Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88808.t1 | XP_013468821.1 | 98.1 | 688 | 13 | 0 | 1 | 688 | 66 | 753 | 0.00E+00 | 1342.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88808.t1 | A0A072VNA2 | 98.1 | 688 | 13 | 0 | 1 | 688 | 66 | 753 | 0.0e+00 | 1342.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene88808 | -0.818725 | 1.69E-52 | -1.69E-46 |
| MS.gene050752 | MS.gene88808 | -0.806821 | 6.83E-50 | -1.69E-46 |
| MS.gene050955 | MS.gene88808 | -0.8104 | 1.17E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene88808 | -0.82428 | 8.79E-54 | -1.69E-46 |
| MS.gene05134 | MS.gene88808 | -0.82616 | 3.16E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene88808 | -0.819079 | 1.40E-52 | -1.69E-46 |
| MS.gene054403 | MS.gene88808 | -0.806968 | 6.36E-50 | -1.69E-46 |
| MS.gene055162 | MS.gene88808 | -0.806715 | 7.19E-50 | -1.69E-46 |
| MS.gene057694 | MS.gene88808 | -0.818161 | 2.26E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene88808 | -0.872211 | 3.79E-67 | -1.69E-46 |
| MS.gene060429 | MS.gene88808 | -0.822088 | 2.86E-53 | -1.69E-46 |
| MS.gene060917 | MS.gene88808 | -0.824356 | 8.44E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88808.t1 | MTR_1g077190 | 98.110 | 688 | 13 | 0 | 1 | 688 | 66 | 753 | 0.0 | 1400 |
| MS.gene88808.t1 | MTR_1g077190 | 97.238 | 688 | 13 | 1 | 1 | 688 | 66 | 747 | 0.0 | 1383 |
| MS.gene88808.t1 | MTR_8g010360 | 31.551 | 561 | 315 | 10 | 122 | 681 | 45 | 537 | 1.50e-75 | 253 |
| MS.gene88808.t1 | MTR_8g010360 | 31.512 | 549 | 307 | 10 | 122 | 669 | 45 | 525 | 3.18e-74 | 249 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88808.t1 | AT5G23490 | 52.654 | 716 | 273 | 9 | 1 | 688 | 52 | 729 | 0.0 | 664 |
| MS.gene88808.t1 | AT5G23490 | 58.574 | 589 | 209 | 5 | 101 | 688 | 6 | 560 | 0.0 | 648 |
| MS.gene88808.t1 | AT5G23490 | 52.782 | 701 | 265 | 9 | 1 | 673 | 52 | 714 | 0.0 | 646 |
| MS.gene88808.t1 | AT5G23490 | 52.263 | 685 | 261 | 9 | 1 | 657 | 52 | 698 | 0.0 | 621 |
| MS.gene88808.t1 | AT5G08440 | 50.759 | 725 | 270 | 13 | 1 | 688 | 52 | 726 | 0.0 | 619 |
| MS.gene88808.t1 | AT5G08440 | 50.621 | 725 | 270 | 13 | 1 | 688 | 52 | 725 | 0.0 | 618 |
| MS.gene88808.t1 | AT5G08440 | 47.792 | 770 | 268 | 15 | 1 | 688 | 52 | 769 | 0.0 | 598 |
| MS.gene88808.t1 | AT5G23510 | 56.985 | 272 | 99 | 5 | 414 | 683 | 6 | 261 | 7.01e-98 | 302 |
| MS.gene88808.t1 | AT5G23510 | 57.249 | 269 | 97 | 5 | 417 | 683 | 48 | 300 | 9.87e-98 | 303 |
| MS.gene88808.t1 | AT5G23510 | 57.915 | 259 | 92 | 4 | 414 | 671 | 6 | 248 | 2.03e-96 | 298 |
| MS.gene88808.t1 | AT3G03560 | 42.396 | 217 | 119 | 2 | 465 | 680 | 309 | 520 | 2.89e-56 | 200 |
| MS.gene88808.t1 | AT3G03560 | 36.943 | 157 | 94 | 1 | 116 | 267 | 20 | 176 | 1.19e-20 | 96.7 |
Find 205 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATATGGCTCTGCATTTC+AGG | 0.154329 | 1.3:-55444323 | None:intergenic |
