:CDS |
| CTCAAGAAGCTTTGTTGACA+AGG | 0.466664 | 5.4:-54045501 | MS.gene88707:CDS |
| TGGCGTGCAGTGCTTAAAAT+CGG | 0.467744 | 5.4:-54046027 | MS.gene88707:CDS |
| GAGGACATGGTGGTCATTCA+AGG | 0.470656 | 5.4:+54045822 | None:intergenic |
| CTCTACCAAAGCACCGCTGC+AGG | 0.473908 | 5.4:-54046833 | MS.gene88707:intron |
| CCAGACAAGAAAACAACAGC+TGG | 0.481066 | 5.4:+54045676 | None:intergenic |
| AAGTACCTGCAGCGGTGCTT+TGG | 0.482170 | 5.4:+54046828 | None:intergenic |
| TACAAGGGTAACTCTAAACT+TGG | 0.485439 | 5.4:-54045445 | MS.gene88707:CDS |
| GTGTGCTCAGCAACAACCTC+GGG | 0.487306 | 5.4:+54045736 | None:intergenic |
| AGCTTTGTTGACAAGGGCTA+AGG | 0.490730 | 5.4:-54045494 | MS.gene88707:CDS |
| TGCAGCGGTGCTTTGGTAGA+GGG | 0.495649 | 5.4:+54046835 | None:intergenic |
| TTGGTACAAGTCCATTCTCT+TGG | 0.496399 | 5.4:+54045935 | None:intergenic |
| GTTGATGTCTTGAACGAAGC+TGG | 0.500977 | 5.4:-54046186 | MS.gene88707:CDS |
| ATTGCCAATGCTGCCTACAT+TGG | 0.501816 | 5.4:-54047031 | MS.gene88707:CDS |
| AGCTGGGACTGCAGCAGGTA+CGG | 0.503571 | 5.4:+54045693 | None:intergenic |
| CTTGCTGCTGATGAGTCAAC+CGG | 0.504792 | 5.4:-54046989 | MS.gene88707:CDS |
| CTTGGCATATGACTGCATAT+CGG | 0.504914 | 5.4:+54045953 | None:intergenic |
| GTTGAGCTTGCCGGAACTGA+TGG | 0.507933 | 5.4:-54046129 | MS.gene88707:CDS |
| GGTCCATCAACAAGGATCTC+AGG | 0.508887 | 5.4:+54045904 | None:intergenic |
| GGGCGGTGAAAAGGAGTTCA+CGG | 0.513566 | 5.4:+54046903 | None:intergenic |
| GCAGTCATATGCCAAGAGAA+TGG | 0.513764 | 5.4:-54045946 | MS.gene88707:CDS |
| CCCTTCCAAAAGAGAAGGAA+AGG | 0.518782 | 5.4:+54045581 | None:intergenic |
| ACAACAGCTGGGACTGCAGC+AGG | 0.520425 | 5.4:+54045688 | None:intergenic |
| CTACATTGGCACACCCGGCA+AGG | 0.521637 | 5.4:-54047017 | MS.gene88707:CDS |
| TGTCCTTGCAGCATGCTACA+AGG | 0.521812 | 5.4:-54045845 | MS.gene88707:CDS |
| TGTGCCAATGTAGGCAGCAT+TGG | 0.523397 | 5.4:+54047027 | None:intergenic |
| GCTGCCTACATTGGCACACC+CGG | 0.524564 | 5.4:-54047022 | MS.gene88707:CDS |
| CCCTGGATCTGATGCACCAA+AGG | 0.525088 | 5.4:-54045764 | MS.gene88707:CDS |
| CTAAGGTACTGAAGGACACC+AGG | 0.526807 | 5.4:+54046881 | None:intergenic |
| TCGTTCAAGACATCAACAAA+AGG | 0.529185 | 5.4:+54046192 | None:intergenic |
| TGGTGGACAGAGTGAGGAAG+AGG | 0.529702 | 5.4:-54045656 | MS.gene88707:CDS |
| TCTATCCATGAGAATGCCTA+TGG | 0.529948 | 5.4:-54045982 | MS.gene88707:CDS |
| CTTGCCGGGTGTGCCAATGT+AGG | 0.530596 | 5.4:+54047018 | None:intergenic |
| TGACTTGGTTGATGGCATTG+AGG | 0.532962 | 5.4:+54045623 | None:intergenic |
| GGCTACTCTTGGAACTTACA+AGG | 0.533473 | 5.4:-54045461 | MS.gene88707:CDS |
| GGTAACTCTAAACTTGGTGC+TGG | 0.539715 | 5.4:-54045439 | MS.gene88707:CDS |
| AAGCCTAACATGGTTACCCC+TGG | 0.543234 | 5.4:-54045781 | MS.gene88707:CDS |
| TTCACGGAGAGCACGTCTGT+TGG | 0.544051 | 5.4:+54046919 | None:intergenic |
