Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89854.t1 | XP_003611934.1 | 98.8 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 1.20E-155 | 559.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89854.t1 | Q94A43 | 64.1 | 301 | 82 | 12 | 29 | 323 | 36 | 316 | 1.2e-76 | 288.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89854.t1 | G7KC60 | 98.8 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 8.4e-156 | 559.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene89854.t1 | TF | BES1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049134 | MS.gene89854 | 0.8136 | 2.36E-51 | -1.69E-46 |
| MS.gene049149 | MS.gene89854 | -0.801711 | 7.91E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene89854 | 0.820798 | 5.67E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene89854 | 0.820807 | 5.64E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene89854 | -0.826779 | 2.25E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene89854 | -0.83514 | 2.00E-56 | -1.69E-46 |
| MS.gene051983 | MS.gene89854 | -0.827967 | 1.17E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene89854 | 0.843188 | 1.63E-58 | -1.69E-46 |
| MS.gene052077 | MS.gene89854 | -0.829491 | 5.00E-55 | -1.69E-46 |
| MS.gene054183 | MS.gene89854 | -0.845427 | 4.09E-59 | -1.69E-46 |
| MS.gene056899 | MS.gene89854 | 0.822173 | 2.73E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene89854 | -0.825823 | 3.80E-54 | -1.69E-46 |
| MS.gene057244 | MS.gene89854 | 0.813389 | 2.62E-51 | -1.69E-46 |
| MS.gene059609 | MS.gene89854 | -0.819032 | 1.44E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene89854 | -0.818314 | 2.09E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene89854 | 0.841489 | 4.61E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89854.t1 | MTR_5g019550 | 98.762 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 0.0 | 650 |
| MS.gene89854.t1 | MTR_5g019550 | 98.326 | 239 | 4 | 0 | 85 | 323 | 1 | 239 | 2.45e-170 | 472 |
| MS.gene89854.t1 | MTR_3g111680 | 54.242 | 330 | 119 | 8 | 2 | 323 | 8 | 313 | 1.63e-80 | 247 |
| MS.gene89854.t1 | MTR_1g021990 | 37.855 | 317 | 112 | 8 | 9 | 323 | 14 | 247 | 3.77e-49 | 164 |
| MS.gene89854.t1 | MTR_2g075410 | 43.305 | 351 | 133 | 12 | 6 | 322 | 3 | 321 | 1.53e-36 | 134 |
| MS.gene89854.t1 | MTR_2g075400 | 42.197 | 346 | 137 | 12 | 6 | 322 | 3 | 314 | 1.09e-32 | 127 |
| MS.gene89854.t1 | MTR_5g026210 | 60.714 | 56 | 22 | 0 | 20 | 75 | 61 | 116 | 1.90e-14 | 73.9 |
| MS.gene89854.t1 | MTR_5g026210 | 60.714 | 56 | 22 | 0 | 20 | 75 | 61 | 116 | 1.95e-14 | 74.3 |
| MS.gene89854.t1 | MTR_5g026210 | 60.714 | 56 | 22 | 0 | 20 | 75 | 61 | 116 | 2.16e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89854.t1 | AT1G75080 | 54.438 | 338 | 105 | 12 | 9 | 323 | 23 | 334 | 1.93e-93 | 281 |
| MS.gene89854.t1 | AT1G75080 | 54.438 | 338 | 105 | 12 | 9 | 323 | 23 | 334 | 1.93e-93 | 281 |
| MS.gene89854.t1 | AT1G19350 | 54.438 | 338 | 105 | 12 | 9 | 323 | 44 | 355 | 1.10e-91 | 277 |
| MS.gene89854.t1 | AT1G19350 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.24e-91 | 276 |
