Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060917.t1 | XP_003603321.1 | 100 | 51 | 0 | 0 | 1 | 51 | 1 | 51 | 6.60E-21 | 109 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060917.t1 | Q5SMI4 | 98.0 | 51 | 1 | 0 | 1 | 51 | 1 | 51 | 7.9e-23 | 106.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060917.t1 | G7J9X2 | 100.0 | 51 | 0 | 0 | 1 | 51 | 1 | 51 | 4.7e-21 | 109.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049255 | MS.gene060917 | 0.807426 | 5.08E-50 | -1.69E-46 |
MS.gene049821 | MS.gene060917 | 0.803082 | 4.13E-49 | -1.69E-46 |
MS.gene050277 | MS.gene060917 | 0.807352 | 5.27E-50 | -1.69E-46 |
MS.gene051241 | MS.gene060917 | 0.815802 | 7.67E-52 | -1.69E-46 |
MS.gene051328 | MS.gene060917 | 0.812312 | 4.52E-51 | -1.69E-46 |
MS.gene05134 | MS.gene060917 | 0.82844 | 8.98E-55 | -1.69E-46 |
MS.gene051903 | MS.gene060917 | 0.810842 | 9.43E-51 | -1.69E-46 |
MS.gene052133 | MS.gene060917 | 0.804993 | 1.65E-49 | -1.69E-46 |
MS.gene052947 | MS.gene060917 | 0.870121 | 1.85E-66 | -1.69E-46 |
MS.gene053006 | MS.gene060917 | 0.800105 | 1.68E-48 | -1.69E-46 |
MS.gene055162 | MS.gene060917 | 0.808919 | 2.44E-50 | -1.69E-46 |
MS.gene055555 | MS.gene060917 | 0.827678 | 1.37E-54 | -1.69E-46 |
MS.gene055808 | MS.gene060917 | 0.802693 | 4.97E-49 | -1.69E-46 |
MS.gene056091 | MS.gene060917 | 0.800697 | 1.28E-48 | -1.69E-46 |
MS.gene056215 | MS.gene060917 | 0.824045 | 9.98E-54 | -1.69E-46 |
MS.gene056601 | MS.gene060917 | 0.810387 | 1.18E-50 | -1.69E-46 |
MS.gene056631 | MS.gene060917 | 0.820602 | 6.29E-53 | -1.69E-46 |
MS.gene057694 | MS.gene060917 | 0.83618 | 1.09E-56 | -1.69E-46 |
MS.gene057705 | MS.gene060917 | 0.868973 | 4.38E-66 | -1.69E-46 |
MS.gene06001 | MS.gene060917 | 0.830622 | 2.65E-55 | -1.69E-46 |
MS.gene060429 | MS.gene060917 | 0.851015 | 1.17E-60 | -1.69E-46 |
MS.gene060917 | MS.gene06172 | 0.806028 | 1.00E-49 | -1.69E-46 |
MS.gene060917 | MS.gene061866 | 0.834554 | 2.80E-56 | -1.69E-46 |
MS.gene060917 | MS.gene061869 | 0.842332 | 2.76E-58 | -1.69E-46 |
MS.gene060917 | MS.gene061872 | 0.829041 | 6.43E-55 | -1.69E-46 |
MS.gene060917 | MS.gene061874 | 0.84801 | 8.05E-60 | -1.69E-46 |
MS.gene060917 | MS.gene061900 | 0.817265 | 3.61E-52 | -1.69E-46 |
MS.gene060917 | MS.gene063026 | 0.801103 | 1.05E-48 | -1.69E-46 |
MS.gene060917 | MS.gene063086 | 0.803793 | 2.94E-49 | -1.69E-46 |
MS.gene060917 | MS.gene06371 | 0.816153 | 6.40E-52 | -1.69E-46 |
MS.gene060917 | MS.gene063787 | 0.806805 | 6.88E-50 | -1.69E-46 |