| TTCGCGTTCCCGGGCCTTAA+TGG | 0.170056 | 1.3:-55434700 | None:intergenic |
| CCGGCTTAGGTCCGAGCTTC+TGG | 0.184157 | 1.3:+55431538 | MS.gene88808:CDS |
| ACTGTAACCTTCTTTCTTAA+TGG | 0.211432 | 1.3:-55444549 | None:intergenic |
| GAATTAGAATTATTTGTTTC+AGG | 0.218422 | 1.3:-55434582 | None:intergenic |
| ATAGAGGGCCTTCAAATTTC+AGG | 0.222760 | 1.3:+55442545 | MS.gene88808:CDS |
| TTTGAGAATAGTCAAATAAA+TGG | 0.241991 | 1.3:+55434279 | MS.gene88808:CDS |
| TTCTTAATGGCCAATGTTGC+TGG | 0.248850 | 1.3:-55444536 | None:intergenic |
| AGACCGGATATCTTGATATA+TGG | 0.266924 | 1.3:+55444510 | MS.gene88808:intron |
| TTATTTGACTATTCTCAAAA+TGG | 0.271174 | 1.3:-55434275 | None:intergenic |
| TATTTAGGATCTGGCCATTA+AGG | 0.274115 | 1.3:+55434686 | MS.gene88808:intron |
| AACACCTTCAATATAATTAA+AGG | 0.279049 | 1.3:-55442806 | None:intergenic |
| TCAAGAACTGGTGGTAAATA+TGG | 0.296011 | 1.3:-55441869 | None:intergenic |
| AAGAAGAGATCATTCTATTA+AGG | 0.307921 | 1.3:+55434721 | MS.gene88808:CDS |
| TGATCTCTTCTTCGCGTTCC+CGG | 0.309511 | 1.3:-55434710 | None:intergenic |
| ATTTCAGGAGATCCCTTTCC+AGG | 0.328097 | 1.3:+55442560 | MS.gene88808:CDS |
| CATGCCTGAAGTTCCCTTCC+TGG | 0.336429 | 1.3:-55442578 | None:intergenic |
| CGAGCTTCTGGGTAAAATTC+AGG | 0.341286 | 1.3:+55431550 | MS.gene88808:CDS |
| TGTGAAAACTCCTCTCTATA+TGG | 0.343377 | 1.3:-55444337 | None:intergenic |
| GAACTCCATTGGTGCACCTT+TGG | 0.344778 | 1.3:+55439544 | MS.gene88808:CDS |
| CAGAAAGAGGGGAAGGAGGA+AGG | 0.345676 | 1.3:+55446406 | MS.gene88808:CDS |
| TCCACAGGCAGCTGATCATT+TGG | 0.346400 | 1.3:-55434318 | None:intergenic |
| TCTGTTATTACAACTCCATT+TGG | 0.355033 | 1.3:-55444587 | None:intergenic |
| AGAGAGAGACACCTGCTAAC+TGG | 0.357400 | 1.3:+55441789 | MS.gene88808:CDS |
| GCATTGCCATCAAGCCTTGC+CGG | 0.368979 | 1.3:-55434560 | None:intergenic |
| ACGTCTTACCTATGCATTGC+AGG | 0.369003 | 1.3:+55435130 | MS.gene88808:CDS |
| TTCATATAAAGTTTCTCTTT+CGG | 0.374444 | 1.3:+55444370 | MS.gene88808:CDS |
| CGAGAATCATGATCTCCTTC+TGG | 0.377181 | 1.3:-55434525 | None:intergenic |
| GGAGAGATTGACCTCATAAA+TGG | 0.378578 | 1.3:-55434369 | None:intergenic |
| AAGTCCAGCCTCTGGATAAC+AGG | 0.378730 | 1.3:+55442973 | MS.gene88808:CDS |
| TGTTGGACTTCCAGTGGATT+CGG | 0.379090 | 1.3:+55442767 | MS.gene88808:intron |
| CTTCCAGTGGATTCGGCACC+TGG | 0.381674 | 1.3:+55442774 | MS.gene88808:intron |
| ATATGGAGAATATGAGGAAC+TGG | 0.382361 | 1.3:-55441852 | None:intergenic |
| CATTGCCATCAAGCCTTGCC+GGG | 0.385101 | 1.3:-55434559 | None:intergenic |
| CATCAGGAACAGGTGGCTGC+AGG | 0.385975 | 1.3:-55435396 | None:intergenic |
| CCATGACCTGGTTCCTTCCA+TGG | 0.392679 | 1.3:-55434114 | None:intergenic |
| TTCACCCCGGCAAGGCTTGA+TGG | 0.393328 | 1.3:+55434554 | MS.gene88808:CDS |
| GGATTATTCTTCAACAAGTA+AGG | 0.396389 | 1.3:+55446428 | MS.gene88808:CDS |
