AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27907


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27907.t1 MTR_8g088320 97.819 321 7 0 10 330 2 322 0.0 654
MS.gene27907.t1 MTR_2g030230 78.419 329 69 2 2 330 3 329 0.0 537
MS.gene27907.t1 MTR_3g017500 45.559 349 152 3 17 328 21 368 2.19e-112 331
MS.gene27907.t1 MTR_3g017500 45.559 349 152 3 17 328 51 398 8.08e-112 330
MS.gene27907.t1 MTR_8g038400 44.571 350 157 2 16 328 16 365 2.86e-109 323
MS.gene27907.t1 MTR_8g107340 39.205 176 106 1 153 328 1 175 5.33e-42 144
MS.gene27907.t1 MTR_6g069470 43.750 160 89 1 169 328 13 171 5.40e-42 144
MS.gene27907.t1 MTR_2g027100 45.783 166 77 2 169 327 1 160 6.61e-41 140
MS.gene27907.t1 MTR_3g067585 43.125 160 90 1 169 328 1 159 1.31e-40 140
MS.gene27907.t1 MTR_2g011590 40.764 157 92 1 172 328 3 158 1.62e-39 137
MS.gene27907.t1 MTR_1g031650 44.304 158 86 2 172 328 5 161 3.71e-36 129
MS.gene27907.t1 MTR_4g084280 40.625 160 94 1 169 328 1 159 1.64e-34 124
MS.gene27907.t1 MTR_8g464390 39.597 149 74 4 17 159 16 154 8.43e-28 113
MS.gene27907.t1 MTR_2g080950 44.828 116 56 2 17 132 16 123 7.24e-27 110
MS.gene27907.t1 MTR_6g080710 35.323 201 97 5 20 219 19 187 2.89e-26 105
MS.gene27907.t1 MTR_1g031650 42.742 124 70 1 205 328 2 124 1.41e-23 94.7
MS.gene27907.t1 MTR_1g069000 46.739 92 47 2 14 104 1 91 3.77e-21 94.4
MS.gene27907.t1 MTR_7g099830 45.455 88 47 1 14 101 1 87 1.21e-20 92.4
MS.gene27907.t1 MTR_7g020860 41.538 130 51 5 29 134 514 642 1.92e-20 92.8
MS.gene27907.t1 MTR_8g100100 35.507 138 64 3 29 142 512 648 8.10e-19 87.8
MS.gene27907.t1 MTR_8g100100 35.507 138 64 3 29 142 506 642 8.38e-19 87.8
MS.gene27907.t1 MTR_7g020860 43.220 118 42 5 32 125 517 633 9.82e-19 87.4
MS.gene27907.t1 MTR_8g067080 41.772 79 45 1 20 98 13 90 3.55e-17 82.0
MS.gene27907.t1 MTR_8g067080 41.772 79 45 1 20 98 13 90 3.72e-17 82.0
MS.gene27907.t1 MTR_8g471110 41.772 79 45 1 20 98 13 90 3.72e-17 82.0
MS.gene27907.t1 MTR_4g074170 38.532 109 55 3 29 126 491 598 5.15e-17 82.4
MS.gene27907.t1 MTR_8g067090 38.614 101 57 4 20 119 13 109 6.05e-17 81.3
MS.gene27907.t1 MTR_8g471120 38.614 101 57 4 20 119 13 109 6.05e-17 81.3
MS.gene27907.t1 MTR_3g098680 40.777 103 54 3 29 125 509 610 3.40e-16 80.1
MS.gene27907.t1 MTR_8g464390 35.398 113 57 4 53 159 1 103 9.42e-13 68.9
MS.gene27907.t1 MTR_2g080950 41.250 80 39 2 53 132 1 72 8.21e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27907.t1 AT4G21160 71.818 330 84 2 10 330 8 337 0.0 507
MS.gene27907.t1 AT4G21160 71.818 330 84 2 10 330 8 337 0.0 507
MS.gene27907.t1 AT4G21160 71.818 330 84 2 10 330 8 337 0.0 507
MS.gene27907.t1 AT4G21160 71.818 330 84 2 10 330 8 337 0.0 507
MS.gene27907.t1 AT4G05330 69.643 336 94 2 3 330 1 336 2.17e-178 497
MS.gene27907.t1 AT4G05330 69.643 336 94 2 3 330 1 336 2.17e-178 497
MS.gene27907.t1 AT4G05330 70.847 295 78 2 44 330 7 301 2.32e-157 442
MS.gene27907.t1 AT3G07940 47.774 337 151 2 17 328 47 383 1.57e-113 334
MS.gene27907.t1 AT3G07940 47.642 212 86 2 19 205 49 260 1.60e-63 202
MS.gene27907.t1 AT1G73580 43.558 163 91 1 166 328 1 162 1.02e-40 140
MS.gene27907.t1 AT5G37740 43.558 163 88 2 169 328 1 162 1.92e-40 140
MS.gene27907.t1 AT1G70790 46.753 154 81 1 173 325 6 159 2.82e-40 140
MS.gene27907.t1 AT1G70790 46.753 154 81 1 173 325 6 159 2.82e-40 140
MS.gene27907.t1 AT1G70790 46.753 154 81 1 173 325 6 159 2.82e-40 140
MS.gene27907.t1 AT3G17980 40.625 160 94 1 169 328 13 171 2.88e-39 137
MS.gene27907.t1 AT2G01540 42.208 154 88 1 173 325 6 159 2.18e-37 132
MS.gene27907.t1 AT1G70800 39.241 158 95 1 169 326 10 166 4.29e-37 131