| MS.gene89854.t1 | AT1G19350 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.24e-91 | 276 |
| MS.gene89854.t1 | AT1G19350 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.24e-91 | 276 |
| MS.gene89854.t1 | AT1G19350 | 54.438 | 338 | 105 | 12 | 9 | 323 | 22 | 333 | 1.24e-91 | 276 |
| MS.gene89854.t1 | AT3G50750 | 51.863 | 322 | 95 | 8 | 2 | 319 | 4 | 269 | 1.31e-76 | 236 |
| MS.gene89854.t1 | AT4G36780 | 71.859 | 199 | 49 | 5 | 9 | 203 | 16 | 211 | 1.68e-61 | 197 |
| MS.gene89854.t1 | AT1G78700 | 41.193 | 352 | 135 | 13 | 6 | 319 | 3 | 320 | 1.51e-44 | 155 |
| MS.gene89854.t1 | AT4G18890 | 40.625 | 320 | 141 | 11 | 6 | 319 | 3 | 279 | 9.82e-33 | 123 |
| MS.gene89854.t1 | AT2G45880 | 38.686 | 137 | 75 | 3 | 3 | 136 | 63 | 193 | 7.28e-15 | 75.9 |
| MS.gene89854.t1 | AT5G45300 | 52.113 | 71 | 31 | 1 | 20 | 90 | 111 | 178 | 3.55e-14 | 73.6 |
| MS.gene89854.t1 | AT5G45300 | 52.113 | 71 | 31 | 1 | 20 | 90 | 97 | 164 | 3.65e-14 | 73.6 |
| MS.gene89854.t1 | AT5G45300 | 55.932 | 59 | 26 | 0 | 20 | 78 | 97 | 155 | 1.36e-13 | 72.0 |
Find 109 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTGCTAAGATCTATTC+AGG | 0.302180 | 5.3:+11154064 | MS.gene89854:CDS |
| TGGGGAGTGATCTGCATTGC+TGG | 0.307829 | 5.3:-11155473 | None:intergenic |
| GAAGAAAGAGGTGGCGTAAC+AGG | 0.321873 | 5.3:-11155197 | None:intergenic |
| GCATCTGACTCATCGCATTC+TGG | 0.328895 | 5.3:-11155359 | None:intergenic |
| GGAGTTCCTCCCATTTCATT+TGG | 0.346161 | 5.3:-11154954 | None:intergenic |
| GTGGCGAAACGTGGAGTTAA+AGG | 0.352130 | 5.3:-11155270 | None:intergenic |
| GAGACCATTACCAAATGAAA+TGG | 0.372705 | 5.3:+11154944 | MS.gene89854:CDS |
| TTGGAGCTTACTCTAGGGTT+TGG | 0.376143 | 5.3:+11155650 | MS.gene89854:CDS |
| TCATTATTATCACAGTGTTT+AGG | 0.379828 | 5.3:-11154115 | None:intergenic |
| GAACAAGCACTCATATTTGT+TGG | 0.400165 | 5.3:-11154975 | None:intergenic |
| CCTCCCATTTCATTTGGTAA+TGG | 0.409966 | 5.3:-11154948 | None:intergenic |
| AACGAAGAAGACTGTGGACT+TGG | 0.429225 | 5.3:-11155032 | None:intergenic |
| CTCTTTGTTCTGAAGCTGGT+TGG | 0.433313 | 5.3:+11154149 | MS.gene89854:CDS |
| CTAAGGGGTGGAAGATTTGT+TGG | 0.437346 | 5.3:-11155158 | None:intergenic |
| TTACGTCGCGAAGGGCTTGA+TGG | 0.441756 | 5.3:-11155314 | None:intergenic |
| ATGACCGGCGGTGGATCCTC+CGG | 0.444774 | 5.3:+11153980 | MS.gene89854:CDS |
| AAAGCTCTTTGTTCTGAAGC+TGG | 0.450319 | 5.3:+11154145 | MS.gene89854:CDS |
| GTTTCATAAGATTAAAAGTA+GGG | 0.465742 | 5.3:-11155451 | None:intergenic |
| GAGAATTCATGAGGTAGGAA+TGG | 0.471286 | 5.3:+11155622 | MS.gene89854:CDS |
| GAATGGTAGGAGAAAGGAAG+AGG | 0.471644 | 5.3:-11155114 | None:intergenic |
| CTCGTAGGGTATGATGGTAT+TGG | 0.473170 | 5.3:-11155062 | None:intergenic |
| TGGTGCAGAGGTAGCGAAAA+GGG | 0.473562 | 5.3:-11155294 | None:intergenic |
| GGTGAGAGAATTCATGAGGT+AGG | 0.475725 | 5.3:+11155617 | MS.gene89854:CDS |
| GGAAGGAGGAGCTGCACCAT+GGG | 0.477201 | 5.3:-11155429 | None:intergenic |
| CTCTTCGCCGGAACGATGAC+CGG | 0.477263 | 5.3:+11153965 | None:intergenic |
| CAACAAATCTTCCACCCCTT+AGG | 0.481611 | 5.3:+11155159 | MS.gene89854:CDS |
