AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023667


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023667.t1 MTR_8g088320 97.819 321 7 0 10 330 2 322 0.0 654
MS.gene023667.t1 MTR_2g030230 78.419 329 69 2 2 330 3 329 0.0 537
MS.gene023667.t1 MTR_3g017500 45.559 349 152 3 17 328 21 368 2.19e-112 331
MS.gene023667.t1 MTR_3g017500 45.559 349 152 3 17 328 51 398 8.08e-112 330
MS.gene023667.t1 MTR_8g038400 44.571 350 157 2 16 328 16 365 2.86e-109 323
MS.gene023667.t1 MTR_8g107340 39.205 176 106 1 153 328 1 175 5.33e-42 144
MS.gene023667.t1 MTR_6g069470 43.750 160 89 1 169 328 13 171 5.40e-42 144
MS.gene023667.t1 MTR_2g027100 45.783 166 77 2 169 327 1 160 6.61e-41 140
MS.gene023667.t1 MTR_3g067585 43.125 160 90 1 169 328 1 159 1.31e-40 140
MS.gene023667.t1 MTR_2g011590 40.764 157 92 1 172 328 3 158 1.62e-39 137
MS.gene023667.t1 MTR_1g031650 44.304 158 86 2 172 328 5 161 3.71e-36 129
MS.gene023667.t1 MTR_4g084280 40.625 160 94 1 169 328 1 159 1.64e-34 124
MS.gene023667.t1 MTR_8g464390 39.597 149 74 4 17 159 16 154 8.43e-28 113
MS.gene023667.t1 MTR_2g080950 44.828 116 56 2 17 132 16 123 7.24e-27 110
MS.gene023667.t1 MTR_6g080710 35.323 201 97 5 20 219 19 187 2.89e-26 105
MS.gene023667.t1 MTR_1g031650 42.742 124 70 1 205 328 2 124 1.41e-23 94.7
MS.gene023667.t1 MTR_1g069000 46.739 92 47 2 14 104 1 91 3.77e-21 94.4
MS.gene023667.t1 MTR_7g099830 45.455 88 47 1 14 101 1 87 1.21e-20 92.4
MS.gene023667.t1 MTR_7g020860 41.538 130 51 5 29 134 514 642 1.92e-20 92.8
MS.gene023667.t1 MTR_8g100100 35.507 138 64 3 29 142 512 648 8.10e-19 87.8
MS.gene023667.t1 MTR_8g100100 35.507 138 64 3 29 142 506 642 8.38e-19 87.8
MS.gene023667.t1 MTR_7g020860 43.220 118 42 5 32 125 517 633 9.82e-19 87.4
MS.gene023667.t1 MTR_8g067080 41.772 79 45 1 20 98 13 90 3.55e-17 82.0
MS.gene023667.t1 MTR_8g067080 41.772 79 45 1 20 98 13 90 3.72e-17 82.0
MS.gene023667.t1 MTR_8g471110 41.772 79 45 1 20 98 13 90 3.72e-17 82.0
MS.gene023667.t1 MTR_4g074170 38.532 109 55 3 29 126 491 598 5.15e-17 82.4
MS.gene023667.t1 MTR_8g067090 38.614 101 57 4 20 119 13 109 6.05e-17 81.3
MS.gene023667.t1 MTR_8g471120 38.614 101 57 4 20 119 13 109 6.05e-17 81.3
MS.gene023667.t1 MTR_3g098680 40.777 103 54 3 29 125 509 610 3.40e-16 80.1
MS.gene023667.t1 MTR_8g464390 35.398 113 57 4 53 159 1 103 9.42e-13 68.9
MS.gene023667.t1 MTR_2g080950 41.250 80 39 2 53 132 1 72 8.21e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023667.t1 AT4G21160 71.818 330 84 2 10 330 8 337 0.0 507
MS.gene023667.t1 AT4G21160 71.818 330 84 2 10 330 8 337 0.0 507
MS.gene023667.t1 AT4G21160 71.818 330 84 2 10 330 8 337 0.0 507
MS.gene023667.t1 AT4G21160 71.818 330 84 2 10 330 8 337 0.0 507
MS.gene023667.t1 AT4G05330 69.643 336 94 2 3 330 1 336 2.17e-178 497
MS.gene023667.t1 AT4G05330 69.643 336 94 2 3 330 1 336 2.17e-178 497
MS.gene023667.t1 AT4G05330 70.847 295 78 2 44 330 7 301 2.32e-157 442
MS.gene023667.t1 AT3G07940 47.774 337 151 2 17 328 47 383 1.57e-113 334
MS.gene023667.t1 AT3G07940 47.642 212 86 2 19 205 49 260 1.60e-63 202
MS.gene023667.t1 AT1G73580 43.558 163 91 1 166 328 1 162 1.02e-40 140
MS.gene023667.t1 AT5G37740 43.558 163 88 2 169 328 1 162 1.92e-40 140
MS.gene023667.t1 AT1G70790 46.753 154 81 1 173 325 6 159 2.82e-40 140
MS.gene023667.t1 AT1G70790 46.753 154 81 1 173 325 6 159 2.82e-40 140
MS.gene023667.t1 AT1G70790 46.753 154 81 1 173 325 6 159 2.82e-40 140
MS.gene023667.t1 AT3G17980 40.625 160 94 1 169 328 13 171 2.88e-39 137
MS.gene023667.t1 AT2G01540 42.208 154 88 1 173 325 6 159 2.18e-37 132
MS.gene023667.t1 AT1G70800 39.241 158 95 1 169 326 10 166 4.29e-37 131