MS.gene27907.t1 AT5G37740 41.040 173 88 3 169 328 1 172 4.42e-37 131
MS.gene27907.t1 AT1G70810 39.375 160 96 1 169 328 1 159 9.66e-37 130
MS.gene27907.t1 AT1G48590 39.375 160 96 1 169 328 6 164 6.07e-36 128
MS.gene27907.t1 AT1G48590 39.375 160 96 1 169 328 6 164 6.07e-36 128
MS.gene27907.t1 AT1G48590 39.375 160 96 1 169 328 37 195 7.61e-36 129
MS.gene27907.t1 AT1G66360 41.615 161 93 1 169 328 1 161 9.04e-36 128
MS.gene27907.t1 AT5G47710 40.606 165 85 2 169 326 1 159 1.14e-34 124
MS.gene27907.t1 AT5G47710 40.606 165 85 2 169 326 1 159 1.14e-34 124
MS.gene27907.t1 AT5G47710 40.606 165 85 2 169 326 1 159 1.14e-34 124
MS.gene27907.t1 AT5G47710 40.606 165 85 2 169 326 1 159 1.14e-34 124
MS.gene27907.t1 AT1G23140 35.000 160 103 1 169 328 1 159 2.42e-31 116
MS.gene27907.t1 AT3G17660 39.231 130 69 3 5 132 2 123 2.38e-29 111
MS.gene27907.t1 AT3G17660 39.231 130 69 3 5 132 2 123 8.18e-29 111
MS.gene27907.t1 AT3G17660 39.231 130 69 3 5 132 2 123 1.96e-28 110
MS.gene27907.t1 AT5G54310 38.406 138 75 3 5 140 2 131 4.93e-27 111
MS.gene27907.t1 AT1G70790 43.333 120 67 1 207 325 3 122 2.38e-25 99.8
MS.gene27907.t1 AT1G48590 31.250 160 77 2 169 328 37 163 5.84e-22 91.3
MS.gene27907.t1 AT3G17660 33.846 130 66 3 5 132 2 113 4.06e-20 87.8
MS.gene27907.t1 AT2G37550 44.318 88 48 1 14 101 1 87 1.45e-19 89.4
MS.gene27907.t1 AT2G37550 44.318 88 48 1 14 101 1 87 1.45e-19 89.4
MS.gene27907.t1 AT3G53710 43.182 88 49 1 14 101 1 87 1.65e-19 89.4
MS.gene27907.t1 AT3G53710 43.182 88 49 1 14 101 1 87 1.65e-19 89.4
MS.gene27907.t1 AT3G53710 43.182 88 49 1 14 101 1 87 1.65e-19 89.4
MS.gene27907.t1 AT2G35210 40.594 101 55 3 20 119 13 109 6.86e-19 86.7
MS.gene27907.t1 AT2G35210 40.594 101 55 3 20 119 13 109 1.16e-18 86.3
MS.gene27907.t1 AT5G13300 37.500 128 58 4 29 135 513 639 1.32e-18 87.4
MS.gene27907.t1 AT1G60860 35.570 149 76 5 29 158 308 455 2.30e-18 86.3
MS.gene27907.t1 AT1G60860 35.570 149 76 5 29 158 368 515 2.98e-18 85.9
MS.gene27907.t1 AT1G60860 35.570 149 76 5 29 158 479 626 3.32e-18 85.9
MS.gene27907.t1 AT1G10870 29.231 195 110 7 29 208 479 660 6.83e-18 85.1
MS.gene27907.t1 AT1G10870 30.000 200 107 8 29 208 479 665 1.21e-17 84.3
MS.gene27907.t1 AT5G46750 43.750 80 44 1 20 99 13 91 2.68e-17 82.4
MS.gene27907.t1 AT5G61980 46.053 76 38 2 29 102 510 584 8.23e-17 82.0
MS.gene27907.t1 AT4G17890 40.777 103 53 4 18 119 17 112 9.10e-17 80.9
MS.gene27907.t1 AT4G17890 39.604 101 56 3 20 119 16 112 1.25e-16 80.5
MS.gene27907.t1 AT3G17660 37.500 80 42 2 53 132 1 72 1.65e-12 65.9

Find 62 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATAGACGGTTGGAATT+TGG 0.165631 4.1:-12249596 MS.gene27907:CDS
GCCATTGCAGAATTTATTAA+AGG 0.185985 4.1:+12246512 None:intergenic
TGTAACCTTACCAAACTTAT+TGG 0.212227 4.1:+12246869 None:intergenic
AAGAAGATTGAAGGATTTAT+TGG 0.242961 4.1:-12249049 MS.gene27907:CDS
GAAGGAATGGTAGAATTTAT+TGG 0.252239 4.1:-12247197 MS.gene27907:CDS
ATTCTCCACATTCGACATTC+TGG 0.255352 4.1:+12246357 None:intergenic
GAATAAACTTACGCCCATTT+AGG 0.255700 4.1:+12248982 None:intergenic
GTAGTGCTCCGGATCCTAAA+TGG 0.293236 4.1:-12248996 MS.gene27907:CDS
TTGTCCGTTCCTCAGCAATT+TGG 0.300614 4.1:-12246893 MS.gene27907:CDS
GCAATGGCATTTGGAGATAC+TGG 0.302939 4.1:-12246497 MS.gene27907:CDS
GTTCTCGGCTGATGATATAA+TGG 0.310794 4.1:-12246558 MS.gene27907:CDS
ATAAATTCTGCAATGGCATT+TGG 0.314753 4.1:-12246506 MS.gene27907:CDS
ACAATAGACGGTTGGAATTT+GGG 0.317344 4.1:-12249595 MS.gene27907:CDS
ATCTAGTGGTTCAAAGAATA+TGG 0.320374 4.1:-12247373 MS.gene27907:intron
TTCTTCAGGTCAGCAAATAT+TGG 0.330231 4.1:-12248773 MS.gene27907:intron