| TAAGGGGTGGAAGATTTGTT+GGG | 0.482571 | 5.3:-11155157 | None:intergenic |
| GAAGAGTTGGAGCTTACTCT+AGG | 0.484349 | 5.3:+11155644 | MS.gene89854:CDS |
| AATGAGGAAGATTGTGGACT+TGG | 0.485039 | 5.3:-11155008 | None:intergenic |
| GTATCATATCCATCGAACTC+TGG | 0.485353 | 5.3:-11155493 | None:intergenic |
| TATCATATCCATCGAACTCT+GGG | 0.486116 | 5.3:-11155492 | None:intergenic |
| CGCATTCTGGAATGGTGGAA+GGG | 0.492428 | 5.3:-11155346 | None:intergenic |
| CGATGAGTCAGATGCTTCTA+CGG | 0.496132 | 5.3:+11155367 | MS.gene89854:CDS |
| GCCGGAACGATGACCGGCGG+TGG | 0.500980 | 5.3:+11153971 | None:intergenic |
| GGGTATGATGGTATTGGACT+CGG | 0.506930 | 5.3:-11155056 | None:intergenic |
| TCAGCTACTGAGAGAGGTAG+AGG | 0.507163 | 5.3:+11155548 | MS.gene89854:CDS |
| GAGCACTGTTGGAAATCCTA+AGG | 0.507516 | 5.3:-11155175 | None:intergenic |
| GAACTTCTCGGAGAAGAAAG+AGG | 0.507602 | 5.3:-11155209 | None:intergenic |
| GTTAAAGGAAGCATTACAAA+GGG | 0.511164 | 5.3:-11155255 | None:intergenic |
| GAAGTTATGTTGCGGATGAA+TGG | 0.514169 | 5.3:-11155131 | None:intergenic |
| AGACCATTACCAAATGAAAT+GGG | 0.515078 | 5.3:+11154945 | MS.gene89854:CDS |
| AATGGTAGGAGAAAGGAAGA+GGG | 0.515787 | 5.3:-11155113 | None:intergenic |
| GAAGCCATGCAATGGAGTGC+AGG | 0.519451 | 5.3:+11155524 | MS.gene89854:CDS |
| TTTCCATGTTGGTAATCTCC+CGG | 0.520653 | 5.3:-11153999 | None:intergenic |
| CTTCTACGGTGGACTCTGGT+AGG | 0.522842 | 5.3:+11155381 | MS.gene89854:CDS |
| GCGGATGAATGGTAGGAGAA+AGG | 0.522930 | 5.3:-11155120 | None:intergenic |
| ATGGTGCAGAGGTAGCGAAA+AGG | 0.528695 | 5.3:-11155295 | None:intergenic |
| TGAGGTAGGAATGGAAGAGT+TGG | 0.534793 | 5.3:+11155631 | MS.gene89854:CDS |
| TGACCGGCGGTGGATCCTCC+GGG | 0.535108 | 5.3:+11153981 | MS.gene89854:CDS |
| GGTAAGTGGTTACGTCGCGA+AGG | 0.535768 | 5.3:-11155323 | None:intergenic |
| TGACTCATCGCATTCTGGAA+TGG | 0.535852 | 5.3:-11155354 | None:intergenic |
| GTTGGACTCGTAGGGTATGA+TGG | 0.536021 | 5.3:-11155068 | None:intergenic |
| TCGCATTCTGGAATGGTGGA+AGG | 0.536086 | 5.3:-11155347 | None:intergenic |
| GGTTGGATCGTTGAAGAAGA+TGG | 0.537404 | 5.3:+11154166 | MS.gene89854:CDS |
| AGACTGTGGACTTGGGAATG+AGG | 0.539676 | 5.3:-11155024 | None:intergenic |
| GCATTCTGGAATGGTGGAAG+GGG | 0.540873 | 5.3:-11155345 | None:intergenic |
| CTACGGTGGACTCTGGTAGG+TGG | 0.546694 | 5.3:+11155384 | MS.gene89854:CDS |
| ATAAGATTAAAAGTAGGGGA+AGG | 0.548784 | 5.3:-11155446 | None:intergenic |
| TGGCGTAACAGGAGCACTGT+TGG | 0.550863 | 5.3:-11155186 | None:intergenic |
| ACGAGTCCAACTCGCATGGA+TGG | 0.553802 | 5.3:+11155080 | MS.gene89854:CDS |
| ATGGCAGAGTCGTGAAGCCG+TGG | 0.556658 | 5.3:+11155591 | MS.gene89854:CDS |
| TACGGTGGACTCTGGTAGGT+GGG | 0.563236 | 5.3:+11155385 | MS.gene89854:CDS |
| GGTTTCATAAGATTAAAAGT+AGG | 0.565689 | 5.3:-11155452 | None:intergenic |
| AAGAGTTGGAGCTTACTCTA+GGG | 0.569146 | 5.3:+11155645 | MS.gene89854:CDS |
| GGGAAGGAGGAGCTGCACCA+TGG | 0.569302 | 5.3:-11155430 | None:intergenic |
| TATTCAGGTTTACGAGCTCA+AGG | 0.569731 | 5.3:+11154079 | MS.gene89854:CDS |