MS.gene023667.t1 AT5G37740 41.040 173 88 3 169 328 1 172 4.42e-37 131
MS.gene023667.t1 AT1G70810 39.375 160 96 1 169 328 1 159 9.66e-37 130
MS.gene023667.t1 AT1G48590 39.375 160 96 1 169 328 6 164 6.07e-36 128
MS.gene023667.t1 AT1G48590 39.375 160 96 1 169 328 6 164 6.07e-36 128
MS.gene023667.t1 AT1G48590 39.375 160 96 1 169 328 37 195 7.61e-36 129
MS.gene023667.t1 AT1G66360 41.615 161 93 1 169 328 1 161 9.04e-36 128
MS.gene023667.t1 AT5G47710 40.606 165 85 2 169 326 1 159 1.14e-34 124
MS.gene023667.t1 AT5G47710 40.606 165 85 2 169 326 1 159 1.14e-34 124
MS.gene023667.t1 AT5G47710 40.606 165 85 2 169 326 1 159 1.14e-34 124
MS.gene023667.t1 AT5G47710 40.606 165 85 2 169 326 1 159 1.14e-34 124
MS.gene023667.t1 AT1G23140 35.000 160 103 1 169 328 1 159 2.42e-31 116
MS.gene023667.t1 AT3G17660 39.231 130 69 3 5 132 2 123 2.38e-29 111
MS.gene023667.t1 AT3G17660 39.231 130 69 3 5 132 2 123 8.18e-29 111
MS.gene023667.t1 AT3G17660 39.231 130 69 3 5 132 2 123 1.96e-28 110
MS.gene023667.t1 AT5G54310 38.406 138 75 3 5 140 2 131 4.93e-27 111
MS.gene023667.t1 AT1G70790 43.333 120 67 1 207 325 3 122 2.38e-25 99.8
MS.gene023667.t1 AT1G48590 31.250 160 77 2 169 328 37 163 5.84e-22 91.3
MS.gene023667.t1 AT3G17660 33.846 130 66 3 5 132 2 113 4.06e-20 87.8
MS.gene023667.t1 AT2G37550 44.318 88 48 1 14 101 1 87 1.45e-19 89.4
MS.gene023667.t1 AT2G37550 44.318 88 48 1 14 101 1 87 1.45e-19 89.4
MS.gene023667.t1 AT3G53710 43.182 88 49 1 14 101 1 87 1.65e-19 89.4
MS.gene023667.t1 AT3G53710 43.182 88 49 1 14 101 1 87 1.65e-19 89.4
MS.gene023667.t1 AT3G53710 43.182 88 49 1 14 101 1 87 1.65e-19 89.4
MS.gene023667.t1 AT2G35210 40.594 101 55 3 20 119 13 109 6.86e-19 86.7
MS.gene023667.t1 AT2G35210 40.594 101 55 3 20 119 13 109 1.16e-18 86.3
MS.gene023667.t1 AT5G13300 37.500 128 58 4 29 135 513 639 1.32e-18 87.4
MS.gene023667.t1 AT1G60860 35.570 149 76 5 29 158 308 455 2.30e-18 86.3
MS.gene023667.t1 AT1G60860 35.570 149 76 5 29 158 368 515 2.98e-18 85.9
MS.gene023667.t1 AT1G60860 35.570 149 76 5 29 158 479 626 3.32e-18 85.9
MS.gene023667.t1 AT1G10870 29.231 195 110 7 29 208 479 660 6.83e-18 85.1
MS.gene023667.t1 AT1G10870 30.000 200 107 8 29 208 479 665 1.21e-17 84.3
MS.gene023667.t1 AT5G46750 43.750 80 44 1 20 99 13 91 2.68e-17 82.4
MS.gene023667.t1 AT5G61980 46.053 76 38 2 29 102 510 584 8.23e-17 82.0
MS.gene023667.t1 AT4G17890 40.777 103 53 4 18 119 17 112 9.10e-17 80.9
MS.gene023667.t1 AT4G17890 39.604 101 56 3 20 119 16 112 1.25e-16 80.5
MS.gene023667.t1 AT3G17660 37.500 80 42 2 53 132 1 72 1.65e-12 65.9

Find 62 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATAGACGGTTGGAATT+TGG 0.165631 4.3:-12808244 MS.gene023667:CDS
GCCATTGCAGAATTTATTAA+AGG 0.185985 4.3:+12805160 None:intergenic
TGTAACCTTACCAAACTTAT+TGG 0.212227 4.3:+12805517 None:intergenic
AAGAAGATTGAAGGATTTAT+TGG 0.242961 4.3:-12807697 MS.gene023667:CDS
GAAGGAATGGTAGAATTTAT+TGG 0.252239 4.3:-12805845 MS.gene023667:CDS
ATTCTCCACATTCGACATTC+TGG 0.255352 4.3:+12805005 None:intergenic
GAATAAACTTACGCCCATTT+AGG 0.255700 4.3:+12807630 None:intergenic
GTAGTGCTCCGGATCCTAAA+TGG 0.293236 4.3:-12807644 MS.gene023667:CDS
TTGTCCGTTCCTCAGCAATT+TGG 0.300614 4.3:-12805541 MS.gene023667:CDS
GCAATGGCATTTGGAGATAC+TGG 0.302939 4.3:-12805145 MS.gene023667:CDS
GTTCTCGGCTGATGATATAA+TGG 0.310794 4.3:-12805206 MS.gene023667:CDS
ATAAATTCTGCAATGGCATT+TGG 0.314753 4.3:-12805154 MS.gene023667:CDS
ACAATAGACGGTTGGAATTT+GGG 0.317344 4.3:-12808243 MS.gene023667:CDS
ATCTAGTGGTTCAAAGAATA+TGG 0.320374 4.3:-12806021 MS.gene023667:intron
TTCTTCAGGTCAGCAAATAT+TGG 0.330231 4.3:-12807421 MS.gene023667:intron