GGAGTAATTTGAATCCAGTT+TGG 0.344163 4.1:-12246931 MS.gene27907:CDS
GCAATTTGGACCAATAAGTT+TGG 0.353128 4.1:-12246879 MS.gene27907:intron
ATGATATGCGTATAGGAAAA+TGG 0.354086 4.1:-12246466 MS.gene27907:CDS
TCATGACTGGCGTCTGGTCC+TGG 0.366903 4.1:+12247822 None:intergenic
GTGGATGTCTCTTGATCATT+AGG 0.379350 4.1:-12246318 None:intergenic
ATCTGCCAATTCAATTTATG+AGG 0.388056 4.1:-12247871 MS.gene27907:CDS
ATAAGTTCCTCGTTCCAAAC+TGG 0.391227 4.1:+12246917 None:intergenic
AAAAGCCTCATAAATTGAAT+TGG 0.395677 4.1:+12247866 None:intergenic
CCAAGCTTCAAAACAACATA+TGG 0.397782 4.1:+12247110 None:intergenic
CTGTTCAGACGACTGTAATA+AGG 0.399690 4.1:-12246952 MS.gene27907:CDS
TTGTATGCTTAAAATGTTGT+GGG 0.417828 4.1:-12248745 MS.gene27907:CDS
ATTTGATCATGACTTGTTCT+CGG 0.424924 4.1:-12246573 MS.gene27907:CDS
TACAGGTAAAAGAAGATTGA+AGG 0.424972 4.1:-12249058 MS.gene27907:intron
TTCTCGGCTGATGATATAAT+GGG 0.430169 4.1:-12246557 MS.gene27907:CDS
AGCATAGTCAATATCATTGA+TGG 0.443930 4.1:-12246410 MS.gene27907:CDS
TGTCTGTAACATTGGATGAA+TGG 0.468188 4.1:-12247938 MS.gene27907:CDS
CGTTCTTCATGACTGGCGTC+TGG 0.471968 4.1:+12247816 None:intergenic
AGTCAATATCATTGATGGTA+AGG 0.482666 4.1:-12246405 MS.gene27907:CDS
AAACATAACATACTTGATAC+AGG 0.485779 4.1:+12249569 None:intergenic
TAATGACAACGCGCTTATAG+AGG 0.487418 4.1:-12246435 MS.gene27907:CDS
ATAGATGCAATGATGGAAGT+TGG 0.488889 4.1:-12247903 MS.gene27907:CDS
ATGTTTGATGATATGCGTAT+AGG 0.495087 4.1:-12246473 MS.gene27907:CDS
TTGTGCTGATTGTAGTGCTC+CGG 0.495186 4.1:-12249007 MS.gene27907:CDS
AAGAACGTGCAAAATTCATC+AGG 0.500258 4.1:-12247800 MS.gene27907:intron
TAGTGCTCCGGATCCTAAAT+GGG 0.500733 4.1:-12248995 MS.gene27907:CDS
ACCTTTAATAAATTCTGCAA+TGG 0.502560 4.1:-12246513 MS.gene27907:CDS
ACTTACGCCCATTTAGGATC+CGG 0.503153 4.1:+12248988 None:intergenic
TGATGAAATAGATGCAATGA+TGG 0.538280 4.1:-12247910 MS.gene27907:CDS
AATTAAACTTAGAACTTGAG+TGG 0.550387 4.1:-12246337 MS.gene27907:CDS
GTCGATGAACAATAGACGGT+TGG 0.555087 4.1:-12249603 MS.gene27907:CDS
TTTGTATGCTTAAAATGTTG+TGG 0.556153 4.1:-12248746 MS.gene27907:CDS
TGTGGGGTGCACAGAAGTCT+TGG 0.558109 4.1:-12248728 MS.gene27907:CDS
ATTTAGCAATCAGAGATATG+AGG 0.559392 4.1:-12247142 MS.gene27907:CDS
CCGGAAGGATATACAAAACC+AGG 0.574677 4.1:-12247840 MS.gene27907:CDS
ATGGTGAAAATAGGAAGGAA+TGG 0.575850 4.1:-12247210 MS.gene27907:intron
TGGTCCAAATTGCTGAGGAA+CGG 0.581432 4.1:+12246889 None:intergenic
GATAGCTTTCGAAAATCTAG+TGG 0.590041 4.1:-12247387 MS.gene27907:CDS
GATGCAATGATGGAAGTTGG+AGG 0.591464 4.1:-12247900 MS.gene27907:CDS
TGGAATGCTGAAAGTGAAAG+TGG 0.593242 4.1:-12247177 MS.gene27907:CDS
CTGAAAGTGAAAGTGGTCAA+AGG 0.594303 4.1:-12247170 MS.gene27907:CDS
GGATGTCGATGAACAATAGA+CGG 0.602168 4.1:-12249607 MS.gene27907:CDS
TCTTGGCACTCATATATCAA+AGG 0.604306 4.1:-12248711 MS.gene27907:intron
CTTATTGGTCCAAATTGCTG+AGG 0.607175 4.1:+12246884 None:intergenic
TGTATGCTTAAAATGTTGTG+GGG 0.631760 4.1:-12248744 MS.gene27907:CDS
AAGCTCCAGAATGTCGAATG+TGG 0.636564 4.1:-12246362 MS.gene27907:CDS
TTTGAATCCAGTTTGGAACG+AGG 0.647447 4.1:-12246924 MS.gene27907:CDS
ATAGACGGTTGGAATTTGGG+AGG 0.688403 4.1:-12249592 MS.gene27907:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATTTCACACTTAAA+TGG + chr4.1:12248403-12248422 None:intergenic 15.0%
!! GATATAATCCATTAAAATTT+AGG + chr4.1:12246513-12246532 None:intergenic 15.0%
!! TGAAATAATTGAAAAACTAA+CGG - chr4.1:12247314-12247333 MS.gene27907:intron 15.0%
!!! ATGTATTGTTTTAGATATAT+TGG + chr4.1:12249204-12249223 None:intergenic 15.0%
!!! TATAATATGTATGTTTTTCA+AGG - chr4.1:12246618-12246637 MS.gene27907:intron 15.0%