MS.gene060917 | MS.gene06510 | 0.819338 | 1.22E-52 | -1.69E-46 |
MS.gene060917 | MS.gene066105 | 0.850916 | 1.25E-60 | -1.69E-46 |
MS.gene060917 | MS.gene066194 | 0.811913 | 5.52E-51 | -1.69E-46 |
MS.gene060917 | MS.gene066758 | 0.810292 | 1.24E-50 | -1.69E-46 |
MS.gene060917 | MS.gene066996 | 0.831877 | 1.30E-55 | -1.69E-46 |
MS.gene060917 | MS.gene067521 | 0.849859 | 2.47E-60 | -1.69E-46 |
MS.gene060917 | MS.gene068637 | 0.804118 | 2.52E-49 | -1.69E-46 |
MS.gene060917 | MS.gene069206 | 0.827448 | 1.56E-54 | -1.69E-46 |
MS.gene060917 | MS.gene069220 | 0.823812 | 1.13E-53 | -1.69E-46 |
MS.gene060917 | MS.gene069310 | 0.857221 | 1.89E-62 | -1.69E-46 |
MS.gene060917 | MS.gene069313 | 0.83818 | 3.35E-57 | -1.69E-46 |
MS.gene060917 | MS.gene06984 | 0.830578 | 2.71E-55 | -1.69E-46 |
MS.gene060917 | MS.gene06989 | 0.824373 | 8.36E-54 | -1.69E-46 |
MS.gene060917 | MS.gene069962 | 0.801969 | 7.01E-49 | -1.69E-46 |
MS.gene060917 | MS.gene070271 | 0.80343 | 3.50E-49 | -1.69E-46 |
MS.gene060917 | MS.gene07100 | 0.842762 | 2.12E-58 | -1.69E-46 |
MS.gene060917 | MS.gene071173 | 0.801188 | 1.01E-48 | -1.69E-46 |
MS.gene060917 | MS.gene071480 | 0.80562 | 1.22E-49 | -1.69E-46 |
MS.gene060917 | MS.gene071958 | 0.828489 | 8.74E-55 | -1.69E-46 |
MS.gene060917 | MS.gene071960 | 0.863501 | 2.38E-64 | -1.69E-46 |
MS.gene060917 | MS.gene072150 | 0.806751 | 7.07E-50 | -1.69E-46 |
MS.gene060917 | MS.gene07222 | 0.851107 | 1.10E-60 | -1.69E-46 |
MS.gene060917 | MS.gene072493 | 0.821375 | 4.18E-53 | -1.69E-46 |
MS.gene060917 | MS.gene073301 | 0.815043 | 1.13E-51 | -1.69E-46 |
MS.gene060917 | MS.gene073785 | 0.847537 | 1.09E-59 | -1.69E-46 |
MS.gene060917 | MS.gene07388 | 0.813856 | 2.07E-51 | -1.69E-46 |
MS.gene060917 | MS.gene074603 | 0.809794 | 1.59E-50 | -1.69E-46 |
MS.gene060917 | MS.gene074606 | 0.821431 | 4.05E-53 | -1.69E-46 |
MS.gene060917 | MS.gene07719 | 0.832462 | 9.33E-56 | -1.69E-46 |
MS.gene060917 | MS.gene07798 | 0.815949 | 7.11E-52 | -1.69E-46 |
MS.gene060917 | MS.gene08427 | 0.801021 | 1.10E-48 | -1.69E-46 |
MS.gene060917 | MS.gene08428 | 0.831842 | 1.33E-55 | -1.69E-46 |
MS.gene060917 | MS.gene08618 | 0.801429 | 9.04E-49 | -1.69E-46 |
MS.gene060917 | MS.gene09850 | 0.82057 | 6.40E-53 | -1.69E-46 |
MS.gene060917 | MS.gene09873 | 0.826302 | 2.92E-54 | -1.69E-46 |
MS.gene060917 | MS.gene20230 | 0.830775 | 2.43E-55 | -1.69E-46 |
MS.gene060917 | MS.gene20740 | 0.854724 | 1.02E-61 | -1.69E-46 |