GGAGTAATTTGAATCCAGTT+TGG 0.344163 4.3:-12805579 MS.gene023667:CDS
GCAATTTGGACCAATAAGTT+TGG 0.353128 4.3:-12805527 MS.gene023667:intron
ATGATATGCGTATAGGAAAA+TGG 0.354086 4.3:-12805114 MS.gene023667:CDS
TCATGACTGGCGTCTGGTCC+TGG 0.366903 4.3:+12806470 None:intergenic
GTGGATGTCTCTTGATCATT+AGG 0.379350 4.3:-12804966 None:intergenic
ATCTGCCAATTCAATTTATG+AGG 0.388056 4.3:-12806519 MS.gene023667:CDS
ATAAGTTCCTCGTTCCAAAC+TGG 0.391227 4.3:+12805565 None:intergenic
AAAAGCCTCATAAATTGAAT+TGG 0.395677 4.3:+12806514 None:intergenic
CCAAGCTTCAAAACAACATA+TGG 0.397782 4.3:+12805758 None:intergenic
CTGTTCAGACGACTGTAATA+AGG 0.399690 4.3:-12805600 MS.gene023667:CDS
TTGTATGCTTAAAATGTTGT+GGG 0.417828 4.3:-12807393 MS.gene023667:CDS
ATTTGATCATGACTTGTTCT+CGG 0.424924 4.3:-12805221 MS.gene023667:CDS
TACAGGTAAAAGAAGATTGA+AGG 0.424972 4.3:-12807706 MS.gene023667:intron
TTCTCGGCTGATGATATAAT+GGG 0.430169 4.3:-12805205 MS.gene023667:CDS
AGCATAGTCAATATCATTGA+TGG 0.443930 4.3:-12805058 MS.gene023667:CDS
TGTCTGTAACATTGGATGAA+TGG 0.468188 4.3:-12806586 MS.gene023667:CDS
CGTTCTTCATGACTGGCGTC+TGG 0.471968 4.3:+12806464 None:intergenic
AGTCAATATCATTGATGGTA+AGG 0.482666 4.3:-12805053 MS.gene023667:CDS
AAACATAACATACTTGATAC+AGG 0.485779 4.3:+12808217 None:intergenic
TAATGACAACGCGCTTATAG+AGG 0.487418 4.3:-12805083 MS.gene023667:CDS
ATAGATGCAATGATGGAAGT+TGG 0.488889 4.3:-12806551 MS.gene023667:CDS
ATGTTTGATGATATGCGTAT+AGG 0.495087 4.3:-12805121 MS.gene023667:CDS
TTGTGCTGATTGTAGTGCTC+CGG 0.495186 4.3:-12807655 MS.gene023667:CDS
AAGAACGTGCAAAATTCATC+AGG 0.500258 4.3:-12806448 MS.gene023667:intron
TAGTGCTCCGGATCCTAAAT+GGG 0.500733 4.3:-12807643 MS.gene023667:CDS
ACCTTTAATAAATTCTGCAA+TGG 0.502560 4.3:-12805161 MS.gene023667:CDS
ACTTACGCCCATTTAGGATC+CGG 0.503153 4.3:+12807636 None:intergenic
TGATGAAATAGATGCAATGA+TGG 0.538280 4.3:-12806558 MS.gene023667:CDS
AATTAAACTTAGAACTTGAG+TGG 0.550387 4.3:-12804985 MS.gene023667:CDS
GTCGATGAACAATAGACGGT+TGG 0.555087 4.3:-12808251 MS.gene023667:CDS
TTTGTATGCTTAAAATGTTG+TGG 0.556153 4.3:-12807394 MS.gene023667:CDS
TGTGGGGTGCACAGAAGTCT+TGG 0.558109 4.3:-12807376 MS.gene023667:CDS
ATTTAGCAATCAGAGATATG+AGG 0.559392 4.3:-12805790 MS.gene023667:CDS
CCGGAAGGATATACAAAACC+AGG 0.574677 4.3:-12806488 MS.gene023667:CDS
ATGGTGAAAATAGGAAGGAA+TGG 0.575850 4.3:-12805858 MS.gene023667:intron
TGGTCCAAATTGCTGAGGAA+CGG 0.581432 4.3:+12805537 None:intergenic
GATAGCTTTCGAAAATCTAG+TGG 0.590041 4.3:-12806035 MS.gene023667:CDS
GATGCAATGATGGAAGTTGG+AGG 0.591464 4.3:-12806548 MS.gene023667:CDS
TGGAATGCTGAAAGTGAAAG+TGG 0.593242 4.3:-12805825 MS.gene023667:CDS
CTGAAAGTGAAAGTGGTCAA+AGG 0.594303 4.3:-12805818 MS.gene023667:CDS
GGATGTCGATGAACAATAGA+CGG 0.602168 4.3:-12808255 MS.gene023667:CDS
TCTTGGCACTCATATATCAA+AGG 0.604306 4.3:-12807359 MS.gene023667:intron
CTTATTGGTCCAAATTGCTG+AGG 0.607175 4.3:+12805532 None:intergenic
TGTATGCTTAAAATGTTGTG+GGG 0.631760 4.3:-12807392 MS.gene023667:CDS
AAGCTCCAGAATGTCGAATG+TGG 0.636564 4.3:-12805010 MS.gene023667:CDS
TTTGAATCCAGTTTGGAACG+AGG 0.647447 4.3:-12805572 MS.gene023667:CDS
ATAGACGGTTGGAATTTGGG+AGG 0.688403 4.3:-12808240 MS.gene023667:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATTTCACACTTAAA+TGG + chr4.3:12807051-12807070 None:intergenic 15.0%
!! GATATAATCCATTAAAATTT+AGG + chr4.3:12805161-12805180 None:intergenic 15.0%
!! TGAAATAATTGAAAAACTAA+CGG - chr4.3:12805962-12805981 MS.gene023667:intron 15.0%
!!! ATGTATTGTTTTAGATATAT+TGG + chr4.3:12807852-12807871 None:intergenic 15.0%
!!! TATAATATGTATGTTTTTCA+AGG - chr4.3:12805266-12805285 MS.gene023667:intron 15.0%