!! AAACTACATAAATTGTTTAC+AGG + chr4.1:12249140-12249159 None:intergenic 20.0%
!! ATATATATATTACTACCGTA+TGG - chr4.1:12247514-12247533 MS.gene27907:intron 20.0%
!! CAAATTACATGTTTAAAAAC+AGG - chr4.1:12246730-12246749 MS.gene27907:intron 20.0%
!! GAAATAATTGAAAAACTAAC+GGG - chr4.1:12247315-12247334 MS.gene27907:intron 20.0%
!! TAAAAAAATTAGTAGGACAA+TGG + chr4.1:12247728-12247747 None:intergenic 20.0%
!! TGAATGATATTGAATATTGA+TGG - chr4.1:12248695-12248714 MS.gene27907:intron 20.0%
!! TTTCAATAGCATATACTATT+AGG - chr4.1:12248853-12248872 MS.gene27907:intron 20.0%
!! TTTCAATTATTTCAAGACAA+GGG + chr4.1:12247308-12247327 None:intergenic 20.0%
!!! AAGGATGTTCTTTTATATTT+GGG - chr4.1:12247478-12247497 MS.gene27907:CDS 20.0%
!!! CTTTCTTTTTAAATTGACAA+TGG - chr4.1:12248933-12248952 MS.gene27907:intron 20.0%
!!! TAATTTAAAAAAGAGTGTGT+TGG + chr4.1:12246476-12246495 None:intergenic 20.0%
!!! TTTTCAATTATTTCAAGACA+AGG + chr4.1:12247309-12247328 None:intergenic 20.0%
! AAAAGCCTCATAAATTGAAT+TGG + chr4.1:12248061-12248080 None:intergenic 25.0%
! AAACATAACATACTTGATAC+AGG + chr4.1:12246358-12246377 None:intergenic 25.0%
! AAGAAGATTGAAGGATTTAT+TGG - chr4.1:12246875-12246894 MS.gene27907:intron 25.0%
! AAGGAAAAACTAAACCAAAA+TGG + chr4.1:12246819-12246838 None:intergenic 25.0%
! AAGTTTCTCCAAAAAGATTA+TGG - chr4.1:12248515-12248534 MS.gene27907:intron 25.0%
! AATAAACAAAAAAGGTTGTG+TGG + chr4.1:12246974-12246993 None:intergenic 25.0%
! AATATGAGAAGAGCAAAATT+TGG + chr4.1:12248243-12248262 None:intergenic 25.0%
! AATCCATTAAAATTTAGGAG+CGG + chr4.1:12246508-12246527 None:intergenic 25.0%
! AATTAAACTTAGAACTTGAG+TGG - chr4.1:12249587-12249606 MS.gene27907:CDS 25.0%
! ACCTTTAATAAATTCTGCAA+TGG - chr4.1:12249411-12249430 MS.gene27907:intron 25.0%
! ATACATACAAATGTGTATGT+GGG - chr4.1:12247353-12247372 MS.gene27907:intron 25.0%
! ATATGAGAAGAGCAAAATTT+GGG + chr4.1:12248242-12248261 None:intergenic 25.0%
! ATATTGACATTTATGATTGC+AGG - chr4.1:12248421-12248440 MS.gene27907:intron 25.0%
! TTCATATACAAGACATTGTA+AGG + chr4.1:12249285-12249304 None:intergenic 25.0%
! TTCTTACTATGAATAGATTG+AGG - chr4.1:12247791-12247810 MS.gene27907:intron 25.0%
! TTGTATGCTTAAAATGTTGT+GGG - chr4.1:12247179-12247198 MS.gene27907:CDS 25.0%
! TTTGTATGCTTAAAATGTTG+TGG - chr4.1:12247178-12247197 MS.gene27907:CDS 25.0%
!! AAAGCTATCCATAATCTTTT+TGG + chr4.1:12248526-12248545 None:intergenic 25.0%
!! AATTTATGAGGCTTTTATTC+CGG - chr4.1:12248065-12248084 MS.gene27907:intron 25.0%
!! GAAGGATGTTCTTTTATATT+TGG - chr4.1:12247477-12247496 MS.gene27907:CDS 25.0%
!! GTTTTCATGAGTGATTTTAA+TGG - chr4.1:12248667-12248686 MS.gene27907:intron 25.0%
!!! ACCTTTTTTGTTTATTGTCA+TGG - chr4.1:12246978-12246997 MS.gene27907:intron 25.0%
!!! ATTGCACTTTGAAATTCAAA+AGG - chr4.1:12247766-12247785 MS.gene27907:intron 25.0%
!!! GTATTGGTTAAAATCTTTGT+CGG - chr4.1:12246687-12246706 MS.gene27907:intron 25.0%
!!! GTCCTACTAATTTTTTTAGA+CGG - chr4.1:12247730-12247749 MS.gene27907:intron 25.0%
!!! TACAAATTGTGTTGGTTATA+TGG - chr4.1:12246661-12246680 MS.gene27907:intron 25.0%
!!! TCCTACTAATTTTTTTAGAC+GGG - chr4.1:12247731-12247750 MS.gene27907:intron 25.0%
!!! TGAATATTGATGGTGAAAAT+AGG - chr4.1:12248705-12248724 MS.gene27907:intron 25.0%
AACAACCAACCATTCTTATA+TGG - chr4.1:12247434-12247453 MS.gene27907:CDS 30.0%
AACGATTTAAGGAAAAGTAG+TGG - chr4.1:12246757-12246776 MS.gene27907:intron 30.0%
ACAAAATCTGACAAGGAAAA+AGG + chr4.1:12247969-12247988 None:intergenic 30.0%
ACACAAATACATTCAATCGA+AGG + chr4.1:12248592-12248611 None:intergenic 30.0%
AGCATAGTCAATATCATTGA+TGG - chr4.1:12249514-12249533 MS.gene27907:intron 30.0%