| CACTCTCTTGAAGCCTAACA+TGG | 0.547031 | 5.4:-54045791 | MS.gene88707:CDS |
| CCAAACCATAGGCATTCTCA+TGG | 0.550708 | 5.4:+54045977 | None:intergenic |
| AAAGAGAAGGAAAGGGTCCA+TGG | 0.554272 | 5.4:+54045589 | None:intergenic |
| AAGTCAAGGGTAAGAAGCCA+TGG | 0.558340 | 5.4:-54045606 | MS.gene88707:CDS |
| TGTGCTAAGTACTATGAAGC+AGG | 0.559793 | 5.4:-54046066 | MS.gene88707:CDS |
| TCCTGGTATTAAGGTTGACA+AGG | 0.560036 | 5.4:-54046157 | MS.gene88707:CDS |
| GCAGCAAGAATACCCTTGCC+GGG | 0.561946 | 5.4:+54047004 | None:intergenic |
| ACTCAGGGTCTTGATGGACT+TGG | 0.562479 | 5.4:-54046096 | MS.gene88707:CDS |
| CTTGTCTGGTGGACAGAGTG+AGG | 0.562758 | 5.4:-54045662 | MS.gene88707:CDS |
| CTCAGAGAGTCTTCATGTGA+AGG | 0.562837 | 5.4:-54045413 | MS.gene88707:CDS |
| TACATTGGCACACCCGGCAA+GGG | 0.569483 | 5.4:-54047016 | MS.gene88707:CDS |
| TGATGGAGAAACCACCACTC+AGG | 0.570496 | 5.4:-54046112 | MS.gene88707:CDS |
| CCCTTGTCAACCTTAATACC+AGG | 0.572245 | 5.4:+54046156 | None:intergenic |
| GATGGCATTGAGGTTGACAC+TGG | 0.575533 | 5.4:+54045633 | None:intergenic |
| GGTAGAGGGTTTCCTCAAAG+AGG | 0.575881 | 5.4:+54046849 | None:intergenic |
| TCATGGATAGAGTGCTCAGA+TGG | 0.581969 | 5.4:+54045994 | None:intergenic |
| CCTTTGGTGCATCAGATCCA+GGG | 0.582593 | 5.4:+54045764 | None:intergenic |
| GATGGAGAAACCACCACTCA+GGG | 0.584183 | 5.4:-54046111 | MS.gene88707:CDS |
| CAATGCCATCAACCAAGTCA+AGG | 0.584504 | 5.4:-54045620 | MS.gene88707:CDS |
| ATCAGTTCCGGCAAGCTCAA+CGG | 0.584893 | 5.4:+54046131 | None:intergenic |
| GAGTGCCTTCAAGGAGGACA+TGG | 0.586352 | 5.4:+54045809 | None:intergenic |
| TGCACCAAAGGTTGCACCCG+AGG | 0.589398 | 5.4:-54045752 | MS.gene88707:CDS |
| CAAAGAGGATGACTCCACTA+AGG | 0.590051 | 5.4:+54046864 | None:intergenic |
| TGACTCCACTAAGGTACTGA+AGG | 0.592512 | 5.4:+54046873 | None:intergenic |
| GCATGCTGCAAGGACACGCT+CGG | 0.593245 | 5.4:+54045852 | None:intergenic |
| TGCATATCGGGCCAAACCAT+AGG | 0.596299 | 5.4:+54045966 | None:intergenic |
| AAGTGCCCTTCCAAAAGAGA+AGG | 0.603752 | 5.4:+54045576 | None:intergenic |
| AACAGAGTACCCTCAAGGCA+TGG | 0.603839 | 5.4:-54045552 | MS.gene88707:CDS |
| AATGCCATCAACCAAGTCAA+GGG | 0.616498 | 5.4:-54045619 | MS.gene88707:CDS |
| CCTTCCAAAAGAGAAGGAAA+GGG | 0.621042 | 5.4:+54045582 | None:intergenic |
| TCCATCAAGACCCTGAGTGG+TGG | 0.624702 | 5.4:+54046101 | None:intergenic |
| AGGCCTTGTAGCATGCTGCA+AGG | 0.628730 | 5.4:+54045842 | None:intergenic |
| TGTCATGAGGTCCATCAACA+AGG | 0.633917 | 5.4:+54045896 | None:intergenic |
| AGTGTGCTCAGCAACAACCT+CGG | 0.636805 | 5.4:+54045735 | None:intergenic |
| TGCCTTCAAGGAGGACATGG+TGG | 0.637134 | 5.4:+54045812 | None:intergenic |
| TCAAGAAGCTTTGTTGACAA+GGG | 0.640371 | 5.4:-54045500 | MS.gene88707:CDS |
| CAGACAAGAAAACAACAGCT+GGG | 0.641298 | 5.4:+54045677 | None:intergenic |
