Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88797.t1 | XP_003615646.1 | 85 | 113 | 17 | 0 | 77 | 189 | 5 | 117 | 9.30E-43 | 184.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88797.t1 | Q9FMG4 | 70.2 | 114 | 34 | 0 | 77 | 190 | 5 | 118 | 1.3e-37 | 158.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88797.t1 | B7FJQ5 | 85.0 | 113 | 17 | 0 | 77 | 189 | 5 | 117 | 6.7e-43 | 184.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011973 | MS.gene88797 | PPI |
| MS.gene74239 | MS.gene88797 | PPI |
| MS.gene061705 | MS.gene88797 | PPI |
| MS.gene047872 | MS.gene88797 | PPI |
| MS.gene061098 | MS.gene88797 | PPI |
| MS.gene046159 | MS.gene88797 | PPI |
| MS.gene88797 | MS.gene90116 | PPI |
| MS.gene026372 | MS.gene88797 | PPI |
| MS.gene040807 | MS.gene88797 | PPI |
| MS.gene88797 | MS.gene90884 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88797.t1 | MTR_5g070450 | 90.909 | 264 | 21 | 2 | 77 | 339 | 5 | 266 | 4.65e-153 | 432 |
| MS.gene88797.t1 | MTR_4g094235 | 83.465 | 254 | 28 | 3 | 99 | 339 | 27 | 279 | 1.18e-77 | 241 |
| MS.gene88797.t1 | MTR_4g094235 | 82.745 | 255 | 29 | 4 | 99 | 339 | 27 | 280 | 6.72e-76 | 236 |
| MS.gene88797.t1 | MTR_4g118630 | 42.188 | 64 | 37 | 0 | 102 | 165 | 62 | 125 | 8.71e-12 | 65.9 |
| MS.gene88797.t1 | MTR_1g054675 | 40.278 | 72 | 43 | 0 | 94 | 165 | 49 | 120 | 3.94e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88797.t1 | AT5G64200 | 72.115 | 104 | 29 | 0 | 77 | 180 | 5 | 108 | 2.68e-45 | 158 |
| MS.gene88797.t1 | AT5G64200 | 72.115 | 104 | 29 | 0 | 77 | 180 | 5 | 108 | 2.68e-45 | 158 |
| MS.gene88797.t1 | AT5G18810 | 43.750 | 64 | 36 | 0 | 102 | 165 | 61 | 124 | 5.56e-14 | 71.2 |
| MS.gene88797.t1 | AT5G18810 | 43.750 | 64 | 36 | 0 | 102 | 165 | 61 | 124 | 5.64e-14 | 71.2 |
| MS.gene88797.t1 | AT3G13570 | 42.188 | 64 | 37 | 0 | 102 | 165 | 51 | 114 | 8.02e-12 | 65.5 |
| MS.gene88797.t1 | AT1G55310 | 43.750 | 64 | 36 | 0 | 102 | 165 | 50 | 113 | 2.31e-11 | 64.3 |
Find 99 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGAGAAATATTCTTCTT+AGG | 0.233254 | 5.4:+55408234 | None:intergenic |
| ACTTACATTCTCTCAGCATT+AGG | 0.269328 | 5.4:+55409861 | None:intergenic |
| TTGAATTTCGAGAAGGGCTT+CGG | 0.280382 | 5.4:+55408097 | None:intergenic |
| GGTGTCGTCGAGTTCGTTAT+TGG | 0.281830 | 5.4:+55411473 | None:intergenic |
| GGACTAGGACTGCGTCTTGC+AGG | 0.299792 | 5.4:+55408273 | None:intergenic |
| TGATTAAGATCTTGGAGTTC+TGG | 0.320700 | 5.4:+55411251 | None:intergenic |
| TCCTTGAGCTCTTTGATCTC+GGG | 0.321129 | 5.4:+55409312 | None:intergenic |
| CTCCTTGAGCTCTTTGATCT+CGG | 0.321782 | 5.4:+55409311 | None:intergenic |
| AATTGTTGTGCTTCCATTGT+CGG | 0.338591 | 5.4:+55411279 | None:intergenic |
| CCATCACGGCTACGAGTATC+AGG | 0.343759 | 5.4:+55408171 | None:intergenic |
| GTTGCAAGAGCGCTGATATT+AGG | 0.348722 | 5.4:-55407448 | MS.gene88797:CDS |
| CTTACATTCTCTCAGCATTA+GGG | 0.364680 | 5.4:+55409862 | None:intergenic |
| ATTACAGAGACAAGGGTTAC+AGG | 0.369191 | 5.4:-55408574 | MS.gene88797:CDS |
| TTGATGATTGTTCGTGAGTT+TGG | 0.370823 | 5.4:-55407476 | MS.gene88797:CDS |
| CTTCCACGGCGCTTGTAATC+AGG | 0.371793 | 5.4:+55408449 | None:intergenic |
| ACTGTCCAGTTTGCAAAGTA+TGG | 0.388403 | 5.4:-55409885 | MS.gene88797:CDS |
| GAAGGGCTTCGGGAAGCTTC+AGG | 0.403495 | 5.4:+55408108 | None:intergenic |
| GACGCAGTCCTAGTCCAAAA+AGG | 0.412220 | 5.4:-55408266 | MS.gene88797:CDS |
| TGAATTTCGAGAAGGGCTTC+GGG | 0.418855 | 5.4:+55408098 | None:intergenic |
| TAGGGCCATACTTTGCAAAC+TGG | 0.425856 | 5.4:+55409880 | None:intergenic |
| TTTCCTCTGTTCGATAAATA+CGG | 0.428215 | 5.4:-55410494 | MS.gene88797:CDS |
| GGTACCGTGGTGGGAGAGAC+AGG | 0.431627 | 5.4:-55408508 | MS.gene88797:CDS |
| TATCACTTTGCTGGTTAGAA+AGG | 0.442822 | 5.4:-55407414 | MS.gene88797:CDS |
| TGGTACGCACCTTCTCCTGC+TGG | 0.455854 | 5.4:+55409280 | None:intergenic |
| ATGATAGGTATGAACGTGAT+AGG | 0.468757 | 5.4:-55408529 | MS.gene88797:CDS |
| AAGCTTCAAAGGCTGTTGAT+AGG | 0.469348 | 5.4:-55410298 | MS.gene88797:CDS |
| GAAATATTCTTCTTAGGAGA+AGG | 0.470520 | 5.4:+55408240 | None:intergenic |
| GACTAGGACTGCGTCTTGCA+GGG | 0.471757 | 5.4:+55408274 | None:intergenic |
| GCCTTGACTTTGATCAGTTG+TGG | 0.472140 | 5.4:+55411452 | None:intergenic |
| CAAGGAGCCGCAGTCCCAGC+AGG | 0.474371 | 5.4:-55409295 | MS.gene88797:CDS |
| GGACTTTCGCGACGTGGACT+AGG | 0.475885 | 5.4:+55408192 | None:intergenic |
| GAACAGTACCTTCGATCTCT+AGG | 0.481228 | 5.4:+55410449 | None:intergenic |
| TGGCACTACGGCTTCTGCTT+CGG | 0.482247 | 5.4:+55408474 | None:intergenic |
| GGAGAGACACTGCGAGAAGT+AGG | 0.483410 | 5.4:+55408141 | None:intergenic |
| AATGTTGACATTGTTGCCGT+TGG | 0.492793 | 5.4:-55407515 | MS.gene88797:CDS |
| AGGAGAGGCGATGAAGATAG+AGG | 0.495493 | 5.4:-55411172 | MS.gene88797:CDS |