AGTGCTAAACTTAATGATCT+AGG - chr4.1:12247616-12247635 MS.gene27907:intron 30.0%
ATAAATTCTGCAATGGCATT+TGG - chr4.1:12249418-12249437 MS.gene27907:intron 30.0%
ATCTAGTGGTTCAAAGAATA+TGG - chr4.1:12248551-12248570 MS.gene27907:intron 30.0%
ATCTGCCAATTCAATTTATG+AGG - chr4.1:12248053-12248072 MS.gene27907:intron 30.0%
ATGATATGCGTATAGGAAAA+TGG - chr4.1:12249458-12249477 MS.gene27907:intron 30.0%
ATTTAGCAATCAGAGATATG+AGG - chr4.1:12248782-12248801 MS.gene27907:intron 30.0%
CAGTATGCTAATTCAACTTA+TGG + chr4.1:12248618-12248637 None:intergenic 30.0%
CATACATACAAATGTGTATG+TGG - chr4.1:12247352-12247371 MS.gene27907:intron 30.0%
GAAGGAATGGTAGAATTTAT+TGG - chr4.1:12248727-12248746 MS.gene27907:CDS 30.0%
GAGGATAAATTAGTAGTATG+TGG + chr4.1:12247684-12247703 None:intergenic 30.0%
GCCATGACAATAAACAAAAA+AGG + chr4.1:12246982-12247001 None:intergenic 30.0%
GCCATTGCAGAATTTATTAA+AGG + chr4.1:12249415-12249434 None:intergenic 30.0%
GTGCTAAACTTAATGATCTA+GGG - chr4.1:12247617-12247636 MS.gene27907:intron 30.0%
TAATAATAGTCCATTGTGCT+TGG - chr4.1:12248299-12248318 MS.gene27907:intron 30.0%
TAATTTATCCTCCATTCCAT+TGG - chr4.1:12247692-12247711 MS.gene27907:intron 30.0%
TACAAATGTGACAGATTTCT+TGG + chr4.1:12247085-12247104 None:intergenic 30.0%
TACAGGTAAAAGAAGATTGA+AGG - chr4.1:12246866-12246885 MS.gene27907:intron 30.0%
TCCCGTCTAAAAAAATTAGT+AGG + chr4.1:12247735-12247754 None:intergenic 30.0%
TCTATACATGAATAGAATCG+AGG - chr4.1:12247910-12247929 MS.gene27907:CDS 30.0%
TGATGAAATAGATGCAATGA+TGG - chr4.1:12248014-12248033 MS.gene27907:intron 30.0%
TGTAACCTTACCAAACTTAT+TGG + chr4.1:12249058-12249077 None:intergenic 30.0%
TGTATGCTTAAAATGTTGTG+GGG - chr4.1:12247180-12247199 MS.gene27907:CDS 30.0%
TGTTGATGTACAAATTGTGT+TGG - chr4.1:12246653-12246672 MS.gene27907:intron 30.0%
! AAATGGAACGTTGATTGAAT+TGG + chr4.1:12248386-12248405 None:intergenic 30.0%
! ACTTTTTGTCACTGAAAAGT+AGG - chr4.1:12248183-12248202 MS.gene27907:intron 30.0%
! AGTCAATATCATTGATGGTA+AGG - chr4.1:12249519-12249538 MS.gene27907:intron 30.0%
! ATGTTTGATGATATGCGTAT+AGG - chr4.1:12249451-12249470 MS.gene27907:intron 30.0%
! GGAACTAGATTTTGCATTAT+AGG + chr4.1:12249119-12249138 None:intergenic 30.0%
! GTTGGTTATATGGTTTGTAT+TGG - chr4.1:12246671-12246690 MS.gene27907:intron 30.0%
! TATCCGCTCCTAAATTTTAA+TGG - chr4.1:12246502-12246521 MS.gene27907:CDS 30.0%
! TCAGATTTTGTCTGTAACAT+TGG - chr4.1:12247978-12247997 MS.gene27907:intron 30.0%
! TTAATGATCTAGGGTATAAG+AGG - chr4.1:12247626-12247645 MS.gene27907:intron 30.0%
! TTTAAAAAAGAGTGTGTTGG+TGG + chr4.1:12246473-12246492 None:intergenic 30.0%
!! ACAAATGTCTTTGAAGTACT+TGG - chr4.1:12246557-12246576 MS.gene27907:CDS 30.0%
!! ATTTGATCATGACTTGTTCT+CGG - chr4.1:12249351-12249370 MS.gene27907:intron 30.0%
!! TATTGATGGTGAAAATAGGA+AGG - chr4.1:12248709-12248728 MS.gene27907:intron 30.0%
!!! GTCGGAAATAATTTTTTCGA+AGG - chr4.1:12246705-12246724 MS.gene27907:intron 30.0%
!!! TTTTTTTGAACTGCTTCTTC+AGG - chr4.1:12247137-12247156 MS.gene27907:CDS 30.0%
AAACAGGCATGAACGATTTA+AGG - chr4.1:12246746-12246765 MS.gene27907:intron 35.0%
AACAATAGACGGTTGGAATT+TGG - chr4.1:12246328-12246347 MS.gene27907:CDS 35.0%
AACATGCTTCATTGTATTGC+AGG - chr4.1:12249324-12249343 MS.gene27907:intron 35.0%
AAGAACGTGCAAAATTCATC+AGG - chr4.1:12248124-12248143 MS.gene27907:intron 35.0%
ACAATAGACGGTTGGAATTT+GGG - chr4.1:12246329-12246348 MS.gene27907:CDS 35.0%
ACCAATCATTCAACTTCTCA+AGG + chr4.1:12246838-12246857 None:intergenic 35.0%
ATGCTTGTGCAATAGTTTGA+AGG - chr4.1:12247459-12247478 MS.gene27907:CDS 35.0%