| AAGGGCTAAGGCTAATTCTG+AGG | 0.650952 | 5.4:-54045482 | MS.gene88707:CDS |
| CTTTGGTGCATCAGATCCAG+GGG | 0.655083 | 5.4:+54045765 | None:intergenic |
| AAGTCCATCAAGACCCTGAG+TGG | 0.657276 | 5.4:+54046098 | None:intergenic |
| GCTACTCTTGGAACTTACAA+GGG | 0.661396 | 5.4:-54045460 | MS.gene88707:CDS |
| TGGAAAAGAAGAAAATGTGA+AGG | 0.663229 | 5.4:-54045527 | MS.gene88707:CDS |
| CCTGGTATTAAGGTTGACAA+GGG | 0.671309 | 5.4:-54046156 | MS.gene88707:CDS |
| ACTTCAACAGAGTACCCTCA+AGG | 0.678437 | 5.4:-54045557 | MS.gene88707:CDS |
| AACTTCAAGAGCAAGTACCA+TGG | 0.686368 | 5.4:-54047554 | MS.gene88707:intron |
| TAAGGTACTGAAGGACACCA+GGG | 0.689754 | 5.4:+54046882 | None:intergenic |
| TAGGAAGTAAGTACCTGCAG+CGG | 0.691298 | 5.4:+54046820 | None:intergenic |
| AGTGCTCAGATGGCTCATTG+GGG | 0.704686 | 5.4:+54046004 | None:intergenic |
| CTTCACATGAAGACTCTCTG+AGG | 0.707482 | 5.4:+54045414 | None:intergenic |
| TCAAGAGAGTGCCTTCAAGG+AGG | 0.717476 | 5.4:+54045803 | None:intergenic |
| AAGGTACTGAAGGACACCAG+GGG | 0.750874 | 5.4:+54046883 | None:intergenic |
| GTACTGAAGGACACCAGGGG+CGG | 0.769749 | 5.4:+54046886 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATGAAATTGTAAATCA+GGG | - | chr5.4:54045698-54045717 | MS.gene88707:CDS | 15.0% |
| !! | TATTTATGAAATTGTAAATC+AGG | - | chr5.4:54045697-54045716 | MS.gene88707:CDS | 15.0% |
| !!! | TACATGAATGTATTTTTTTT+AGG | - | chr5.4:54046740-54046759 | MS.gene88707:intron | 15.0% |
| !! | AAATCAAGTAGATCTATTTA+AGG | - | chr5.4:54045727-54045746 | MS.gene88707:CDS | 20.0% |
| !! | ATTTATATCAAAACCCTTTA+AGG | + | chr5.4:54045666-54045685 | None:intergenic | 20.0% |
| !!! | GTCTAATCATGATTAATTTT+GGG | - | chr5.4:54045823-54045842 | MS.gene88707:CDS | 20.0% |
| !!! | TGTCTAATCATGATTAATTT+TGG | - | chr5.4:54045822-54045841 | MS.gene88707:CDS | 20.0% |
| !!! | TTTGTTCTGTTTTATTTGTA+TGG | - | chr5.4:54045531-54045550 | MS.gene88707:CDS | 20.0% |
| ! | AAGAGAATAGAATTATACCA+TGG | + | chr5.4:54045425-54045444 | None:intergenic | 25.0% |
| ! | CATATAAGAAAACGTGTTAA+AGG | + | chr5.4:54046466-54046485 | None:intergenic | 25.0% |
| ! | TGCTTTGTATTGTAAAAGTT+TGG | - | chr5.4:54046322-54046341 | MS.gene88707:intron | 25.0% |
| ! | TTAATTAGATTGTTGCAGTA+AGG | - | chr5.4:54045856-54045875 | MS.gene88707:CDS | 25.0% |
| !! | ATGTATTGATGAACAATTCA+AGG | + | chr5.4:54046221-54046240 | None:intergenic | 25.0% |
| !!! | TCTGTTTTATTTGTATGGAT+CGG | - | chr5.4:54045536-54045555 | MS.gene88707:CDS | 25.0% |
| !!! | TTCTTGATTGTTTCTTTTTG+TGG | - | chr5.4:54046673-54046692 | MS.gene88707:intron | 25.0% |
| AAATAGTGATCCATCATGTT+AGG | - | chr5.4:54046519-54046538 | MS.gene88707:intron | 30.0% | |
| ACAATACAAAGCAATAGACA+TGG | + | chr5.4:54046315-54046334 | None:intergenic | 30.0% | |
| AGATCTATTGTTATCACCTT+CGG | - | chr5.4:54045474-54045493 | MS.gene88707:CDS | 30.0% | |