MS.gene060917 | MS.gene21783 | 0.800427 | 1.45E-48 | -1.69E-46 |
MS.gene060917 | MS.gene22968 | 0.831001 | 2.14E-55 | -1.69E-46 |
MS.gene060917 | MS.gene22974 | 0.852905 | 3.40E-61 | -1.69E-46 |
MS.gene060917 | MS.gene23058 | 0.833817 | 4.29E-56 | -1.69E-46 |
MS.gene060917 | MS.gene23059 | 0.841245 | 5.34E-58 | -1.69E-46 |
MS.gene060917 | MS.gene23567 | 0.841574 | 4.38E-58 | -1.69E-46 |
MS.gene060917 | MS.gene23954 | 0.813514 | 2.46E-51 | -1.69E-46 |
MS.gene060917 | MS.gene24260 | 0.833331 | 5.67E-56 | -1.69E-46 |
MS.gene060917 | MS.gene24610 | 0.801944 | 7.09E-49 | -1.69E-46 |
MS.gene060917 | MS.gene24623 | 0.80522 | 1.48E-49 | -1.69E-46 |
MS.gene060917 | MS.gene24626 | 0.806145 | 9.48E-50 | -1.69E-46 |
MS.gene060917 | MS.gene24628 | 0.820328 | 7.27E-53 | -1.69E-46 |
MS.gene060917 | MS.gene24692 | 0.807267 | 5.50E-50 | -1.69E-46 |
MS.gene060917 | MS.gene24846 | 0.808558 | 2.92E-50 | -1.69E-46 |
MS.gene060917 | MS.gene24847 | 0.801165 | 1.02E-48 | -1.69E-46 |
MS.gene060917 | MS.gene24923 | 0.820691 | 6.00E-53 | -1.69E-46 |
MS.gene060917 | MS.gene24930 | 0.862122 | 6.34E-64 | -1.69E-46 |
MS.gene060917 | MS.gene26979 | 0.832628 | 8.48E-56 | -1.69E-46 |
MS.gene060917 | MS.gene27668 | 0.823244 | 1.54E-53 | -1.69E-46 |
MS.gene060917 | MS.gene27991 | 0.802656 | 5.06E-49 | -1.69E-46 |
MS.gene060917 | MS.gene28387 | 0.808548 | 2.93E-50 | -1.69E-46 |
MS.gene060917 | MS.gene30920 | 0.807848 | 4.14E-50 | -1.69E-46 |
MS.gene060917 | MS.gene31405 | 0.804256 | 2.36E-49 | -1.69E-46 |
MS.gene060917 | MS.gene32134 | 0.804331 | 2.27E-49 | -1.69E-46 |
MS.gene060917 | MS.gene32419 | 0.836389 | 9.63E-57 | -1.69E-46 |
MS.gene060917 | MS.gene33377 | 0.811696 | 6.15E-51 | -1.69E-46 |
MS.gene060917 | MS.gene33664 | -0.808082 | 3.69E-50 | -1.69E-46 |
MS.gene060917 | MS.gene33879 | 0.814576 | 1.44E-51 | -1.69E-46 |
MS.gene060917 | MS.gene35048 | 0.809577 | 1.77E-50 | -1.69E-46 |
MS.gene060917 | MS.gene35135 | 0.854699 | 1.03E-61 | -1.69E-46 |
MS.gene060917 | MS.gene35214 | 0.834497 | 2.90E-56 | -1.69E-46 |
MS.gene060917 | MS.gene36468 | 0.823428 | 1.39E-53 | -1.69E-46 |
MS.gene060917 | MS.gene36496 | 0.801449 | 8.96E-49 | -1.69E-46 |
MS.gene060917 | MS.gene36568 | 0.823619 | 1.26E-53 | -1.69E-46 |
MS.gene060917 | MS.gene37027 | 0.828439 | 8.98E-55 | -1.69E-46 |
MS.gene060917 | MS.gene37029 | 0.800711 | 1.27E-48 | -1.69E-46 |
MS.gene060917 | MS.gene38256 | 0.824234 | 9.01E-54 | -1.69E-46 |
MS.gene060917 | MS.gene39207 | 0.834356 | 3.14E-56 | -1.69E-46 |
