Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90024.t1 | GAU27691.1 | 71.4 | 346 | 86 | 2 | 2 | 334 | 16 | 361 | 9.70E-113 | 416.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90024.t1 | O81123 | 53.4 | 339 | 153 | 2 | 1 | 334 | 17 | 355 | 2.6e-74 | 280.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90024.t1 | A0A2Z6M6N0 | 71.4 | 346 | 86 | 2 | 2 | 334 | 16 | 361 | 7.0e-113 | 416.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62494 | MS.gene90024 | PPI |
| MS.gene038972 | MS.gene90024 | PPI |
| MS.gene045723 | MS.gene90024 | PPI |
| MS.gene90024 | MS.gene54167 | PPI |
| MS.gene009810 | MS.gene90024 | PPI |
| MS.gene066193 | MS.gene90024 | PPI |
| MS.gene90024 | MS.gene56999 | PPI |
| MS.gene50197 | MS.gene90024 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90024.t1 | MTR_3g081640 | 76.369 | 347 | 69 | 1 | 1 | 334 | 15 | 361 | 0.0 | 508 |
| MS.gene90024.t1 | MTR_3g081580 | 74.128 | 344 | 79 | 3 | 1 | 334 | 15 | 358 | 4.20e-172 | 482 |
| MS.gene90024.t1 | MTR_3g082050 | 75.740 | 338 | 77 | 1 | 2 | 334 | 12 | 349 | 3.47e-164 | 462 |
| MS.gene90024.t1 | MTR_3g082050 | 75.821 | 335 | 76 | 1 | 5 | 334 | 43 | 377 | 2.91e-163 | 460 |
| MS.gene90024.t1 | MTR_3g082050 | 76.341 | 317 | 70 | 1 | 23 | 334 | 56 | 372 | 6.90e-161 | 454 |
| MS.gene90024.t1 | MTR_3g081690 | 75.862 | 319 | 72 | 1 | 2 | 315 | 12 | 330 | 1.50e-153 | 434 |
| MS.gene90024.t1 | MTR_3g081690 | 76.510 | 298 | 65 | 1 | 23 | 315 | 56 | 353 | 2.74e-150 | 427 |
| MS.gene90024.t1 | MTR_2g064310 | 56.560 | 343 | 139 | 3 | 2 | 334 | 16 | 358 | 4.36e-133 | 383 |
| MS.gene90024.t1 | MTR_6g007687 | 51.176 | 340 | 150 | 4 | 1 | 332 | 14 | 345 | 2.84e-107 | 317 |
| MS.gene90024.t1 | MTR_8g105030 | 49.702 | 336 | 158 | 3 | 1 | 328 | 15 | 347 | 4.58e-107 | 318 |
| MS.gene90024.t1 | MTR_4g083570 | 48.817 | 338 | 169 | 3 | 1 | 334 | 13 | 350 | 6.58e-107 | 316 |
| MS.gene90024.t1 | MTR_3g104400 | 47.368 | 361 | 149 | 4 | 15 | 334 | 5 | 365 | 2.47e-102 | 305 |
| MS.gene90024.t1 | MTR_1g016120 | 46.409 | 362 | 152 | 6 | 15 | 334 | 13 | 374 | 3.08e-95 | 287 |
| MS.gene90024.t1 | MTR_3g081690 | 71.681 | 226 | 56 | 2 | 98 | 315 | 14 | 239 | 2.45e-93 | 278 |
| MS.gene90024.t1 | MTR_3g081690 | 73.958 | 192 | 50 | 0 | 124 | 315 | 4 | 195 | 6.40e-83 | 250 |
| MS.gene90024.t1 | MTR_3g081690 | 75.806 | 186 | 45 | 0 | 130 | 315 | 32 | 217 | 7.41e-82 | 248 |
| MS.gene90024.t1 | MTR_5g071990 | 42.900 | 331 | 160 | 8 | 11 | 334 | 10 | 318 | 2.15e-78 | 242 |
| MS.gene90024.t1 | MTR_3g081630 | 51.685 | 89 | 33 | 3 | 67 | 155 | 23 | 101 | 3.77e-18 | 80.1 |
| MS.gene90024.t1 | MTR_4g006710 | 44.186 | 86 | 47 | 1 | 23 | 108 | 26 | 110 | 1.10e-14 | 69.7 |