| AGTAAGGTTTATAGTTGTGT+TGG | - | chr5.4:54045872-54045891 | MS.gene88707:CDS | 30.0% | |
| ATCTATTGCTTTGTGAAGTT+TGG | - | chr5.4:54046419-54046438 | MS.gene88707:intron | 30.0% | |
| CATTACATCAGATCCTTAAA+GGG | - | chr5.4:54045650-54045669 | MS.gene88707:CDS | 30.0% | |
| GATAACAAAAGCAATAGACA+TGG | + | chr5.4:54046284-54046303 | None:intergenic | 30.0% | |
| TATTGTAAAAGTTTGGATCG+TGG | - | chr5.4:54046329-54046348 | MS.gene88707:intron | 30.0% | |
| TCATTACATCAGATCCTTAA+AGG | - | chr5.4:54045649-54045668 | MS.gene88707:CDS | 30.0% | |
| TGGAAAAGAAGAAAATGTGA+AGG | - | chr5.4:54047432-54047451 | MS.gene88707:intron | 30.0% | |
| TTGTTCAGATTGTAAGAACT+AGG | + | chr5.4:54046161-54046180 | None:intergenic | 30.0% | |
| !!! | ACATTTTTTGCATCCCAAAA+AGG | + | chr5.4:54046600-54046619 | None:intergenic | 30.0% |
| !!! | ATTTTTTGCATCCCAAAAAG+GGG | + | chr5.4:54046598-54046617 | None:intergenic | 30.0% |
| !!! | CATTTTTTGCATCCCAAAAA+GGG | + | chr5.4:54046599-54046618 | None:intergenic | 30.0% |
| AAAAATTGAGCAAGATCCGA+AGG | + | chr5.4:54045493-54045512 | None:intergenic | 35.0% | |
| TACAAGGGTAACTCTAAACT+TGG | - | chr5.4:54047514-54047533 | MS.gene88707:intron | 35.0% | |
| TCGTTCAAGACATCAACAAA+AGG | + | chr5.4:54046770-54046789 | None:intergenic | 35.0% | |
| TCTATTGCTTCCTAACATGA+TGG | + | chr5.4:54046532-54046551 | None:intergenic | 35.0% | |
| TTGTATGGATCGGTAATTGT+TGG | - | chr5.4:54045546-54045565 | MS.gene88707:CDS | 35.0% | |
| !! | TCAAGAAGCTTTGTTGACAA+GGG | - | chr5.4:54047459-54047478 | MS.gene88707:intron | 35.0% |
| !!! | TTTTTTGCATCCCAAAAAGG+GGG | + | chr5.4:54046597-54046616 | None:intergenic | 35.0% |
| AACTTCAAGAGCAAGTACCA+TGG | - | chr5.4:54045405-54045424 | MS.gene88707:CDS | 40.0% | |
| AATGCCATCAACCAAGTCAA+GGG | - | chr5.4:54047340-54047359 | MS.gene88707:intron | 40.0% | |
| CAGACAAGAAAACAACAGCT+GGG | + | chr5.4:54047285-54047304 | None:intergenic | 40.0% | |
| CCTGGTATTAAGGTTGACAA+GGG | - | chr5.4:54046803-54046822 | MS.gene88707:intron | 40.0% | |
| CCTTCCAAAAGAGAAGGAAA+GGG | + | chr5.4:54047380-54047399 | None:intergenic | 40.0% | |
| CTTGGCATATGACTGCATAT+CGG | + | chr5.4:54047009-54047028 | None:intergenic | 40.0% | |
| GCTACTCTTGGAACTTACAA+GGG | - | chr5.4:54047499-54047518 | MS.gene88707:intron | 40.0% | |
| TAGACGCTTTCCAATTGTTC+CGG | + | chr5.4:54045992-54046011 | None:intergenic | 40.0% | |
| TCCTGGTATTAAGGTTGACA+AGG | - | chr5.4:54046802-54046821 | MS.gene88707:intron | 40.0% | |
| TCTATCCATGAGAATGCCTA+TGG | - | chr5.4:54046977-54046996 | MS.gene88707:CDS | 40.0% | |
| TGTGCTAAGTACTATGAAGC+AGG | - | chr5.4:54046893-54046912 | MS.gene88707:CDS | 40.0% | |
| TTGGCATATGACTGCATATC+GGG | + | chr5.4:54047008-54047027 | None:intergenic | 40.0% | |
