Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90412.t1 | XP_003598626.1 | 97.2 | 355 | 10 | 0 | 1 | 355 | 46 | 400 | 4.40E-180 | 640.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90412.t1 | Q8L7A4 | 68.1 | 354 | 100 | 2 | 3 | 355 | 44 | 385 | 1.6e-135 | 483.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90412.t1 | G7IYV8 | 97.2 | 355 | 10 | 0 | 1 | 355 | 46 | 400 | 3.2e-180 | 640.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90412 | MS.gene023667 | PPI |
| MS.gene02100 | MS.gene90412 | PPI |
| MS.gene90412 | MS.gene74542 | PPI |
| MS.gene90412 | MS.gene003302 | PPI |
| MS.gene90412 | MS.gene03069 | PPI |
| MS.gene058821 | MS.gene90412 | PPI |
| MS.gene27907 | MS.gene90412 | PPI |
| MS.gene90412 | MS.gene47863 | PPI |
| MS.gene90412 | MS.gene058831 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90412.t1 | MTR_3g017500 | 97.183 | 355 | 10 | 0 | 1 | 355 | 46 | 400 | 0.0 | 707 |
| MS.gene90412.t1 | MTR_3g017500 | 96.610 | 354 | 12 | 0 | 2 | 355 | 17 | 370 | 0.0 | 702 |
| MS.gene90412.t1 | MTR_8g038400 | 74.085 | 355 | 91 | 1 | 2 | 355 | 13 | 367 | 0.0 | 538 |
| MS.gene90412.t1 | MTR_8g088320 | 47.126 | 348 | 148 | 4 | 6 | 353 | 9 | 320 | 1.44e-113 | 333 |
| MS.gene90412.t1 | MTR_2g030230 | 45.429 | 350 | 153 | 4 | 6 | 355 | 18 | 329 | 4.25e-106 | 314 |
| MS.gene90412.t1 | MTR_2g011590 | 44.099 | 161 | 81 | 2 | 195 | 351 | 1 | 156 | 2.05e-36 | 130 |
| MS.gene90412.t1 | MTR_8g107340 | 41.250 | 160 | 93 | 1 | 194 | 353 | 17 | 175 | 2.28e-36 | 130 |
| MS.gene90412.t1 | MTR_3g067585 | 43.827 | 162 | 82 | 2 | 194 | 351 | 1 | 157 | 5.96e-36 | 128 |
| MS.gene90412.t1 | MTR_2g027100 | 45.860 | 157 | 84 | 1 | 194 | 349 | 1 | 157 | 1.41e-33 | 122 |
| MS.gene90412.t1 | MTR_1g031650 | 43.871 | 155 | 85 | 2 | 198 | 351 | 6 | 159 | 2.65e-32 | 119 |
| MS.gene90412.t1 | MTR_6g069470 | 38.728 | 173 | 102 | 2 | 181 | 353 | 3 | 171 | 6.55e-31 | 115 |
| MS.gene90412.t1 | MTR_4g084280 | 39.394 | 165 | 91 | 2 | 194 | 354 | 1 | 160 | 1.98e-30 | 114 |
| MS.gene90412.t1 | MTR_6g080710 | 42.609 | 115 | 65 | 1 | 9 | 123 | 19 | 132 | 2.42e-23 | 98.2 |
| MS.gene90412.t1 | MTR_2g080950 | 40.164 | 122 | 65 | 3 | 9 | 130 | 19 | 132 | 1.15e-22 | 99.0 |
| MS.gene90412.t1 | MTR_8g464390 | 42.478 | 113 | 57 | 3 | 9 | 121 | 19 | 123 | 5.98e-22 | 97.1 |
| MS.gene90412.t1 | MTR_1g031650 | 41.803 | 122 | 70 | 1 | 230 | 351 | 2 | 122 | 3.61e-20 | 85.9 |
| MS.gene90412.t1 | MTR_8g100100 | 38.889 | 144 | 62 | 4 | 9 | 127 | 497 | 639 | 9.75e-20 | 91.3 |
| MS.gene90412.t1 | MTR_8g100100 | 38.889 | 144 | 62 | 4 | 9 | 127 | 503 | 645 | 1.02e-19 | 90.9 |
| MS.gene90412.t1 | MTR_7g020860 | 38.806 | 134 | 57 | 3 | 12 | 121 | 508 | 640 | 3.34e-18 | 86.7 |
| MS.gene90412.t1 | MTR_7g020860 | 52.381 | 84 | 37 | 2 | 12 | 93 | 508 | 590 | 4.74e-18 | 85.9 |
| MS.gene90412.t1 | MTR_8g067090 | 53.125 | 64 | 29 | 1 | 18 | 81 | 22 | 84 | 6.58e-18 | 84.7 |
| MS.gene90412.t1 | MTR_8g471120 | 53.125 | 64 | 29 | 1 | 18 | 81 | 22 | 84 | 6.58e-18 | 84.7 |
| MS.gene90412.t1 | MTR_1g069000 | 48.052 | 77 | 39 | 1 | 8 | 84 | 6 | 81 | 8.07e-18 | 84.7 |
| MS.gene90412.t1 | MTR_8g067080 | 50.000 | 70 | 34 | 1 | 12 | 81 | 16 | 84 | 1.15e-17 | 84.0 |
| MS.gene90412.t1 | MTR_8g471110 | 50.000 | 70 | 34 | 1 | 12 | 81 | 16 | 84 | 1.15e-17 | 84.0 |
| MS.gene90412.t1 | MTR_8g067080 | 50.000 | 70 | 34 | 1 | 12 | 81 | 16 | 84 | 1.22e-17 | 84.0 |
| MS.gene90412.t1 | MTR_7g099830 | 48.052 | 77 | 39 | 1 | 8 | 84 | 6 | 81 | 2.54e-17 | 83.2 |
| MS.gene90412.t1 | MTR_3g098680 | 34.286 | 140 | 67 | 3 | 6 | 121 | 497 | 635 | 2.24e-16 | 80.9 |
| MS.gene90412.t1 | MTR_4g074170 | 45.349 | 86 | 43 | 3 | 9 | 91 | 481 | 565 | 3.91e-15 | 77.0 |
| MS.gene90412.t1 | MTR_1g008950 | 36.264 | 91 | 56 | 2 | 199 | 287 | 4 | 94 | 4.02e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90412.t1 | AT3G07940 | 69.209 | 354 | 96 | 2 | 3 | 355 | 44 | 385 | 2.04e-180 | 505 |
| MS.gene90412.t1 | AT4G05330 | 48.286 | 350 | 153 | 4 | 6 | 355 | 15 | 336 | 9.52e-117 | 342 |
| MS.gene90412.t1 | AT4G05330 | 48.286 | 350 | 153 | 4 | 6 | 355 | 15 | 336 | 9.52e-117 | 342 |
| MS.gene90412.t1 | AT4G21160 | 47.714 | 350 | 156 | 4 | 6 | 355 | 15 | 337 | 3.20e-116 | 340 |
| MS.gene90412.t1 | AT4G21160 | 47.714 | 350 | 156 | 4 | 6 | 355 | 15 | 337 | 3.20e-116 | 340 |
| MS.gene90412.t1 | AT4G21160 | 47.714 | 350 | 156 | 4 | 6 | 355 | 15 | 337 | 3.20e-116 | 340 |
| MS.gene90412.t1 | AT4G21160 | 47.714 | 350 | 156 | 4 | 6 | 355 | 15 | 337 | 3.20e-116 | 340 |
| MS.gene90412.t1 | AT4G05330 | 48.297 | 323 | 139 | 4 | 33 | 355 | 7 | 301 | 5.06e-104 | 308 |