| TTTCTTCAATTATGTCTTGT+CGG | 0.402541 | 1.3:-55435103 | None:intergenic |
| CTGTAGGTTGTGATTCCATA+TGG | 0.403740 | 1.3:+55445076 | MS.gene88808:intron |
| TCAGCACTGATAAGATAGTT+TGG | 0.405469 | 1.3:-55442924 | None:intergenic |
| CTTTCCAGGAAGGGAACTTC+AGG | 0.406810 | 1.3:+55442574 | MS.gene88808:CDS |
| GATCTCTTCTTCGCGTTCCC+GGG | 0.408170 | 1.3:-55434709 | None:intergenic |
| TACCAGAGTGGCATAGGTGG+TGG | 0.408446 | 1.3:+55439760 | MS.gene88808:CDS |
| TCTGGGTAAAATTCAGGAAC+TGG | 0.414732 | 1.3:+55431556 | MS.gene88808:CDS |
| CTGAGTAACTACCTGGTGAT+TGG | 0.414916 | 1.3:-55441654 | None:intergenic |
| TCATCAACAGTAGTATTATA+AGG | 0.416528 | 1.3:-55441827 | None:intergenic |
| TCCACTTCATTGTTGCTGAC+AGG | 0.416586 | 1.3:-55441737 | None:intergenic |
| CACCACTAGTTGTAACTTTG+AGG | 0.421962 | 1.3:+55442619 | MS.gene88808:CDS |
| TCCTCAGGCAGGCACTGGTT+GGG | 0.425250 | 1.3:+55439723 | MS.gene88808:CDS |
| GACAGGTAGAAGAGAATAAC+CGG | 0.426280 | 1.3:+55431519 | None:intergenic |
| TCAGCCCTCTGTTGATCCTC+AGG | 0.428770 | 1.3:+55439708 | MS.gene88808:CDS |
| CTAACAATGGACTGGGCATC+AGG | 0.432424 | 1.3:-55435412 | None:intergenic |
| GACACTCCGCATGAATACTA+TGG | 0.433972 | 1.3:+55441680 | MS.gene88808:CDS |
| CGGCTTAGGTCCGAGCTTCT+GGG | 0.434396 | 1.3:+55431539 | MS.gene88808:CDS |
| TTCTAATTCCTTACTGAAGC+AGG | 0.435542 | 1.3:+55434596 | MS.gene88808:CDS |
| AGGCACTGGTTGGGATGCGA+TGG | 0.436458 | 1.3:+55439732 | MS.gene88808:CDS |
| GGTTCCTTTAATTATATTGA+AGG | 0.440684 | 1.3:+55442802 | MS.gene88808:CDS |
| AGAAAGAGGGGAAGGAGGAA+GGG | 0.441587 | 1.3:+55446407 | MS.gene88808:CDS |
| ATCCTCAGGCAGGCACTGGT+TGG | 0.441633 | 1.3:+55439722 | MS.gene88808:CDS |
| TTGGGGAGATATTCACCTCT+TGG | 0.442696 | 1.3:+55439811 | MS.gene88808:CDS |
| CGTCAGTCATTTCCATCATC+AGG | 0.444341 | 1.3:+55434150 | MS.gene88808:CDS |
| ATTGTGTAGCAACATTTGTA+TGG | 0.452679 | 1.3:-55439514 | None:intergenic |
| GGTTCCTTCCATGGAGCACC+TGG | 0.453869 | 1.3:-55434105 | None:intergenic |
| AATTCTGAAATATGACCATA+TGG | 0.456009 | 1.3:-55445091 | None:intergenic |
| GAAGAAGGTTCTTCAAGAAC+TGG | 0.456615 | 1.3:-55441881 | None:intergenic |
| TGATCCATTACCAGCTATAG+AGG | 0.460172 | 1.3:+55442529 | MS.gene88808:CDS |
| GAGTGGCATAGGTGGTGGGC+TGG | 0.461565 | 1.3:+55439765 | MS.gene88808:CDS |
| TGCCATTGAAGTCCAGCCTC+TGG | 0.462909 | 1.3:+55442965 | MS.gene88808:CDS |
| CTATGGTCCCCATCACCCTC+TGG | 0.462959 | 1.3:-55441764 | None:intergenic |
| GTTGATCCTCAGGCAGGCAC+TGG | 0.467798 | 1.3:+55439718 | MS.gene88808:CDS |
| TAGAAGAGAATAACCGGCTT+AGG | 0.468731 | 1.3:+55431525 | MS.gene88808:CDS |
| TTTGATATCACGTACATGCT+TGG | 0.469259 | 1.3:-55434390 | None:intergenic |
| GGGACAGAAAGAGGGGAAGG+AGG | 0.474019 | 1.3:+55446402 | MS.gene88808:CDS |
| CCCTCTGTTGATCCTCAGGC+AGG | 0.474269 | 1.3:+55439712 | MS.gene88808:CDS |