| TTGGTACAAGTCCATTCTCT+TGG | + | chr5.4:54047027-54047046 | None:intergenic | 40.0% | |
| ! | GCACACTTTTGAATGTCATG+AGG | + | chr5.4:54047079-54047098 | None:intergenic | 40.0% |
| ! | TTTTTGCATCCCAAAAAGGG+GGG | + | chr5.4:54046596-54046615 | None:intergenic | 40.0% |
| !! | CCTTTCCTTCTCTTTTGGAA+GGG | - | chr5.4:54047378-54047397 | MS.gene88707:intron | 40.0% |
| !! | CTCAAGAAGCTTTGTTGACA+AGG | - | chr5.4:54047458-54047477 | MS.gene88707:intron | 40.0% |
| AAAGAGAAGGAAAGGGTCCA+TGG | + | chr5.4:54047373-54047392 | None:intergenic | 45.0% | |
| AAGGGCTAAGGCTAATTCTG+AGG | - | chr5.4:54047477-54047496 | MS.gene88707:intron | 45.0% | |
| AAGTCAAGGGTAAGAAGCCA+TGG | - | chr5.4:54047353-54047372 | MS.gene88707:intron | 45.0% | |
| AAGTGCCCTTCCAAAAGAGA+AGG | + | chr5.4:54047386-54047405 | None:intergenic | 45.0% | |
| AGGATCTCAGGCTCAACAAT+TGG | + | chr5.4:54047046-54047065 | None:intergenic | 45.0% | |
| ATGGCTTCTTACCCTTGACT+TGG | + | chr5.4:54047354-54047373 | None:intergenic | 45.0% | |
| ATTGCCAATGCTGCCTACAT+TGG | - | chr5.4:54045928-54045947 | MS.gene88707:CDS | 45.0% | |
| CAAAGAGGATGACTCCACTA+AGG | + | chr5.4:54046098-54046117 | None:intergenic | 45.0% | |
| CAATGCCATCAACCAAGTCA+AGG | - | chr5.4:54047339-54047358 | MS.gene88707:intron | 45.0% | |
| CACTCTCTTGAAGCCTAACA+TGG | - | chr5.4:54047168-54047187 | MS.gene88707:intron | 45.0% | |
| CCAAACCATAGGCATTCTCA+TGG | + | chr5.4:54046985-54047004 | None:intergenic | 45.0% | |
| CCAGACAAGAAAACAACAGC+TGG | + | chr5.4:54047286-54047305 | None:intergenic | 45.0% | |
| CCATGAGAATGCCTATGGTT+TGG | - | chr5.4:54046982-54047001 | MS.gene88707:CDS | 45.0% | |
| CCCTTCCAAAAGAGAAGGAA+AGG | + | chr5.4:54047381-54047400 | None:intergenic | 45.0% | |
| CCCTTGTCAACCTTAATACC+AGG | + | chr5.4:54046806-54046825 | None:intergenic | 45.0% | |
| CTCAGAGAGTCTTCATGTGA+AGG | - | chr5.4:54047546-54047565 | MS.gene88707:intron | 45.0% | |
| CTTCACATGAAGACTCTCTG+AGG | + | chr5.4:54047548-54047567 | None:intergenic | 45.0% | |
| GATGAGTCAACCGGAACAAT+TGG | - | chr5.4:54045979-54045998 | MS.gene88707:CDS | 45.0% | |
| GCAGTCATATGCCAAGAGAA+TGG | - | chr5.4:54047013-54047032 | MS.gene88707:CDS | 45.0% | |
| GGCTACTCTTGGAACTTACA+AGG | - | chr5.4:54047498-54047517 | MS.gene88707:intron | 45.0% | |
| GTTGATGTCTTGAACGAAGC+TGG | - | chr5.4:54046773-54046792 | MS.gene88707:intron | 45.0% | |
| TAGGAAGTAAGTACCTGCAG+CGG | + | chr5.4:54046142-54046161 | None:intergenic | 45.0% | |
| TAGTGGAGTCATCCTCTTTG+AGG | - | chr5.4:54046098-54046117 | MS.gene88707:CDS | 45.0% | |
| TCAAGAACAGCTTCGTAAGC+AGG | + | chr5.4:54046660-54046679 | None:intergenic | 45.0% | |
| TGGCGTGCAGTGCTTAAAAT+CGG | - | chr5.4:54046932-54046951 | MS.gene88707:CDS | 45.0% | |
| TGGTGTGCTTCCTGGTATTA+AGG | - | chr5.4:54046793-54046812 | MS.gene88707:intron | 45.0% | |