| TGAATTCTCTCACCTTCCCA+CGG | 0.573723 | 5.3:-11155608 | None:intergenic |
| GATCACTCCCCAGAGTTCGA+TGG | 0.577805 | 5.3:+11155484 | MS.gene89854:CDS |
| CCCTACGAGTCCAACTCGCA+TGG | 0.578171 | 5.3:+11155076 | MS.gene89854:CDS |
| TTATGTTGCGGATGAATGGT+AGG | 0.578326 | 5.3:-11155127 | None:intergenic |
| GATGCTTCTACGGTGGACTC+TGG | 0.578522 | 5.3:+11155377 | MS.gene89854:CDS |
| GTAAGTGGTTACGTCGCGAA+GGG | 0.578993 | 5.3:-11155322 | None:intergenic |
| AGAGTCGTGAAGCCGTGGGA+AGG | 0.580925 | 5.3:+11155596 | MS.gene89854:CDS |
| GTAATTCCATCCATGCGAGT+TGG | 0.581360 | 5.3:-11155086 | None:intergenic |
| ACGAAGAAGACTGTGGACTT+GGG | 0.581874 | 5.3:-11155031 | None:intergenic |
| CTCATCGCATTCTGGAATGG+TGG | 0.583351 | 5.3:-11155351 | None:intergenic |
| AGATTAAAAGTAGGGGAAGG+AGG | 0.584415 | 5.3:-11155443 | None:intergenic |
| AGCACTGTTGGAAATCCTAA+GGG | 0.585276 | 5.3:-11155174 | None:intergenic |
| CCTCCGGGAGATTACCAACA+TGG | 0.594081 | 5.3:+11153996 | MS.gene89854:CDS |
| GGTATGATGGTATTGGACTC+GGG | 0.595404 | 5.3:-11155055 | None:intergenic |
| TCCATGCGAGTTGGACTCGT+AGG | 0.595405 | 5.3:-11155077 | None:intergenic |
| TTTCAGACAACAACTGCCCA+TGG | 0.605613 | 5.3:+11155413 | MS.gene89854:CDS |
| GTATGAATGAAGCCATGCAA+TGG | 0.607575 | 5.3:+11155516 | MS.gene89854:CDS |
| TGAACCTGCACTCCATTGCA+TGG | 0.609662 | 5.3:-11155528 | None:intergenic |
| ATGGTAGGAGAAAGGAAGAG+GGG | 0.614566 | 5.3:-11155112 | None:intergenic |
| CCATGCGAGTTGGACTCGTA+GGG | 0.617530 | 5.3:-11155076 | None:intergenic |
| GTGCAGAGGTAGCGAAAAGG+GGG | 0.619204 | 5.3:-11155292 | None:intergenic |
| CTTGGGAATGAGGAAGATTG+TGG | 0.619428 | 5.3:-11155014 | None:intergenic |
| GCAGGTTCAGCTACTGAGAG+AGG | 0.625141 | 5.3:+11155542 | MS.gene89854:CDS |
| CATTCTGGAATGGTGGAAGG+GGG | 0.627664 | 5.3:-11155344 | None:intergenic |
| AGATGGTACTACTTATCGAA+AGG | 0.630271 | 5.3:+11154183 | MS.gene89854:CDS |
| TTGGGATTGAAGTTATGTTG+CGG | 0.631769 | 5.3:-11155139 | None:intergenic |
| AGTTAAAGGAAGCATTACAA+AGG | 0.631880 | 5.3:-11155256 | None:intergenic |
| GGTGCAGAGGTAGCGAAAAG+GGG | 0.633761 | 5.3:-11155293 | None:intergenic |
| CTGTTGGAAATCCTAAGGGG+TGG | 0.634143 | 5.3:-11155170 | None:intergenic |
| TGAGTCAGATGCTTCTACGG+TGG | 0.636061 | 5.3:+11155370 | MS.gene89854:CDS |
| CGAAGGGCTTGATGGTGCAG+AGG | 0.637998 | 5.3:-11155306 | None:intergenic |
| GCTTACTCTAGGGTTTGGAA+AGG | 0.640157 | 5.3:+11155655 | MS.gene89854:CDS |
| TTTCATAAGATTAAAAGTAG+GGG | 0.644722 | 5.3:-11155450 | None:intergenic |
| TCTCCCGGAGGATCCACCGC+CGG | 0.650116 | 5.3:-11153984 | None:intergenic |
| TGGCAGAGTCGTGAAGCCGT+GGG | 0.659403 | 5.3:+11155592 | MS.gene89854:CDS |
| TTCGCCGGAACGATGACCGG+CGG | 0.661466 | 5.3:+11153968 | None:intergenic |
| CTCGGGAACGAAGAAGACTG+TGG | 0.666027 | 5.3:-11155038 | None:intergenic |
| CCATTACCAAATGAAATGGG+AGG | 0.683902 | 5.3:+11154948 | MS.gene89854:CDS |
| GGAAGGTGAGAGAATTCATG+AGG | 0.688457 | 5.3:+11155613 | MS.gene89854:CDS |
| CCATGTTGGTAATCTCCCGG+AGG | 0.694898 | 5.3:-11153996 | None:intergenic |
| GCACTGTTGGAAATCCTAAG+GGG | 0.712978 | 5.3:-11155173 | None:intergenic |