| ATGGACTGGGCATCAGGAAC+AGG | 0.474301 | 1.3:-55435406 | None:intergenic |
| GACCGGATATCTTGATATAT+GGG | 0.476335 | 1.3:+55444511 | MS.gene88808:intron |
| CCACTTCATTGTTGCTGACA+GGG | 0.480306 | 1.3:-55441736 | None:intergenic |
| CATATTCAATTACCTGATGA+TGG | 0.481725 | 1.3:-55434162 | None:intergenic |
| GTCAGGATGCACAGCAAGAA+AGG | 0.482547 | 1.3:+55435329 | MS.gene88808:intron |
| ATCAAATGCAGCGGACCAAA+TGG | 0.483199 | 1.3:+55444572 | MS.gene88808:CDS |
| TTTGTTATACGTGGCTCCAC+TGG | 0.483383 | 1.3:+55445112 | MS.gene88808:CDS |
| TGACATTGCTAACAATGGAC+TGG | 0.485025 | 1.3:-55435420 | None:intergenic |
| ACTTACCCACTAACATCTGT+TGG | 0.486028 | 1.3:-55445166 | None:intergenic |
| AGGGATCTCCTGAAATTTGA+AGG | 0.487131 | 1.3:-55442553 | None:intergenic |
| TGAAGTTCCCTTCCTGGAAA+GGG | 0.487655 | 1.3:-55442572 | None:intergenic |
| GAATGTTGATGCTGATGACT+TGG | 0.489516 | 1.3:+55439792 | MS.gene88808:CDS |
| TGGATGATCCAGAGGGTGAT+GGG | 0.490634 | 1.3:+55441756 | MS.gene88808:CDS |
| ACATTGGCCATTAAGAAAGA+AGG | 0.491563 | 1.3:+55444542 | MS.gene88808:CDS |
| ACGCAATGAAAAGTATGTCT+TGG | 0.493375 | 1.3:+55434881 | MS.gene88808:CDS |
| TTCCCATATATCAAGATATC+CGG | 0.496905 | 1.3:-55444513 | None:intergenic |
| TGCAGGCAGGGGACAGAAAG+AGG | 0.498091 | 1.3:+55446393 | MS.gene88808:intron |
| CCTGGTGATTGGGTACATCA+TGG | 0.498164 | 1.3:-55441643 | None:intergenic |
| AGCTGTCTTCACCATTTATG+AGG | 0.498949 | 1.3:+55434358 | MS.gene88808:CDS |
| AGGATCTGGCCATTAAGGCC+CGG | 0.504471 | 1.3:+55434691 | MS.gene88808:intron |
| GTCTTGTTGCTGTTGATCAA+AGG | 0.508842 | 1.3:-55435048 | None:intergenic |
| GGATCTGGCCATTAAGGCCC+GGG | 0.508867 | 1.3:+55434692 | MS.gene88808:intron |
| TGAGTAACTACCTGGTGATT+GGG | 0.510016 | 1.3:-55441653 | None:intergenic |
| CTGAAGTTCCCTTCCTGGAA+AGG | 0.510257 | 1.3:-55442573 | None:intergenic |
| ATTTGAAGGCCCTCTATAGC+TGG | 0.510743 | 1.3:-55442539 | None:intergenic |
| TTGTCAGAACTCCAGTTAGC+AGG | 0.513672 | 1.3:-55441800 | None:intergenic |
| CTTACCCACTAACATCTGTT+GGG | 0.517206 | 1.3:-55445165 | None:intergenic |
| TGGATTCGGCACCTGGATGA+TGG | 0.517246 | 1.3:+55442781 | MS.gene88808:CDS |
| GATATTCACCTCTTGGAAGC+AGG | 0.517742 | 1.3:+55439818 | MS.gene88808:CDS |
| CAGGGGACAGAAAGAGGGGA+AGG | 0.523467 | 1.3:+55446399 | MS.gene88808:CDS |
| AGGAGATCCCTTTCCAGGAA+GGG | 0.524902 | 1.3:+55442565 | MS.gene88808:CDS |
| CCTTGTAGATGCCGCATCAA+AGG | 0.525427 | 1.3:+55435070 | MS.gene88808:CDS |
| GCGCATAGCATATATGCGTC+TGG | 0.526607 | 1.3:+55434908 | MS.gene88808:CDS |
| CAGGAGATCCCTTTCCAGGA+AGG | 0.528847 | 1.3:+55442564 | MS.gene88808:CDS |
| GTGGATGATCCAGAGGGTGA+TGG | 0.531365 | 1.3:+55441755 | MS.gene88808:CDS |
| CAATCACCAGGTAGTTACTC+AGG | 0.531437 | 1.3:+55441655 | MS.gene88808:CDS |
| ATCAGGAACAGGTGGCTGCA+GGG | 0.531462 | 1.3:-55435395 | None:intergenic |
| GCTTCCTGTTATCCAGAGGC+TGG | 0.536268 | 1.3:-55442977 | None:intergenic |