| TGTCATGAGGTCCATCAACA+AGG | + | chr5.4:54047066-54047085 | None:intergenic | 45.0% | |
| ! | ACTTCAACAGAGTACCCTCA+AGG | - | chr5.4:54047402-54047421 | MS.gene88707:intron | 45.0% |
| ! | CAGGTGCACGTTTTGCTAAA+TGG | - | chr5.4:54046912-54046931 | MS.gene88707:CDS | 45.0% |
| ! | CCCTTTCCTTCTCTTTTGGA+AGG | - | chr5.4:54047377-54047396 | MS.gene88707:intron | 45.0% |
| ! | TCATGGATAGAGTGCTCAGA+TGG | + | chr5.4:54046968-54046987 | None:intergenic | 45.0% |
| ! | TGCATTTCTCCCCCCTTTTT+GGG | - | chr5.4:54046584-54046603 | MS.gene88707:intron | 45.0% |
| ! | TGGACCCTTTCCTTCTCTTT+TGG | - | chr5.4:54047373-54047392 | MS.gene88707:intron | 45.0% |
| ! | TTGCATTTCTCCCCCCTTTT+TGG | - | chr5.4:54046583-54046602 | MS.gene88707:intron | 45.0% |
| ! | TTTTCCAGACCATGCCTTGA+GGG | + | chr5.4:54047419-54047438 | None:intergenic | 45.0% |
| !! | AGCTTTGTTGACAAGGGCTA+AGG | - | chr5.4:54047465-54047484 | MS.gene88707:intron | 45.0% |
| !! | CTTACCCTTGACTTGGTTGA+TGG | + | chr5.4:54047347-54047366 | None:intergenic | 45.0% |
| !! | GCTAATTCTGAGGCTACTCT+TGG | - | chr5.4:54047487-54047506 | MS.gene88707:intron | 45.0% |
| !! | GGTAACTCTAAACTTGGTGC+TGG | - | chr5.4:54047520-54047539 | MS.gene88707:intron | 45.0% |
| !! | TAAGGTACTGAAGGACACCA+GGG | + | chr5.4:54046080-54046099 | None:intergenic | 45.0% |
| !! | TGACTCCACTAAGGTACTGA+AGG | + | chr5.4:54046089-54046108 | None:intergenic | 45.0% |
| !! | TGACTTGGTTGATGGCATTG+AGG | + | chr5.4:54047339-54047358 | None:intergenic | 45.0% |
| !!! | CCAGCTGTTGTTTTCTTGTC+TGG | - | chr5.4:54047283-54047302 | MS.gene88707:intron | 45.0% |
| !!! | GCTGTTGTTTTCTTGTCTGG+TGG | - | chr5.4:54047286-54047305 | MS.gene88707:intron | 45.0% |
| AAGCCTAACATGGTTACCCC+TGG | - | chr5.4:54047178-54047197 | MS.gene88707:intron | 50.0% | |
| AAGTCCATCAAGACCCTGAG+TGG | + | chr5.4:54046864-54046883 | None:intergenic | 50.0% | |
| AGCAGCAAGAATACCCTTGC+CGG | + | chr5.4:54045959-54045978 | None:intergenic | 50.0% | |
| AGTGCTCAGATGGCTCATTG+GGG | + | chr5.4:54046958-54046977 | None:intergenic | 50.0% | |
| AGTGTGCTCAGCAACAACCT+CGG | + | chr5.4:54047227-54047246 | None:intergenic | 50.0% | |
| ATCAGTTCCGGCAAGCTCAA+CGG | + | chr5.4:54046831-54046850 | None:intergenic | 50.0% | |
| CTTGCTGCTGATGAGTCAAC+CGG | - | chr5.4:54045970-54045989 | MS.gene88707:CDS | 50.0% | |
| GAGCCTGAGATCCTTGTTGA+TGG | - | chr5.4:54047052-54047071 | MS.gene88707:intron | 50.0% | |
| GAGGACATGGTGGTCATTCA+AGG | + | chr5.4:54047140-54047159 | None:intergenic | 50.0% | |
| GAGTGCTCAGATGGCTCATT+GGG | + | chr5.4:54046959-54046978 | None:intergenic | 50.0% | |
| GATCCAGGGGTAACCATGTT+AGG | + | chr5.4:54047184-54047203 | None:intergenic | 50.0% | |
| GATGGAGAAACCACCACTCA+GGG | - | chr5.4:54046848-54046867 | MS.gene88707:CDS | 50.0% | |