| MS.gene90024.t1 | MTR_2g097580 | 22.373 | 295 | 194 | 10 | 51 | 333 | 64 | 335 | 6.47e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90024.t1 | AT3G12750 | 55.652 | 345 | 136 | 4 | 1 | 334 | 17 | 355 | 7.46e-129 | 372 |
| MS.gene90024.t1 | AT1G05300 | 54.848 | 330 | 136 | 4 | 16 | 334 | 33 | 360 | 2.65e-118 | 346 |
| MS.gene90024.t1 | AT2G32270 | 53.235 | 340 | 132 | 5 | 4 | 334 | 18 | 339 | 1.34e-111 | 328 |
| MS.gene90024.t1 | AT1G31260 | 49.408 | 338 | 159 | 3 | 9 | 334 | 27 | 364 | 9.27e-108 | 319 |
| MS.gene90024.t1 | AT5G62160 | 51.009 | 347 | 152 | 7 | 1 | 334 | 14 | 355 | 4.86e-107 | 317 |
| MS.gene90024.t1 | AT4G19680 | 46.746 | 338 | 171 | 4 | 3 | 334 | 16 | 350 | 5.86e-101 | 301 |
| MS.gene90024.t1 | AT4G19690 | 47.006 | 334 | 168 | 2 | 3 | 334 | 21 | 347 | 4.92e-98 | 293 |
| MS.gene90024.t1 | AT2G04032 | 48.457 | 324 | 148 | 5 | 24 | 334 | 48 | 365 | 6.70e-98 | 294 |
| MS.gene90024.t1 | AT1G10970 | 44.932 | 365 | 155 | 5 | 16 | 334 | 10 | 374 | 1.24e-93 | 283 |
| MS.gene90024.t1 | AT1G10970 | 44.932 | 365 | 155 | 5 | 16 | 334 | 10 | 374 | 1.24e-93 | 283 |
| MS.gene90024.t1 | AT1G60960 | 41.562 | 397 | 168 | 7 | 2 | 334 | 19 | 415 | 1.18e-89 | 275 |
| MS.gene90024.t1 | AT1G60960 | 41.562 | 397 | 168 | 7 | 2 | 334 | 29 | 425 | 1.29e-89 | 275 |
| MS.gene90024.t1 | AT4G33020 | 41.081 | 370 | 165 | 5 | 15 | 334 | 25 | 391 | 7.59e-86 | 264 |
| MS.gene90024.t1 | AT4G33020 | 40.751 | 346 | 154 | 4 | 37 | 334 | 2 | 344 | 3.81e-79 | 245 |
| MS.gene90024.t1 | AT2G30080 | 43.077 | 325 | 171 | 6 | 23 | 334 | 18 | 341 | 1.19e-74 | 234 |
| MS.gene90024.t1 | AT1G05300 | 51.092 | 229 | 99 | 4 | 16 | 233 | 33 | 259 | 1.01e-69 | 218 |
| MS.gene90024.t1 | AT4G19680 | 44.351 | 239 | 124 | 4 | 3 | 235 | 16 | 251 | 3.15e-62 | 199 |
| MS.gene90024.t1 | AT4G19690 | 38.587 | 184 | 104 | 2 | 3 | 184 | 21 | 197 | 1.02e-30 | 115 |
| MS.gene90024.t1 | AT1G60960 | 35.714 | 210 | 99 | 5 | 2 | 175 | 29 | 238 | 1.06e-28 | 113 |
Find 62 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAATTCACCTTGTTTAA+AGG | 0.198892 | 7.4:-72848777 | MS.gene90024:CDS |
| AGCCGGAATCTTAATTTATA+TGG | 0.200488 | 7.4:-72847250 | MS.gene90024:CDS |
| GTTATTCATTCGGTTATAAT+AGG | 0.239840 | 7.4:-72848359 | MS.gene90024:CDS |
| TGCAGCTACGAGTGGCTTTA+TGG | 0.261742 | 7.4:+72848304 | None:intergenic |
| CTTCATGCTCTACATCATTC+TGG | 0.327634 | 7.4:+72848627 | None:intergenic |
| GAGATAGAATGCATCCTAAT+AGG | 0.339466 | 7.4:+72847166 | None:intergenic |
| AATAGTAAAAGACTCCTATT+AGG | 0.354349 | 7.4:-72847180 | MS.gene90024:CDS |
| TGCCATATAAATTAAGATTC+CGG | 0.361053 | 7.4:+72847248 | None:intergenic |