MS.gene060917 | MS.gene40022 | 0.806924 | 6.50E-50 | -1.69E-46 |
MS.gene060917 | MS.gene40595 | 0.862253 | 5.78E-64 | -1.69E-46 |
MS.gene060917 | MS.gene40648 | 0.819359 | 1.21E-52 | -1.69E-46 |
MS.gene060917 | MS.gene40919 | 0.818346 | 2.06E-52 | -1.69E-46 |
MS.gene060917 | MS.gene43992 | 0.862738 | 4.10E-64 | -1.69E-46 |
MS.gene060917 | MS.gene44023 | 0.807168 | 5.77E-50 | -1.69E-46 |
MS.gene060917 | MS.gene44141 | 0.846651 | 1.90E-59 | -1.69E-46 |
MS.gene060917 | MS.gene44240 | 0.805327 | 1.41E-49 | -1.69E-46 |
MS.gene060917 | MS.gene44256 | 0.80296 | 4.38E-49 | -1.69E-46 |
MS.gene060917 | MS.gene46252 | 0.802288 | 6.02E-49 | -1.69E-46 |
MS.gene060917 | MS.gene50775 | 0.806177 | 9.34E-50 | -1.69E-46 |
MS.gene060917 | MS.gene52404 | 0.825539 | 4.44E-54 | -1.69E-46 |
MS.gene060917 | MS.gene53579 | 0.81952 | 1.11E-52 | -1.69E-46 |
MS.gene060917 | MS.gene54282 | 0.87038 | 1.52E-66 | -1.69E-46 |
MS.gene060917 | MS.gene54919 | 0.828886 | 7.01E-55 | -1.69E-46 |
MS.gene060917 | MS.gene55732 | 0.836696 | 8.04E-57 | -1.69E-46 |
MS.gene060917 | MS.gene55887 | 0.823585 | 1.28E-53 | -1.69E-46 |
MS.gene060917 | MS.gene56067 | 0.820195 | 7.80E-53 | -1.69E-46 |
MS.gene060917 | MS.gene56293 | 0.806467 | 8.11E-50 | -1.69E-46 |
MS.gene060917 | MS.gene57991 | 0.81791 | 2.58E-52 | -1.69E-46 |
MS.gene060917 | MS.gene58719 | 0.839284 | 1.74E-57 | -1.69E-46 |
MS.gene060917 | MS.gene59910 | 0.811464 | 6.91E-51 | -1.69E-46 |
MS.gene060917 | MS.gene60093 | 0.808251 | 3.39E-50 | -1.69E-46 |
MS.gene060917 | MS.gene60261 | 0.81126 | 7.65E-51 | -1.69E-46 |
MS.gene060917 | MS.gene60717 | 0.870578 | 1.31E-66 | -1.69E-46 |
MS.gene060917 | MS.gene61543 | 0.824997 | 5.96E-54 | -1.69E-46 |
MS.gene060917 | MS.gene61679 | 0.806022 | 1.01E-49 | -1.69E-46 |
MS.gene060917 | MS.gene62834 | 0.810489 | 1.12E-50 | -1.69E-46 |
MS.gene060917 | MS.gene64071 | 0.81355 | 2.42E-51 | -1.69E-46 |
MS.gene060917 | MS.gene64517 | 0.825715 | 4.03E-54 | -1.69E-46 |
MS.gene060917 | MS.gene64650 | 0.836979 | 6.81E-57 | -1.69E-46 |
MS.gene060917 | MS.gene66089 | 0.802352 | 5.84E-49 | -1.69E-46 |
MS.gene060917 | MS.gene66280 | 0.833942 | 3.99E-56 | -1.69E-46 |
MS.gene060917 | MS.gene67884 | 0.810159 | 1.32E-50 | -1.69E-46 |
MS.gene060917 | MS.gene68215 | 0.824381 | 8.32E-54 | -1.69E-46 |
MS.gene060917 | MS.gene69546 | 0.821486 | 3.94E-53 | -1.69E-46 |
MS.gene060917 | MS.gene69947 | 0.855143 | 7.69E-62 | -1.69E-46 |
MS.gene060917 | MS.gene70398 | 0.812619 | 3.87E-51 | -1.69E-46 |