!! AAACTACATAAATTGTTTAC+AGG + chr4.3:12807788-12807807 None:intergenic 20.0%
!! ATATATATATTACTACCGTA+TGG - chr4.3:12806162-12806181 MS.gene023667:intron 20.0%
!! CAAATTACATGTTTAAAAAC+AGG - chr4.3:12805378-12805397 MS.gene023667:intron 20.0%
!! GAAATAATTGAAAAACTAAC+GGG - chr4.3:12805963-12805982 MS.gene023667:intron 20.0%
!! TAAAAAAATTAGTAGGACAA+TGG + chr4.3:12806376-12806395 None:intergenic 20.0%
!! TGAATGATATTGAATATTGA+TGG - chr4.3:12807343-12807362 MS.gene023667:intron 20.0%
!! TTTCAATAGCATATACTATT+AGG - chr4.3:12807501-12807520 MS.gene023667:intron 20.0%
!! TTTCAATTATTTCAAGACAA+GGG + chr4.3:12805956-12805975 None:intergenic 20.0%
!!! AAGGATGTTCTTTTATATTT+GGG - chr4.3:12806126-12806145 MS.gene023667:CDS 20.0%
!!! CTTTCTTTTTAAATTGACAA+TGG - chr4.3:12807581-12807600 MS.gene023667:intron 20.0%
!!! TAATTTAAAAAAGAGTGTGT+TGG + chr4.3:12805124-12805143 None:intergenic 20.0%
!!! TTTTCAATTATTTCAAGACA+AGG + chr4.3:12805957-12805976 None:intergenic 20.0%
! AAAAGCCTCATAAATTGAAT+TGG + chr4.3:12806709-12806728 None:intergenic 25.0%
! AAACATAACATACTTGATAC+AGG + chr4.3:12805006-12805025 None:intergenic 25.0%
! AAGAAGATTGAAGGATTTAT+TGG - chr4.3:12805523-12805542 MS.gene023667:intron 25.0%
! AAGGAAAAACTAAACCAAAA+TGG + chr4.3:12805467-12805486 None:intergenic 25.0%
! AAGTTTCTCCAAAAAGATTA+TGG - chr4.3:12807163-12807182 MS.gene023667:intron 25.0%
! AATAAACAAAAAAGGTTGTG+TGG + chr4.3:12805622-12805641 None:intergenic 25.0%
! AATATGAGAAGAGCAAAATT+TGG + chr4.3:12806891-12806910 None:intergenic 25.0%
! AATCCATTAAAATTTAGGAG+CGG + chr4.3:12805156-12805175 None:intergenic 25.0%
! AATTAAACTTAGAACTTGAG+TGG - chr4.3:12808235-12808254 MS.gene023667:CDS 25.0%
! ACACAAATACATTCAATCAA+AGG + chr4.3:12807240-12807259 None:intergenic 25.0%
! ACCTTTAATAAATTCTGCAA+TGG - chr4.3:12808059-12808078 MS.gene023667:intron 25.0%
! ATACATACAAATGTGTATGT+GGG - chr4.3:12806001-12806020 MS.gene023667:intron 25.0%
! ATATGAGAAGAGCAAAATTT+GGG + chr4.3:12806890-12806909 None:intergenic 25.0%
! ATATTGACATTTATGATTGC+AGG - chr4.3:12807069-12807088 MS.gene023667:intron 25.0%
! TTCATATACAAGACATTGTA+AGG + chr4.3:12807933-12807952 None:intergenic 25.0%
! TTCTTACTATGAATAGATTG+AGG - chr4.3:12806439-12806458 MS.gene023667:intron 25.0%
! TTGTATGCTTAAAATGTTGT+GGG - chr4.3:12805827-12805846 MS.gene023667:CDS 25.0%
! TTTGTATGCTTAAAATGTTG+TGG - chr4.3:12805826-12805845 MS.gene023667:CDS 25.0%
!! AAAGCTATCCATAATCTTTT+TGG + chr4.3:12807174-12807193 None:intergenic 25.0%
!! AATTTATGAGGCTTTTATTC+CGG - chr4.3:12806713-12806732 MS.gene023667:intron 25.0%
!! GAAGGATGTTCTTTTATATT+TGG - chr4.3:12806125-12806144 MS.gene023667:CDS 25.0%
!! GTTTTCATGAGTGATTTTAA+TGG - chr4.3:12807315-12807334 MS.gene023667:intron 25.0%
!!! ACCTTTTTTGTTTATTGTCA+TGG - chr4.3:12805626-12805645 MS.gene023667:intron 25.0%
!!! ATTGCACTTTGAAATTCAAA+AGG - chr4.3:12806414-12806433 MS.gene023667:intron 25.0%
!!! GTATTGGTTAAAATCTTTGT+CGG - chr4.3:12805335-12805354 MS.gene023667:intron 25.0%
!!! GTCCTACTAATTTTTTTAGA+CGG - chr4.3:12806378-12806397 MS.gene023667:intron 25.0%
!!! TACAAATTGTGTTGGTTATA+TGG - chr4.3:12805309-12805328 MS.gene023667:intron 25.0%
!!! TCCTACTAATTTTTTTAGAC+GGG - chr4.3:12806379-12806398 MS.gene023667:intron 25.0%
!!! TGAATATTGATGGTGAAAAT+AGG - chr4.3:12807353-12807372 MS.gene023667:intron 25.0%
AACAACCAACCATTCTTATA+TGG - chr4.3:12806082-12806101 MS.gene023667:CDS 30.0%
AACGATTTAAGGAAAAGTAG+TGG - chr4.3:12805405-12805424 MS.gene023667:intron 30.0%
ACAAAATCTGACAAGGAAAA+AGG + chr4.3:12806617-12806636 None:intergenic 30.0%
AGCATAGTCAATATCATTGA+TGG - chr4.3:12808162-12808181 MS.gene023667:intron 30.0%