| GGTAGAGGGTTTCCTCAAAG+AGG | + | chr5.4:54046113-54046132 | None:intergenic | 50.0% | |
| GGTCCATCAACAAGGATCTC+AGG | + | chr5.4:54047058-54047077 | None:intergenic | 50.0% | |
| GGTGGTTTCTCCATCAGTTC+CGG | + | chr5.4:54046843-54046862 | None:intergenic | 50.0% | |
| GGTGTCCTTCAGTACCTTAG+TGG | - | chr5.4:54046081-54046100 | MS.gene88707:CDS | 50.0% | |
| TGATGGAGAAACCACCACTC+AGG | - | chr5.4:54046847-54046866 | MS.gene88707:CDS | 50.0% | |
| TGCATATCGGGCCAAACCAT+AGG | + | chr5.4:54046996-54047015 | None:intergenic | 50.0% | |
| TGTCCTTGCAGCATGCTACA+AGG | - | chr5.4:54047114-54047133 | MS.gene88707:intron | 50.0% | |
| TGTGCCAATGTAGGCAGCAT+TGG | + | chr5.4:54045935-54045954 | None:intergenic | 50.0% | |
| ! | AACAGAGTACCCTCAAGGCA+TGG | - | chr5.4:54047407-54047426 | MS.gene88707:intron | 50.0% |
| ! | ACCTTTGGTGCATCAGATCC+AGG | + | chr5.4:54047199-54047218 | None:intergenic | 50.0% |
| ! | AGAGTGCTCAGATGGCTCAT+TGG | + | chr5.4:54046960-54046979 | None:intergenic | 50.0% |
| ! | CCTTTGGTGCATCAGATCCA+GGG | + | chr5.4:54047198-54047217 | None:intergenic | 50.0% |
| ! | CTTTGGTGCATCAGATCCAG+GGG | + | chr5.4:54047197-54047216 | None:intergenic | 50.0% |
| ! | CTTTTCCAGACCATGCCTTG+AGG | + | chr5.4:54047420-54047439 | None:intergenic | 50.0% |
| ! | GATGGCATTGAGGTTGACAC+TGG | + | chr5.4:54047329-54047348 | None:intergenic | 50.0% |
| !! | AAGGTACTGAAGGACACCAG+GGG | + | chr5.4:54046079-54046098 | None:intergenic | 50.0% |
| !! | ACTCAGGGTCTTGATGGACT+TGG | - | chr5.4:54046863-54046882 | MS.gene88707:CDS | 50.0% |
| !! | CTAAGGTACTGAAGGACACC+AGG | + | chr5.4:54046081-54046100 | None:intergenic | 50.0% |
| !! | GCTTCAAGAGAGTGCCTTCA+AGG | + | chr5.4:54047162-54047181 | None:intergenic | 50.0% |
| !! | TCAAGAGAGTGCCTTCAAGG+AGG | + | chr5.4:54047159-54047178 | None:intergenic | 50.0% |
| AACGAAGCTGGTGTGCTTCC+TGG | - | chr5.4:54046785-54046804 | MS.gene88707:intron | 55.0% | |
| AAGTACCTGCAGCGGTGCTT+TGG | + | chr5.4:54046134-54046153 | None:intergenic | 55.0% | |
| ACAACCTCGGGTGCAACCTT+TGG | + | chr5.4:54047214-54047233 | None:intergenic | 55.0% | |
| ACCACCACTCAGGGTCTTGA+TGG | - | chr5.4:54046857-54046876 | MS.gene88707:CDS | 55.0% | |
| AGTACCCTCAAGGCATGGTC+TGG | - | chr5.4:54047412-54047431 | MS.gene88707:intron | 55.0% | |
| CCCTGGATCTGATGCACCAA+AGG | - | chr5.4:54047195-54047214 | MS.gene88707:intron | 55.0% | |
| GACCACCATGTCCTCCTTGA+AGG | - | chr5.4:54047145-54047164 | MS.gene88707:intron | 55.0% | |
| GAGTGCCTTCAAGGAGGACA+TGG | + | chr5.4:54047153-54047172 | None:intergenic | 55.0% | |
| GCAGCAAGAATACCCTTGCC+GGG | + | chr5.4:54045958-54045977 | None:intergenic | 55.0% | |
| GGGCGGTGAAAAGGAGTTCA+CGG | + | chr5.4:54046059-54046078 | None:intergenic | 55.0% | |
| GTGTGCTCAGCAACAACCTC+GGG | + | chr5.4:54047226-54047245 | None:intergenic | 55.0% | |