| CTTCTCGGAGAAGAAAGAGG+TGG | 0.713886 | 5.3:-11155206 | None:intergenic |
| ATCATATCCATCGAACTCTG+GGG | 0.720256 | 5.3:-11155491 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTCATAAAATTGATT+CGG | - | chr5.3:11154510-11154529 | None:intergenic | 10.0% |
| !!! | TTTTCCAATTTAATAGTTTA+TGG | - | chr5.3:11154830-11154849 | None:intergenic | 15.0% |
| !! | AACACCATAAACTATTAAAT+TGG | + | chr5.3:11154823-11154842 | MS.gene89854:intron | 20.0% |
| !! | ATTTAATAGTTTATGGTGTT+TGG | - | chr5.3:11154823-11154842 | None:intergenic | 20.0% |
| !! | GTTTCATAAGATTAAAAGTA+GGG | - | chr5.3:11155454-11155473 | None:intergenic | 20.0% |
| !! | TTTCATAAGATTAAAAGTAG+GGG | - | chr5.3:11155453-11155472 | None:intergenic | 20.0% |
| ! | AAGCAAGTTAGTTAAAAAAG+TGG | - | chr5.3:11154222-11154241 | None:intergenic | 25.0% |
| ! | AATCGAAGTTAAATCAATTC+TGG | - | chr5.3:11154411-11154430 | None:intergenic | 25.0% |
| ! | AATCGATCTTATAAGAAACT+TGG | + | chr5.3:11154304-11154323 | MS.gene89854:intron | 25.0% |
| ! | GAGTAAATGAATTTGAATCA+GGG | + | chr5.3:11154915-11154934 | MS.gene89854:intron | 25.0% |
| ! | GGTTTCATAAGATTAAAAGT+AGG | - | chr5.3:11155455-11155474 | None:intergenic | 25.0% |
| ! | TCATTATTATCACAGTGTTT+AGG | - | chr5.3:11154118-11154137 | None:intergenic | 25.0% |
| ! | TGAGTAAATGAATTTGAATC+AGG | + | chr5.3:11154914-11154933 | MS.gene89854:intron | 25.0% |
| !! | AGAATTGATTTAACTTCGAT+TGG | + | chr5.3:11154410-11154429 | MS.gene89854:intron | 25.0% |
| AGACCATTACCAAATGAAAT+GGG | + | chr5.3:11154945-11154964 | MS.gene89854:CDS | 30.0% | |
| ATAAGATTAAAAGTAGGGGA+AGG | - | chr5.3:11155449-11155468 | None:intergenic | 30.0% | |
| CTGTTTAAGTCACATTAAGT+CGG | + | chr5.3:11154646-11154665 | MS.gene89854:intron | 30.0% | |
| TTTAGTAGCTTATGTGTGTT+TGG | - | chr5.3:11154550-11154569 | None:intergenic | 30.0% | |
| ! | TCGAAATCAATTTTTGTCAG+AGG | + | chr5.3:11154793-11154812 | MS.gene89854:intron | 30.0% |
| !! | AGTTAAAGGAAGCATTACAA+AGG | - | chr5.3:11155259-11155278 | None:intergenic | 30.0% |
| !! | GTTAAAGGAAGCATTACAAA+GGG | - | chr5.3:11155258-11155277 | None:intergenic | 30.0% |
| !!! | TCAGATTTTGACTTTGAGAA+TGG | + | chr5.3:11155572-11155591 | MS.gene89854:CDS | 30.0% |
| AGATGGTACTACTTATCGAA+AGG | + | chr5.3:11154183-11154202 | MS.gene89854:CDS | 35.0% | |
| ATTGCTGCTAAGATCTATTC+AGG | + | chr5.3:11154064-11154083 | MS.gene89854:CDS | 35.0% | |
| GAACAAGCACTCATATTTGT+TGG | - | chr5.3:11154978-11154997 | None:intergenic | 35.0% | |
| GAGACCATTACCAAATGAAA+TGG | + | chr5.3:11154944-11154963 | MS.gene89854:CDS | 35.0% | |
| TATCATATCCATCGAACTCT+GGG | - | chr5.3:11155495-11155514 | None:intergenic | 35.0% | |
| TTGGGATTGAAGTTATGTTG+CGG | - | chr5.3:11155142-11155161 | None:intergenic | 35.0% | |
| ! | TTTTCTCTCTCTTTCCATGT+TGG | - | chr5.3:11154013-11154032 | None:intergenic | 35.0% |
| !! | CTTGGTTTTTGTGATCTAAG+TGG | + | chr5.3:11154322-11154341 | MS.gene89854:intron | 35.0% |
| AAGAGTTGGAGCTTACTCTA+GGG | + | chr5.3:11155645-11155664 | MS.gene89854:CDS | 40.0% | |
| AATGAGGAAGATTGTGGACT+TGG | - | chr5.3:11155011-11155030 | None:intergenic | 40.0% | |