| MS.gene90412.t1 | AT3G07940 | 62.009 | 229 | 74 | 2 | 3 | 230 | 44 | 260 | 2.52e-100 | 298 |
| MS.gene90412.t1 | AT1G70800 | 42.073 | 164 | 94 | 1 | 186 | 349 | 2 | 164 | 1.26e-36 | 130 |
| MS.gene90412.t1 | AT1G70790 | 45.098 | 153 | 83 | 1 | 198 | 349 | 6 | 158 | 6.81e-36 | 129 |
| MS.gene90412.t1 | AT1G70790 | 45.098 | 153 | 83 | 1 | 198 | 349 | 6 | 158 | 6.81e-36 | 129 |
| MS.gene90412.t1 | AT1G70790 | 45.098 | 153 | 83 | 1 | 198 | 349 | 6 | 158 | 6.81e-36 | 129 |
| MS.gene90412.t1 | AT1G73580 | 42.500 | 160 | 91 | 1 | 194 | 353 | 4 | 162 | 8.87e-36 | 128 |
| MS.gene90412.t1 | AT1G66360 | 41.975 | 162 | 93 | 1 | 194 | 354 | 1 | 162 | 1.33e-35 | 128 |
| MS.gene90412.t1 | AT1G70810 | 40.506 | 158 | 93 | 1 | 194 | 351 | 1 | 157 | 7.01e-33 | 120 |
| MS.gene90412.t1 | AT5G37740 | 41.250 | 160 | 92 | 1 | 194 | 351 | 1 | 160 | 4.41e-32 | 118 |
| MS.gene90412.t1 | AT2G01540 | 41.830 | 153 | 88 | 1 | 198 | 349 | 6 | 158 | 1.89e-31 | 117 |
| MS.gene90412.t1 | AT5G47710 | 40.881 | 159 | 93 | 1 | 194 | 351 | 1 | 159 | 8.46e-31 | 115 |
| MS.gene90412.t1 | AT5G47710 | 40.881 | 159 | 93 | 1 | 194 | 351 | 1 | 159 | 8.46e-31 | 115 |
| MS.gene90412.t1 | AT5G47710 | 40.881 | 159 | 93 | 1 | 194 | 351 | 1 | 159 | 8.46e-31 | 115 |
| MS.gene90412.t1 | AT5G47710 | 40.881 | 159 | 93 | 1 | 194 | 351 | 1 | 159 | 8.46e-31 | 115 |
| MS.gene90412.t1 | AT1G48590 | 38.415 | 164 | 92 | 2 | 194 | 353 | 6 | 164 | 2.65e-30 | 114 |
| MS.gene90412.t1 | AT1G48590 | 38.415 | 164 | 92 | 2 | 194 | 353 | 6 | 164 | 2.65e-30 | 114 |
| MS.gene90412.t1 | AT1G23140 | 37.267 | 161 | 100 | 1 | 194 | 354 | 1 | 160 | 3.75e-30 | 113 |
| MS.gene90412.t1 | AT1G48590 | 38.415 | 164 | 92 | 2 | 194 | 353 | 37 | 195 | 4.21e-30 | 114 |
| MS.gene90412.t1 | AT3G17980 | 36.585 | 164 | 95 | 2 | 194 | 353 | 13 | 171 | 2.95e-29 | 111 |
| MS.gene90412.t1 | AT5G37740 | 38.824 | 170 | 92 | 2 | 194 | 351 | 1 | 170 | 5.10e-29 | 110 |
| MS.gene90412.t1 | AT5G54310 | 37.059 | 170 | 91 | 3 | 9 | 170 | 19 | 180 | 3.51e-24 | 103 |
| MS.gene90412.t1 | AT3G17660 | 38.938 | 113 | 61 | 2 | 9 | 121 | 19 | 123 | 4.14e-23 | 95.1 |
| MS.gene90412.t1 | AT3G17660 | 38.938 | 113 | 61 | 2 | 9 | 121 | 19 | 123 | 7.56e-23 | 95.9 |
| MS.gene90412.t1 | AT3G17660 | 38.938 | 113 | 61 | 2 | 9 | 121 | 19 | 123 | 1.90e-22 | 95.1 |
| MS.gene90412.t1 | AT1G70790 | 42.857 | 119 | 67 | 1 | 232 | 349 | 3 | 121 | 6.92e-21 | 88.2 |
| MS.gene90412.t1 | AT5G13300 | 51.724 | 87 | 39 | 2 | 9 | 93 | 504 | 589 | 9.83e-19 | 88.2 |
| MS.gene90412.t1 | AT5G61980 | 52.941 | 85 | 37 | 2 | 9 | 91 | 501 | 584 | 1.66e-18 | 87.4 |
| MS.gene90412.t1 | AT2G35210 | 47.222 | 72 | 37 | 1 | 9 | 80 | 13 | 83 | 1.68e-17 | 83.2 |
| MS.gene90412.t1 | AT2G35210 | 49.275 | 69 | 34 | 1 | 12 | 80 | 16 | 83 | 2.97e-17 | 82.8 |
| MS.gene90412.t1 | AT5G46750 | 49.275 | 69 | 34 | 1 | 12 | 80 | 16 | 83 | 5.32e-17 | 82.0 |
| MS.gene90412.t1 | AT2G37550 | 46.753 | 77 | 40 | 1 | 8 | 84 | 6 | 81 | 7.20e-17 | 82.0 |
| MS.gene90412.t1 | AT2G37550 | 46.753 | 77 | 40 | 1 | 8 | 84 | 6 | 81 | 7.20e-17 | 82.0 |
| MS.gene90412.t1 | AT4G17890 | 49.275 | 69 | 34 | 1 | 12 | 80 | 19 | 86 | 1.24e-16 | 80.9 |
| MS.gene90412.t1 | AT3G17660 | 36.207 | 116 | 50 | 4 | 9 | 121 | 19 | 113 | 1.27e-16 | 78.6 |
| MS.gene90412.t1 | AT4G17890 | 49.275 | 69 | 34 | 1 | 12 | 80 | 19 | 86 | 1.68e-16 | 80.5 |
| MS.gene90412.t1 | AT3G53710 | 45.000 | 80 | 43 | 1 | 8 | 87 | 6 | 84 | 2.14e-16 | 80.5 |
| MS.gene90412.t1 | AT3G53710 | 45.000 | 80 | 43 | 1 | 8 | 87 | 6 | 84 | 2.14e-16 | 80.5 |
| MS.gene90412.t1 | AT3G53710 | 45.000 | 80 | 43 | 1 | 8 | 87 | 6 | 84 | 2.14e-16 | 80.5 |
| MS.gene90412.t1 | AT1G10870 | 38.843 | 121 | 53 | 4 | 17 | 122 | 478 | 592 | 2.22e-16 | 80.9 |
| MS.gene90412.t1 | AT1G10870 | 37.302 | 126 | 53 | 4 | 17 | 122 | 478 | 597 | 1.07e-15 | 79.0 |
| MS.gene90412.t1 | AT1G60860 | 54.688 | 64 | 27 | 1 | 17 | 78 | 367 | 430 | 5.67e-15 | 76.6 |
| MS.gene90412.t1 | AT1G60860 | 54.688 | 64 | 27 | 1 | 17 | 78 | 307 | 370 | 6.09e-15 | 76.3 |
| MS.gene90412.t1 | AT1G60860 | 54.688 | 64 | 27 | 1 | 17 | 78 | 478 | 541 | 6.51e-15 | 76.6 |
| MS.gene90412.t1 | AT1G03370 | 37.778 | 90 | 55 | 1 | 201 | 289 | 3 | 92 | 3.01e-11 | 65.5 |
| MS.gene90412.t1 | AT1G03370 | 37.778 | 90 | 55 | 1 | 201 | 289 | 3 | 92 | 4.73e-11 | 64.7 |
Find 67 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAATACTTACACCCATTT+TGG | 0.186231 | 3.1:+10773436 | None:intergenic |
| ATTAAGGTTAATGTGGTTAA+AGG | 0.230072 | 3.1:-10770489 | MS.gene90412:CDS |
| AGGAGCGCTCTGATTTAATT+AGG | 0.259286 | 3.1:-10771533 | MS.gene90412:intron |