| GTTGAGCTTGCCGGAACTGA+TGG | - | chr5.4:54046830-54046849 | MS.gene88707:intron | 55.0% | |
| TACATTGGCACACCCGGCAA+GGG | - | chr5.4:54045943-54045962 | MS.gene88707:CDS | 55.0% | |
| TCCATCAAGACCCTGAGTGG+TGG | + | chr5.4:54046861-54046880 | None:intergenic | 55.0% | |
| TGCAGCGGTGCTTTGGTAGA+GGG | + | chr5.4:54046127-54046146 | None:intergenic | 55.0% | |
| TGCCTTCAAGGAGGACATGG+TGG | + | chr5.4:54047150-54047169 | None:intergenic | 55.0% | |
| ! | AGGCCTTGTAGCATGCTGCA+AGG | + | chr5.4:54047120-54047139 | None:intergenic | 55.0% |
| ! | CTTGTCTGGTGGACAGAGTG+AGG | - | chr5.4:54047297-54047316 | MS.gene88707:intron | 55.0% |
| ! | TGGTGGACAGAGTGAGGAAG+AGG | - | chr5.4:54047303-54047322 | MS.gene88707:intron | 55.0% |
| ! | TTCACGGAGAGCACGTCTGT+TGG | + | chr5.4:54046043-54046062 | None:intergenic | 55.0% |
| !! | AAGGGTACCGTTGAGCTTGC+CGG | - | chr5.4:54046821-54046840 | MS.gene88707:intron | 55.0% |
| ACAACAGCTGGGACTGCAGC+AGG | + | chr5.4:54047274-54047293 | None:intergenic | 60.0% | |
| AGCTGGGACTGCAGCAGGTA+CGG | + | chr5.4:54047269-54047288 | None:intergenic | 60.0% | |
| CTACATTGGCACACCCGGCA+AGG | - | chr5.4:54045942-54045961 | MS.gene88707:CDS | 60.0% | |
| CTGCAGCGGTGCTTTGGTAG+AGG | + | chr5.4:54046128-54046147 | None:intergenic | 60.0% | |
| CTTGCCGGGTGTGCCAATGT+AGG | + | chr5.4:54045944-54045963 | None:intergenic | 60.0% | |
| GCATGCTGCAAGGACACGCT+CGG | + | chr5.4:54047110-54047129 | None:intergenic | 60.0% | |
| GCTGCCTACATTGGCACACC+CGG | - | chr5.4:54045937-54045956 | MS.gene88707:CDS | 60.0% | |
| GTACTGAAGGACACCAGGGG+CGG | + | chr5.4:54046076-54046095 | None:intergenic | 60.0% | |
| TGCACCAAAGGTTGCACCCG+AGG | - | chr5.4:54047207-54047226 | MS.gene88707:intron | 60.0% | |
| ! | GAACTCCTTTTCACCGCCCC+TGG | - | chr5.4:54046060-54046079 | MS.gene88707:CDS | 60.0% |
| !! | CTCTACCAAAGCACCGCTGC+AGG | - | chr5.4:54046126-54046145 | MS.gene88707:CDS | 60.0% |
| GGACACCAGGGGCGGTGAAA+AGG | + | chr5.4:54046068-54046087 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 54045399 | 54047582 | 54045399 | ID=MS.gene88707 |
| chr5.4 | mRNA | 54045399 | 54047582 | 54045399 | ID=MS.gene88707.t1;Parent=MS.gene88707 |
| chr5.4 | exon | 54047555 | 54047582 | 54047555 | ID=MS.gene88707.t1.exon1;Parent=MS.gene88707.t1 |
| chr5.4 | CDS | 54047555 | 54047582 | 54047555 | ID=cds.MS.gene88707.t1;Parent=MS.gene88707.t1 |
| chr5.4 | exon | 54046834 | 54047061 | 54046834 | ID=MS.gene88707.t1.exon2;Parent=MS.gene88707.t1 |
| chr5.4 | CDS | 54046834 | 54047061 | 54046834 | ID=cds.MS.gene88707.t1;Parent=MS.gene88707.t1 |
| chr5.4 | exon | 54045399 | 54046219 | 54045399 | ID=MS.gene88707.t1.exon3;Parent=MS.gene88707.t1 |
| chr5.4 | CDS | 54045399 | 54046219 | 54045399 | ID=cds.MS.gene88707.t1;Parent=MS.gene88707.t1 |
| Gene Sequence |
| Protein sequence |