| GATTACAAGCGCCGTGGAAG+GGG | 0.498061 | 5.4:-55408446 | MS.gene88797:CDS |
| GCCGCAGTCCCAGCAGGAGA+AGG | 0.501798 | 5.4:-55409289 | MS.gene88797:intron |
| AGCGAATCCCCTCGATTCAC+CGG | 0.502538 | 5.4:+55410346 | None:intergenic |
| AAGATAGAGGCGGTTTGAAA+CGG | 0.510602 | 5.4:-55411159 | MS.gene88797:CDS |
| CATTCTATCATCGACGAAGC+AGG | 0.511750 | 5.4:-55411419 | MS.gene88797:intron |
| CACCGTTTGAATTTCGAGAA+GGG | 0.512918 | 5.4:+55408091 | None:intergenic |
| CGAAAAGAAACACCGAGAAA+AGG | 0.513116 | 5.4:-55411228 | MS.gene88797:CDS |
| CGGTTTGAAACGGAAAGACT+TGG | 0.515011 | 5.4:-55411149 | MS.gene88797:CDS |
| GTATGCTGATGAAGCTTCAA+AGG | 0.517597 | 5.4:-55410309 | MS.gene88797:CDS |
| CTGCTTCGTCGATGATAGAA+TGG | 0.517674 | 5.4:+55411420 | None:intergenic |
| CAATTTACAGTCACAAAGGA+AGG | 0.518587 | 5.4:-55409349 | MS.gene88797:intron |
| GACTTGGATAACACGGGAGG+CGG | 0.523018 | 5.4:-55411133 | MS.gene88797:intron |
| ACCTTCTCCTGCTGGGACTG+CGG | 0.529187 | 5.4:+55409288 | None:intergenic |
| TGATTACAAGCGCCGTGGAA+GGG | 0.531730 | 5.4:-55408447 | MS.gene88797:CDS |
| GCAGAAGCAGATCAGTAGAC+AGG | 0.539455 | 5.4:-55408394 | MS.gene88797:intron |
| GTCGCAGTAGAAGTTATGAT+AGG | 0.540753 | 5.4:-55408544 | MS.gene88797:CDS |
| CTGATTACAAGCGCCGTGGA+AGG | 0.542451 | 5.4:-55408448 | MS.gene88797:CDS |
| TACGGCTTCTGCTTCGGCGA+CGG | 0.545978 | 5.4:+55408480 | None:intergenic |
| AACGGAAGATTGACCGACAA+TGG | 0.548012 | 5.4:-55411292 | MS.gene88797:intron |
| CCTTGAGCTCTTTGATCTCG+GGG | 0.548590 | 5.4:+55409313 | None:intergenic |
| TTTAAGGACCGGTGAATCGA+GGG | 0.550199 | 5.4:-55410354 | MS.gene88797:intron |
| GACTGCGTCTTGCAGGGGAG+CGG | 0.555372 | 5.4:+55408280 | None:intergenic |
| AACAGTACCTTCGATCTCTA+GGG | 0.559185 | 5.4:+55410450 | None:intergenic |
| GGTACGCACCTTCTCCTGCT+GGG | 0.564144 | 5.4:+55409281 | None:intergenic |
| AAATATTCTTCTTAGGAGAA+GGG | 0.567831 | 5.4:+55408241 | None:intergenic |
| AGCCCTTCTCGAAATTCAAA+CGG | 0.569324 | 5.4:-55408093 | MS.gene88797:CDS |
| CCTGATACTCGTAGCCGTGA+TGG | 0.581591 | 5.4:-55408171 | MS.gene88797:CDS |
| TCACCGTTTGAATTTCGAGA+AGG | 0.584058 | 5.4:+55408090 | None:intergenic |
| ATTGTTCGTGAGTTTGGTGA+CGG | 0.584815 | 5.4:-55407470 | MS.gene88797:CDS |
| ACGGCGCTTGTAATCAGGAC+TGG | 0.588977 | 5.4:+55408454 | None:intergenic |
| ATACTCGTAGCCGTGATGGA+AGG | 0.596314 | 5.4:-55408167 | MS.gene88797:CDS |
| TGACACAGACACAGCACCAA+CGG | 0.598032 | 5.4:+55407499 | None:intergenic |
| CGTGGACTAGGACTAGGACT+AGG | 0.600043 | 5.4:+55408204 | None:intergenic |
| CCCCGAGATCAAAGAGCTCA+AGG | 0.604164 | 5.4:-55409313 | MS.gene88797:CDS |
| TGTAATCAGGACTGGCACTA+CGG | 0.607394 | 5.4:+55408462 | None:intergenic |
| ATTACAAGCGCCGTGGAAGG+GGG | 0.608333 | 5.4:-55408445 | MS.gene88797:CDS |
| TCGCGACGTGGACTAGGACT+AGG | 0.608530 | 5.4:+55408198 | None:intergenic |
| ACGGAAAGACTTGGATAACA+CGG | 0.616926 | 5.4:-55411140 | MS.gene88797:CDS |
| TTGCCGTATTTATCGAACAG+AGG | 0.621319 | 5.4:+55410491 | None:intergenic |
| AGTCACGAATACAAAACTAC+CGG | 0.621954 | 5.4:-55411501 | MS.gene88797:CDS |
| GAAGCTTCAGGACGGCCTCG+TGG | 0.624790 | 5.4:+55408120 | None:intergenic |
| AAGGCTGTTGATAGGCTCGA+TGG | 0.630279 | 5.4:-55410290 | MS.gene88797:intron |
| ACTAGGACTGCGTCTTGCAG+GGG | 0.636173 | 5.4:+55408275 | None:intergenic |
| TCTTCAATTTACAGTCACAA+AGG | 0.639878 | 5.4:-55409353 | MS.gene88797:intron |
| TTAAGGACCGGTGAATCGAG+GGG | 0.645862 | 5.4:-55410353 | MS.gene88797:intron |
| AAGTAGGAGACCTTCCATCA+CGG | 0.646078 | 5.4:+55408157 | None:intergenic |
| TCACGATGATTACAGAGACA+AGG | 0.647756 | 5.4:-55408582 | MS.gene88797:CDS |
| GTATCAGGACTTTCGCGACG+TGG | 0.650471 | 5.4:+55408186 | None:intergenic |
| CGGAAAGACTTGGATAACAC+GGG | 0.654571 | 5.4:-55411139 | MS.gene88797:CDS |
| ACCACAACTGATCAAAGTCA+AGG | 0.655823 | 5.4:-55411453 | MS.gene88797:CDS |
| AACGTGATAGGTACCGTGGT+GGG | 0.657450 | 5.4:-55408517 | MS.gene88797:CDS |
| ACAGAGACAAGGGTTACAGG+AGG | 0.661184 | 5.4:-55408571 | MS.gene88797:CDS |
| CACGATGATTACAGAGACAA+GGG | 0.663891 | 5.4:-55408581 | MS.gene88797:CDS |
| GGCTTCGGGAAGCTTCAGGA+CGG | 0.665731 | 5.4:+55408112 | None:intergenic |
| AGTCCCTGTCTCTCCCACCA+CGG | 0.675783 | 5.4:+55408504 | None:intergenic |
| GTACCGTGGTGGGAGAGACA+GGG | 0.676128 | 5.4:-55408507 | MS.gene88797:CDS |
| AGAGGCGATGAAGATAGAGG+CGG | 0.681390 | 5.4:-55411169 | MS.gene88797:CDS |
| AGTCCTGATTACAAGCGCCG+TGG | 0.683842 | 5.4:-55408452 | MS.gene88797:CDS |
| CAGAGGAAATAGATCATCAG+CGG | 0.687879 | 5.4:+55410508 | None:intergenic |
| GAACGTGATAGGTACCGTGG+TGG | 0.702747 | 5.4:-55408518 | MS.gene88797:CDS |
| AAAGACTTGGATAACACGGG+AGG | 0.708961 | 5.4:-55411136 | MS.gene88797:CDS |
| TCTCGCAGTGTCTCTCCACG+AGG | 0.716772 | 5.4:-55408135 | MS.gene88797:CDS |
| TATGAACGTGATAGGTACCG+TGG | 0.720809 | 5.4:-55408521 | MS.gene88797:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTTTTATATTTAT+CGG | + | chr5.4:55407920-55407939 | None:intergenic | 0.0% |