AGTGCTAAACTTAATGATCT+AGG - chr4.3:12806264-12806283 MS.gene023667:intron 30.0%
ATAAATTCTGCAATGGCATT+TGG - chr4.3:12808066-12808085 MS.gene023667:intron 30.0%
ATCTAGTGGTTCAAAGAATA+TGG - chr4.3:12807199-12807218 MS.gene023667:intron 30.0%
ATCTGCCAATTCAATTTATG+AGG - chr4.3:12806701-12806720 MS.gene023667:intron 30.0%
ATGATATGCGTATAGGAAAA+TGG - chr4.3:12808106-12808125 MS.gene023667:intron 30.0%
ATTTAGCAATCAGAGATATG+AGG - chr4.3:12807430-12807449 MS.gene023667:intron 30.0%
CAGTATGCTAATTCAACTTA+TGG + chr4.3:12807266-12807285 None:intergenic 30.0%
CATACATACAAATGTGTATG+TGG - chr4.3:12806000-12806019 MS.gene023667:intron 30.0%
GAAGGAATGGTAGAATTTAT+TGG - chr4.3:12807375-12807394 MS.gene023667:CDS 30.0%
GAGGATAAATTAGTAGTATG+TGG + chr4.3:12806332-12806351 None:intergenic 30.0%
GCCATGACAATAAACAAAAA+AGG + chr4.3:12805630-12805649 None:intergenic 30.0%
GCCATTGCAGAATTTATTAA+AGG + chr4.3:12808063-12808082 None:intergenic 30.0%
GTGCTAAACTTAATGATCTA+GGG - chr4.3:12806265-12806284 MS.gene023667:intron 30.0%
TAATAATAGTCCATTGTGCT+TGG - chr4.3:12806947-12806966 MS.gene023667:intron 30.0%
TAATTTATCCTCCATTCCAT+TGG - chr4.3:12806340-12806359 MS.gene023667:intron 30.0%
TACAAATGTGACAGATTTCT+TGG + chr4.3:12805733-12805752 None:intergenic 30.0%
TACAGGTAAAAGAAGATTGA+AGG - chr4.3:12805514-12805533 MS.gene023667:intron 30.0%
TCCCGTCTAAAAAAATTAGT+AGG + chr4.3:12806383-12806402 None:intergenic 30.0%
TCTATACATGAATAGAATCG+AGG - chr4.3:12806558-12806577 MS.gene023667:CDS 30.0%
TGATGAAATAGATGCAATGA+TGG - chr4.3:12806662-12806681 MS.gene023667:intron 30.0%
TGTAACCTTACCAAACTTAT+TGG + chr4.3:12807706-12807725 None:intergenic 30.0%
TGTATGCTTAAAATGTTGTG+GGG - chr4.3:12805828-12805847 MS.gene023667:CDS 30.0%
TGTTGATGTACAAATTGTGT+TGG - chr4.3:12805301-12805320 MS.gene023667:intron 30.0%
! AAATGGAACGTTGATTGAAT+TGG + chr4.3:12807034-12807053 None:intergenic 30.0%
! ACTTTTTGTCACTGAAAAGT+AGG - chr4.3:12806831-12806850 MS.gene023667:intron 30.0%
! AGTCAATATCATTGATGGTA+AGG - chr4.3:12808167-12808186 MS.gene023667:intron 30.0%
! ATGTTTGATGATATGCGTAT+AGG - chr4.3:12808099-12808118 MS.gene023667:intron 30.0%
! GGAACTAGATTTTGCATTAT+AGG + chr4.3:12807767-12807786 None:intergenic 30.0%
! GTTGGTTATATGGTTTGTAT+TGG - chr4.3:12805319-12805338 MS.gene023667:intron 30.0%
! TATCCGCTCCTAAATTTTAA+TGG - chr4.3:12805150-12805169 MS.gene023667:CDS 30.0%
! TCAGATTTTGTCTGTAACAT+TGG - chr4.3:12806626-12806645 MS.gene023667:intron 30.0%
! TTAATGATCTAGGGTATAAG+AGG - chr4.3:12806274-12806293 MS.gene023667:intron 30.0%
! TTTAAAAAAGAGTGTGTTGG+TGG + chr4.3:12805121-12805140 None:intergenic 30.0%
!! ACAAATGTCTTTGAAGTACT+TGG - chr4.3:12805205-12805224 MS.gene023667:CDS 30.0%
!! ATTTGATCATGACTTGTTCT+CGG - chr4.3:12807999-12808018 MS.gene023667:intron 30.0%
!! TATTGATGGTGAAAATAGGA+AGG - chr4.3:12807357-12807376 MS.gene023667:intron 30.0%
!!! GTCGGAAATAATTTTTTCGA+AGG - chr4.3:12805353-12805372 MS.gene023667:intron 30.0%
!!! TTTTTTTGAACTGCTTCTTC+AGG - chr4.3:12805785-12805804 MS.gene023667:CDS 30.0%
AAACAGGCATGAACGATTTA+AGG - chr4.3:12805394-12805413 MS.gene023667:intron 35.0%
AACAATAGACGGTTGGAATT+TGG - chr4.3:12804976-12804995 MS.gene023667:CDS 35.0%
AACATGCTTCATTGTATTGC+AGG - chr4.3:12807972-12807991 MS.gene023667:intron 35.0%
AAGAACGTGCAAAATTCATC+AGG - chr4.3:12806772-12806791 MS.gene023667:intron 35.0%
ACAATAGACGGTTGGAATTT+GGG - chr4.3:12804977-12804996 MS.gene023667:CDS 35.0%
ACCAATCATTCAACTTCTCA+AGG + chr4.3:12805486-12805505 None:intergenic 35.0%
ATGCTTGTGCAATAGTTTGA+AGG - chr4.3:12806107-12806126 MS.gene023667:CDS 35.0%