| AATGGTAGGAGAAAGGAAGA+GGG | - | chr5.3:11155116-11155135 | None:intergenic | 40.0% | |
| AGATTAAAAGTAGGGGAAGG+AGG | - | chr5.3:11155446-11155465 | None:intergenic | 40.0% | |
| AGCACTGTTGGAAATCCTAA+GGG | - | chr5.3:11155177-11155196 | None:intergenic | 40.0% | |
| ATCATATCCATCGAACTCTG+GGG | - | chr5.3:11155494-11155513 | None:intergenic | 40.0% | |
| CCATTACCAAATGAAATGGG+AGG | + | chr5.3:11154948-11154967 | MS.gene89854:CDS | 40.0% | |
| CCTCCCATTTCATTTGGTAA+TGG | - | chr5.3:11154951-11154970 | None:intergenic | 40.0% | |
| GAAGTTATGTTGCGGATGAA+TGG | - | chr5.3:11155134-11155153 | None:intergenic | 40.0% | |
| GAGAATTCATGAGGTAGGAA+TGG | + | chr5.3:11155622-11155641 | MS.gene89854:CDS | 40.0% | |
| GTATCATATCCATCGAACTC+TGG | - | chr5.3:11155496-11155515 | None:intergenic | 40.0% | |
| GTATGAATGAAGCCATGCAA+TGG | + | chr5.3:11155516-11155535 | MS.gene89854:CDS | 40.0% | |
| TTATGTTGCGGATGAATGGT+AGG | - | chr5.3:11155130-11155149 | None:intergenic | 40.0% | |
| ! | TAAGGGGTGGAAGATTTGTT+GGG | - | chr5.3:11155160-11155179 | None:intergenic | 40.0% |
| ! | TATTCAGGTTTACGAGCTCA+AGG | + | chr5.3:11154079-11154098 | MS.gene89854:CDS | 40.0% |
| ! | TTCATGTGCGTTTAGTTCAG+CGG | - | chr5.3:11154701-11154720 | None:intergenic | 40.0% |
| !! | AAAGCTCTTTGTTCTGAAGC+TGG | + | chr5.3:11154145-11154164 | MS.gene89854:CDS | 40.0% |
| !! | GCTTTTCGCTTTGAACTTCT+CGG | - | chr5.3:11155224-11155243 | None:intergenic | 40.0% |
| !! | TTTCCATGTTGGTAATCTCC+CGG | - | chr5.3:11154002-11154021 | None:intergenic | 40.0% |
| AACGAAGAAGACTGTGGACT+TGG | - | chr5.3:11155035-11155054 | None:intergenic | 45.0% | |
| ACGAAGAAGACTGTGGACTT+GGG | - | chr5.3:11155034-11155053 | None:intergenic | 45.0% | |
| ATGGTAGGAGAAAGGAAGAG+GGG | - | chr5.3:11155115-11155134 | None:intergenic | 45.0% | |
| CAACAAATCTTCCACCCCTT+AGG | + | chr5.3:11155159-11155178 | MS.gene89854:CDS | 45.0% | |
| CGATGAGTCAGATGCTTCTA+CGG | + | chr5.3:11155367-11155386 | MS.gene89854:CDS | 45.0% | |
| CTAAGGGGTGGAAGATTTGT+TGG | - | chr5.3:11155161-11155180 | None:intergenic | 45.0% | |
| CTCGTAGGGTATGATGGTAT+TGG | - | chr5.3:11155065-11155084 | None:intergenic | 45.0% | |
| CTTGGGAATGAGGAAGATTG+TGG | - | chr5.3:11155017-11155036 | None:intergenic | 45.0% | |
| GAACTTCTCGGAGAAGAAAG+AGG | - | chr5.3:11155212-11155231 | None:intergenic | 45.0% | |
| GAAGAGTTGGAGCTTACTCT+AGG | + | chr5.3:11155644-11155663 | MS.gene89854:CDS | 45.0% | |
| GAATGGTAGGAGAAAGGAAG+AGG | - | chr5.3:11155117-11155136 | None:intergenic | 45.0% | |
| GCACTGTTGGAAATCCTAAG+GGG | - | chr5.3:11155176-11155195 | None:intergenic | 45.0% | |
| GGAAGGTGAGAGAATTCATG+AGG | + | chr5.3:11155613-11155632 | MS.gene89854:CDS | 45.0% | |
| GGAGTTCCTCCCATTTCATT+TGG | - | chr5.3:11154957-11154976 | None:intergenic | 45.0% | |
| GGTGAGAGAATTCATGAGGT+AGG | + | chr5.3:11155617-11155636 | MS.gene89854:CDS | 45.0% | |
| GGTTGGATCGTTGAAGAAGA+TGG | + | chr5.3:11154166-11154185 | MS.gene89854:CDS | 45.0% | |
| GTAATTCCATCCATGCGAGT+TGG | - | chr5.3:11155089-11155108 | None:intergenic | 45.0% | |