| !! | AGATTAATTGATAAATAAAA+AGG | + | chr5.4:55408513-55408532 | None:intergenic | 10.0% |
| !! | ATTTATAATTAACAACTTAT+TGG | - | chr5.4:55411335-55411354 | MS.gene88797:intron | 10.0% |
| !! | GATTAATTGATAAATAAAAA+GGG | + | chr5.4:55408512-55408531 | None:intergenic | 10.0% |
| !! | TTTATAATTAACAACTTATT+GGG | - | chr5.4:55411336-55411355 | MS.gene88797:intron | 10.0% |
| !!! | AAATATATTTTCATTGAAAA+GGG | + | chr5.4:55407893-55407912 | None:intergenic | 10.0% |
| !!! | ATTTCAATTTTTATTGTATA+TGG | - | chr5.4:55408961-55408980 | MS.gene88797:intron | 10.0% |
| !!! | TAAATATATTTTCATTGAAA+AGG | + | chr5.4:55407894-55407913 | None:intergenic | 10.0% |
| !!! | TTTGAAATAATTATTTTTTC+AGG | - | chr5.4:55408986-55409005 | MS.gene88797:intron | 10.0% |
| !! | ACAATAAAAATTGAAATGAA+AGG | + | chr5.4:55408958-55408977 | None:intergenic | 15.0% |
| !! | GATATGAAATTCTATTAATT+TGG | - | chr5.4:55408773-55408792 | MS.gene88797:intron | 15.0% |
| !!! | AGACAAATTTTAAAAAACAT+GGG | - | chr5.4:55407974-55407993 | MS.gene88797:intron | 15.0% |
| !!! | GAATTTTTCTATTGTTTTTA+AGG | - | chr5.4:55408549-55408568 | MS.gene88797:CDS | 15.0% |
| !!! | TAATTCTATTTACATTTTTC+AGG | - | chr5.4:55410941-55410960 | MS.gene88797:intron | 15.0% |
| !!! | TTTTTTAGTTTCTGTTATAA+TGG | - | chr5.4:55409092-55409111 | MS.gene88797:intron | 15.0% |
| !! | ACCATCATAATTATTCTTAT+TGG | - | chr5.4:55410590-55410609 | MS.gene88797:intron | 20.0% |
| !! | ATATTTAATATTCAAACCCA+AGG | + | chr5.4:55411119-55411138 | None:intergenic | 20.0% |
| !! | ATGTATGTAATGTTATTCTT+TGG | - | chr5.4:55410851-55410870 | MS.gene88797:intron | 20.0% |
| !! | ATTTCGGCTATTAAATTAAA+TGG | + | chr5.4:55409886-55409905 | None:intergenic | 20.0% |
| !! | TAGTCTCATAAATATTATGT+CGG | - | chr5.4:55408900-55408919 | MS.gene88797:intron | 20.0% |
| !! | TCATAATAATAAGTGCAATA+AGG | + | chr5.4:55408710-55408729 | None:intergenic | 20.0% |
| !! | TCCAATAAGAATAATTATGA+TGG | + | chr5.4:55410594-55410613 | None:intergenic | 20.0% |
| !! | TTATCTGTTATTGTAATTGA+CGG | - | chr5.4:55410142-55410161 | MS.gene88797:intron | 20.0% |
| !!! | AATTATTTTTTCAGGAAGAA+TGG | - | chr5.4:55408994-55409013 | MS.gene88797:intron | 20.0% |
| !!! | ATACTGTTGTTTATATATCT+TGG | - | chr5.4:55409157-55409176 | MS.gene88797:intron | 20.0% |
| !!! | CAGACAAATTTTAAAAAACA+TGG | - | chr5.4:55407973-55407992 | MS.gene88797:intron | 20.0% |
| !!! | CTTCTTCATTTTGTTATTAT+TGG | - | chr5.4:55408656-55408675 | MS.gene88797:intron | 20.0% |
| !!! | TACTGTTGTTTATATATCTT+GGG | - | chr5.4:55409158-55409177 | MS.gene88797:intron | 20.0% |
| !!! | TTCATTTTGAAGTTTTCTTA+TGG | - | chr5.4:55410217-55410236 | MS.gene88797:intron | 20.0% |
| ! | AAACTTCAAAATGAACACAT+AGG | + | chr5.4:55410212-55410231 | None:intergenic | 25.0% |
| ! | AAATATTCTTCTTAGGAGAA+GGG | + | chr5.4:55410681-55410700 | None:intergenic | 25.0% |
| ! | AACTGTAAACAACTGTATTT+CGG | + | chr5.4:55409902-55409921 | None:intergenic | 25.0% |
| ! | AATAATGTCACAAATGCTTA+TGG | - | chr5.4:55409376-55409395 | MS.gene88797:intron | 25.0% |
| ! | TAATATTTATGAGACTATCC+AGG | + | chr5.4:55408897-55408916 | None:intergenic | 25.0% |
| ! | TGCCAATAGTAAATTTCTAA+AGG | + | chr5.4:55407867-55407886 | None:intergenic | 25.0% |
| ! | TTAACATGCTTAAACTGAAA+AGG | + | chr5.4:55409991-55410010 | None:intergenic | 25.0% |
| ! | TTAGCATTCAAAATATCTAC+TGG | - | chr5.4:55410168-55410187 | MS.gene88797:intron | 25.0% |
| ! | TTAGGAGAAATATTCTTCTT+AGG | + | chr5.4:55410688-55410707 | None:intergenic | 25.0% |
| ! | TTATAGAAATAAGCAGCTTA+TGG | - | chr5.4:55409325-55409344 | MS.gene88797:CDS | 25.0% |
| ! | TTGAATAAGGCAATACAAAT+AGG | - | chr5.4:55408932-55408951 | MS.gene88797:intron | 25.0% |
| !! | AAGCATTTGTGACATTATTT+TGG | + | chr5.4:55409375-55409394 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr5.4:55409223-55409242 | None:intergenic | 25.0% |
| !! | GACCTTTAGAAATTTACTAT+TGG | - | chr5.4:55407862-55407881 | MS.gene88797:intron | 25.0% |
| !! | TATATTTTCATTGAAAAGGG+TGG | + | chr5.4:55407890-55407909 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | + | chr5.4:55409222-55409241 | None:intergenic | 25.0% |
| !!! | AAGTCATTTTCGATATCAAA+AGG | - | chr5.4:55410892-55410911 | MS.gene88797:intron | 25.0% |
| !!! | CATTTTAATTTTGCACCTTA+AGG | - | chr5.4:55409951-55409970 | MS.gene88797:intron | 25.0% |
| !!! | TAGGTTAATATTTTAGCATG+AGG | - | chr5.4:55411196-55411215 | MS.gene88797:CDS | 25.0% |
| !!! | TTGGGTTTTATAGTTATGAT+CGG | - | chr5.4:55411354-55411373 | MS.gene88797:intron | 25.0% |
| !!! | TTTCTATTGTTTTTAAGGAC+CGG | - | chr5.4:55408554-55408573 | MS.gene88797:CDS | 25.0% |
| !!! | TTTGTTTTTATACTACAAGC+AGG | - | chr5.4:55409764-55409783 | MS.gene88797:intron | 25.0% |