ATGGTGAAAATAGGAAGGAA+TGG - chr4.3:12807362-12807381 MS.gene023667:CDS 35.0%
ATTGAAAACAACCAACCTGT+TGG + chr4.3:12807488-12807507 None:intergenic 35.0%
CAAGCATAGCCATATAAGAA+TGG + chr4.3:12806094-12806113 None:intergenic 35.0%
CAATGGTTAGTGATTACCAA+TGG + chr4.3:12806359-12806378 None:intergenic 35.0%
CATAGCCATATAAGAATGGT+TGG + chr4.3:12806090-12806109 None:intergenic 35.0%
CCAAGCTTCAAAACAACATA+TGG + chr4.3:12807465-12807484 None:intergenic 35.0%
GAATAAACTTACGCCCATTT+AGG + chr4.3:12805593-12805612 None:intergenic 35.0%
GATAGCTTTCGAAAATCTAG+TGG - chr4.3:12807185-12807204 MS.gene023667:intron 35.0%
GCAATTTGGACCAATAAGTT+TGG - chr4.3:12807693-12807712 MS.gene023667:CDS 35.0%
GGAGTAATTTGAATCCAGTT+TGG - chr4.3:12807641-12807660 MS.gene023667:intron 35.0%
GTTACAGACAAAATCTGACA+AGG + chr4.3:12806624-12806643 None:intergenic 35.0%
GTTAGATCGATGGATAAGAT+AGG - chr4.3:12806479-12806498 MS.gene023667:CDS 35.0%
GTTAGTGATTACCAATGGAA+TGG + chr4.3:12806354-12806373 None:intergenic 35.0%
GTTCATGGTAGCATAAAAAG+TGG - chr4.3:12807006-12807025 MS.gene023667:intron 35.0%
TAGGTAGAATGTAAGACAAG+AGG - chr4.3:12806498-12806517 MS.gene023667:CDS 35.0%
TCCTTGAGAAGTTGAATGAT+TGG - chr4.3:12805482-12805501 MS.gene023667:intron 35.0%
TCTTGGCACTCATATATCAA+AGG - chr4.3:12805861-12805880 MS.gene023667:intron 35.0%
TGAGAAGTTGAATGATTGGT+AGG - chr4.3:12805486-12805505 MS.gene023667:intron 35.0%
TGTAAGTTGTGTTAGATCGA+TGG - chr4.3:12806469-12806488 MS.gene023667:CDS 35.0%
TGTCTGTAACATTGGATGAA+TGG - chr4.3:12806634-12806653 MS.gene023667:intron 35.0%
TTAGAGCAACATTACGTATG+AGG - chr4.3:12807887-12807906 MS.gene023667:intron 35.0%
TTCTCGGCTGATGATATAAT+GGG - chr4.3:12808015-12808034 MS.gene023667:intron 35.0%
TTCTTCAGGTCAGCAAATAT+TGG - chr4.3:12805799-12805818 MS.gene023667:CDS 35.0%
TTGGACCAATAAGTTTGGTA+AGG - chr4.3:12807698-12807717 MS.gene023667:CDS 35.0%
! ATAGATGCAATGATGGAAGT+TGG - chr4.3:12806669-12806688 MS.gene023667:intron 35.0%
! ATGATTGGTAGGTCTTTTAC+AGG - chr4.3:12805497-12805516 MS.gene023667:intron 35.0%
! TGTGACATGAAAAGCCATTT+TGG - chr4.3:12805450-12805469 MS.gene023667:intron 35.0%
!! TCATGGCCTTTCTAAAACTA+AGG - chr4.3:12805643-12805662 MS.gene023667:intron 35.0%
!!! CCATATGTTGTTTTGAAGCT+TGG - chr4.3:12807462-12807481 MS.gene023667:intron 35.0%
!!! CTCAGACCTTAGTTTTAGAA+AGG + chr4.3:12805652-12805671 None:intergenic 35.0%
AGTGATTACCAATGGAATGG+AGG + chr4.3:12806351-12806370 None:intergenic 40.0%
ATAAGTTCCTCGTTCCAAAC+TGG + chr4.3:12807658-12807677 None:intergenic 40.0%
ATGCTTCATTGTATTGCAGG+AGG - chr4.3:12807975-12807994 MS.gene023667:intron 40.0%
ATTCTCCACATTCGACATTC+TGG + chr4.3:12808218-12808237 None:intergenic 40.0%
CAATGCTTAACCAAGCACAA+TGG + chr4.3:12806960-12806979 None:intergenic 40.0%
CATACAAATGTGTATGTGGG+TGG - chr4.3:12806004-12806023 MS.gene023667:intron 40.0%
CTGAAAGTGAAAGTGGTCAA+AGG - chr4.3:12807402-12807421 MS.gene023667:CDS 40.0%
CTGTTCAGACGACTGTAATA+AGG - chr4.3:12807620-12807639 MS.gene023667:intron 40.0%
CTTATTGGTCCAAATTGCTG+AGG + chr4.3:12807691-12807710 None:intergenic 40.0%
GCTGAAGACAAAGATTCATC+TGG + chr4.3:12806868-12806887 None:intergenic 40.0%
GTTCTCGGCTGATGATATAA+TGG - chr4.3:12808014-12808033 MS.gene023667:intron 40.0%
TAATGACAACGCGCTTATAG+AGG - chr4.3:12808137-12808156 MS.gene023667:intron 40.0%
TGGAATGCTGAAAGTGAAAG+TGG - chr4.3:12807395-12807414 MS.gene023667:CDS 40.0%
! ATGATCTAGGGTATAAGAGG+TGG - chr4.3:12806277-12806296 MS.gene023667:intron 40.0%
! ATGGCTTTTCATGTCACAAG+TGG + chr4.3:12805448-12805467 None:intergenic 40.0%
! TATGAGGCTTTTATTCCGGA+AGG - chr4.3:12806717-12806736 MS.gene023667:intron 40.0%