| GGTCGCTACCAGAGTGGCAT+AGG | 0.536873 | 1.3:+55439754 | MS.gene88808:CDS |
| TATGCTGAGGTACCAGTTCG+AGG | 0.537178 | 1.3:-55439666 | None:intergenic |
| AATGTTGATGCTGATGACTT+GGG | 0.538781 | 1.3:+55439793 | MS.gene88808:CDS |
| CAATCACCATTGAACTCCAT+TGG | 0.539365 | 1.3:+55439533 | MS.gene88808:CDS |
| GCTTCATACGTTCCATGACC+TGG | 0.539584 | 1.3:-55434126 | None:intergenic |
| CTGGTGATTGGGTACATCAT+GGG | 0.542003 | 1.3:-55441642 | None:intergenic |
| CGCTACCAGAGTGGCATAGG+TGG | 0.542611 | 1.3:+55439757 | MS.gene88808:CDS |
| TTGGGTACATCATGGGCTAA+AGG | 0.544021 | 1.3:-55441635 | None:intergenic |
| GCCCACCACCTATGCCACTC+TGG | 0.544882 | 1.3:-55439762 | None:intergenic |
| CCAGAAGCTCGGACCTAAGC+CGG | 0.547460 | 1.3:-55431538 | None:intergenic |
| AGGCCCTCTATAGCTGGTAA+TGG | 0.547579 | 1.3:-55442533 | None:intergenic |
| AATCAAGTCCAGGTGCTCCA+TGG | 0.547704 | 1.3:+55434097 | MS.gene88808:CDS |
| GCAGGCAGGGGACAGAAAGA+GGG | 0.548443 | 1.3:+55446394 | MS.gene88808:intron |
| CCTTTGATGCGGCATCTACA+AGG | 0.548663 | 1.3:-55435070 | None:intergenic |
| GGCACTGGTTGGGATGCGAT+GGG | 0.549474 | 1.3:+55439733 | MS.gene88808:CDS |
| CCTTCAGAAAACGAAGAAGA+AGG | 0.549574 | 1.3:-55441896 | None:intergenic |
| TGGTAAATATGGAGAATATG+AGG | 0.550745 | 1.3:-55441858 | None:intergenic |
| CCATGGAAGGAACCAGGTCA+TGG | 0.552046 | 1.3:+55434114 | MS.gene88808:CDS |
| ATCCAGAGGCTGGACTTCAA+TGG | 0.552235 | 1.3:-55442967 | None:intergenic |
| GATTATTCTTCAACAAGTAA+GGG | 0.552399 | 1.3:+55446429 | MS.gene88808:CDS |
| ACAGAGGTTATATGAACCAC+TGG | 0.556656 | 1.3:+55434068 | MS.gene88808:intron |
| CATTGAGATTATTCATCCGA+AGG | 0.558865 | 1.3:+55445878 | MS.gene88808:CDS |
| ACAACTAGTGGTGCCGTGGA+TGG | 0.559737 | 1.3:-55442609 | None:intergenic |
| CGATTTAGTTCACCCCGGCA+AGG | 0.559852 | 1.3:+55434546 | MS.gene88808:CDS |
| TGTGTTACAGTCGAAGCTAA+AGG | 0.561737 | 1.3:+55439451 | MS.gene88808:intron |
| AGGTGGTACCTGCTTCAGTA+AGG | 0.563007 | 1.3:-55434604 | None:intergenic |
| AGTTGCCAAAGGTGCACCAA+TGG | 0.564389 | 1.3:-55439549 | None:intergenic |
| AACAGCCCAACAGATGTTAG+TGG | 0.564825 | 1.3:+55445160 | MS.gene88808:CDS |
| CACCTCAAAGTTACAACTAG+TGG | 0.566565 | 1.3:-55442621 | None:intergenic |
| TATATGGGAACCAGCAACAT+TGG | 0.568462 | 1.3:+55444526 | MS.gene88808:CDS |
| CAGGTGTCTCTCTCTCGCTA+TGG | 0.572083 | 1.3:-55441781 | None:intergenic |
| CCATGATGTACCCAATCACC+AGG | 0.574672 | 1.3:+55441643 | MS.gene88808:CDS |
| CCCTGTCAGCAACAATGAAG+TGG | 0.574916 | 1.3:+55441736 | MS.gene88808:CDS |
| GGTGCACCAATGGAGTTCAA+TGG | 0.577278 | 1.3:-55439539 | None:intergenic |
| AAAACTAACCTGCAATGCAT+AGG | 0.577316 | 1.3:-55435138 | None:intergenic |
| CATTGTTGCTGACAGGGTCA+CGG | 0.578004 | 1.3:-55441730 | None:intergenic |
| TAACAGATGTTCAGCACCAG+TGG | 0.579121 | 1.3:-55445128 | None:intergenic |