| TGAATTCTCTCACCTTCCCA+CGG | - | chr5.3:11155611-11155630 | None:intergenic | 45.0% | |
| TGAGGTAGGAATGGAAGAGT+TGG | + | chr5.3:11155631-11155650 | MS.gene89854:CDS | 45.0% | |
| TTTCAGACAACAACTGCCCA+TGG | + | chr5.3:11155413-11155432 | MS.gene89854:CDS | 45.0% | |
| ! | GAGCACTGTTGGAAATCCTA+AGG | - | chr5.3:11155178-11155197 | None:intergenic | 45.0% |
| ! | GGGTATGATGGTATTGGACT+CGG | - | chr5.3:11155059-11155078 | None:intergenic | 45.0% |
| ! | GGTATGATGGTATTGGACTC+GGG | - | chr5.3:11155058-11155077 | None:intergenic | 45.0% |
| ! | TGACTCATCGCATTCTGGAA+TGG | - | chr5.3:11155357-11155376 | None:intergenic | 45.0% |
| !! | CTCTTTGTTCTGAAGCTGGT+TGG | + | chr5.3:11154149-11154168 | MS.gene89854:CDS | 45.0% |
| !! | GCTTACTCTAGGGTTTGGAA+AGG | + | chr5.3:11155655-11155674 | MS.gene89854:CDS | 45.0% |
| !! | TTGGAGCTTACTCTAGGGTT+TGG | + | chr5.3:11155650-11155669 | MS.gene89854:CDS | 45.0% |
| AGACTGTGGACTTGGGAATG+AGG | - | chr5.3:11155027-11155046 | None:intergenic | 50.0% | |
| ATGGTGCAGAGGTAGCGAAA+AGG | - | chr5.3:11155298-11155317 | None:intergenic | 50.0% | |
| CTGTTGGAAATCCTAAGGGG+TGG | - | chr5.3:11155173-11155192 | None:intergenic | 50.0% | |
| CTTCTCGGAGAAGAAAGAGG+TGG | - | chr5.3:11155209-11155228 | None:intergenic | 50.0% | |
| GAAGAAAGAGGTGGCGTAAC+AGG | - | chr5.3:11155200-11155219 | None:intergenic | 50.0% | |
| GCATCTGACTCATCGCATTC+TGG | - | chr5.3:11155362-11155381 | None:intergenic | 50.0% | |
| GCGGATGAATGGTAGGAGAA+AGG | - | chr5.3:11155123-11155142 | None:intergenic | 50.0% | |
| GTAAGTGGTTACGTCGCGAA+GGG | - | chr5.3:11155325-11155344 | None:intergenic | 50.0% | |
| GTGGCGAAACGTGGAGTTAA+AGG | - | chr5.3:11155273-11155292 | None:intergenic | 50.0% | |
| GTTGGACTCGTAGGGTATGA+TGG | - | chr5.3:11155071-11155090 | None:intergenic | 50.0% | |
| TCAGCTACTGAGAGAGGTAG+AGG | + | chr5.3:11155548-11155567 | MS.gene89854:CDS | 50.0% | |
| TGAACCTGCACTCCATTGCA+TGG | - | chr5.3:11155531-11155550 | None:intergenic | 50.0% | |
| TGAGTCAGATGCTTCTACGG+TGG | + | chr5.3:11155370-11155389 | MS.gene89854:CDS | 50.0% | |
| TGGTGCAGAGGTAGCGAAAA+GGG | - | chr5.3:11155297-11155316 | None:intergenic | 50.0% | |
| !! | CATTCTGGAATGGTGGAAGG+GGG | - | chr5.3:11155347-11155366 | None:intergenic | 50.0% |
| !! | CGCATTCTGGAATGGTGGAA+GGG | - | chr5.3:11155349-11155368 | None:intergenic | 50.0% |
| !! | CTCATCGCATTCTGGAATGG+TGG | - | chr5.3:11155354-11155373 | None:intergenic | 50.0% |
| !! | GCATTCTGGAATGGTGGAAG+GGG | - | chr5.3:11155348-11155367 | None:intergenic | 50.0% |
| !! | TCGCATTCTGGAATGGTGGA+AGG | - | chr5.3:11155350-11155369 | None:intergenic | 50.0% |
| ACGAGTCCAACTCGCATGGA+TGG | + | chr5.3:11155080-11155099 | MS.gene89854:CDS | 55.0% | |
| CCTCCGGGAGATTACCAACA+TGG | + | chr5.3:11153996-11154015 | MS.gene89854:CDS | 55.0% | |
| CTCGGGAACGAAGAAGACTG+TGG | - | chr5.3:11155041-11155060 | None:intergenic | 55.0% | |
| GAAGCCATGCAATGGAGTGC+AGG | + | chr5.3:11155524-11155543 | MS.gene89854:CDS | 55.0% | |
| GATCACTCCCCAGAGTTCGA+TGG | + | chr5.3:11155484-11155503 | MS.gene89854:CDS | 55.0% | |