| TGAATTTGTTGGATTGATTA+AGG | 0.287189 | 3.1:-10770505 | MS.gene90412:CDS |
| AGTCAATGCAGCTTGGAAAA+TGG | 0.292719 | 3.1:-10769639 | MS.gene90412:CDS |
| TCTTGCGTGGGATGGTATAA+AGG | 0.303502 | 3.1:+10771339 | None:intergenic |
| GTGGATCATCAGAGCCAAAA+TGG | 0.335283 | 3.1:-10773450 | MS.gene90412:CDS |
| AGAACAATTTAAATCCTGTT+TGG | 0.340329 | 3.1:-10770291 | MS.gene90412:CDS |
| TCAATGGAAGAATTCGGTTT+TGG | 0.341563 | 3.1:+10771555 | None:intergenic |
| AGGAATGTGCCTTAGATATA+TGG | 0.355189 | 3.1:+10772442 | None:intergenic |
| GCAGGTATGGTTGAATTTGT+TGG | 0.378256 | 3.1:-10770516 | MS.gene90412:CDS |
| CCTTATGTCATCCTTTCTCT+TGG | 0.379448 | 3.1:-10770429 | MS.gene90412:CDS |
| GGAATAATTTCTCTTGAAGT+AGG | 0.379723 | 3.1:-10769583 | MS.gene90412:CDS |
| GTCAATGCAGCTTGGAAAAT+GGG | 0.386273 | 3.1:-10769638 | MS.gene90412:CDS |
| TATCTCATCTATTGAGTAAG+AGG | 0.392319 | 3.1:+10769484 | None:intergenic |
| TTAAGAGGAGGTATGTTCTC+AGG | 0.392682 | 3.1:+10770244 | None:intergenic |
| AGAGAGCGATGGATGTTATC+TGG | 0.401047 | 3.1:-10773674 | None:intergenic |
| CCTAGGAGTCCATATATCTA+AGG | 0.401334 | 3.1:-10772451 | MS.gene90412:intron |
| AATATCAGGTCTTCAAGTCT+TGG | 0.409591 | 3.1:-10772513 | MS.gene90412:intron |
| CCTTAGATATATGGACTCCT+AGG | 0.411336 | 3.1:+10772451 | None:intergenic |
| TCTCAGGGATTGACAGCATT+AGG | 0.419633 | 3.1:+10770260 | None:intergenic |
| AGACGAACAAGTTGATTCAT+TGG | 0.422191 | 3.1:-10771646 | MS.gene90412:CDS |
| AGTTGATTCATTGGTCAACT+TGG | 0.425133 | 3.1:-10771637 | MS.gene90412:CDS |
| CGCTCCTCAATGGAAGAATT+CGG | 0.431409 | 3.1:+10771549 | None:intergenic |
| ATTAGGCTTTCATTCCAAAC+AGG | 0.437169 | 3.1:+10770277 | None:intergenic |
| GACAATCTGATGCGTCAAGC+TGG | 0.441402 | 3.1:-10773493 | MS.gene90412:CDS |
| GGCTATCGTTTCGAAACAGC+TGG | 0.457258 | 3.1:-10771225 | MS.gene90412:CDS |
| TTTATTTGCATCAAGTGCTC+TGG | 0.459972 | 3.1:-10772486 | MS.gene90412:CDS |
| TTTACTGTTATAGGCAGGTA+TGG | 0.466561 | 3.1:-10770529 | MS.gene90412:intron |
| GCTTGAGGAACTGCTCTGAC+TGG | 0.472926 | 3.1:+10771306 | None:intergenic |
| TAAATCAGAGCGCTCCTCAA+TGG | 0.477617 | 3.1:+10771539 | None:intergenic |
| CTTGCGTGGGATGGTATAAA+GGG | 0.496671 | 3.1:+10771340 | None:intergenic |
| TGTCACTGAATCTAGATGAA+TGG | 0.499000 | 3.1:-10771671 | MS.gene90412:CDS |
| CCAAGAGAAAGGATGACATA+AGG | 0.500819 | 3.1:+10770429 | None:intergenic |
| TGAAGTAGGGAAAGTGAGAC+AGG | 0.503416 | 3.1:-10769569 | MS.gene90412:CDS |
| TCACTATATCTCTGATAGCT+AGG | 0.520516 | 3.1:+10770460 | None:intergenic |
| GAATAATTTCTCTTGAAGTA+GGG | 0.522239 | 3.1:-10769582 | MS.gene90412:CDS |
| CAAGAGAAAGGATGACATAA+GGG | 0.522273 | 3.1:+10770430 | None:intergenic |
| TAAGAGGAGGTATGTTCTCA+GGG | 0.526907 | 3.1:+10770245 | None:intergenic |
| TTACTTGGTGACCAAGAGAA+AGG | 0.533925 | 3.1:+10770418 | None:intergenic |
| GTTGATTCATTGGTCAACTT+GGG | 0.534140 | 3.1:-10771636 | MS.gene90412:CDS |
| GACAATACACTTGTGAAAGA+TGG | 0.535420 | 3.1:-10769604 | MS.gene90412:CDS |
| GATTCATTGGTCAACTTGGG+TGG | 0.538486 | 3.1:-10771633 | MS.gene90412:CDS |
| TGGATCATCAGAGCCAAAAT+GGG | 0.539189 | 3.1:-10773449 | MS.gene90412:CDS |
| ATCATGGAGTCAATGCAGCT+TGG | 0.540788 | 3.1:-10769646 | MS.gene90412:CDS |
| CAAACAACTAGAAATCGTAT+CGG | 0.549847 | 3.1:-10771247 | MS.gene90412:CDS |
| ATATGAGAAATCATCAATCA+TGG | 0.553492 | 3.1:-10769662 | MS.gene90412:CDS |
| TGGATGAAGTTGTTCTTGCG+TGG | 0.558865 | 3.1:+10771326 | None:intergenic |
| AAACAACTAGAAATCGTATC+GGG | 0.562555 | 3.1:-10771246 | MS.gene90412:CDS |
| CTTCCAATCACTAGGTCCAC+AGG | 0.563472 | 3.1:-10773524 | MS.gene90412:intron |
| AACAAGTTCTGTGCTGATTG+TGG | 0.564949 | 3.1:-10773469 | MS.gene90412:CDS |
| ACAATCTGATGCGTCAAGCT+GGG | 0.567342 | 3.1:-10773492 | MS.gene90412:CDS |
| GGATGAAGTTGTTCTTGCGT+GGG | 0.571202 | 3.1:+10771327 | None:intergenic |
| AAAACCGAATTCTTCCATTG+AGG | 0.580396 | 3.1:-10771553 | MS.gene90412:CDS |
| AATCACTAGGTCCACAGGAA+AGG | 0.583413 | 3.1:-10773519 | MS.gene90412:intron |
| TGGATTGATTAAGGTTAATG+TGG | 0.585859 | 3.1:-10770496 | MS.gene90412:CDS |
| TTGTGGAGGATTGTAGCTTG+AGG | 0.590164 | 3.1:+10771291 | None:intergenic |
| GCTATCGTTTCGAAACAGCT+GGG | 0.592491 | 3.1:-10771224 | MS.gene90412:CDS |
| TACAAAGAAGAGTAACTCGT+TGG | 0.593650 | 3.1:-10771176 | MS.gene90412:intron |
| GAAGTTGTTCTTGCGTGGGA+TGG | 0.594112 | 3.1:+10771331 | None:intergenic |
| AGATTGTCTAACCTTTCCTG+TGG | 0.600164 | 3.1:+10773508 | None:intergenic |
| TCTGGTATACACAGAACCCT+AGG | 0.610020 | 3.1:-10772468 | MS.gene90412:CDS |
| CTTAGATATATGGACTCCTA+GGG | 0.621052 | 3.1:+10772452 | None:intergenic |