| TTACCTGTGATATAACTCTA+TGG | 0.368344 | 7.4:+72848522 | None:intergenic |
| CGTGGCTATGTTCTCTGCTA+TGG | 0.382601 | 7.4:-72848720 | MS.gene90024:CDS |
| TTGTTTAAAGGATCATCCTT+GGG | 0.389742 | 7.4:-72848765 | MS.gene90024:CDS |
| ATAGCCACGAATTCGGCTAA+TGG | 0.397053 | 7.4:+72848734 | None:intergenic |
| GTTGGGTATTGTTATTCATT+CGG | 0.409575 | 7.4:-72848369 | MS.gene90024:CDS |
| GTGGCTATGTTCTCTGCTAT+GGG | 0.410168 | 7.4:-72848719 | MS.gene90024:CDS |
| CCTAAGGCTCTTATTGTTGA+AGG | 0.411092 | 7.4:-72847291 | MS.gene90024:CDS |
| TGCATTCTATCTCTTGTACT+TGG | 0.416873 | 7.4:-72847156 | MS.gene90024:CDS |
| CTTCTGCGGCTGTTAGTGTT+GGG | 0.421692 | 7.4:+72849035 | None:intergenic |
| TTGACTACTCCGGTAGGGAT+TGG | 0.423041 | 7.4:-72847354 | MS.gene90024:CDS |
| GGTATCACTTTGCCGAGAAA+AGG | 0.433323 | 7.4:+72848905 | None:intergenic |
| TATCTTGTAAACAAGGGCTT+TGG | 0.436160 | 7.4:+72848976 | None:intergenic |
| CCTTCTGCGGCTGTTAGTGT+TGG | 0.438219 | 7.4:+72849034 | None:intergenic |
| CCTTCAACAATAAGAGCCTT+AGG | 0.440595 | 7.4:+72847291 | None:intergenic |
| AGAGAACATAGCCACGAATT+CGG | 0.443717 | 7.4:+72848727 | None:intergenic |
| CTGTTAGTGTTGGGATTATG+AGG | 0.443819 | 7.4:+72849044 | None:intergenic |
| GAATGTATCTATTGCAATCA+TGG | 0.445997 | 7.4:-72847391 | MS.gene90024:CDS |
| TTAAGACTCTCTGAAGCATC+CGG | 0.452112 | 7.4:+72848794 | None:intergenic |
| CTTGTTTAAAGGATCATCCT+TGG | 0.464419 | 7.4:-72848766 | MS.gene90024:CDS |
| CTATCTCTTGTACTTGGAGC+CGG | 0.477778 | 7.4:-72847150 | MS.gene90024:CDS |
| AATGTATAGGTGCTGGAGTT+GGG | 0.481740 | 7.4:-72848386 | MS.gene90024:intron |
| GTAGGGATTGGAATTGGTCT+AGG | 0.485389 | 7.4:-72847342 | MS.gene90024:CDS |
| ACTCCGGTAGGGATTGGAAT+TGG | 0.485985 | 7.4:-72847348 | MS.gene90024:CDS |
| CGGGAGCACATGAACGAAAC+CGG | 0.489796 | 7.4:+72848814 | None:intergenic |
| CGGTTTCGTTCATGTGCTCC+CGG | 0.492507 | 7.4:-72848813 | MS.gene90024:CDS |
| CATGGTCATGCCTCTACAGA+TGG | 0.493108 | 7.4:-72848563 | MS.gene90024:CDS |
| GAATGTATAGGTGCTGGAGT+TGG | 0.495116 | 7.4:-72848387 | MS.gene90024:intron |
| ATCTTCAATGCAGCTTCAGC+CGG | 0.496676 | 7.4:-72847267 | MS.gene90024:CDS |
| GTATCACTTTGCCGAGAAAA+GGG | 0.498507 | 7.4:+72848906 | None:intergenic |
| ATACTAGTTGCAAGTGCAAT+CGG | 0.511165 | 7.4:-72848938 | MS.gene90024:CDS |
| GGCTAAAAGAGACATGCAAC+CGG | 0.527349 | 7.4:+72847131 | None:intergenic |
| TTTCTTTGACTACTCCGGTA+GGG | 0.530495 | 7.4:-72847359 | MS.gene90024:CDS |
| TTCATCACATGTACCTTCTG+CGG | 0.530960 | 7.4:+72849021 | None:intergenic |
| TAGGGATTGGAATTGGTCTA+GGG | 0.549857 | 7.4:-72847341 | MS.gene90024:CDS |
| AAGCTGCTATCTTGTAAACA+AGG | 0.556111 | 7.4:+72848969 | None:intergenic |
| GTTATAATAGGAATTTCTCT+CGG | 0.577131 | 7.4:-72848347 | MS.gene90024:CDS |