| GCAGGTTCAGCTACTGAGAG+AGG | + | chr5.3:11155542-11155561 | MS.gene89854:CDS | 55.0% | |
| GGTAAGTGGTTACGTCGCGA+AGG | - | chr5.3:11155326-11155345 | None:intergenic | 55.0% | |
| GGTGCAGAGGTAGCGAAAAG+GGG | - | chr5.3:11155296-11155315 | None:intergenic | 55.0% | |
| GTGCAGAGGTAGCGAAAAGG+GGG | - | chr5.3:11155295-11155314 | None:intergenic | 55.0% | |
| TGGGGAGTGATCTGCATTGC+TGG | - | chr5.3:11155476-11155495 | None:intergenic | 55.0% | |
| TTACGTCGCGAAGGGCTTGA+TGG | - | chr5.3:11155317-11155336 | None:intergenic | 55.0% | |
| ! | CCATGCGAGTTGGACTCGTA+GGG | - | chr5.3:11155079-11155098 | None:intergenic | 55.0% |
| ! | CTTCTACGGTGGACTCTGGT+AGG | + | chr5.3:11155381-11155400 | MS.gene89854:CDS | 55.0% |
| ! | GAATGGTGGAAGGGGGTAAG+TGG | - | chr5.3:11155340-11155359 | None:intergenic | 55.0% |
| ! | GATGCTTCTACGGTGGACTC+TGG | + | chr5.3:11155377-11155396 | MS.gene89854:CDS | 55.0% |
| ! | TACGGTGGACTCTGGTAGGT+GGG | + | chr5.3:11155385-11155404 | MS.gene89854:CDS | 55.0% |
| ! | TCCATGCGAGTTGGACTCGT+AGG | - | chr5.3:11155080-11155099 | None:intergenic | 55.0% |
| !! | CCATGTTGGTAATCTCCCGG+AGG | - | chr5.3:11153999-11154018 | None:intergenic | 55.0% |
| !! | TGGCGTAACAGGAGCACTGT+TGG | - | chr5.3:11155189-11155208 | None:intergenic | 55.0% |
| AGAGTCGTGAAGCCGTGGGA+AGG | + | chr5.3:11155596-11155615 | MS.gene89854:CDS | 60.0% | |
| ATGGCAGAGTCGTGAAGCCG+TGG | + | chr5.3:11155591-11155610 | MS.gene89854:CDS | 60.0% | |
| CAGAGGTAGCGAAAAGGGGG+TGG | - | chr5.3:11155292-11155311 | None:intergenic | 60.0% | |
| CCCTACGAGTCCAACTCGCA+TGG | + | chr5.3:11155076-11155095 | MS.gene89854:CDS | 60.0% | |
| GAAAAGGGGGTGGCGAAACG+TGG | - | chr5.3:11155282-11155301 | None:intergenic | 60.0% | |
| GGAAGGAGGAGCTGCACCAT+GGG | - | chr5.3:11155432-11155451 | None:intergenic | 60.0% | |
| TGGCAGAGTCGTGAAGCCGT+GGG | + | chr5.3:11155592-11155611 | MS.gene89854:CDS | 60.0% | |
| ! | CTACGGTGGACTCTGGTAGG+TGG | + | chr5.3:11155384-11155403 | MS.gene89854:CDS | 60.0% |
| !! | CGAAGGGCTTGATGGTGCAG+AGG | - | chr5.3:11155309-11155328 | None:intergenic | 60.0% |
| ATGACCGGCGGTGGATCCTC+CGG | + | chr5.3:11153980-11153999 | MS.gene89854:CDS | 65.0% | |
| GGGAAGGAGGAGCTGCACCA+TGG | - | chr5.3:11155433-11155452 | None:intergenic | 65.0% | |
| TCTCCCGGAGGATCCACCGC+CGG | - | chr5.3:11153987-11154006 | None:intergenic | 70.0% | |
| TGACCGGCGGTGGATCCTCC+GGG | + | chr5.3:11153981-11154000 | MS.gene89854:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 11153980 | 11155682 | 11153980 | ID=MS.gene89854 |
| chr5.3 | mRNA | 11153980 | 11155682 | 11153980 | ID=MS.gene89854.t1;Parent=MS.gene89854 |
| chr5.3 | exon | 11153980 | 11154204 | 11153980 | ID=MS.gene89854.t1.exon1;Parent=MS.gene89854.t1 |
| chr5.3 | CDS | 11153980 | 11154204 | 11153980 | ID=cds.MS.gene89854.t1;Parent=MS.gene89854.t1 |
| chr5.3 | exon | 11154936 | 11155682 | 11154936 | ID=MS.gene89854.t1.exon2;Parent=MS.gene89854.t1 |
| chr5.3 | CDS | 11154936 | 11155682 | 11154936 | ID=cds.MS.gene89854.t1;Parent=MS.gene89854.t1 |
| Gene Sequence |
| Protein sequence |