! TTTGAATCCAGTTTGGAACG+AGG - chr4.3:12807648-12807667 MS.gene023667:CDS 40.0%
! TTTTGCACGTTCTTCATGAC+TGG + chr4.3:12806766-12806785 None:intergenic 40.0%
!! TGTAAGACAAGAGGAGTGTT+AGG - chr4.3:12806507-12806526 MS.gene023667:CDS 40.0%
!!! CCTGGTTTTGTATATCCTTC+CGG + chr4.3:12806735-12806754 None:intergenic 40.0%
AAGCTCCAGAATGTCGAATG+TGG - chr4.3:12808210-12808229 MS.gene023667:intron 45.0%
ATAGACGGTTGGAATTTGGG+AGG - chr4.3:12804980-12804999 MS.gene023667:CDS 45.0%
CCGCAATCATGTATGCCATA+CGG + chr4.3:12806180-12806199 None:intergenic 45.0%
CCGGAAGGATATACAAAACC+AGG - chr4.3:12806732-12806751 MS.gene023667:intron 45.0%
CCGTATGGCATACATGATTG+CGG - chr4.3:12806177-12806196 MS.gene023667:intron 45.0%
CGACATTGCGATGTTGTTCA+TGG - chr4.3:12806991-12807010 MS.gene023667:intron 45.0%
GCAATGGCATTTGGAGATAC+TGG - chr4.3:12808075-12808094 MS.gene023667:intron 45.0%
GTCGATGAACAATAGACGGT+TGG - chr4.3:12804969-12804988 MS.gene023667:CDS 45.0%
TAGTGCTCCGGATCCTAAAT+GGG - chr4.3:12805577-12805596 MS.gene023667:CDS 45.0%
TGGTCCAAATTGCTGAGGAA+CGG + chr4.3:12807686-12807705 None:intergenic 45.0%
TTGTCCGTTCCTCAGCAATT+TGG - chr4.3:12807679-12807698 MS.gene023667:CDS 45.0%
! ACTTACGCCCATTTAGGATC+CGG + chr4.3:12805587-12805606 None:intergenic 45.0%
! GATGCAATGATGGAAGTTGG+AGG - chr4.3:12806672-12806691 MS.gene023667:intron 45.0%
!! TTGTGCTGATTGTAGTGCTC+CGG - chr4.3:12805565-12805584 MS.gene023667:CDS 45.0%
!!! TGTTTTGAAGCTTGGCCAAC+AGG - chr4.3:12807470-12807489 MS.gene023667:intron 45.0%
GTAGTGCTCCGGATCCTAAA+TGG - chr4.3:12805576-12805595 MS.gene023667:CDS 50.0%
TTGAAGCTTGGCCAACAGGT+TGG - chr4.3:12807474-12807493 MS.gene023667:intron 50.0%
CGTTCTTCATGACTGGCGTC+TGG + chr4.3:12806759-12806778 None:intergenic 55.0%
TGTGGGGTGCACAGAAGTCT+TGG - chr4.3:12805844-12805863 MS.gene023667:CDS 55.0%
TCATGACTGGCGTCTGGTCC+TGG + chr4.3:12806753-12806772 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 12804967 12808275 12804967 ID=MS.gene023667
chr4.3 mRNA 12804967 12808275 12804967 ID=MS.gene023667.t1;Parent=MS.gene023667
chr4.3 exon 12808230 12808275 12808230 ID=MS.gene023667.t1.exon1;Parent=MS.gene023667.t1
chr4.3 CDS 12808230 12808275 12808230 ID=cds.MS.gene023667.t1;Parent=MS.gene023667.t1
chr4.3 exon 12807642 12807723 12807642 ID=MS.gene023667.t1.exon2;Parent=MS.gene023667.t1
chr4.3 CDS 12807642 12807723 12807642 ID=cds.MS.gene023667.t1;Parent=MS.gene023667.t1
chr4.3 exon 12807360 12807435 12807360 ID=MS.gene023667.t1.exon3;Parent=MS.gene023667.t1
chr4.3 CDS 12807360 12807435 12807360 ID=cds.MS.gene023667.t1;Parent=MS.gene023667.t1
chr4.3 exon 12806449 12806612 12806449 ID=MS.gene023667.t1.exon4;Parent=MS.gene023667.t1
chr4.3 CDS 12806449 12806612 12806449 ID=cds.MS.gene023667.t1;Parent=MS.gene023667.t1
chr4.3 exon 12806022 12806151 12806022 ID=MS.gene023667.t1.exon5;Parent=MS.gene023667.t1
chr4.3 CDS 12806022 12806151 12806022 ID=cds.MS.gene023667.t1;Parent=MS.gene023667.t1
chr4.3 exon 12805751 12805867 12805751 ID=MS.gene023667.t1.exon6;Parent=MS.gene023667.t1
chr4.3 CDS 12805751 12805867 12805751 ID=cds.MS.gene023667.t1;Parent=MS.gene023667.t1
chr4.3 exon 12805528 12805623 12805528 ID=MS.gene023667.t1.exon7;Parent=MS.gene023667.t1
chr4.3 CDS 12805528 12805623 12805528 ID=cds.MS.gene023667.t1;Parent=MS.gene023667.t1
chr4.3 exon 12804967 12805248 12804967 ID=MS.gene023667.t1.exon8;Parent=MS.gene023667.t1
chr4.3 CDS 12804967 12805248 12804967 ID=cds.MS.gene023667.t1;Parent=MS.gene023667.t1
Gene Sequence

>MS.gene023667