| TAAGACTCTCTGAAGCATCC+GGG | 0.588155 | 7.4:+72848795 | None:intergenic |
| ATGGTCATGCCTCTACAGAT+GGG | 0.598457 | 7.4:-72848562 | MS.gene90024:CDS |
| TTATGATGAGAACAGTCCTA+AGG | 0.607068 | 7.4:-72847307 | MS.gene90024:CDS |
| TCGCCATAGAGTTATATCAC+AGG | 0.609441 | 7.4:-72848525 | MS.gene90024:intron |
| CAAGGATGATCCTTTAAACA+AGG | 0.615524 | 7.4:+72848767 | None:intergenic |
| TTCTGATGACCCATCTGTAG+AGG | 0.617295 | 7.4:+72848553 | None:intergenic |
| GCATCACACGGTCATGCACA+TGG | 0.620271 | 7.4:-72848581 | MS.gene90024:CDS |
| AGCTGCTATCTTGTAAACAA+GGG | 0.623629 | 7.4:+72848970 | None:intergenic |
| AGACCAATTCCAATCCCTAC+CGG | 0.624986 | 7.4:+72847345 | None:intergenic |
| TGTTTAAAGGATCATCCTTG+GGG | 0.628226 | 7.4:-72848764 | MS.gene90024:CDS |
| CCAACACTAACAGCCGCAGA+AGG | 0.637499 | 7.4:-72849034 | MS.gene90024:CDS |
| CAGAATGATGTAGAGCATGA+AGG | 0.641469 | 7.4:-72848626 | MS.gene90024:CDS |
| GCTTGGATGTTGTATAACCC+AGG | 0.651585 | 7.4:-72848249 | MS.gene90024:intron |
| AAAGTCAATGCAGCTACGAG+TGG | 0.654533 | 7.4:+72848296 | None:intergenic |
| TGGCTATGTTCTCTGCTATG+GGG | 0.662091 | 7.4:-72848718 | MS.gene90024:CDS |
| GCTAATGGAAAATCACCCCA+AGG | 0.677334 | 7.4:+72848749 | None:intergenic |
| GTTCATACACATGCATCACA+CGG | 0.678954 | 7.4:-72848593 | MS.gene90024:CDS |
| GAGCACATGAACGAAACCGG+TGG | 0.727435 | 7.4:+72848817 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTCTTAAAAAATAATTTA+AGG | - | chr7.4:72848490-72848509 | MS.gene90024:intron | 10.0% |
| !!! | ACAAAAAATATATTTTTTTC+GGG | + | chr7.4:72847302-72847321 | None:intergenic | 10.0% |
| !! | AATAAGTTAACAAACAATTT+AGG | + | chr7.4:72848730-72848749 | None:intergenic | 15.0% |
| !! | ATACTAAATTGGATTTAATA+AGG | + | chr7.4:72848361-72848380 | None:intergenic | 15.0% |
| !! | TACTAAATTGGATTTAATAA+GGG | + | chr7.4:72848360-72848379 | None:intergenic | 15.0% |
| !! | TTTATAGTATATTCTTAAGA+TGG | + | chr7.4:72848588-72848607 | None:intergenic | 15.0% |
| !!! | AAGTTTTATAATTTGAACTA+TGG | - | chr7.4:72848548-72848567 | MS.gene90024:CDS | 15.0% |
| !!! | AGTATCTTATCTTTATATTT+TGG | + | chr7.4:72848227-72848246 | None:intergenic | 15.0% |
| !!! | CAAAAAATATATTTTTTTCG+GGG | + | chr7.4:72847301-72847320 | None:intergenic | 15.0% |
| !!! | TAAATTGTTTGTTAACTTAT+TGG | - | chr7.4:72848729-72848748 | MS.gene90024:CDS | 15.0% |
| !! | AATACATGATTGTTAATTAC+TGG | + | chr7.4:72848005-72848024 | None:intergenic | 20.0% |
| !! | AATTTAATTACTATGTACCA+TGG | - | chr7.4:72847700-72847719 | MS.gene90024:intron | 20.0% |
| !! | ATGAATTGACTATAATTAGT+TGG | - | chr7.4:72848065-72848084 | MS.gene90024:intron | 20.0% |
| !! | CAAAACTAAACATACTAAAT+TGG | + | chr7.4:72848372-72848391 | None:intergenic | 20.0% |