| CTTGGAAAATGGGTAGCAAG+TGG | 0.649585 | 3.1:-10769628 | MS.gene90412:CDS |
| AGGCTACAAAATGTTGAGAG+AGG | 0.650552 | 3.1:-10769535 | MS.gene90412:CDS |
| CTATCGTTTCGAAACAGCTG+GGG | 0.672902 | 3.1:-10771223 | MS.gene90412:CDS |
| TGAGACAGGAAATCTCATTG+AGG | 0.699747 | 3.1:-10769555 | MS.gene90412:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAGTTATTCAATTTATA+TGG | + | chr3.1:10772045-10772064 | None:intergenic | 15.0% |
| !! | AATACATTTACTTCTTAATT+AGG | - | chr3.1:10770017-10770036 | MS.gene90412:intron | 15.0% |
| !! | AATAGAACAAAAAAATTACA+GGG | + | chr3.1:10772176-10772195 | None:intergenic | 15.0% |
| !! | GATAAATGTAACAATTAAAA+GGG | + | chr3.1:10769513-10769532 | None:intergenic | 15.0% |
| !! | TAATAGAACAAAAAAATTAC+AGG | + | chr3.1:10772177-10772196 | None:intergenic | 15.0% |
| !! | TGATAAATGTAACAATTAAA+AGG | + | chr3.1:10769514-10769533 | None:intergenic | 15.0% |
| !!! | ATTTTCATTTTTATAATCTG+CGG | - | chr3.1:10771073-10771092 | MS.gene90412:intron | 15.0% |
| !!! | TGTTTTTAATTTTATTGTTC+AGG | - | chr3.1:10771740-10771759 | MS.gene90412:intron | 15.0% |
| !! | AAAACAAAAGTGAAAAACAA+TGG | + | chr3.1:10771726-10771745 | None:intergenic | 20.0% |
| !! | AAAGAGAGAGAAAAAAAATA+GGG | - | chr3.1:10772469-10772488 | MS.gene90412:CDS | 20.0% |
| !! | AAATTATACAAATCATGTTG+TGG | + | chr3.1:10769954-10769973 | None:intergenic | 20.0% |
| !! | AAGCAAAAAATATATACTAC+AGG | - | chr3.1:10772376-10772395 | MS.gene90412:intron | 20.0% |
| !! | AATAATCTGAAAACAACTTT+CGG | - | chr3.1:10770322-10770341 | MS.gene90412:intron | 20.0% |
| !! | AATTACAATAATAGATGTGT+CGG | + | chr3.1:10773326-10773345 | None:intergenic | 20.0% |
| !! | AGCAAAAAATATATACTACA+GGG | - | chr3.1:10772377-10772396 | MS.gene90412:intron | 20.0% |
| !! | ATCAAATAACAAACATTATC+CGG | - | chr3.1:10769530-10769549 | MS.gene90412:CDS | 20.0% |
| !! | ATTCATATTTATCTTGAGAT+AGG | - | chr3.1:10771697-10771716 | MS.gene90412:intron | 20.0% |
| !! | TACTAAAACAAAATGTTACA+AGG | - | chr3.1:10772442-10772461 | MS.gene90412:intron | 20.0% |
| !! | TATGTAAAACACATGTTATT+TGG | - | chr3.1:10770742-10770761 | MS.gene90412:intron | 20.0% |
| !! | TATTTCTTCATGGATAAAAA+AGG | - | chr3.1:10770811-10770830 | MS.gene90412:intron | 20.0% |
| !! | TTAATACTTATCATAATGCT+TGG | - | chr3.1:10772780-10772799 | MS.gene90412:intron | 20.0% |
| !! | TTGTTTGAATAACATTATCT+TGG | - | chr3.1:10769787-10769806 | MS.gene90412:intron | 20.0% |
| !! | TTTGTATTTGTTTGAATATC+AGG | - | chr3.1:10770627-10770646 | MS.gene90412:intron | 20.0% |
| !!! | AAAAATTTGTTAGCTAAGAA+AGG | - | chr3.1:10771350-10771369 | MS.gene90412:CDS | 20.0% |
| !!! | AAAATTTGTTAGCTAAGAAA+GGG | - | chr3.1:10771351-10771370 | MS.gene90412:CDS | 20.0% |
| !!! | AATTATTGTTTTCATTTCTG+AGG | + | chr3.1:10773295-10773314 | None:intergenic | 20.0% |
| !!! | ATATTTTGTATTCTGAATTC+TGG | - | chr3.1:10771151-10771170 | MS.gene90412:intron | 20.0% |
| !!! | ATTCAACTTACTATTTTAAG+AGG | + | chr3.1:10772928-10772947 | None:intergenic | 20.0% |
| !!! | GTAAGTATTCACTTTATTTA+TGG | - | chr3.1:10769729-10769748 | MS.gene90412:CDS | 20.0% |
| !!! | TGTGTTTTACATATTATGTT+AGG | + | chr3.1:10770735-10770754 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTTTTATGTAACT+TGG | + | chr3.1:10771584-10771603 | None:intergenic | 20.0% |
| !!! | TTTTCATTTTTATAATCTGC+GGG | - | chr3.1:10771074-10771093 | MS.gene90412:intron | 20.0% |
| ! | AAAGATCATGTACATTATCT+AGG | - | chr3.1:10770785-10770804 | MS.gene90412:intron | 25.0% |
| ! | AACAAGCAAGTTAAAATTGA+TGG | + | chr3.1:10769906-10769925 | None:intergenic | 25.0% |
| ! | AGAACAATTTAAATCCTGTT+TGG | - | chr3.1:10772863-10772882 | MS.gene90412:intron | 25.0% |
| ! | ATATGAGAAATCATCAATCA+TGG | - | chr3.1:10773492-10773511 | MS.gene90412:CDS | 25.0% |
| ! | ATCGACTAAAATGGAAAAAT+AGG | + | chr3.1:10772205-10772224 | None:intergenic | 25.0% |
| ! | ATCTAGGTTATATTTCTTCA+TGG | - | chr3.1:10770801-10770820 | MS.gene90412:intron | 25.0% |
| ! | ATTAAGGTTAATGTGGTTAA+AGG | - | chr3.1:10772665-10772684 | MS.gene90412:intron | 25.0% |
| ! | ATTCTAATTAAGTGCATGTT+TGG | - | chr3.1:10770909-10770928 | MS.gene90412:intron | 25.0% |
| ! | CATCATTTGAAAAATAAGCA+TGG | - | chr3.1:10772969-10772988 | MS.gene90412:intron | 25.0% |
| ! | GAAAGAGAGAGAAAAAAAAT+AGG | - | chr3.1:10772468-10772487 | MS.gene90412:CDS | 25.0% |
| ! | GAATAATTTCTCTTGAAGTA+GGG | - | chr3.1:10773572-10773591 | MS.gene90412:intron | 25.0% |
| ! | GAGAAAAAAAATAGGGATAA+AGG | - | chr3.1:10772476-10772495 | MS.gene90412:CDS | 25.0% |
| ! | GATGAGTTACATTTAACTAT+TGG | - | chr3.1:10771173-10771192 | MS.gene90412:intron | 25.0% |