| AAATGGAAATGCAGAAAAAG+AGG | + | chr5.4:55411269-55411288 | None:intergenic | 30.0% | |
| AACAAAAAGCAATGCCAAAA+TGG | + | chr5.4:55409750-55409769 | None:intergenic | 30.0% | |
| AAGCTATTGTGTTCAAACAT+AGG | + | chr5.4:55409438-55409457 | None:intergenic | 30.0% | |
| AATATTATCAACACAGCAAC+AGG | + | chr5.4:55411015-55411034 | None:intergenic | 30.0% | |
| AATGGAAATGCAGAAAAAGA+GGG | + | chr5.4:55411268-55411287 | None:intergenic | 30.0% | |
| AGCTATTGTGTTCAAACATA+GGG | + | chr5.4:55409437-55409456 | None:intergenic | 30.0% | |
| ATATTAACCTAGCAACTACA+AGG | + | chr5.4:55411187-55411206 | None:intergenic | 30.0% | |
| ATCAAATTCAATCAACAACG+TGG | + | chr5.4:55410278-55410297 | None:intergenic | 30.0% | |
| ATTCAATTGCATACTCATAG+TGG | - | chr5.4:55409469-55409488 | MS.gene88797:intron | 30.0% | |
| GAAATATTCTTCTTAGGAGA+AGG | + | chr5.4:55410682-55410701 | None:intergenic | 30.0% | |
| GTAGAAAGTCAAAACTGAAA+AGG | + | chr5.4:55410572-55410591 | None:intergenic | 30.0% | |
| TAATCTATTCAACAAGGTCA+AGG | + | chr5.4:55409196-55409215 | None:intergenic | 30.0% | |
| TATCACATTCAACTTATCAC+AGG | + | chr5.4:55409814-55409833 | None:intergenic | 30.0% | |
| TCTTCAATTTACAGTCACAA+AGG | - | chr5.4:55409566-55409585 | MS.gene88797:intron | 30.0% | |
| TGAATATAACAGATCTACAC+CGG | - | chr5.4:55407571-55407590 | MS.gene88797:intron | 30.0% | |
| TGACCTTGTTGAATAGATTA+TGG | - | chr5.4:55409196-55409215 | MS.gene88797:intron | 30.0% | |
| TGTAGATCTGTTATATTCAG+AGG | + | chr5.4:55407570-55407589 | None:intergenic | 30.0% | |
| TGTGGAGAATAACAAACAAA+AGG | + | chr5.4:55410618-55410637 | None:intergenic | 30.0% | |
| TTTCCTCTGTTCGATAAATA+CGG | - | chr5.4:55408425-55408444 | MS.gene88797:CDS | 30.0% | |
| ! | AATGTATTTCTTTTACGCAG+TGG | - | chr5.4:55410247-55410266 | MS.gene88797:intron | 30.0% |
| ! | ACAAACAAAAGTACAGCATT+AGG | + | chr5.4:55410079-55410098 | None:intergenic | 30.0% |
| ! | TCTTTTCGTGATTAAGATCT+TGG | + | chr5.4:55407679-55407698 | None:intergenic | 30.0% |
| ! | TTAATTTTGCACCTTAAGGA+GGG | - | chr5.4:55409955-55409974 | MS.gene88797:intron | 30.0% |
| ! | TTTTTGATCTAAGTGCAGTT+TGG | - | chr5.4:55411080-55411099 | MS.gene88797:intron | 30.0% |
| !! | AGCATGTTAACTTGTCTAAA+TGG | - | chr5.4:55410001-55410020 | MS.gene88797:intron | 30.0% |
| !! | CTCTAAAGTAGACATGATAT+AGG | + | chr5.4:55411149-55411168 | None:intergenic | 30.0% |
| !! | TAAAGGTCATTTTCATCACT+CGG | + | chr5.4:55407850-55407869 | None:intergenic | 30.0% |
| !! | TATCATGTCTACTTTAGAGT+TGG | - | chr5.4:55411150-55411169 | MS.gene88797:CDS | 30.0% |
| !! | TGATTGTTTTATCACTTTGC+TGG | - | chr5.4:55411496-55411515 | MS.gene88797:CDS | 30.0% |
| !! | TGGGTTTTATAGTTATGATC+GGG | - | chr5.4:55411355-55411374 | MS.gene88797:intron | 30.0% |
| !! | TGTTATTATTGGTTCCTCTT+AGG | - | chr5.4:55408667-55408686 | MS.gene88797:intron | 30.0% |
| !! | TGTTGCTGTGTTGATAATAT+TGG | - | chr5.4:55411014-55411033 | MS.gene88797:intron | 30.0% |
| !! | TTGTCTTTGTTATTGTCCTT+GGG | - | chr5.4:55410095-55410114 | MS.gene88797:intron | 30.0% |
| !! | TTTAATTTTGCACCTTAAGG+AGG | - | chr5.4:55409954-55409973 | MS.gene88797:intron | 30.0% |
| !! | TTTGTCTTTGTTATTGTCCT+TGG | - | chr5.4:55410094-55410113 | MS.gene88797:intron | 30.0% |
| !!! | ACTTTAGAGTTGGTAACTTT+TGG | - | chr5.4:55411160-55411179 | MS.gene88797:CDS | 30.0% |
| !!! | GAGCTTTGAAATTACCATTT+TGG | - | chr5.4:55409733-55409752 | MS.gene88797:intron | 30.0% |
| !!! | GCTGTTTTTATTAGTTATCC+TGG | - | chr5.4:55409297-55409316 | MS.gene88797:CDS | 30.0% |
| !!! | TATTTTTTCAGGAAGAATGG+TGG | - | chr5.4:55408997-55409016 | MS.gene88797:intron | 30.0% |
| !!! | TTAGCCTTTGTTTTTATGCT+TGG | - | chr5.4:55409855-55409874 | MS.gene88797:intron | 30.0% |
| AATTGTTGTGCTTCCATTGT+CGG | + | chr5.4:55407643-55407662 | None:intergenic | 35.0% | |
| ACTAATGTCCAACTGTTTGT+AGG | - | chr5.4:55410312-55410331 | MS.gene88797:CDS | 35.0% | |
| ACTTACATTCTCTCAGCATT+AGG | + | chr5.4:55409061-55409080 | None:intergenic | 35.0% | |
| AGTCACGAATACAAAACTAC+CGG | - | chr5.4:55407418-55407437 | MS.gene88797:CDS | 35.0% | |
| ATGATAGGTATGAACGTGAT+AGG | - | chr5.4:55410390-55410409 | MS.gene88797:intron | 35.0% | |
| CAATTTACAGTCACAAAGGA+AGG | - | chr5.4:55409570-55409589 | MS.gene88797:intron | 35.0% | |
| CACTCCAAGCATAAAAACAA+AGG | + | chr5.4:55409862-55409881 | None:intergenic | 35.0% | |
| CATTTCCGTTGTTATAAGCA+GGG | - | chr5.4:55411284-55411303 | MS.gene88797:CDS | 35.0% | |
| CTGAAGGAAACAACAATGTA+TGG | + | chr5.4:55408385-55408404 | None:intergenic | 35.0% | |
| CTTACATTCTCTCAGCATTA+GGG | + | chr5.4:55409060-55409079 | None:intergenic | 35.0% | |
| GGTCTTCATTCATTGATACT+TGG | - | chr5.4:55410546-55410565 | MS.gene88797:intron | 35.0% | |
| TGATTAAGATCTTGGAGTTC+TGG | + | chr5.4:55407671-55407690 | None:intergenic | 35.0% | |