| !! | TTGTTGAAAACTTAAAATCA+CGG | + | chr7.4:72847753-72847772 | None:intergenic | 20.0% |
| !!! | AAAAAGAAACTTAGCTTTAT+AGG | + | chr7.4:72848196-72848215 | None:intergenic | 20.0% |
| !!! | ATTGATTGTTTTGAATGTAT+AGG | - | chr7.4:72847772-72847791 | MS.gene90024:intron | 20.0% |
| !!! | CAATTTAGTATGTTTAGTTT+TGG | - | chr7.4:72848370-72848389 | MS.gene90024:CDS | 20.0% |
| !!! | TAACAATCATGTATTTTCTA+TGG | - | chr7.4:72848010-72848029 | MS.gene90024:intron | 20.0% |
| !!! | TGATCTTTTCTTGTATATTA+GGG | + | chr7.4:72848706-72848725 | None:intergenic | 20.0% |
| !!! | TTGATCTTTTCTTGTATATT+AGG | + | chr7.4:72848707-72848726 | None:intergenic | 20.0% |
| ! | AATAGTAAAAGACTCCTATT+AGG | - | chr7.4:72848991-72849010 | MS.gene90024:CDS | 25.0% |
| ! | AATTTGAACTATGGATATCA+TGG | - | chr7.4:72848557-72848576 | MS.gene90024:CDS | 25.0% |
| ! | GCATACTAAAAAATGATGTT+TGG | + | chr7.4:72848463-72848482 | None:intergenic | 25.0% |
| ! | GTTATAATAGGAATTTCTCT+CGG | - | chr7.4:72847824-72847843 | MS.gene90024:intron | 25.0% |
| ! | GTTATTCATTCGGTTATAAT+AGG | - | chr7.4:72847812-72847831 | MS.gene90024:intron | 25.0% |
| ! | TACTGGAAAGTAAACAAAAA+CGG | + | chr7.4:72847988-72848007 | None:intergenic | 25.0% |
| ! | TATAGAAAACACATAACTTG+TGG | + | chr7.4:72848665-72848684 | None:intergenic | 25.0% |
| ! | TGCCATATAAATTAAGATTC+CGG | + | chr7.4:72848926-72848945 | None:intergenic | 25.0% |
| !! | ACTTTTCATCAACTTTTTGA+AGG | - | chr7.4:72847893-72847912 | MS.gene90024:intron | 25.0% |
| !! | ATAGAAAACACATAACTTGT+GGG | + | chr7.4:72848664-72848683 | None:intergenic | 25.0% |
| !! | TCTTAATTCACCTTGTTTAA+AGG | - | chr7.4:72847394-72847413 | MS.gene90024:CDS | 25.0% |
| !!! | AACTTTGGTTTTCTTTATCA+TGG | - | chr7.4:72848131-72848150 | MS.gene90024:intron | 25.0% |
| !!! | AGTTGGTATTTTTCAAACTT+TGG | - | chr7.4:72848082-72848101 | MS.gene90024:intron | 25.0% |
| !!! | GCTAAGTTTCTTTTTGTTTT+CGG | - | chr7.4:72848201-72848220 | MS.gene90024:intron | 25.0% |
| !!! | TCTTTTTTTGACAAGAACTT+TGG | - | chr7.4:72848116-72848135 | MS.gene90024:intron | 25.0% |
| AGCCGGAATCTTAATTTATA+TGG | - | chr7.4:72848921-72848940 | MS.gene90024:CDS | 30.0% | |
| GAATGTATCTATTGCAATCA+TGG | - | chr7.4:72848780-72848799 | MS.gene90024:CDS | 30.0% | |
| GTGATGAAAAAGATGAAGAT+AGG | - | chr7.4:72847165-72847184 | MS.gene90024:CDS | 30.0% | |
| TTACCTGTGATATAACTCTA+TGG | + | chr7.4:72847652-72847671 | None:intergenic | 30.0% | |
| TTCTATGTAATTGAACACCA+TGG | + | chr7.4:72847720-72847739 | None:intergenic | 30.0% | |
| TTGGATTTAATAAGGGAGTT+TGG | + | chr7.4:72848353-72848372 | None:intergenic | 30.0% | |