| ! | GATTTAATTAGGTAACTAAC+TGG | - | chr3.1:10771632-10771651 | MS.gene90412:CDS | 25.0% |
| ! | TAAGCTAGCAAATATAACAT+AGG | + | chr3.1:10770888-10770907 | None:intergenic | 25.0% |
| ! | TCGACTAAAATGGAAAAATA+GGG | + | chr3.1:10772204-10772223 | None:intergenic | 25.0% |
| ! | TTGAAAAATAAGCATGGAAT+TGG | - | chr3.1:10772975-10772994 | MS.gene90412:intron | 25.0% |
| ! | TTTACAAGTAAATGCATGTA+AGG | + | chr3.1:10771418-10771437 | None:intergenic | 25.0% |
| !! | AAATGTTACATCGACTAAAA+TGG | + | chr3.1:10772214-10772233 | None:intergenic | 25.0% |
| !! | ATTCAAAAACGACGATTTTA+TGG | - | chr3.1:10773423-10773442 | MS.gene90412:intron | 25.0% |
| !! | GATAATGTACATGATCTTTT+TGG | + | chr3.1:10770784-10770803 | None:intergenic | 25.0% |
| !! | GTTTTCATATAAGTGCTTAT+GGG | - | chr3.1:10770299-10770318 | MS.gene90412:CDS | 25.0% |
| !! | TGCAACTTTTGCTAAAATTA+CGG | + | chr3.1:10770968-10770987 | None:intergenic | 25.0% |
| !! | TGTTTTCATATAAGTGCTTA+TGG | - | chr3.1:10770298-10770317 | MS.gene90412:CDS | 25.0% |
| !! | TTCAAAAACGACGATTTTAT+GGG | - | chr3.1:10773424-10773443 | MS.gene90412:intron | 25.0% |
| !!! | ATTTTAGTCGATGTAACATT+TGG | - | chr3.1:10772213-10772232 | MS.gene90412:intron | 25.0% |
| !!! | CAAAAATTGACTTGTAACAT+CGG | + | chr3.1:10773222-10773241 | None:intergenic | 25.0% |
| !!! | CTTGTTATTTCTTTGTATCT+TGG | - | chr3.1:10769920-10769939 | MS.gene90412:intron | 25.0% |
| !!! | TCATAACGTTTTTTTTCTTG+TGG | + | chr3.1:10771883-10771902 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTGGATTGATTA+AGG | - | chr3.1:10772649-10772668 | MS.gene90412:intron | 25.0% |
| AAACAACTAGAAATCGTATC+GGG | - | chr3.1:10771908-10771927 | MS.gene90412:intron | 30.0% | |
| AAACTTCAAAAGAAACATGG+TGG | - | chr3.1:10770993-10771012 | MS.gene90412:intron | 30.0% | |
| AAATGATGTCTCACAGAAAA+TGG | + | chr3.1:10772957-10772976 | None:intergenic | 30.0% | |
| AACCTAAAGATGGATATTAC+TGG | + | chr3.1:10772140-10772159 | None:intergenic | 30.0% | |
| AATGCATGTAAGGTATATGT+TGG | + | chr3.1:10771408-10771427 | None:intergenic | 30.0% | |
| ACATGATTTGACATGATTGT+AGG | - | chr3.1:10771457-10771476 | MS.gene90412:intron | 30.0% | |
| ACCTAAAGATGGATATTACT+GGG | + | chr3.1:10772139-10772158 | None:intergenic | 30.0% | |
| ACCTTAATCTTACTTCTCAA+GGG | - | chr3.1:10773014-10773033 | MS.gene90412:intron | 30.0% | |
| ACTTATCATAATGCTTGGAA+AGG | - | chr3.1:10772785-10772804 | MS.gene90412:intron | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | + | chr3.1:10770403-10770422 | None:intergenic | 30.0% | |
| AGTGTAAGCTCAAAGATTAA+GGG | + | chr3.1:10769599-10769618 | None:intergenic | 30.0% | |
| ATGCATGTAAGGTATATGTT+GGG | + | chr3.1:10771407-10771426 | None:intergenic | 30.0% | |
| ATGTTTGAAAACTCAGTATC+CGG | - | chr3.1:10772258-10772277 | MS.gene90412:intron | 30.0% | |
| CAAAATTAAAAGTTTGTCCG+AGG | + | chr3.1:10770491-10770510 | None:intergenic | 30.0% | |
| CAAACAACTAGAAATCGTAT+CGG | - | chr3.1:10771907-10771926 | MS.gene90412:intron | 30.0% | |
| CTCAGTTATAACTTAAGACA+AGG | + | chr3.1:10769863-10769882 | None:intergenic | 30.0% | |
| CTGAAACTTCAAAAGAAACA+TGG | - | chr3.1:10770990-10771009 | MS.gene90412:intron | 30.0% | |
| CTGATAAAATGCTTTGTGAA+TGG | - | chr3.1:10771259-10771278 | MS.gene90412:CDS | 30.0% | |
| CTTTGAGTCTCTAACATATA+GGG | + | chr3.1:10772359-10772378 | None:intergenic | 30.0% | |
| GGAATAATTTCTCTTGAAGT+AGG | - | chr3.1:10773571-10773590 | MS.gene90412:intron | 30.0% | |
| GTTTATCTATCCTACTTGTA+AGG | - | chr3.1:10770447-10770466 | MS.gene90412:CDS | 30.0% | |
| TACCTTAATCTTACTTCTCA+AGG | - | chr3.1:10773013-10773032 | MS.gene90412:intron | 30.0% | |
| TAGTGTAAGCTCAAAGATTA+AGG | + | chr3.1:10769600-10769619 | None:intergenic | 30.0% | |
| TATATGGCAGATGACTAATA+GGG | + | chr3.1:10772029-10772048 | None:intergenic | 30.0% | |
| TCTAGTAACTAATGATGAGA+AGG | + | chr3.1:10771221-10771240 | None:intergenic | 30.0% | |
| TGGATTGATTAAGGTTAATG+TGG | - | chr3.1:10772658-10772677 | MS.gene90412:intron | 30.0% | |
| TTAATCTGTGTATCCAAACA+TGG | + | chr3.1:10770043-10770062 | None:intergenic | 30.0% | |
| TTAGTTGAACTTCTTTAGCA+TGG | + | chr3.1:10771326-10771345 | None:intergenic | 30.0% | |
| TTATATGGCAGATGACTAAT+AGG | + | chr3.1:10772030-10772049 | None:intergenic | 30.0% | |
| TTCATGGATAAAAAAGGAGA+AGG | - | chr3.1:10770817-10770836 | MS.gene90412:intron | 30.0% | |
| TTCTCCCTATTTACTGTTAT+AGG | - | chr3.1:10772616-10772635 | MS.gene90412:intron | 30.0% | |
| TTGACATGAAGAAACTTACT+TGG | + | chr3.1:10772754-10772773 | None:intergenic | 30.0% | |