| TGATTCACAGTTGAAAATCG+CGG | + | chr5.4:55408195-55408214 | None:intergenic | 35.0% | |
| TTAGTGTCTTCTATTGTGTC+TGG | - | chr5.4:55409709-55409728 | MS.gene88797:intron | 35.0% | |
| ! | AATAAGGTGCTTATCCAAAC+AGG | + | chr5.4:55408694-55408713 | None:intergenic | 35.0% |
| ! | ATAAGGTGCTTATCCAAACA+GGG | + | chr5.4:55408693-55408712 | None:intergenic | 35.0% |
| ! | GGATGATTTGTCAATGTGAA+TGG | - | chr5.4:55411035-55411054 | MS.gene88797:intron | 35.0% |
| ! | GGTCTTATCAAAGTCATTGA+AGG | - | chr5.4:55411056-55411075 | MS.gene88797:intron | 35.0% |
| ! | TAATTTTGCACCTTAAGGAG+GGG | - | chr5.4:55409956-55409975 | MS.gene88797:intron | 35.0% |
| ! | TATCACTTTGCTGGTTAGAA+AGG | - | chr5.4:55411505-55411524 | MS.gene88797:CDS | 35.0% |
| ! | TTGATGATTGTTCGTGAGTT+TGG | - | chr5.4:55411443-55411462 | MS.gene88797:CDS | 35.0% |
| !! | AAAGGTCATTTTCATCACTC+GGG | + | chr5.4:55407849-55407868 | None:intergenic | 35.0% |
| !! | CATACATTGTTGTTTCCTTC+AGG | - | chr5.4:55408383-55408402 | MS.gene88797:intron | 35.0% |
| !! | CTTATTTCTATAAGCTCTCC+AGG | + | chr5.4:55409318-55409337 | None:intergenic | 35.0% |
| !! | GCTGTTTTCGTAAGCTATAT+TGG | - | chr5.4:55408808-55408827 | MS.gene88797:intron | 35.0% |
| !! | GGGTTTTATAGTTATGATCG+GGG | - | chr5.4:55411356-55411375 | MS.gene88797:intron | 35.0% |
| !! | TCGGTAGATTAGCTTGAATA+AGG | - | chr5.4:55408919-55408938 | MS.gene88797:intron | 35.0% |
| !! | TCTTTGGAAGAACCTTTTCT+CGG | + | chr5.4:55407706-55407725 | None:intergenic | 35.0% |
| !!! | AGCTTTTTCATAAGTTCTCC+TGG | - | chr5.4:55408876-55408895 | MS.gene88797:intron | 35.0% |
| !!! | GCTGGTTTTTATTTTCCTCA+CGG | - | chr5.4:55409498-55409517 | MS.gene88797:intron | 35.0% |
| AACAGTACCTTCGATCTCTA+GGG | + | chr5.4:55408472-55408491 | None:intergenic | 40.0% | |
| AACCACCCTGCTTATAACAA+CGG | + | chr5.4:55411292-55411311 | None:intergenic | 40.0% | |
| AAGATAGAGGCGGTTTGAAA+CGG | - | chr5.4:55407760-55407779 | MS.gene88797:intron | 40.0% | |
| AAGCTTCAAAGGCTGTTGAT+AGG | - | chr5.4:55408621-55408640 | MS.gene88797:intron | 40.0% | |
| AATGAAAAGAACAAGCCGTG+AGG | + | chr5.4:55409516-55409535 | None:intergenic | 40.0% | |
| AATGTTGACATTGTTGCCGT+TGG | - | chr5.4:55411404-55411423 | MS.gene88797:intron | 40.0% | |
| ACAGCAAGGACATTAAGAAG+TGG | + | chr5.4:55409662-55409681 | None:intergenic | 40.0% | |
| ACCACAACTGATCAAAGTCA+AGG | - | chr5.4:55407466-55407485 | MS.gene88797:CDS | 40.0% | |
| ACGGAAAGACTTGGATAACA+CGG | - | chr5.4:55407779-55407798 | MS.gene88797:intron | 40.0% | |
| ACTGTCCAGTTTGCAAAGTA+TGG | - | chr5.4:55409034-55409053 | MS.gene88797:intron | 40.0% | |
| AGAGAGAGAGAGAGAGATTA+CGG | + | chr5.4:55408299-55408318 | None:intergenic | 40.0% | |
| AGCATTAGGTCTCTGCTATA+AGG | + | chr5.4:55410065-55410084 | None:intergenic | 40.0% | |
| AGCCCTTCTCGAAATTCAAA+CGG | - | chr5.4:55410826-55410845 | MS.gene88797:intron | 40.0% | |
| AGGAGAAAGGTGACAAGTTA+AGG | + | chr5.4:55408150-55408169 | None:intergenic | 40.0% | |
| ATTACAGAGACAAGGGTTAC+AGG | - | chr5.4:55410345-55410364 | MS.gene88797:CDS | 40.0% | |
| ATTCCTTGCAGCATAGATCA+AGG | - | chr5.4:55410026-55410045 | MS.gene88797:intron | 40.0% | |
| CACCGTTTGAATTTCGAGAA+GGG | + | chr5.4:55410831-55410850 | None:intergenic | 40.0% | |
| CACGATGATTACAGAGACAA+GGG | - | chr5.4:55410338-55410357 | MS.gene88797:CDS | 40.0% | |
| CAGAGGAAATAGATCATCAG+CGG | + | chr5.4:55408414-55408433 | None:intergenic | 40.0% | |
| CCATTTCCGTTGTTATAAGC+AGG | - | chr5.4:55411283-55411302 | MS.gene88797:CDS | 40.0% | |
| CCTGCTTATAACAACGGAAA+TGG | + | chr5.4:55411286-55411305 | None:intergenic | 40.0% | |
| CGAAAAGAAACACCGAGAAA+AGG | - | chr5.4:55407691-55407710 | MS.gene88797:intron | 40.0% | |
| GAATAGATTATGGCCCTGTT+TGG | - | chr5.4:55409206-55409225 | MS.gene88797:intron | 40.0% | |
| GGAGAAAGGTGACAAGTTAA+GGG | + | chr5.4:55408149-55408168 | None:intergenic | 40.0% | |
| GGGCCATAATCTATTCAACA+AGG | + | chr5.4:55409202-55409221 | None:intergenic | 40.0% | |
| GTATGCTGATGAAGCTTCAA+AGG | - | chr5.4:55408610-55408629 | MS.gene88797:intron | 40.0% | |
| GTCGCAGTAGAAGTTATGAT+AGG | - | chr5.4:55410375-55410394 | MS.gene88797:intron | 40.0% | |
| TATGATCGGGGAAAAGTGAT+GGG | - | chr5.4:55411368-55411387 | MS.gene88797:intron | 40.0% | |
| TATTCAAACCCAAGGAAGTC+TGG | + | chr5.4:55411111-55411130 | None:intergenic | 40.0% | |
| TCACCGTTTGAATTTCGAGA+AGG | + | chr5.4:55410832-55410851 | None:intergenic | 40.0% | |
| TCACGATGATTACAGAGACA+AGG | - | chr5.4:55410337-55410356 | MS.gene88797:CDS | 40.0% | |
| TGATCTAAGTGCAGTTTGGT+AGG | - | chr5.4:55411084-55411103 | MS.gene88797:intron | 40.0% | |
| TTAGGTCTCTGCTATAAGGA+TGG | + | chr5.4:55410061-55410080 | None:intergenic | 40.0% | |
| TTATGATCGGGGAAAAGTGA+TGG | - | chr5.4:55411367-55411386 | MS.gene88797:intron | 40.0% | |