| TTGTTTAAAGGATCATCCTT+GGG | - | chr7.4:72847406-72847425 | MS.gene90024:intron | 30.0% | |
| ! | GTTGGGTATTGTTATTCATT+CGG | - | chr7.4:72847802-72847821 | MS.gene90024:intron | 30.0% |
| ! | TTGATACAATTAGAGTACCT+GGG | + | chr7.4:72847942-72847961 | None:intergenic | 30.0% |
| !! | ACGTTTTTGAAAATAAGCAG+TGG | + | chr7.4:72847501-72847520 | None:intergenic | 30.0% |
| AAGCTGCTATCTTGTAAACA+AGG | + | chr7.4:72847205-72847224 | None:intergenic | 35.0% | |
| AGCTGCTATCTTGTAAACAA+GGG | + | chr7.4:72847204-72847223 | None:intergenic | 35.0% | |
| ATACTAGTTGCAAGTGCAAT+CGG | - | chr7.4:72847233-72847252 | MS.gene90024:CDS | 35.0% | |
| ATTGGAAATGCAATCATTGC+AGG | - | chr7.4:72848747-72848766 | MS.gene90024:CDS | 35.0% | |
| CAAGGATGATCCTTTAAACA+AGG | + | chr7.4:72847407-72847426 | None:intergenic | 35.0% | |
| CTTGTTTAAAGGATCATCCT+TGG | - | chr7.4:72847405-72847424 | MS.gene90024:CDS | 35.0% | |
| GAGATAGAATGCATCCTAAT+AGG | + | chr7.4:72849008-72849027 | None:intergenic | 35.0% | |
| TATCTTGTAAACAAGGGCTT+TGG | + | chr7.4:72847198-72847217 | None:intergenic | 35.0% | |
| TGCATTCTATCTCTTGTACT+TGG | - | chr7.4:72849015-72849034 | MS.gene90024:CDS | 35.0% | |
| TGTTTAAAGGATCATCCTTG+GGG | - | chr7.4:72847407-72847426 | MS.gene90024:intron | 35.0% | |
| TTATGATGAGAACAGTCCTA+AGG | - | chr7.4:72848864-72848883 | MS.gene90024:CDS | 35.0% | |
| TTTATGACCAATGCATTAGC+TGG | - | chr7.4:72848316-72848335 | MS.gene90024:CDS | 35.0% | |
| ! | CTTGATACAATTAGAGTACC+TGG | + | chr7.4:72847943-72847962 | None:intergenic | 35.0% |
| ! | GTTCTTTTCTTTGACTACTC+CGG | - | chr7.4:72848807-72848826 | MS.gene90024:CDS | 35.0% |
| !! | ATCAACTTTTTGAAGGCATG+GGG | - | chr7.4:72847900-72847919 | MS.gene90024:intron | 35.0% |
| !! | CATCAACTTTTTGAAGGCAT+GGG | - | chr7.4:72847899-72847918 | MS.gene90024:intron | 35.0% |
| !! | TCATCAACTTTTTGAAGGCA+TGG | - | chr7.4:72847898-72847917 | MS.gene90024:intron | 35.0% |
| !! | TGTTTTGAATGTATAGGTGC+TGG | - | chr7.4:72847778-72847797 | MS.gene90024:intron | 35.0% |
| !!! | CATGTCTCTTTTAGCCTTAT+GGG | - | chr7.4:72849047-72849066 | MS.gene90024:CDS | 35.0% |
| AGAGAACATAGCCACGAATT+CGG | + | chr7.4:72847447-72847466 | None:intergenic | 40.0% | |
| CAAGTTACTTGTGACTGTAC+AGG | - | chr7.4:72847959-72847978 | MS.gene90024:intron | 40.0% | |
| CAGAATGATGTAGAGCATGA+AGG | - | chr7.4:72847545-72847564 | MS.gene90024:intron | 40.0% | |
| CCTAAGGCTCTTATTGTTGA+AGG | - | chr7.4:72848880-72848899 | MS.gene90024:CDS | 40.0% | |
| CCTTCAACAATAAGAGCCTT+AGG | + | chr7.4:72848883-72848902 | None:intergenic | 40.0% | |
| CTTCATGCTCTACATCATTC+TGG | + | chr7.4:72847547-72847566 | None:intergenic | 40.0% | |
| GTATCACTTTGCCGAGAAAA+GGG | + | chr7.4:72847268-72847287 | None:intergenic | 40.0% | |