| ! | AACTTTTGCTAAAATTACGG+TGG | + | chr3.1:10770965-10770984 | None:intergenic | 30.0% |
| ! | ACATTTGGTTTATCTTCTTC+TGG | - | chr3.1:10772228-10772247 | MS.gene90412:intron | 30.0% |
| ! | AGGGATAAAGGTATATTACA+GGG | - | chr3.1:10772488-10772507 | MS.gene90412:CDS | 30.0% |
| ! | AGTTAAAATTGATGGTCCTA+AGG | + | chr3.1:10769898-10769917 | None:intergenic | 30.0% |
| ! | GATACTGAGTTTTCAAACAT+AGG | + | chr3.1:10772258-10772277 | None:intergenic | 30.0% |
| ! | TACTTGCATGTTTAGAATCA+CGG | + | chr3.1:10771041-10771060 | None:intergenic | 30.0% |
| ! | TAGGGATAAAGGTATATTAC+AGG | - | chr3.1:10772487-10772506 | MS.gene90412:CDS | 30.0% |
| ! | TTTTGCCTCTGACTTTAAAT+GGG | + | chr3.1:10772336-10772355 | None:intergenic | 30.0% |
| !! | ATCTTTAGGTTTTGTCGAAA+CGG | - | chr3.1:10772149-10772168 | MS.gene90412:intron | 30.0% |
| !! | CAACTTACTATTTTAAGAGG+AGG | + | chr3.1:10772925-10772944 | None:intergenic | 30.0% |
| !!! | AATTTTGGCTACTTCAAAAG+TGG | + | chr3.1:10773050-10773069 | None:intergenic | 30.0% |
| !!! | TAACGTTTTTTTTCTTGTGG+AGG | + | chr3.1:10771880-10771899 | None:intergenic | 30.0% |
| AAAACCGAATTCTTCCATTG+AGG | - | chr3.1:10771601-10771620 | MS.gene90412:CDS | 35.0% | |
| AAGTTCCAAATGAACTCTAG+AGG | + | chr3.1:10773144-10773163 | None:intergenic | 35.0% | |
| AATATCAGGTCTTCAAGTCT+TGG | - | chr3.1:10770641-10770660 | MS.gene90412:intron | 35.0% | |
| ACCTGCCTATAACAGTAAAT+AGG | + | chr3.1:10772624-10772643 | None:intergenic | 35.0% | |
| ACTGAGAATCATCTTGAGAA+TGG | - | chr3.1:10772517-10772536 | MS.gene90412:intron | 35.0% | |
| AGGAATGTGCCTTAGATATA+TGG | + | chr3.1:10770715-10770734 | None:intergenic | 35.0% | |
| AGGATAGATAAACCACACTA+AGG | + | chr3.1:10770440-10770459 | None:intergenic | 35.0% | |
| AGTCTATTAGTGAGAGCTTA+TGG | + | chr3.1:10770366-10770385 | None:intergenic | 35.0% | |
| ATCATAAACACTTGTGAGAC+CGG | + | chr3.1:10769552-10769571 | None:intergenic | 35.0% | |
| ATTAGGCTTTCATTCCAAAC+AGG | + | chr3.1:10772880-10772899 | None:intergenic | 35.0% | |
| CAAGAGAAAGGATGACATAA+GGG | + | chr3.1:10772727-10772746 | None:intergenic | 35.0% | |
| CATTATCTTGGATCATGAAC+TGG | - | chr3.1:10769799-10769818 | MS.gene90412:intron | 35.0% | |
| CCTGCCTATAACAGTAAATA+GGG | + | chr3.1:10772623-10772642 | None:intergenic | 35.0% | |
| CGTATACAATCTGCATGTAA+GGG | + | chr3.1:10773393-10773412 | None:intergenic | 35.0% | |
| CTGAGAATCATCTTGAGAAT+GGG | - | chr3.1:10772518-10772537 | MS.gene90412:intron | 35.0% | |
| CTTAGATATATGGACTCCTA+GGG | + | chr3.1:10770705-10770724 | None:intergenic | 35.0% | |
| CTTCTTAATTAGGCCATGTT+TGG | - | chr3.1:10770027-10770046 | MS.gene90412:intron | 35.0% | |
| GACAATACACTTGTGAAAGA+TGG | - | chr3.1:10773550-10773569 | MS.gene90412:intron | 35.0% | |
| GGATAGATAAACCACACTAA+GGG | + | chr3.1:10770439-10770458 | None:intergenic | 35.0% | |
| GTTTCGACAAAACCTAAAGA+TGG | + | chr3.1:10772150-10772169 | None:intergenic | 35.0% | |
| GTTTGGATTTAGCAGAATCA+CGG | - | chr3.1:10770926-10770945 | MS.gene90412:intron | 35.0% | |
| TACAAAGAAGAGTAACTCGT+TGG | - | chr3.1:10771978-10771997 | MS.gene90412:intron | 35.0% | |
| TCAAAGATTAAGGGTCTGTT+TGG | + | chr3.1:10769590-10769609 | None:intergenic | 35.0% | |
| TCACTATATCTCTGATAGCT+AGG | + | chr3.1:10772697-10772716 | None:intergenic | 35.0% | |
| TCCCAGTAATATCCATCTTT+AGG | - | chr3.1:10772135-10772154 | MS.gene90412:intron | 35.0% | |
| TCCCTTGAGAAGTAAGATTA+AGG | + | chr3.1:10773018-10773037 | None:intergenic | 35.0% | |
| TCGTATACAATCTGCATGTA+AGG | + | chr3.1:10773394-10773413 | None:intergenic | 35.0% | |
| TGAGAATCATCTTGAGAATG+GGG | - | chr3.1:10772519-10772538 | MS.gene90412:intron | 35.0% | |
| TGTCACTGAATCTAGATGAA+TGG | - | chr3.1:10771483-10771502 | MS.gene90412:intron | 35.0% | |
| TTAATACCTGATCTTGCAGT+CGG | - | chr3.1:10772822-10772841 | MS.gene90412:intron | 35.0% | |
| TTTACTGTTATAGGCAGGTA+TGG | - | chr3.1:10772625-10772644 | MS.gene90412:intron | 35.0% | |
| TTTATTTGCATCAAGTGCTC+TGG | - | chr3.1:10770668-10770687 | MS.gene90412:intron | 35.0% | |
| TTTGCCTCTGACTTTAAATG+GGG | + | chr3.1:10772335-10772354 | None:intergenic | 35.0% | |
| ! | ACTGAGTTTTCAAACATAGG+TGG | + | chr3.1:10772255-10772274 | None:intergenic | 35.0% |
| ! | AGTTGATTCATTGGTCAACT+TGG | - | chr3.1:10771517-10771536 | MS.gene90412:intron | 35.0% |
| ! | ATATGAGCTGCAACAGTTTT+TGG | - | chr3.1:10771768-10771787 | MS.gene90412:intron | 35.0% |
| ! | CTCAAGATGATTCTCAGTTT+TGG | + | chr3.1:10772515-10772534 | None:intergenic | 35.0% |
| ! | GCTTTGAGTCTCTAACATAT+AGG | + | chr3.1:10772360-10772379 | None:intergenic | 35.0% |