| TTGAATTTCGAGAAGGGCTT+CGG | + | chr5.4:55410825-55410844 | None:intergenic | 40.0% | |
| TTGCCGTATTTATCGAACAG+AGG | + | chr5.4:55408431-55408450 | None:intergenic | 40.0% | |
| ! | ATTGTTCGTGAGTTTGGTGA+CGG | - | chr5.4:55411449-55411468 | MS.gene88797:CDS | 40.0% |
| ! | CTAGGACTAGGACTTTTCTT+AGG | + | chr5.4:55410706-55410725 | None:intergenic | 40.0% |
| ! | GGTGACAAGTTAAGGGTTTT+TGG | + | chr5.4:55408142-55408161 | None:intergenic | 40.0% |
| ! | TTTTCATCCCTAGAGATCGA+AGG | - | chr5.4:55408462-55408481 | MS.gene88797:CDS | 40.0% |
| ! | TTTTGGACCTTGTAGTTGCT+AGG | - | chr5.4:55411177-55411196 | MS.gene88797:CDS | 40.0% |
| !! | TTTTCAGGAAGAATGGTGGA+TGG | - | chr5.4:55409001-55409020 | MS.gene88797:intron | 40.0% |
| !!! | CAAGTTAAGGGTTTTTGGTG+TGG | + | chr5.4:55408137-55408156 | None:intergenic | 40.0% |
| !!! | GAGTTCGTTATTGGTTTTGC+CGG | + | chr5.4:55407440-55407459 | None:intergenic | 40.0% |
| !!! | TTTTTTCGGTGGTGGTTCTT+TGG | + | chr5.4:55407722-55407741 | None:intergenic | 40.0% |
| AAAGACTTGGATAACACGGG+AGG | - | chr5.4:55407783-55407802 | MS.gene88797:intron | 45.0% | |
| AACGGAAGATTGACCGACAA+TGG | - | chr5.4:55407627-55407646 | MS.gene88797:intron | 45.0% | |
| AAGTAGGAGACCTTCCATCA+CGG | + | chr5.4:55410765-55410784 | None:intergenic | 45.0% | |
| AGAACCACCACCGAAAAAAC+AGG | - | chr5.4:55407723-55407742 | MS.gene88797:intron | 45.0% | |
| AGAAGAAGAAGAAGAGGAGG+AGG | + | chr5.4:55408170-55408189 | None:intergenic | 45.0% | |
| AGCAACAGGTACAGTAGTCA+AGG | + | chr5.4:55411001-55411020 | None:intergenic | 45.0% | |
| ATGATCGGGGAAAAGTGATG+GGG | - | chr5.4:55411369-55411388 | MS.gene88797:intron | 45.0% | |
| ATTGTCGGTCAATCTTCCGT+TGG | + | chr5.4:55407628-55407647 | None:intergenic | 45.0% | |
| CAAACAACCATGTCGCACTT+CGG | - | chr5.4:55408213-55408232 | MS.gene88797:CDS | 45.0% | |
| CATTCTATCATCGACGAAGC+AGG | - | chr5.4:55407500-55407519 | MS.gene88797:CDS | 45.0% | |
| CGGAAAGACTTGGATAACAC+GGG | - | chr5.4:55407780-55407799 | MS.gene88797:intron | 45.0% | |
| CTCCTTGAGCTCTTTGATCT+CGG | + | chr5.4:55409611-55409630 | None:intergenic | 45.0% | |
| CTGCTTCGTCGATGATAGAA+TGG | + | chr5.4:55407502-55407521 | None:intergenic | 45.0% | |
| CTTCTACTACCACAACACTC+TGG | + | chr5.4:55409687-55409706 | None:intergenic | 45.0% | |
| GAACAGTACCTTCGATCTCT+AGG | + | chr5.4:55408473-55408492 | None:intergenic | 45.0% | |
| GAACCACCACCGAAAAAACA+GGG | - | chr5.4:55407724-55407743 | MS.gene88797:intron | 45.0% | |
| GAGAGAAGAAGAAGAAGAGG+AGG | + | chr5.4:55408173-55408192 | None:intergenic | 45.0% | |
| GCCTTGACTTTGATCAGTTG+TGG | + | chr5.4:55407470-55407489 | None:intergenic | 45.0% | |
| GGAAAGTGATGTTGAGAACG+AGG | + | chr5.4:55408278-55408297 | None:intergenic | 45.0% | |
| TAGGGCCATACTTTGCAAAC+TGG | + | chr5.4:55409042-55409061 | None:intergenic | 45.0% | |
| TCCTTGAGCTCTTTGATCTC+GGG | + | chr5.4:55409610-55409629 | None:intergenic | 45.0% | |
| TCGTGATGCCTACAAACAGT+TGG | + | chr5.4:55410323-55410342 | None:intergenic | 45.0% | |
| TGAATTTCGAGAAGGGCTTC+GGG | + | chr5.4:55410824-55410843 | None:intergenic | 45.0% | |
| TTATCCAAACAGGGCCTAAG+AGG | + | chr5.4:55408684-55408703 | None:intergenic | 45.0% | |
| TTCCGTTGTTATAAGCAGGG+TGG | - | chr5.4:55411287-55411306 | MS.gene88797:CDS | 45.0% | |
| TTGTCGGTCAATCTTCCGTT+GGG | + | chr5.4:55407627-55407646 | None:intergenic | 45.0% | |
| TTTAAGGACCGGTGAATCGA+GGG | - | chr5.4:55408565-55408584 | MS.gene88797:CDS | 45.0% | |
| ! | AATCTTCCGTTGGGCTTTGA+TGG | + | chr5.4:55407618-55407637 | None:intergenic | 45.0% |
| ! | ACAACACTCTGGAAACAGCA+AGG | + | chr5.4:55409676-55409695 | None:intergenic | 45.0% |
| ! | CGGTTTGAAACGGAAAGACT+TGG | - | chr5.4:55407770-55407789 | MS.gene88797:intron | 45.0% |
| ! | GTCGACGTCGTTGTTCTTTT+TGG | + | chr5.4:55407532-55407551 | None:intergenic | 45.0% |
| ! | TACAGTAGTCAAGGCATCTC+TGG | + | chr5.4:55410992-55411011 | None:intergenic | 45.0% |
| ! | TATGAACGTGATAGGTACCG+TGG | - | chr5.4:55410398-55410417 | MS.gene88797:intron | 45.0% |
| ! | TGTAATCAGGACTGGCACTA+CGG | + | chr5.4:55410460-55410479 | None:intergenic | 45.0% |
| ! | TTAGGAGAAGGGCTCCTTTT+TGG | + | chr5.4:55410670-55410689 | None:intergenic | 45.0% |
| !! | GTTGCAAGAGCGCTGATATT+AGG | - | chr5.4:55411471-55411490 | MS.gene88797:CDS | 45.0% |
| !! | TACTCATAGTGGATGCTAGC+TGG | - | chr5.4:55409480-55409499 | MS.gene88797:intron | 45.0% |
| !! | TTGCTGTTTCCAGAGTGTTG+TGG | - | chr5.4:55409675-55409694 | MS.gene88797:intron | 45.0% |
| !! | TTTTAAGGACCGGTGAATCG+AGG | - | chr5.4:55408564-55408583 | MS.gene88797:CDS | 45.0% |
| ACAGAGACAAGGGTTACAGG+AGG | - | chr5.4:55410348-55410367 | MS.gene88797:CDS | 50.0% | |
| ACCGAAAAAACAGGGAGGAG+AGG | - | chr5.4:55407732-55407751 | MS.gene88797:intron | 50.0% | |