MS.gene060917 | MS.gene71215 | 0.842861 | 2.00E-58 | -1.69E-46 |
MS.gene060917 | MS.gene71308 | 0.811769 | 5.93E-51 | -1.69E-46 |
MS.gene060917 | MS.gene71949 | 0.874183 | 8.24E-68 | -1.69E-46 |
MS.gene060917 | MS.gene72285 | 0.800003 | 1.77E-48 | -1.69E-46 |
MS.gene060917 | MS.gene72413 | 0.840787 | 7.05E-58 | -1.69E-46 |
MS.gene060917 | MS.gene72612 | 0.814745 | 1.32E-51 | -1.69E-46 |
MS.gene060917 | MS.gene72904 | 0.828356 | 9.41E-55 | -1.69E-46 |
MS.gene060917 | MS.gene73234 | 0.802668 | 5.03E-49 | -1.69E-46 |
MS.gene060917 | MS.gene73243 | 0.857875 | 1.21E-62 | -1.69E-46 |
MS.gene060917 | MS.gene73364 | 0.808572 | 2.90E-50 | -1.69E-46 |
MS.gene060917 | MS.gene74989 | 0.829564 | 4.80E-55 | -1.69E-46 |
MS.gene060917 | MS.gene75003 | 0.818679 | 1.73E-52 | -1.69E-46 |
MS.gene060917 | MS.gene75625 | 0.840351 | 9.16E-58 | -1.69E-46 |
MS.gene060917 | MS.gene76305 | -0.806658 | 7.39E-50 | -1.69E-46 |
MS.gene060917 | MS.gene76576 | 0.813708 | 2.23E-51 | -1.69E-46 |
MS.gene060917 | MS.gene78578 | 0.819317 | 1.24E-52 | -1.69E-46 |
MS.gene060917 | MS.gene79654 | 0.800783 | 1.23E-48 | -1.69E-46 |
MS.gene060917 | MS.gene79792 | 0.81369 | 2.25E-51 | -1.69E-46 |
MS.gene060917 | MS.gene81280 | 0.811427 | 7.04E-51 | -1.69E-46 |
MS.gene060917 | MS.gene81493 | 0.846111 | 2.67E-59 | -1.69E-46 |
MS.gene060917 | MS.gene81900 | 0.835859 | 1.31E-56 | -1.69E-46 |
MS.gene060917 | MS.gene83217 | 0.806683 | 7.30E-50 | -1.69E-46 |
MS.gene060917 | MS.gene83218 | 0.82961 | 4.67E-55 | -1.69E-46 |
MS.gene060917 | MS.gene83326 | 0.804438 | 2.16E-49 | -1.69E-46 |
MS.gene060917 | MS.gene83830 | 0.81811 | 2.33E-52 | -1.69E-46 |
MS.gene060917 | MS.gene83961 | 0.835404 | 1.71E-56 | -1.69E-46 |
MS.gene060917 | MS.gene84455 | 0.847685 | 9.89E-60 | -1.69E-46 |
MS.gene060917 | MS.gene86265 | 0.838527 | 2.73E-57 | -1.69E-46 |
MS.gene060917 | MS.gene86392 | 0.804688 | 1.92E-49 | -1.69E-46 |
MS.gene060917 | MS.gene87285 | 0.848411 | 6.23E-60 | -1.69E-46 |
MS.gene060917 | MS.gene87795 | 0.812394 | 4.33E-51 | -1.69E-46 |
MS.gene060917 | MS.gene88145 | 0.810376 | 1.19E-50 | -1.69E-46 |
MS.gene060917 | MS.gene88371 | 0.816358 | 5.76E-52 | -1.69E-46 |
MS.gene060917 | MS.gene88680 | 0.815851 | 7.48E-52 | -1.69E-46 |
MS.gene060917 | MS.gene88681 | 0.808166 | 3.54E-50 | -1.69E-46 |
MS.gene060917 | MS.gene88808 | -0.824356 | 8.44E-54 | -1.69E-46 |
MS.gene060917 | MS.gene89027 | 0.810203 | 1.30E-50 | -1.69E-46 |
MS.gene060917 | MS.gene89036 | 0.80515 | 1.53E-49 | -1.69E-46 |