ATGGTGAAAATAGGAAGGAA+TGG - chr4.1:12248714-12248733 MS.gene27907:CDS 35.0%
ATTGAAAACAACCAACCTGT+TGG + chr4.1:12248840-12248859 None:intergenic 35.0%
CAAGCATAGCCATATAAGAA+TGG + chr4.1:12247446-12247465 None:intergenic 35.0%
CAATGGTTAGTGATTACCAA+TGG + chr4.1:12247711-12247730 None:intergenic 35.0%
CATAGCCATATAAGAATGGT+TGG + chr4.1:12247442-12247461 None:intergenic 35.0%
CCAAGCTTCAAAACAACATA+TGG + chr4.1:12248817-12248836 None:intergenic 35.0%
GAATAAACTTACGCCCATTT+AGG + chr4.1:12246945-12246964 None:intergenic 35.0%
GATAGCTTTCGAAAATCTAG+TGG - chr4.1:12248537-12248556 MS.gene27907:intron 35.0%
GCAATTTGGACCAATAAGTT+TGG - chr4.1:12249045-12249064 MS.gene27907:CDS 35.0%
GGAGTAATTTGAATCCAGTT+TGG - chr4.1:12248993-12249012 MS.gene27907:intron 35.0%
GTTACAGACAAAATCTGACA+AGG + chr4.1:12247976-12247995 None:intergenic 35.0%
GTTAGATCGATGGATAAGAT+AGG - chr4.1:12247831-12247850 MS.gene27907:CDS 35.0%
GTTAGTGATTACCAATGGAA+TGG + chr4.1:12247706-12247725 None:intergenic 35.0%
GTTCATGGTAGCATAAAAAG+TGG - chr4.1:12248358-12248377 MS.gene27907:intron 35.0%
TAGGTAGAATGTAAGACAAG+AGG - chr4.1:12247850-12247869 MS.gene27907:CDS 35.0%
TCCTTGAGAAGTTGAATGAT+TGG - chr4.1:12246834-12246853 MS.gene27907:intron 35.0%
TCTTGGCACTCATATATCAA+AGG - chr4.1:12247213-12247232 MS.gene27907:intron 35.0%
TGAGAAGTTGAATGATTGGT+AGG - chr4.1:12246838-12246857 MS.gene27907:intron 35.0%
TGTAAGTTGTGTTAGATCGA+TGG - chr4.1:12247821-12247840 MS.gene27907:CDS 35.0%
TGTCTGTAACATTGGATGAA+TGG - chr4.1:12247986-12248005 MS.gene27907:intron 35.0%
TTAGAGCAACATTACGTATG+AGG - chr4.1:12249239-12249258 MS.gene27907:intron 35.0%
TTCTCGGCTGATGATATAAT+GGG - chr4.1:12249367-12249386 MS.gene27907:intron 35.0%
TTCTTCAGGTCAGCAAATAT+TGG - chr4.1:12247151-12247170 MS.gene27907:CDS 35.0%
TTGGACCAATAAGTTTGGTA+AGG - chr4.1:12249050-12249069 MS.gene27907:CDS 35.0%
! ATAGATGCAATGATGGAAGT+TGG - chr4.1:12248021-12248040 MS.gene27907:intron 35.0%
! ATGATTGGTAGGTCTTTTAC+AGG - chr4.1:12246849-12246868 MS.gene27907:intron 35.0%
! TGTGACATGAAAAGCCATTT+TGG - chr4.1:12246802-12246821 MS.gene27907:intron 35.0%
!! TCATGGCCTTTCTAAAACTA+AGG - chr4.1:12246995-12247014 MS.gene27907:intron 35.0%
!!! CCATATGTTGTTTTGAAGCT+TGG - chr4.1:12248814-12248833 MS.gene27907:intron 35.0%
!!! CTCAGACCTTAGTTTTAGAA+AGG + chr4.1:12247004-12247023 None:intergenic 35.0%
AGTGATTACCAATGGAATGG+AGG + chr4.1:12247703-12247722 None:intergenic 40.0%
ATAAGTTCCTCGTTCCAAAC+TGG + chr4.1:12249010-12249029 None:intergenic 40.0%
ATGCTTCATTGTATTGCAGG+AGG - chr4.1:12249327-12249346 MS.gene27907:intron 40.0%
ATTCTCCACATTCGACATTC+TGG + chr4.1:12249570-12249589 None:intergenic 40.0%
CAATGCTTAACCAAGCACAA+TGG + chr4.1:12248312-12248331 None:intergenic 40.0%
CATACAAATGTGTATGTGGG+TGG - chr4.1:12247356-12247375 MS.gene27907:intron 40.0%
CTGAAAGTGAAAGTGGTCAA+AGG - chr4.1:12248754-12248773 MS.gene27907:CDS 40.0%
CTGTTCAGACGACTGTAATA+AGG - chr4.1:12248972-12248991 MS.gene27907:intron 40.0%
CTTATTGGTCCAAATTGCTG+AGG + chr4.1:12249043-12249062 None:intergenic 40.0%
GCTGAAGACAAAGATTCATC+TGG + chr4.1:12248220-12248239 None:intergenic 40.0%
GTTCTCGGCTGATGATATAA+TGG - chr4.1:12249366-12249385 MS.gene27907:intron 40.0%
TAATGACAACGCGCTTATAG+AGG - chr4.1:12249489-12249508 MS.gene27907:intron 40.0%
TGGAATGCTGAAAGTGAAAG+TGG - chr4.1:12248747-12248766 MS.gene27907:CDS 40.0%
! ATGATCTAGGGTATAAGAGG+TGG - chr4.1:12247629-12247648 MS.gene27907:intron 40.0%
! ATGGCTTTTCATGTCACAAG+TGG + chr4.1:12246800-12246819 None:intergenic 40.0%
! TATGAGGCTTTTATTCCGGA+AGG - chr4.1:12248069-12248088 MS.gene27907:intron 40.0%