| AGAGGCGATGAAGATAGAGG+CGG | - | chr5.4:55407750-55407769 | MS.gene88797:intron | 50.0% | |
| AGGAGAGGCGATGAAGATAG+AGG | - | chr5.4:55407747-55407766 | MS.gene88797:intron | 50.0% | |
| ATGTCGCACTTCGGAAGACA+AGG | - | chr5.4:55408222-55408241 | MS.gene88797:CDS | 50.0% | |
| CCACCTTGATCTATGCTGCA+AGG | + | chr5.4:55410032-55410051 | None:intergenic | 50.0% | |
| CCGTAACCATCAAAGCCCAA+CGG | - | chr5.4:55407609-55407628 | MS.gene88797:intron | 50.0% | |
| CCTTGAGCTCTTTGATCTCG+GGG | + | chr5.4:55409609-55409628 | None:intergenic | 50.0% | |
| CCTTGCAGCATAGATCAAGG+TGG | - | chr5.4:55410029-55410048 | MS.gene88797:intron | 50.0% | |
| GAAGAAGAGGAGGAGGAGAA+AGG | + | chr5.4:55408163-55408182 | None:intergenic | 50.0% | |
| GACGCAGTCCTAGTCCAAAA+AGG | - | chr5.4:55410653-55410672 | MS.gene88797:intron | 50.0% | |
| GCAGAAGCAGATCAGTAGAC+AGG | - | chr5.4:55410525-55410544 | MS.gene88797:intron | 50.0% | |
| GCATTCACAAAGTCTGCCCA+AGG | + | chr5.4:55410114-55410133 | None:intergenic | 50.0% | |
| GCGGAGAGAAGAAGAAGAAG+AGG | + | chr5.4:55408176-55408195 | None:intergenic | 50.0% | |
| GTCACATCATCCCCTCCTTA+AGG | + | chr5.4:55409969-55409988 | None:intergenic | 50.0% | |
| GTGTTAACCCGTGCAATGCA+CGG | + | chr5.4:55408068-55408087 | None:intergenic | 50.0% | |
| GTTGAGAACGAGGAGAGAGT+AGG | + | chr5.4:55408268-55408287 | None:intergenic | 50.0% | |
| TCATCAGCGGTTGTACCTGA+AGG | + | chr5.4:55408401-55408420 | None:intergenic | 50.0% | |
| TGACACAGACACAGCACCAA+CGG | + | chr5.4:55411423-55411442 | None:intergenic | 50.0% | |
| TGATCGGGGAAAAGTGATGG+GGG | - | chr5.4:55411370-55411389 | MS.gene88797:intron | 50.0% | |
| TGGATCGCTGGAAGCAAAGA+AGG | + | chr5.4:55408117-55408136 | None:intergenic | 50.0% | |
| TGGTAGGACCAGACTTCCTT+GGG | - | chr5.4:55411100-55411119 | MS.gene88797:intron | 50.0% | |
| TGTTAACCCGTGCAATGCAC+GGG | + | chr5.4:55408067-55408086 | None:intergenic | 50.0% | |
| TTAAGGACCGGTGAATCGAG+GGG | - | chr5.4:55408566-55408585 | MS.gene88797:CDS | 50.0% | |
| TTGGTAGGACCAGACTTCCT+TGG | - | chr5.4:55411099-55411118 | MS.gene88797:intron | 50.0% | |
| TTGTCTTCCGAAGTGCGACA+TGG | + | chr5.4:55408223-55408242 | None:intergenic | 50.0% | |
| ! | AAAAGTGATGGGGGCCTGAT+AGG | - | chr5.4:55411379-55411398 | MS.gene88797:intron | 50.0% |
| ! | AACGTGATAGGTACCGTGGT+GGG | - | chr5.4:55410402-55410421 | MS.gene88797:intron | 50.0% |
| ! | AAGGCTGTTGATAGGCTCGA+TGG | - | chr5.4:55408629-55408648 | MS.gene88797:intron | 50.0% |
| ! | ACGGTGATGGTGTTCAGATC+CGG | + | chr5.4:55407593-55407612 | None:intergenic | 50.0% |
| ! | ATACTCGTAGCCGTGATGGA+AGG | - | chr5.4:55410752-55410771 | MS.gene88797:intron | 50.0% |
| ! | CCGTTGGGCTTTGATGGTTA+CGG | + | chr5.4:55407612-55407631 | None:intergenic | 50.0% |
| ! | GAAGGGCTCCTTTTTGGACT+AGG | + | chr5.4:55410664-55410683 | None:intergenic | 50.0% |
| ! | GGCTTTGATGGTTACGGTGA+TGG | + | chr5.4:55407606-55407625 | None:intergenic | 50.0% |
| ! | GGTGTCGTCGAGTTCGTTAT+TGG | + | chr5.4:55407449-55407468 | None:intergenic | 50.0% |
| ! | TGATTACAAGCGCCGTGGAA+GGG | - | chr5.4:55410472-55410491 | MS.gene88797:CDS | 50.0% |
| !!! | GCCTCTCCTCCCTGTTTTTT+CGG | + | chr5.4:55407736-55407755 | None:intergenic | 50.0% |
| !!! | TCTCCTCCCTGTTTTTTCGG+TGG | + | chr5.4:55407733-55407752 | None:intergenic | 50.0% |
| ACGGCGCTTGTAATCAGGAC+TGG | + | chr5.4:55410468-55410487 | None:intergenic | 55.0% | |
| ACTAGGACTGCGTCTTGCAG+GGG | + | chr5.4:55410647-55410666 | None:intergenic | 55.0% | |
| AGCGAATCCCCTCGATTCAC+CGG | + | chr5.4:55408576-55408595 | None:intergenic | 55.0% | |
| CCACCACCGAAAAAACAGGG+AGG | - | chr5.4:55407727-55407746 | MS.gene88797:intron | 55.0% | |
| CCATCACGGCTACGAGTATC+AGG | + | chr5.4:55410751-55410770 | None:intergenic | 55.0% | |
| CCCCGAGATCAAAGAGCTCA+AGG | - | chr5.4:55409606-55409625 | MS.gene88797:intron | 55.0% | |
| CCTATCACCCGTGCATTGCA+CGG | - | chr5.4:55408057-55408076 | MS.gene88797:intron | 55.0% | |
| CCTGATACTCGTAGCCGTGA+TGG | - | chr5.4:55410748-55410767 | MS.gene88797:intron | 55.0% | |
| CTATCACCCGTGCATTGCAC+GGG | - | chr5.4:55408058-55408077 | MS.gene88797:intron | 55.0% | |
| CTTCCACGGCGCTTGTAATC+AGG | + | chr5.4:55410473-55410492 | None:intergenic | 55.0% | |
| GACTAGGACTGCGTCTTGCA+GGG | + | chr5.4:55410648-55410667 | None:intergenic | 55.0% | |
| GACTTGGATAACACGGGAGG+CGG | - | chr5.4:55407786-55407805 | MS.gene88797:intron | 55.0% | |
| GAGTAGGTGTCAGCGATGTC+AGG | + | chr5.4:55408252-55408271 | None:intergenic | 55.0% | |
| GGAGAGACACTGCGAGAAGT+AGG | + | chr5.4:55410781-55410800 | None:intergenic | 55.0% | |
| GGTTCCTCTTAGGCCCTGTT+TGG | - | chr5.4:55408677-55408696 | MS.gene88797:intron | 55.0% | |
| GTATCAGGACTTTCGCGACG+TGG | + | chr5.4:55410736-55410755 | None:intergenic | 55.0% | |
| TAGGTGTCAGCGATGTCAGG+AGG | + | chr5.4:55408249-55408268 | None:intergenic | 55.0% | |