| ACCAGAGTGGCATAGGTGGT+GGG | 0.579460 | 1.3:+55439761 | MS.gene88808:CDS |
| AAGTCCAGGTGCTCCATGGA+AGG | 0.580114 | 1.3:+55434101 | MS.gene88808:CDS |
| CACAGTATCAAATGACACCT+TGG | 0.585021 | 1.3:+55439477 | MS.gene88808:CDS |
| ATTTCAGAATTTGTTATACG+TGG | 0.589942 | 1.3:+55445103 | MS.gene88808:CDS |
| CAACAGTAGTATTATAAGGA+GGG | 0.592804 | 1.3:-55441823 | None:intergenic |
| TCAACAGTAGTATTATAAGG+AGG | 0.593250 | 1.3:-55441824 | None:intergenic |
| TCCCAACCAGTGCCTGCCTG+AGG | 0.593859 | 1.3:-55439724 | None:intergenic |
| AATTAAAGGAACCATCATCC+AGG | 0.596209 | 1.3:-55442792 | None:intergenic |
| CAGGCAGGGGACAGAAAGAG+GGG | 0.596293 | 1.3:+55446395 | MS.gene88808:intron |
| ATTGAGATTATTCATCCGAA+GGG | 0.596981 | 1.3:+55445879 | MS.gene88808:CDS |
| GACTGGGCATCAGGAACAGG+TGG | 0.598965 | 1.3:-55435403 | None:intergenic |
| GACCTTGACATTGCTAACAA+TGG | 0.599564 | 1.3:-55435425 | None:intergenic |
| GGTGCTCCATGGAAGGAACC+AGG | 0.601865 | 1.3:+55434108 | MS.gene88808:CDS |
| TCTAGCGGATTATTCTGCTA+AGG | 0.602226 | 1.3:+55434749 | MS.gene88808:CDS |
| GTCCATTGTTAGCAATGTCA+AGG | 0.604470 | 1.3:+55435423 | MS.gene88808:CDS |
| GGAAGGGAACTTCAGGCATG+TGG | 0.605716 | 1.3:+55442581 | MS.gene88808:CDS |
| GACATTGCTAACAATGGACT+GGG | 0.606388 | 1.3:-55435419 | None:intergenic |
| CAGCTGCCTGTGGATAATGT+TGG | 0.611413 | 1.3:+55434327 | MS.gene88808:CDS |
| AAATGCAGAGCCATATAGAG+AGG | 0.617175 | 1.3:+55444327 | MS.gene88808:CDS |
| CAATGAAGTGGATGATCCAG+AGG | 0.619876 | 1.3:+55441748 | MS.gene88808:CDS |
| AGGGAGTATTCTGCAAGAAG+AGG | 0.620512 | 1.3:-55435376 | None:intergenic |
| GAAGGTTCTTCAAGAACTGG+TGG | 0.621112 | 1.3:-55441878 | None:intergenic |
| AGTTACAACTAGTGGTGCCG+TGG | 0.622502 | 1.3:-55442613 | None:intergenic |
| GAGTGGCCAACATTATCCAC+AGG | 0.622844 | 1.3:-55434333 | None:intergenic |
| ATTGCCATCAAGCCTTGCCG+GGG | 0.623363 | 1.3:-55434558 | None:intergenic |
| TTGCGCTTCCTGTTATCCAG+AGG | 0.625641 | 1.3:-55442981 | None:intergenic |
| TCCAAATGATCAGCTGCCTG+TGG | 0.625830 | 1.3:+55434317 | MS.gene88808:CDS |
| ATAAGACATACATTGGTCGA+TGG | 0.629639 | 1.3:-55444620 | None:intergenic |
| TCGAACTGGTACCTCAGCAT+AGG | 0.629724 | 1.3:+55439668 | MS.gene88808:CDS |
| ATCTCTCCATAGTATTCATG+CGG | 0.631461 | 1.3:-55441686 | None:intergenic |
| CCTGCCTGAGGATCAACAGA+GGG | 0.633473 | 1.3:-55439712 | None:intergenic |
| GATCCATTACCAGCTATAGA+GGG | 0.634668 | 1.3:+55442530 | MS.gene88808:CDS |
| GCATGTGGATACTCCATCCA+CGG | 0.637591 | 1.3:+55442596 | MS.gene88808:CDS |
| TATGGAGAATATGAGGAACT+GGG | 0.638214 | 1.3:-55441851 | None:intergenic |
| ACAGCCCAACAGATGTTAGT+GGG | 0.640263 | 1.3:+55445161 | MS.gene88808:CDS |
| GATAACAAGAAGATCACTTG+TGG | 0.640928 | 1.3:+55443759 | MS.gene88808:CDS |
| GGATGATCCAGAGGGTGATG+GGG | 0.641317 | 1.3:+55441757 | MS.gene88808:CDS |
| TGTCGTAGGCATCTACCAGA+AGG | 0.641674 | 1.3:+55434510 | MS.gene88808:intron |