! TTTGAATCCAGTTTGGAACG+AGG - chr4.1:12249000-12249019 MS.gene27907:CDS 40.0%
! TTTTGCACGTTCTTCATGAC+TGG + chr4.1:12248118-12248137 None:intergenic 40.0%
!! TGTAAGACAAGAGGAGTGTT+AGG - chr4.1:12247859-12247878 MS.gene27907:CDS 40.0%
!!! CCTGGTTTTGTATATCCTTC+CGG + chr4.1:12248087-12248106 None:intergenic 40.0%
AAGCTCCAGAATGTCGAATG+TGG - chr4.1:12249562-12249581 MS.gene27907:intron 45.0%
ATAGACGGTTGGAATTTGGG+AGG - chr4.1:12246332-12246351 MS.gene27907:CDS 45.0%
CCGCAATCATGTATGCCATA+CGG + chr4.1:12247532-12247551 None:intergenic 45.0%
CCGGAAGGATATACAAAACC+AGG - chr4.1:12248084-12248103 MS.gene27907:intron 45.0%
CCGTATGGCATACATGATTG+CGG - chr4.1:12247529-12247548 MS.gene27907:intron 45.0%
CGACATTGCGATGTTGTTCA+TGG - chr4.1:12248343-12248362 MS.gene27907:intron 45.0%
GCAATGGCATTTGGAGATAC+TGG - chr4.1:12249427-12249446 MS.gene27907:intron 45.0%
GTCGATGAACAATAGACGGT+TGG - chr4.1:12246321-12246340 MS.gene27907:CDS 45.0%
TAGTGCTCCGGATCCTAAAT+GGG - chr4.1:12246929-12246948 MS.gene27907:CDS 45.0%
TGGTCCAAATTGCTGAGGAA+CGG + chr4.1:12249038-12249057 None:intergenic 45.0%
TTGTCCGTTCCTCAGCAATT+TGG - chr4.1:12249031-12249050 MS.gene27907:CDS 45.0%
! ACTTACGCCCATTTAGGATC+CGG + chr4.1:12246939-12246958 None:intergenic 45.0%
! GATGCAATGATGGAAGTTGG+AGG - chr4.1:12248024-12248043 MS.gene27907:intron 45.0%
!! TTGTGCTGATTGTAGTGCTC+CGG - chr4.1:12246917-12246936 MS.gene27907:CDS 45.0%
!!! TGTTTTGAAGCTTGGCCAAC+AGG - chr4.1:12248822-12248841 MS.gene27907:intron 45.0%
GTAGTGCTCCGGATCCTAAA+TGG - chr4.1:12246928-12246947 MS.gene27907:CDS 50.0%
TTGAAGCTTGGCCAACAGGT+TGG - chr4.1:12248826-12248845 MS.gene27907:intron 50.0%
CGTTCTTCATGACTGGCGTC+TGG + chr4.1:12248111-12248130 None:intergenic 55.0%
TGTGGGGTGCACAGAAGTCT+TGG - chr4.1:12247196-12247215 MS.gene27907:CDS 55.0%
TCATGACTGGCGTCTGGTCC+TGG + chr4.1:12248105-12248124 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 12246319 12249627 12246319 ID=MS.gene27907
chr4.1 mRNA 12246319 12249627 12246319 ID=MS.gene27907.t1;Parent=MS.gene27907
chr4.1 exon 12249582 12249627 12249582 ID=MS.gene27907.t1.exon1;Parent=MS.gene27907.t1
chr4.1 CDS 12249582 12249627 12249582 ID=cds.MS.gene27907.t1;Parent=MS.gene27907.t1
chr4.1 exon 12248994 12249075 12248994 ID=MS.gene27907.t1.exon2;Parent=MS.gene27907.t1
chr4.1 CDS 12248994 12249075 12248994 ID=cds.MS.gene27907.t1;Parent=MS.gene27907.t1
chr4.1 exon 12248712 12248787 12248712 ID=MS.gene27907.t1.exon3;Parent=MS.gene27907.t1
chr4.1 CDS 12248712 12248787 12248712 ID=cds.MS.gene27907.t1;Parent=MS.gene27907.t1
chr4.1 exon 12247801 12247964 12247801 ID=MS.gene27907.t1.exon4;Parent=MS.gene27907.t1
chr4.1 CDS 12247801 12247964 12247801 ID=cds.MS.gene27907.t1;Parent=MS.gene27907.t1
chr4.1 exon 12247374 12247503 12247374 ID=MS.gene27907.t1.exon5;Parent=MS.gene27907.t1
chr4.1 CDS 12247374 12247503 12247374 ID=cds.MS.gene27907.t1;Parent=MS.gene27907.t1
chr4.1 exon 12247103 12247219 12247103 ID=MS.gene27907.t1.exon6;Parent=MS.gene27907.t1
chr4.1 CDS 12247103 12247219 12247103 ID=cds.MS.gene27907.t1;Parent=MS.gene27907.t1
chr4.1 exon 12246880 12246975 12246880 ID=MS.gene27907.t1.exon7;Parent=MS.gene27907.t1
chr4.1 CDS 12246880 12246975 12246880 ID=cds.MS.gene27907.t1;Parent=MS.gene27907.t1
chr4.1 exon 12246319 12246600 12246319 ID=MS.gene27907.t1.exon8;Parent=MS.gene27907.t1
chr4.1 CDS 12246319 12246600 12246319 ID=cds.MS.gene27907.t1;Parent=MS.gene27907.t1
Gene Sequence

>MS.gene27907