| GTTCATACACATGCATCACA+CGG | - | chr7.4:72847578-72847597 | MS.gene90024:intron | 40.0% | |
| TCGCCATAGAGTTATATCAC+AGG | - | chr7.4:72847646-72847665 | MS.gene90024:intron | 40.0% | |
| TTCATCACATGTACCTTCTG+CGG | + | chr7.4:72847153-72847172 | None:intergenic | 40.0% | |
| TTTCGATCCAGCTAATGCAT+TGG | + | chr7.4:72848326-72848345 | None:intergenic | 40.0% | |
| TTTCTTTGACTACTCCGGTA+GGG | - | chr7.4:72848812-72848831 | MS.gene90024:CDS | 40.0% | |
| ! | CTGTTAGTGTTGGGATTATG+AGG | + | chr7.4:72847130-72847149 | None:intergenic | 40.0% |
| ! | GGTGTTTGTATCCCTTTTCT+CGG | - | chr7.4:72847254-72847273 | MS.gene90024:CDS | 40.0% |
| ! | GTTATCAAAGCTTTTGCAGC+TGG | - | chr7.4:72847320-72847339 | MS.gene90024:CDS | 40.0% |
| ! | TAGGGATTGGAATTGGTCTA+GGG | - | chr7.4:72848830-72848849 | MS.gene90024:CDS | 40.0% |
| ! | TTTTCCATTAGCCGAATTCG+TGG | - | chr7.4:72847433-72847452 | MS.gene90024:intron | 40.0% |
| ! | TTTTCTTTGACTACTCCGGT+AGG | - | chr7.4:72848811-72848830 | MS.gene90024:CDS | 40.0% |
| !! | AATGTATAGGTGCTGGAGTT+GGG | - | chr7.4:72847785-72847804 | MS.gene90024:intron | 40.0% |
| !! | TTAAGACTCTCTGAAGCATC+CGG | + | chr7.4:72847380-72847399 | None:intergenic | 40.0% |
| !!! | GCATGTCTCTTTTAGCCTTA+TGG | - | chr7.4:72849046-72849065 | MS.gene90024:CDS | 40.0% |
| !!! | TTTTTTTCGGGGCTTAATGC+AGG | + | chr7.4:72847290-72847309 | None:intergenic | 40.0% |
| AAAGTCAATGCAGCTACGAG+TGG | + | chr7.4:72847878-72847897 | None:intergenic | 45.0% | |
| AGACCAATTCCAATCCCTAC+CGG | + | chr7.4:72848829-72848848 | None:intergenic | 45.0% | |
| ATAGCCACGAATTCGGCTAA+TGG | + | chr7.4:72847440-72847459 | None:intergenic | 45.0% | |
| ATCTTCAATGCAGCTTCAGC+CGG | - | chr7.4:72848904-72848923 | MS.gene90024:CDS | 45.0% | |
| ATGGTCATGCCTCTACAGAT+GGG | - | chr7.4:72847609-72847628 | MS.gene90024:intron | 45.0% | |
| CTATCTCTTGTACTTGGAGC+CGG | - | chr7.4:72849021-72849040 | MS.gene90024:CDS | 45.0% | |
| GCTAATGGAAAATCACCCCA+AGG | + | chr7.4:72847425-72847444 | None:intergenic | 45.0% | |
| GCTTGGATGTTGTATAACCC+AGG | - | chr7.4:72847922-72847941 | MS.gene90024:intron | 45.0% | |
| GGCTAAAAGAGACATGCAAC+CGG | + | chr7.4:72849043-72849062 | None:intergenic | 45.0% | |
| GGTATCACTTTGCCGAGAAA+AGG | + | chr7.4:72847269-72847288 | None:intergenic | 45.0% | |
| GTGGCTATGTTCTCTGCTAT+GGG | - | chr7.4:72847452-72847471 | MS.gene90024:intron | 45.0% | |
| TGGCTATGTTCTCTGCTATG+GGG | - | chr7.4:72847453-72847472 | MS.gene90024:intron | 45.0% | |
| TTCTGATGACCCATCTGTAG+AGG | + | chr7.4:72847621-72847640 | None:intergenic | 45.0% | |
| ! | GTAGGGATTGGAATTGGTCT+AGG | - | chr7.4:72848829-72848848 | MS.gene90024:CDS | 45.0% |