| AAGCGTACTGAAGTTGCCAA+AGG | 0.655675 | 1.3:-55439560 | None:intergenic |
| AATCACCAGGTAGTTACTCA+GGG | 0.655884 | 1.3:+55441656 | MS.gene88808:CDS |
| TCTGGATAACAGGAAGCGCA+AGG | 0.658265 | 1.3:+55442983 | MS.gene88808:CDS |
| TGTCACCCTGAGTAACTACC+TGG | 0.658789 | 1.3:-55441661 | None:intergenic |
| ATGTTGATGCTGATGACTTG+GGG | 0.666256 | 1.3:+55439794 | MS.gene88808:CDS |
| ATGGTGAAGACAGCTGAGAG+TGG | 0.671201 | 1.3:-55434350 | None:intergenic |
| TCTATTAAGGAAACATCTAG+CGG | 0.673451 | 1.3:+55434734 | MS.gene88808:CDS |
| ATTCTCGATTTAGTTCACCC+CGG | 0.678246 | 1.3:+55434541 | MS.gene88808:CDS |
| ACTTGAGAGTACCTATGCTG+AGG | 0.680645 | 1.3:-55439679 | None:intergenic |
| GGTTACAGTATCAAATGCAG+CGG | 0.682350 | 1.3:+55444563 | MS.gene88808:CDS |
| CAGGCTCACCTGCTTCCAAG+AGG | 0.683191 | 1.3:-55439826 | None:intergenic |
| AATGAAGTGGATGATCCAGA+GGG | 0.696726 | 1.3:+55441749 | MS.gene88808:CDS |
| GCCTGCCTGAGGATCAACAG+AGG | 0.698053 | 1.3:-55439713 | None:intergenic |
| GTATGATAAAGCCTTTGATG+CGG | 0.698087 | 1.3:-55435081 | None:intergenic |
| GCGATGGGTCGCTACCAGAG+TGG | 0.709013 | 1.3:+55439748 | MS.gene88808:CDS |
| TGGTTCATATCTGAATGCCA+AGG | 0.720853 | 1.3:-55439494 | None:intergenic |
| TAATCTCAATGTGAGCACAA+TGG | 0.736755 | 1.3:-55445866 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 55431524 | 55446448 | 55431524 | ID=MS.gene88808 |
| chr1.3 | mRNA | 55431524 | 55446448 | 55431524 | ID=MS.gene88808.t1;Parent=MS.gene88808 |
| chr1.3 | exon | 55431524 | 55431586 | 55431524 | ID=MS.gene88808.t1.exon1;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55431524 | 55431586 | 55431524 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55434072 | 55434171 | 55434072 | ID=MS.gene88808.t1.exon2;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55434072 | 55434171 | 55434072 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55434271 | 55434397 | 55434271 | ID=MS.gene88808.t1.exon3;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55434271 | 55434397 | 55434271 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55434518 | 55434617 | 55434518 | ID=MS.gene88808.t1.exon4;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55434518 | 55434617 | 55434518 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55434693 | 55434770 | 55434693 | ID=MS.gene88808.t1.exon5;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55434693 | 55434770 | 55434693 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55434870 | 55434929 | 55434870 | ID=MS.gene88808.t1.exon6;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55434870 | 55434929 | 55434870 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55435047 | 55435151 | 55435047 | ID=MS.gene88808.t1.exon7;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55435047 | 55435151 | 55435047 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55435334 | 55435444 | 55435334 | ID=MS.gene88808.t1.exon8;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55435334 | 55435444 | 55435334 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55439229 | 55439270 | 55439229 | ID=MS.gene88808.t1.exon9;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55439229 | 55439270 | 55439229 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55439461 | 55439574 | 55439461 | ID=MS.gene88808.t1.exon10;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55439461 | 55439574 | 55439461 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55439655 | 55439839 | 55439655 | ID=MS.gene88808.t1.exon11;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55439655 | 55439839 | 55439655 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55441631 | 55441917 | 55441631 | ID=MS.gene88808.t1.exon12;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55441631 | 55441917 | 55441631 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55442519 | 55442640 | 55442519 | ID=MS.gene88808.t1.exon13;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55442519 | 55442640 | 55442519 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55442781 | 55442823 | 55442781 | ID=MS.gene88808.t1.exon14;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55442781 | 55442823 | 55442781 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55442913 | 55443004 | 55442913 | ID=MS.gene88808.t1.exon15;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55442913 | 55443004 | 55442913 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55443732 | 55443780 | 55443732 | ID=MS.gene88808.t1.exon16;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55443732 | 55443780 | 55443732 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55444321 | 55444391 | 55444321 | ID=MS.gene88808.t1.exon17;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55444321 | 55444391 | 55444321 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55444512 | 55444631 | 55444512 | ID=MS.gene88808.t1.exon18;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55444512 | 55444631 | 55444512 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55445082 | 55445182 | 55445082 | ID=MS.gene88808.t1.exon19;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55445082 | 55445182 | 55445082 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55445855 | 55445900 | 55445855 | ID=MS.gene88808.t1.exon20;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55445855 | 55445900 | 55445855 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| chr1.3 | exon | 55446398 | 55446448 | 55446398 | ID=MS.gene88808.t1.exon21;Parent=MS.gene88808.t1 |
| chr1.3 | CDS | 55446398 | 55446448 | 55446398 | ID=cds.MS.gene88808.t1;Parent=MS.gene88808.t1 |
| Gene Sequence |
| Protein sequence |