| ! | GTGAATACTTACACCCATTT+TGG | + | chr3.1:10769721-10769740 | None:intergenic | 35.0% |
| ! | GTTGATTCATTGGTCAACTT+GGG | - | chr3.1:10771518-10771537 | MS.gene90412:intron | 35.0% |
| ! | GTTTTGCCTCTGACTTTAAA+TGG | + | chr3.1:10772337-10772356 | None:intergenic | 35.0% |
| ! | TACACCTCTAGCATCAATTT+TGG | + | chr3.1:10773065-10773084 | None:intergenic | 35.0% |
| ! | TCAATGGAAGAATTCGGTTT+TGG | + | chr3.1:10771602-10771621 | None:intergenic | 35.0% |
| !! | AGACGAACAAGTTGATTCAT+TGG | - | chr3.1:10771508-10771527 | MS.gene90412:intron | 35.0% |
| !! | GATTGGTCTCTCTAATTAGT+TGG | + | chr3.1:10772292-10772311 | None:intergenic | 35.0% |
| !!! | TAAGCATGGAATTGGTCTTT+TGG | - | chr3.1:10772983-10773002 | MS.gene90412:intron | 35.0% |
| !!! | TTTTGCCTCTAGAGTTCATT+TGG | - | chr3.1:10773136-10773155 | MS.gene90412:intron | 35.0% |
| AGATTGTCTAACCTTTCCTG+TGG | + | chr3.1:10769649-10769668 | None:intergenic | 40.0% | |
| AGGCTACAAAATGTTGAGAG+AGG | - | chr3.1:10773619-10773638 | MS.gene90412:intron | 40.0% | |
| AGTCAATGCAGCTTGGAAAA+TGG | - | chr3.1:10773515-10773534 | MS.gene90412:intron | 40.0% | |
| CCAAGAGAAAGGATGACATA+AGG | + | chr3.1:10772728-10772747 | None:intergenic | 40.0% | |
| CCCTATTTACTGTTATAGGC+AGG | - | chr3.1:10772620-10772639 | MS.gene90412:intron | 40.0% | |
| CCTAGGAGTCCATATATCTA+AGG | - | chr3.1:10770703-10770722 | MS.gene90412:intron | 40.0% | |
| CCTTAGATATATGGACTCCT+AGG | + | chr3.1:10770706-10770725 | None:intergenic | 40.0% | |
| CCTTATGTCATCCTTTCTCT+TGG | - | chr3.1:10772725-10772744 | MS.gene90412:intron | 40.0% | |
| CGAGAAGTTTAGAAGAACTG+AGG | - | chr3.1:10770524-10770543 | MS.gene90412:intron | 40.0% | |
| CTGAATCAAGTGCATGTGTT+TGG | + | chr3.1:10773256-10773275 | None:intergenic | 40.0% | |
| CTTACTTCTCAAGGGATCTT+TGG | - | chr3.1:10773022-10773041 | MS.gene90412:intron | 40.0% | |
| GAGAATCATCTTGAGAATGG+GGG | - | chr3.1:10772520-10772539 | MS.gene90412:intron | 40.0% | |
| GCAGGTATGGTTGAATTTGT+TGG | - | chr3.1:10772638-10772657 | MS.gene90412:intron | 40.0% | |
| GTAGCCAAAATTGATGCTAG+AGG | - | chr3.1:10773058-10773077 | MS.gene90412:intron | 40.0% | |
| GTCAATGCAGCTTGGAAAAT+GGG | - | chr3.1:10773516-10773535 | MS.gene90412:intron | 40.0% | |
| TAATTAGTTGGTCCTTGAGC+CGG | + | chr3.1:10772280-10772299 | None:intergenic | 40.0% | |
| TGAGAAGCTAAAGATGCCTT+AGG | - | chr3.1:10769879-10769898 | MS.gene90412:intron | 40.0% | |
| TGAGACAGGAAATCTCATTG+AGG | - | chr3.1:10773599-10773618 | MS.gene90412:intron | 40.0% | |
| TGGATCATCAGAGCCAAAAT+GGG | - | chr3.1:10769705-10769724 | MS.gene90412:CDS | 40.0% | |
| ! | AAACGACGATTTTATGGGAG+AGG | - | chr3.1:10773429-10773448 | MS.gene90412:intron | 40.0% |
| ! | GCTTTTGCTGCTGATACTAA+TGG | + | chr3.1:10773472-10773491 | None:intergenic | 40.0% |
| ! | TAAGAGGAGGTATGTTCTCA+GGG | + | chr3.1:10772912-10772931 | None:intergenic | 40.0% |
| ! | TCTAGCTTGTAGCTAGAACT+CGG | - | chr3.1:10773110-10773129 | MS.gene90412:intron | 40.0% |
| ! | TTAAGAGGAGGTATGTTCTC+AGG | + | chr3.1:10772913-10772932 | None:intergenic | 40.0% |
| ! | TTACTTGGTGACCAAGAGAA+AGG | + | chr3.1:10772739-10772758 | None:intergenic | 40.0% |
| !! | AACAAGTTCTGTGCTGATTG+TGG | - | chr3.1:10769685-10769704 | MS.gene90412:CDS | 40.0% |
| !! | AGGAGCGCTCTGATTTAATT+AGG | - | chr3.1:10771621-10771640 | MS.gene90412:CDS | 40.0% |
| !! | GCAACAGTTTTTGGATTCTG+AGG | - | chr3.1:10771777-10771796 | MS.gene90412:intron | 40.0% |
| !!! | AGTGCATGTGTTTGGTTTTG+TGG | + | chr3.1:10773248-10773267 | None:intergenic | 40.0% |
| AAAACTCAGTATCCGGCTCA+AGG | - | chr3.1:10772265-10772284 | MS.gene90412:intron | 45.0% | |
| AATCACTAGGTCCACAGGAA+AGG | - | chr3.1:10769635-10769654 | MS.gene90412:CDS | 45.0% | |
| AATCTTACAGTCCTCTAGCG+GGG | - | chr3.1:10772308-10772327 | MS.gene90412:intron | 45.0% | |
| ACAATCTGATGCGTCAAGCT+GGG | - | chr3.1:10769662-10769681 | MS.gene90412:CDS | 45.0% | |
| ACTCAAACAGTCCCTTAGTG+TGG | - | chr3.1:10770425-10770444 | MS.gene90412:CDS | 45.0% | |
| ATCATGGAGTCAATGCAGCT+TGG | - | chr3.1:10773508-10773527 | MS.gene90412:CDS | 45.0% | |
| CAAGCTAGAAGCAACACTAG+AGG | + | chr3.1:10773099-10773118 | None:intergenic | 45.0% | |
| CAATCTTACAGTCCTCTAGC+GGG | - | chr3.1:10772307-10772326 | MS.gene90412:intron | 45.0% | |
| CCAATCTTACAGTCCTCTAG+CGG | - | chr3.1:10772306-10772325 | MS.gene90412:intron | 45.0% | |
| CGCTCCTCAATGGAAGAATT+CGG | + | chr3.1:10771608-10771627 | None:intergenic | 45.0% | |
| CTATCGTTTCGAAACAGCTG+GGG | - | chr3.1:10771931-10771950 | MS.gene90412:intron | 45.0% | |
| CTTGCGTGGGATGGTATAAA+GGG | + | chr3.1:10771817-10771836 | None:intergenic | 45.0% | |