| TGGCACTACGGCTTCTGCTT+CGG | + | chr5.4:55410448-55410467 | None:intergenic | 55.0% | |
| ! | AGTCCTGATTACAAGCGCCG+TGG | - | chr5.4:55410467-55410486 | MS.gene88797:CDS | 55.0% |
| ! | ATTACAAGCGCCGTGGAAGG+GGG | - | chr5.4:55410474-55410493 | MS.gene88797:CDS | 55.0% |
| ! | CTGATTACAAGCGCCGTGGA+AGG | - | chr5.4:55410471-55410490 | MS.gene88797:CDS | 55.0% |
| ! | GAACGTGATAGGTACCGTGG+TGG | - | chr5.4:55410401-55410420 | MS.gene88797:intron | 55.0% |
| ! | GATTACAAGCGCCGTGGAAG+GGG | - | chr5.4:55410473-55410492 | MS.gene88797:CDS | 55.0% |
| !! | CGTGGACTAGGACTAGGACT+AGG | + | chr5.4:55410718-55410737 | None:intergenic | 55.0% |
| !!! | CCTCCCTGTTTTTTCGGTGG+TGG | + | chr5.4:55407730-55407749 | None:intergenic | 55.0% |
| !!! | GGGTTTTTGGTGTGGATCGC+TGG | + | chr5.4:55408129-55408148 | None:intergenic | 55.0% |
| ACCTTCTCCTGCTGGGACTG+CGG | + | chr5.4:55409634-55409653 | None:intergenic | 60.0% | |
| AGTCCCTGTCTCTCCCACCA+CGG | + | chr5.4:55410418-55410437 | None:intergenic | 60.0% | |
| CCGTGCAATGCACGGGTGAT+AGG | + | chr5.4:55408060-55408079 | None:intergenic | 60.0% | |
| GAAGGGCTTCGGGAAGCTTC+AGG | + | chr5.4:55410814-55410833 | None:intergenic | 60.0% | |
| GGACTAGGACTGCGTCTTGC+AGG | + | chr5.4:55410649-55410668 | None:intergenic | 60.0% | |
| GGACTTTCGCGACGTGGACT+AGG | + | chr5.4:55410730-55410749 | None:intergenic | 60.0% | |
| GGCTTCGGGAAGCTTCAGGA+CGG | + | chr5.4:55410810-55410829 | None:intergenic | 60.0% | |
| GGTACGCACCTTCTCCTGCT+GGG | + | chr5.4:55409641-55409660 | None:intergenic | 60.0% | |
| TACGGCTTCTGCTTCGGCGA+CGG | + | chr5.4:55410442-55410461 | None:intergenic | 60.0% | |
| TCTCGCAGTGTCTCTCCACG+AGG | - | chr5.4:55410784-55410803 | MS.gene88797:intron | 60.0% | |
| TGGTACGCACCTTCTCCTGC+TGG | + | chr5.4:55409642-55409661 | None:intergenic | 60.0% | |
| ! | AACACGGGAGGCGGTTTGCT+TGG | - | chr5.4:55407795-55407814 | MS.gene88797:intron | 60.0% |
| ! | GTACCGTGGTGGGAGAGACA+GGG | - | chr5.4:55410412-55410431 | MS.gene88797:intron | 60.0% |
| !! | TCGCGACGTGGACTAGGACT+AGG | + | chr5.4:55410724-55410743 | None:intergenic | 60.0% |
| CATCACAGCGCCCCCTTCCA+CGG | + | chr5.4:55410487-55410506 | None:intergenic | 65.0% | |
| GAAGCTTCAGGACGGCCTCG+TGG | + | chr5.4:55410802-55410821 | None:intergenic | 65.0% | |
| GACTGCGTCTTGCAGGGGAG+CGG | + | chr5.4:55410642-55410661 | None:intergenic | 65.0% | |
| ! | GGTACCGTGGTGGGAGAGAC+AGG | - | chr5.4:55410411-55410430 | MS.gene88797:intron | 65.0% |
| CAAGGAGCCGCAGTCCCAGC+AGG | - | chr5.4:55409624-55409643 | MS.gene88797:intron | 70.0% | |
| GCCGCAGTCCCAGCAGGAGA+AGG | - | chr5.4:55409630-55409649 | MS.gene88797:intron | 70.0% | |
| GTCTTGCAGGGGAGCGGCTG+TGG | + | chr5.4:55410636-55410655 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 55407403 | 55411538 | 55407403 | ID=MS.gene88797 |
| chr5.4 | mRNA | 55407403 | 55411538 | 55407403 | ID=MS.gene88797.t1;Parent=MS.gene88797 |
| chr5.4 | exon | 55411420 | 55411538 | 55411420 | ID=MS.gene88797.t1.exon1;Parent=MS.gene88797.t1 |
| chr5.4 | CDS | 55411420 | 55411538 | 55411420 | ID=cds.MS.gene88797.t1;Parent=MS.gene88797.t1 |
| chr5.4 | exon | 55411134 | 55411306 | 55411134 | ID=MS.gene88797.t1.exon2;Parent=MS.gene88797.t1 |
| chr5.4 | CDS | 55411134 | 55411306 | 55411134 | ID=cds.MS.gene88797.t1;Parent=MS.gene88797.t1 |
| chr5.4 | exon | 55410458 | 55410536 | 55410458 | ID=MS.gene88797.t1.exon3;Parent=MS.gene88797.t1 |
| chr5.4 | CDS | 55410458 | 55410536 | 55410458 | ID=cds.MS.gene88797.t1;Parent=MS.gene88797.t1 |
| chr5.4 | exon | 55410291 | 55410370 | 55410291 | ID=MS.gene88797.t1.exon4;Parent=MS.gene88797.t1 |
| chr5.4 | CDS | 55410291 | 55410370 | 55410291 | ID=cds.MS.gene88797.t1;Parent=MS.gene88797.t1 |
| chr5.4 | exon | 55409867 | 55409933 | 55409867 | ID=MS.gene88797.t1.exon5;Parent=MS.gene88797.t1 |
| chr5.4 | CDS | 55409867 | 55409933 | 55409867 | ID=cds.MS.gene88797.t1;Parent=MS.gene88797.t1 |
| chr5.4 | exon | 55409290 | 55409361 | 55409290 | ID=MS.gene88797.t1.exon6;Parent=MS.gene88797.t1 |
| chr5.4 | CDS | 55409290 | 55409361 | 55409290 | ID=cds.MS.gene88797.t1;Parent=MS.gene88797.t1 |
| chr5.4 | exon | 55408395 | 55408607 | 55408395 | ID=MS.gene88797.t1.exon7;Parent=MS.gene88797.t1 |
| chr5.4 | CDS | 55408395 | 55408607 | 55408395 | ID=cds.MS.gene88797.t1;Parent=MS.gene88797.t1 |
| chr5.4 | exon | 55408089 | 55408302 | 55408089 | ID=MS.gene88797.t1.exon8;Parent=MS.gene88797.t1 |
| chr5.4 | CDS | 55408089 | 55408302 | 55408089 | ID=cds.MS.gene88797.t1;Parent=MS.gene88797.t1 |
| chr5.4 | exon | 55407403 | 55407540 | 55407403 | ID=MS.gene88797.t1.exon9;Parent=MS.gene88797.t1 |
| chr5.4 | CDS | 55407403 | 55407540 | 55407403 | ID=cds.MS.gene88797.t1;Parent=MS.gene88797.t1 |
| Gene Sequence |
| Protein sequence |