| ! | TGCTATGGGGACTCTTTTGA+TGG | - | chr7.4:72847466-72847485 | MS.gene90024:intron | 45.0% |
| !! | GAATGTATAGGTGCTGGAGT+TGG | - | chr7.4:72847784-72847803 | MS.gene90024:intron | 45.0% |
| !! | TAAGACTCTCTGAAGCATCC+GGG | + | chr7.4:72847379-72847398 | None:intergenic | 45.0% |
| !!! | GCTGGTGTTATTTTAGCCAC+CGG | - | chr7.4:72847338-72847357 | MS.gene90024:CDS | 45.0% |
| !! | TGAAATAATATAAATTTAAA+TGG | - | chr7.4:72848623-72848642 | MS.gene90024:CDS | 5.0% |
| !!! | AACAAAAAATATATTTTTTT+CGG | + | chr7.4:72847303-72847322 | None:intergenic | 5.0% |
| !!! | TATTAAATCATATTATATTT+TGG | - | chr7.4:72848397-72848416 | MS.gene90024:intron | 5.0% |
| ACTCCGGTAGGGATTGGAAT+TGG | - | chr7.4:72848823-72848842 | MS.gene90024:CDS | 50.0% | |
| CATGGTCATGCCTCTACAGA+TGG | - | chr7.4:72847608-72847627 | MS.gene90024:intron | 50.0% | |
| CGTGGCTATGTTCTCTGCTA+TGG | - | chr7.4:72847451-72847470 | MS.gene90024:intron | 50.0% | |
| CTTCTGCGGCTGTTAGTGTT+GGG | + | chr7.4:72847139-72847158 | None:intergenic | 50.0% | |
| TTGACTACTCCGGTAGGGAT+TGG | - | chr7.4:72848817-72848836 | MS.gene90024:CDS | 50.0% | |
| ! | TGCAGCTACGAGTGGCTTTA+TGG | + | chr7.4:72847870-72847889 | None:intergenic | 50.0% |
| !! | CTTTTTGAAGGCATGGGGCT+TGG | - | chr7.4:72847905-72847924 | MS.gene90024:intron | 50.0% |
| CCAACACTAACAGCCGCAGA+AGG | - | chr7.4:72847137-72847156 | MS.gene90024:CDS | 55.0% | |
| CCTTCTGCGGCTGTTAGTGT+TGG | + | chr7.4:72847140-72847159 | None:intergenic | 55.0% | |
| CGGTTTCGTTCATGTGCTCC+CGG | - | chr7.4:72847358-72847377 | MS.gene90024:CDS | 55.0% | |
| GAGCACATGAACGAAACCGG+TGG | + | chr7.4:72847357-72847376 | None:intergenic | 55.0% | |
| GCATCACACGGTCATGCACA+TGG | - | chr7.4:72847590-72847609 | MS.gene90024:intron | 55.0% | |
| ! | CGGGAGCACATGAACGAAAC+CGG | + | chr7.4:72847360-72847379 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 72847119 | 72849074 | 72847119 | ID=MS.gene90024 |
| chr7.4 | mRNA | 72847119 | 72849074 | 72847119 | ID=MS.gene90024.t1;Parent=MS.gene90024 |
| chr7.4 | exon | 72848526 | 72849074 | 72848526 | ID=MS.gene90024.t1.exon1;Parent=MS.gene90024.t1 |
| chr7.4 | CDS | 72848526 | 72849074 | 72848526 | ID=cds.MS.gene90024.t1;Parent=MS.gene90024.t1 |
| chr7.4 | exon | 72848250 | 72848399 | 72848250 | ID=MS.gene90024.t1.exon2;Parent=MS.gene90024.t1 |
| chr7.4 | CDS | 72848250 | 72848399 | 72848250 | ID=cds.MS.gene90024.t1;Parent=MS.gene90024.t1 |
| chr7.4 | exon | 72847119 | 72847424 | 72847119 | ID=MS.gene90024.t1.exon3;Parent=MS.gene90024.t1 |
| chr7.4 | CDS | 72847119 | 72847424 | 72847119 | ID=cds.MS.gene90024.t1;Parent=MS.gene90024.t1 |
| Gene Sequence |
| Protein sequence |