MS.gene060917 | MS.gene89562 | 0.869947 | 2.11E-66 | -1.69E-46 |
MS.gene060917 | MS.gene89721 | 0.842054 | 3.27E-58 | -1.69E-46 |
MS.gene060917 | MS.gene90981 | 0.859337 | 4.43E-63 | -1.69E-46 |
MS.gene060917 | MS.gene91623 | 0.810594 | 1.07E-50 | -1.69E-46 |
MS.gene060917 | MS.gene91652 | 0.817935 | 2.55E-52 | -1.69E-46 |
MS.gene060917 | MS.gene92188 | 0.811803 | 5.83E-51 | -1.69E-46 |
MS.gene060917 | MS.gene96322 | 0.83292 | 7.18E-56 | -1.69E-46 |
MS.gene060917 | MS.gene96338 | 0.814875 | 1.23E-51 | -1.69E-46 |
MS.gene060917 | MS.gene97237 | 0.805584 | 1.24E-49 | -1.69E-46 |
MS.gene060917 | MS.gene98152 | -0.810861 | 9.34E-51 | -1.69E-46 |
MS.gene060917 | MS.gene99657 | 0.840747 | 7.22E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene33166 | MS.gene060917 | PPI |
MS.gene016022 | MS.gene060917 | PPI |
MS.gene61173 | MS.gene060917 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060917.t1 | MTR_3g106310 | 100.000 | 51 | 0 | 0 | 1 | 51 | 1 | 51 | 3.35e-32 | 105 |
MS.gene060917.t1 | MTR_1g013070 | 100.000 | 51 | 0 | 0 | 1 | 51 | 1 | 51 | 3.35e-32 | 105 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060917.t1 | AT4G31985 | 90.196 | 51 | 5 | 0 | 1 | 51 | 1 | 51 | 1.80e-29 | 98.2 |
MS.gene060917.t1 | AT3G02190 | 88.235 | 51 | 6 | 0 | 1 | 51 | 1 | 51 | 4.22e-28 | 94.7 |
MS.gene060917.t1 | AT2G25210 | 90.909 | 44 | 4 | 0 | 8 | 51 | 1 | 44 | 6.32e-24 | 84.0 |
Find 14 sgRNAs with CRISPR-Local
Find 19 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTCTCATACGGATCCAATA+AGG | 0.402869 | 1.2:+8602120 | None:intergenic |
AGAACAGACCCATCCCTTAT+TGG | 0.418161 | 1.2:-8602134 | MS.gene060917:CDS |
CACTGGCGTCGTACCAAGCT+TGG | 0.445699 | 1.2:-8601967 | MS.gene060917:CDS |
TTCTCATACGGATCCAATAA+GGG | 0.468482 | 1.2:+8602121 | None:intergenic |
AATTAACCTGATGGTGTTGT+CGG | 0.494295 | 1.2:+8602098 | None:intergenic |
TGAGAACCGACAACACCATC+AGG | 0.505441 | 1.2:-8602104 | MS.gene060917:intron |
CGTACCAAGCTTGGATTCTG+AGG | 0.522895 | 1.2:-8601958 | None:intergenic |
TGGTGTTGTCGGTTCTCATA+CGG | 0.540409 | 1.2:+8602109 | None:intergenic |
ACAATGCTAAGCGTCGTCAC+TGG | 0.548403 | 1.2:-8601984 | MS.gene060917:CDS |
AAAACCTCAGAATCCAAGCT+TGG | 0.552557 | 1.2:+8601954 | None:intergenic |
AGAAGCTCGCGAAGAAGATG+AGG | 0.578712 | 1.2:-8602158 | MS.gene060917:CDS |
CATACGGATCCAATAAGGGA+TGG | 0.584103 | 1.2:+8602125 | None:intergenic |
ATGACGAATGTCTTGTGTGA+AGG | 0.588940 | 1.2:+8602186 | None:intergenic |