ATGTCGATGAACAATAGACGGTTGGAATTTGGGAGGCCTGTATCAAGTATGTTATGTTTCTTATTACACAACATTCTCTTGCATTTAGCTAGTTTACTCTTATCAAAATTCGATATATACTCTCACATTTATCAGTAATTTTTTTAATTATCCACCAACACACTCTTTTTTAAATTAAGTGTTTATCCGCTCCTAAATTTTAATGGATTATATCACAAAGCTTTCAGTTGCTAATCTTACAAATGTCTTTGAAGTACTTGGTAAGAAACATAAAAATCTAACATTTCATGCTCACAGTATATAATATGTATGTTTTTCAAGGACACAAGTTATTTGTTGATGTACAAATTGTGTTGGTTATATGGTTTGTATTGGTTAAAATCTTTGTCGGAAATAATTTTTTCGAAGGCTCAAATTACATGTTTAAAAACAGGCATGAACGATTTAAGGAAAAGTAGTGGTTGCTTATTTCATATGTCCACTTGTGACATGAAAAGCCATTTTGGTTTAGTTTTTCCTTGAGAAGTTGAATGATTGGTAGGTCTTTTACAGGTAAAAGAAGATTGAAGGATTTATTGGTTCAAAAAGATAATCGCTTTTGTGCTGATTGTAGTGCTCCGGATCCTAAATGGGCGTAAGTTTATTCACTTATCCACACAACCTTTTTTGTTTATTGTCATGGCCTTTCTAAAACTAAGGTCTGAGAGTCATGTTTTTCTGTGTAATCAGATTATGAGATATATTAGTGTAATTAACTTATTCTCCAAGAAATCTGTCACATTTGTAATGTATATTAACTTTTTTTAGTTGAAGTTAAATTTTTTTGAACTGCTTCTTCAGGTCAGCAAATATTGGAGTTTTTGTATGCTTAAAATGTTGTGGGGTGCACAGAAGTCTTGGCACTCATATATCAAAGGTAAATCATTCACGATCTTTTAATTAAAAAACATTTTATCTTTATCGATGAGAAAAATTTAAACTGAGTTCCCTTGTCTTGAAATAATTGAAAAACTAACGGGATATATACATACAGCATACATACAAATGTGTATGTGGGTGGATAGATACATATATAGCTAATATTTTTCTTTTGTTTGAACTTAATTTAATGAGAAAACAACCAACCATTCTTATATGGCTATGCTTGTGCAATAGTTTGAAGGATGTTCTTTTATATTTGGGTGCATTTAAAAAAATATATATATTACTACCGTATGGCATACATGATTGCGGTGAAGCATTATTCTTAGAACTTATATTAGCACGTGATGTCTTCTGAAATATGAAATTCAGACAAAGTGCTAAACTTAATGATCTAGGGTATAAGAGGTGGACTCTTCGCAAATAAGTGTTTTTATTTTTCCACATACTACTAATTTATCCTCCATTCCATTGGTAATCACTAACCATTGTCCTACTAATTTTTTTAGACGGGAAAACATGTTATATTGCACTTTGAAATTCAAAAGGATTTCTTACTATGAATAGATTGAGGTTGCTTGTGTAAGTTGTGTTAGATCGATGGATAAGATAGGTAGAATGTAAGACAAGAGGAGTGTTAGGAACACTCTCTTTTCAACACTCTCTAATCTCTATACATGAATAGAATCGAGGTTGCTTGTTATGCATTAAATCACTGAGACGTTTCCTTTTTCCTTGTCAGATTTTGTCTGTAACATTGGATGAATGGTCAAATGATGAAATAGATGCAATGATGGAAGTTGGAGGAAATGCATCTGCCAATTCAATTTATGAGGCTTTTATTCCGGAAGGATATACAAAACCAGGACCAGACGCCAGTCATGAAGAACGTGCAAAATTCATCAGGTAAGACATTCTTACATTTATATTATAAATTTGTTACACTTTTTGTCACTGAAAAGTAGGTAATGATACATCCAGATGAATCTTTGTCTTCAGCCCAAATTTTGCTCTTCTCATATTTATTGTTTTGCAACTCTTATATAGTGTTACTCTTTTTAATAATAGTCCATTGTGCTTGGTTAAGCATTGACTAATTTACACGACATTGCGATGTTGTTCATGGTAGCATAAAAAGTGGTACCAATTCAATCAACGTTCCATTTAAGTGTGAAATTTTAATATTGACATTTATGATTGCAGGTCAAAGTATGAGCGTCAAGAATTTTTGAAACAAAGTTTGCGCATTTTATCAACAAAAAGCAAACGTCAAACAAGTTTCTCCAAAAAGATTATGGATAGCTTTCGAAAATCTAGTGGTTCAAAGAATATGGTAATTATATTTAGTTCCTTTGATTGAATGTATTTGTGTTGACCATAAGTTGAATTAGCATACTGATGCAATGAAATTGAAATGAAATGAAATTGTTTTCATGAGTGATTTTAATGGATGTTTGAATGATATTGAATATTGATGGTGAAAATAGGAAGGAATGGTAGAATTTATTGGAATGCTGAAAGTGAAAGTGGTCAAAGGCACAAATTTAGCAATCAGAGATATGAGGACAAGTGATCCATATGTTGTTTTGAAGCTTGGCCAACAGGTTGGTTGTTTTCAATAGCATATACTATTAGGAAACTTTTTCTCTTTATTATTTTATTATTTTAGCTGATGAATAATATATGTTGATAACTTTCTTTTTAAATTGACAATGGTGTTATTGCATTCAGACTGTTCAGACGACTGTAATAAGGAGTAATTTGAATCCAGTTTGGAACGAGGAACTTATGTTGTCCGTTCCTCAGCAATTTGGACCAATAAGTTTGGTAAGGTTACATTTTATCGTGTCTAGTTAAAAACACATTTTTTGTTTATCCTATAATGCAAAATCTAGTTCCTGTAAACAATTTATGTAGTTTGCTTGCTATTTATTTGACTCTCGCAAACTAGATTCTAGCAACCAATATATCTAAAACAATACATAATGTAATGTATTGCTTAGAGCAACATTACGTATGAGGAGATGATTCAATATTTCAATCCTTACAATGTCTTGTATATGAAAATGAGACTTAATATTGACAACATGCTTCATTGTATTGCAGGAGGTATTTGATCATGACTTGTTCTCGGCTGATGATATAATGGGAGAAGCGCAGATTGATCTTCAACCTTTAATAAATTCTGCAATGGCATTTGGAGATACTGGAATGTTTGATGATATGCGTATAGGAAAATGGCTGAAATCTAATGACAACGCGCTTATAGAGGATAGCATAGTCAATATCATTGATGGTAAGGTTAAACAAGAGATGTTTATTAAGCTCCAGAATGTCGAATGTGGAGAATTAAACTTAGAACTTGAGTGGATGTCTCTTGATCATTAG

Protein sequence

>MS.gene023667.t1

MSMNNRRLEFGRPVSSKRRLKDLLVQKDNRFCADCSAPDPKWASANIGVFVCLKCCGVHRSLGTHISKILSVTLDEWSNDEIDAMMEVGGNASANSIYEAFIPEGYTKPGPDASHEERAKFIRSKYERQEFLKQSLRILSTKSKRQTSFSKKIMDSFRKSSGSKNMEGMVEFIGMLKVKVVKGTNLAIRDMRTSDPYVVLKLGQQTVQTTVIRSNLNPVWNEELMLSVPQQFGPISLEVFDHDLFSADDIMGEAQIDLQPLINSAMAFGDTGMFDDMRIGKWLKSNDNALIEDSIVNIIDGKVKQEMFIKLQNVECGELNLELEWMSLDH