| CTTGGAAAATGGGTAGCAAG+TGG | - | chr3.1:10773526-10773545 | MS.gene90412:intron | 45.0% | |
| GATTCATTGGTCAACTTGGG+TGG | - | chr3.1:10771521-10771540 | MS.gene90412:intron | 45.0% | |
| GCTATCGTTTCGAAACAGCT+GGG | - | chr3.1:10771930-10771949 | MS.gene90412:intron | 45.0% | |
| GGATGAAGTTGTTCTTGCGT+GGG | + | chr3.1:10771830-10771849 | None:intergenic | 45.0% | |
| GTGGATCATCAGAGCCAAAA+TGG | - | chr3.1:10769704-10769723 | MS.gene90412:CDS | 45.0% | |
| TCTCAGGGATTGACAGCATT+AGG | + | chr3.1:10772897-10772916 | None:intergenic | 45.0% | |
| TCTGCATGCTTCCAATCACT+AGG | - | chr3.1:10769622-10769641 | MS.gene90412:CDS | 45.0% | |
| TCTGGTATACACAGAACCCT+AGG | - | chr3.1:10770686-10770705 | MS.gene90412:intron | 45.0% | |
| TCTTGCGTGGGATGGTATAA+AGG | + | chr3.1:10771818-10771837 | None:intergenic | 45.0% | |
| TGAAGTAGGGAAAGTGAGAC+AGG | - | chr3.1:10773585-10773604 | MS.gene90412:intron | 45.0% | |
| TGGATGAAGTTGTTCTTGCG+TGG | + | chr3.1:10771831-10771850 | None:intergenic | 45.0% | |
| TGGATTTAGCAGAATCACGG+TGG | - | chr3.1:10770929-10770948 | MS.gene90412:intron | 45.0% | |
| TTGTGGAGGATTGTAGCTTG+AGG | + | chr3.1:10771866-10771885 | None:intergenic | 45.0% | |
| TTTAGCAGAATCACGGTGGA+TGG | - | chr3.1:10770933-10770952 | MS.gene90412:intron | 45.0% | |
| TTTCCTGTGGACCTAGTGAT+TGG | + | chr3.1:10769636-10769655 | None:intergenic | 45.0% | |
| ! | TAAATCAGAGCGCTCCTCAA+TGG | + | chr3.1:10771618-10771637 | None:intergenic | 45.0% |
| !! | ACTGAGAGCACCTTACAAGT+AGG | + | chr3.1:10770460-10770479 | None:intergenic | 45.0% |
| !! | ATAATCTGCGGGTTAGCGAA+GGG | - | chr3.1:10771085-10771104 | MS.gene90412:intron | 45.0% |
| !! | TATAATCTGCGGGTTAGCGA+AGG | - | chr3.1:10771084-10771103 | MS.gene90412:intron | 45.0% |
| ATCTTACAGTCCTCTAGCGG+GGG | - | chr3.1:10772309-10772328 | MS.gene90412:intron | 50.0% | |
| CCGCTAGAGGACTGTAAGAT+TGG | + | chr3.1:10772309-10772328 | None:intergenic | 50.0% | |
| CTTCCAATCACTAGGTCCAC+AGG | - | chr3.1:10769630-10769649 | MS.gene90412:CDS | 50.0% | |
| GAAGTTGTTCTTGCGTGGGA+TGG | + | chr3.1:10771826-10771845 | None:intergenic | 50.0% | |
| GACAATCTGATGCGTCAAGC+TGG | - | chr3.1:10769661-10769680 | MS.gene90412:CDS | 50.0% | |
| GCTCTCAGTAACATCGTCCT+CGG | - | chr3.1:10770471-10770490 | MS.gene90412:CDS | 50.0% | |
| GGCTATCGTTTCGAAACAGC+TGG | - | chr3.1:10771929-10771948 | MS.gene90412:intron | 50.0% | |
| ! | TCTTCACCGACTGCAAGATC+AGG | + | chr3.1:10772831-10772850 | None:intergenic | 50.0% |
| GCTTGAGGAACTGCTCTGAC+TGG | + | chr3.1:10771851-10771870 | None:intergenic | 55.0% | |
| ! | GGGGCCCCATTTAAAGTCAG+AGG | - | chr3.1:10772328-10772347 | MS.gene90412:intron | 55.0% |
| TTAAATGGGGCCCCCGCTAG+AGG | + | chr3.1:10772322-10772341 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 10769492 | 10773684 | 10769492 | ID=MS.gene90412 |
| chr3.1 | mRNA | 10769492 | 10773684 | 10769492 | ID=MS.gene90412.t1;Parent=MS.gene90412 |
| chr3.1 | exon | 10773675 | 10773684 | 10773675 | ID=MS.gene90412.t1.exon1;Parent=MS.gene90412.t1 |
| chr3.1 | CDS | 10773675 | 10773684 | 10773675 | ID=cds.MS.gene90412.t1;Parent=MS.gene90412.t1 |
| chr3.1 | exon | 10773448 | 10773532 | 10773448 | ID=MS.gene90412.t1.exon2;Parent=MS.gene90412.t1 |
| chr3.1 | CDS | 10773448 | 10773532 | 10773448 | ID=cds.MS.gene90412.t1;Parent=MS.gene90412.t1 |
| chr3.1 | exon | 10772452 | 10772527 | 10772452 | ID=MS.gene90412.t1.exon3;Parent=MS.gene90412.t1 |
| chr3.1 | CDS | 10772452 | 10772527 | 10772452 | ID=cds.MS.gene90412.t1;Parent=MS.gene90412.t1 |
| chr3.1 | exon | 10771534 | 10771697 | 10771534 | ID=MS.gene90412.t1.exon4;Parent=MS.gene90412.t1 |
| chr3.1 | CDS | 10771534 | 10771697 | 10771534 | ID=cds.MS.gene90412.t1;Parent=MS.gene90412.t1 |
| chr3.1 | exon | 10771177 | 10771414 | 10771177 | ID=MS.gene90412.t1.exon5;Parent=MS.gene90412.t1 |
| chr3.1 | CDS | 10771177 | 10771414 | 10771177 | ID=cds.MS.gene90412.t1;Parent=MS.gene90412.t1 |
| chr3.1 | exon | 10770422 | 10770538 | 10770422 | ID=MS.gene90412.t1.exon6;Parent=MS.gene90412.t1 |
| chr3.1 | CDS | 10770422 | 10770538 | 10770422 | ID=cds.MS.gene90412.t1;Parent=MS.gene90412.t1 |
| chr3.1 | exon | 10770240 | 10770335 | 10770240 | ID=MS.gene90412.t1.exon7;Parent=MS.gene90412.t1 |
| chr3.1 | CDS | 10770240 | 10770335 | 10770240 | ID=cds.MS.gene90412.t1;Parent=MS.gene90412.t1 |
| chr3.1 | exon | 10769492 | 10769773 | 10769492 | ID=MS.gene90412.t1.exon8;Parent=MS.gene90412.t1 |
| chr3.1 | CDS | 10769492 | 10769773 | 10769492 | ID=cds.MS.gene90412.t1;Parent=MS.gene90412.t1 |
| Gene Sequence |
| Protein sequence |