ATGTCGATGAACAATAGACGGTTGGAATTTGGGAGGCCTGTATCAAGTATGTTATGTTTCTTATTACACAACATTCTCTTGCATTTAGCTAGTTTACTCTTATCAAAATTCGATATATACTCTCACATTTATCAGTAATTTTTTTAATTATCCACCAACACACTCTTTTTTAAATTAAGTGTTTATCCGCTCCTAAATTTTAATGGATTATATCACAAAGCTTTCAGTTGCTAATCTTACAAATGTCTTTGAAGTACTTGGTAAGAAACATAAAAATCTAACATTTCATGCTCACAGTATATAATATGTATGTTTTTCAAGGACACAAGTTATTTGTTGATGTACAAATTGTGTTGGTTATATGGTTTGTATTGGTTAAAATCTTTGTCGGAAATAATTTTTTCGAAGGCTCAAATTACATGTTTAAAAACAGGCATGAACGATTTAAGGAAAAGTAGTGGTTGCTTATTTCATATGTCCACTTGTGACATGAAAAGCCATTTTGGTTTAGTTTTTCCTTGAGAAGTTGAATGATTGGTAGGTCTTTTACAGGTAAAAGAAGATTGAAGGATTTATTGGTTCAAAAAGATAATCGCTTTTGTGCTGATTGTAGTGCTCCGGATCCTAAATGGGCGTAAGTTTATTCACTTATCCACACAACCTTTTTTGTTTATTGTCATGGCCTTTCTAAAACTAAGGTCTGAGAGTCATGTTTTTCTGTGTAATCAGATTATGAGATATATTAGTGTAATTAACTTATTCTCCAAGAAATCTGTCACATTTGTAATGTATATTAACTTTTTTTAGTTGAAGTTAAATTTTTTTGAACTGCTTCTTCAGGTCAGCAAATATTGGAGTTTTTGTATGCTTAAAATGTTGTGGGGTGCACAGAAGTCTTGGCACTCATATATCAAAGGTAAATCATTCACGATCTTTTAATTAAAAAACATTTTATCTTTATCGATGAGAAAAATTTAAACTGAGTTCCCTTGTCTTGAAATAATTGAAAAACTAACGGGATATATACATACAGCATACATACAAATGTGTATGTGGGTGGATAGATACATATATAGCTAATATTTTTCTTTTGTTTGAACTTAATTTAATGAGAAAACAACCAACCATTCTTATATGGCTATGCTTGTGCAATAGTTTGAAGGATGTTCTTTTATATTTGGGTGCATTTAAAAAAATATATATATTACTACCGTATGGCATACATGATTGCGGTGAAGCATTATTCTTAGAACTTATATTAGCACGTGATGTCTTCTGAAATATGAAATTCAGACAAAGTGCTAAACTTAATGATCTAGGGTATAAGAGGTGGACTCTTCGCAAATAAGTGTTTTTATTTTTCCACATACTACTAATTTATCCTCCATTCCATTGGTAATCACTAACCATTGTCCTACTAATTTTTTTAGACGGGAAAACATGTTATATTGCACTTTGAAATTCAAAAGGATTTCTTACTATGAATAGATTGAGGTTGCTTGTGTAAGTTGTGTTAGATCGATGGATAAGATAGGTAGAATGTAAGACAAGAGGAGTGTTAGGAACACTCTCTTTTCAACACTCTCTAATCTCTATACATGAATAGAATCGAGGTTGCTTGTTATGCATTAAATCACTGAGACGTTTCCTTTTTCCTTGTCAGATTTTGTCTGTAACATTGGATGAATGGTCAAATGATGAAATAGATGCAATGATGGAAGTTGGAGGAAATGCATCTGCCAATTCAATTTATGAGGCTTTTATTCCGGAAGGATATACAAAACCAGGACCAGACGCCAGTCATGAAGAACGTGCAAAATTCATCAGGTAAGACATTCTTACATTTATATTATAAATTTGTTACACTTTTTGTCACTGAAAAGTAGGTAATGATACATCCAGATGAATCTTTGTCTTCAGCCCAAATTTTGCTCTTCTCATATTTATTGTTTTGCAACTCTTATATAGTGTTACTCTTTTTAATAATAGTCCATTGTGCTTGGTTAAGCATTGACTAATTTACACGACATTGCGATGTTGTTCATGGTAGCATAAAAAGTGGTACCAATTCAATCAACGTTCCATTTAAGTGTGAAATTTTAATATTGACATTTATGATTGCAGGTCAAAGTATGAGCGTCAAGAATTTTTGAAACAAAGTTTGCGCATTTTATCAACAAAAAGCAAACGTCAAACAAGTTTCTCCAAAAAGATTATGGATAGCTTTCGAAAATCTAGTGGTTCAAAGAATATGGTAATTATATTTAGTTCCTTCGATTGAATGTATTTGTGTTGACCATAAGTTGAATTAGCATACTGATGCAATGAAATTGAAATGAAATGAAATTGTTTTCATGAGTGATTTTAATGGATGTTTGAATGATATTGAATATTGATGGTGAAAATAGGAAGGAATGGTAGAATTTATTGGAATGCTGAAAGTGAAAGTGGTCAAAGGCACAAATTTAGCAATCAGAGATATGAGGACAAGTGATCCATATGTTGTTTTGAAGCTTGGCCAACAGGTTGGTTGTTTTCAATAGCATATACTATTAGGAAACTTTTTCTCTTTATTATTTTATTATTTTAGCTGATGAATAATATATGTTGATAACTTTCTTTTTAAATTGACAATGGTGTTATTGCATTCAGACTGTTCAGACGACTGTAATAAGGAGTAATTTGAATCCAGTTTGGAACGAGGAACTTATGTTGTCCGTTCCTCAGCAATTTGGACCAATAAGTTTGGTAAGGTTACATTTTATCGTGTCTAGTTAAAAACACATTTTTTGTTTATCCTATAATGCAAAATCTAGTTCCTGTAAACAATTTATGTAGTTTGCTTGCTATTTATTTGACTCTCGCAAACTAGATTCTAGCAACCAATATATCTAAAACAATACATAATGTAATGTATTGCTTAGAGCAACATTACGTATGAGGAGATGATTCAATATTTCAATCCTTACAATGTCTTGTATATGAAAATGAGACTTAATATTGACAACATGCTTCATTGTATTGCAGGAGGTATTTGATCATGACTTGTTCTCGGCTGATGATATAATGGGAGAAGCGCAGATTGATCTTCAACCTTTAATAAATTCTGCAATGGCATTTGGAGATACTGGAATGTTTGATGATATGCGTATAGGAAAATGGCTGAAATCTAATGACAACGCGCTTATAGAGGATAGCATAGTCAATATCATTGATGGTAAGGTTAAACAAGAGATGTTTATTAAGCTCCAGAATGTCGAATGTGGAGAATTAAACTTAGAACTTGAGTGGATGTCTCTTGATCATTAG

Protein sequence

>MS.gene27907.t1

MSMNNRRLEFGRPVSSKRRLKDLLVQKDNRFCADCSAPDPKWASANIGVFVCLKCCGVHRSLGTHISKILSVTLDEWSNDEIDAMMEVGGNASANSIYEAFIPEGYTKPGPDASHEERAKFIRSKYERQEFLKQSLRILSTKSKRQTSFSKKIMDSFRKSSGSKNMEGMVEFIGMLKVKVVKGTNLAIRDMRTSDPYVVLKLGQQTVQTTVIRSNLNPVWNEELMLSVPQQFGPISLEVFDHDLFSADDIMGEAQIDLQPLINSAMAFGDTGMFDDMRIGKWLKSNDNALIEDSIVNIIDGKVKQEMFIKLQNVECGELNLELEWMSLDH