ATACGGATCCAATAAGGGAT+GGG | 0.595390 | 1.2:+8602126 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGTTATTTCATTTGATTTT+AGG | - | chr1.2:8602241-8602260 | MS.gene060917:intron | 15.0% |
! | ATAGATAGAAATTAACCTGA+TGG | + | chr1.2:8602163-8602182 | None:intergenic | 25.0% |
AGAATAGTGAAATTAGGAGT+GGG | + | chr1.2:8601999-8602018 | None:intergenic | 30.0% | |
GAATCGAGAATAGTGAAATT+AGG | + | chr1.2:8602005-8602024 | None:intergenic | 30.0% | |
GAGAATAGTGAAATTAGGAG+TGG | + | chr1.2:8602000-8602019 | None:intergenic | 35.0% | |
TGAAATTAGGAGTGGGAATT+TGG | + | chr1.2:8601992-8602011 | None:intergenic | 35.0% | |
TTAACAGTACAACGTTGTTG+TGG | + | chr1.2:8602191-8602210 | None:intergenic | 35.0% | |
TTCTCATACGGATCCAATAA+GGG | + | chr1.2:8602131-8602150 | None:intergenic | 35.0% | |
!! | AATTAACCTGATGGTGTTGT+CGG | + | chr1.2:8602154-8602173 | None:intergenic | 35.0% |
ATACGGATCCAATAAGGGAT+GGG | + | chr1.2:8602126-8602145 | None:intergenic | 40.0% | |
ATGACGAATGTCTTGTGTGA+AGG | + | chr1.2:8602066-8602085 | None:intergenic | 40.0% | |
GTTCTCATACGGATCCAATA+AGG | + | chr1.2:8602132-8602151 | None:intergenic | 40.0% | |
AGAACAGACCCATCCCTTAT+TGG | - | chr1.2:8602115-8602134 | MS.gene060917:CDS | 45.0% | |
CATACGGATCCAATAAGGGA+TGG | + | chr1.2:8602127-8602146 | None:intergenic | 45.0% | |
!! | TGGTGTTGTCGGTTCTCATA+CGG | + | chr1.2:8602143-8602162 | None:intergenic | 45.0% |
AGAAGCTCGCGAAGAAGATG+AGG | - | chr1.2:8602091-8602110 | MS.gene060917:intron | 50.0% | |
TGAGAACCGACAACACCATC+AGG | - | chr1.2:8602145-8602164 | MS.gene060917:CDS | 50.0% | |
! | ACAATGCTAAGCGTCGTCAC+TGG | - | chr1.2:8602265-8602284 | MS.gene060917:intron | 50.0% |
CACTGGCGTCGTACCAAGCT+TGG | - | chr1.2:8602282-8602301 | MS.gene060917:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 8601960 | 8602311 | 8601960 | ID=MS.gene060917 |
chr1.2 | mRNA | 8601960 | 8602311 | 8601960 | ID=MS.gene060917.t1;Parent=MS.gene060917 |
chr1.2 | exon | 8602309 | 8602311 | 8602309 | ID=MS.gene060917.t1.exon1;Parent=MS.gene060917.t1 |
chr1.2 | CDS | 8602309 | 8602311 | 8602309 | ID=cds.MS.gene060917.t1;Parent=MS.gene060917.t1 |
chr1.2 | exon | 8602105 | 8602208 | 8602105 | ID=MS.gene060917.t1.exon2;Parent=MS.gene060917.t1 |
chr1.2 | CDS | 8602105 | 8602208 | 8602105 | ID=cds.MS.gene060917.t1;Parent=MS.gene060917.t1 |
chr1.2 | exon | 8601960 | 8602008 | 8601960 | ID=MS.gene060917.t1.exon3;Parent=MS.gene060917.t1 |
chr1.2 | CDS | 8601960 | 8602008 | 8601960 | ID=cds.MS.gene060917.t1;Parent=MS.gene060917.t1 |
Gene Sequence |
Protein sequence |