Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003302.t1 | XP_003594529.1 | 97.8 | 319 | 7 | 0 | 2 | 320 | 11 | 329 | 2.90E-175 | 624.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003302.t1 | Q8LFN9 | 70.7 | 328 | 86 | 2 | 2 | 319 | 8 | 335 | 3.1e-133 | 476.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003302.t1 | G7IKU9 | 97.8 | 319 | 7 | 0 | 2 | 320 | 11 | 329 | 2.1e-175 | 624.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056211 | MS.gene003302 | PPI |
| MS.gene65789 | MS.gene003302 | PPI |
| MS.gene003302 | MS.gene03069 | PPI |
| MS.gene003302 | MS.gene071746 | PPI |
| MS.gene40748 | MS.gene003302 | PPI |
| MS.gene034468 | MS.gene003302 | PPI |
| MS.gene90412 | MS.gene003302 | PPI |
| MS.gene02100 | MS.gene003302 | PPI |
| MS.gene016627 | MS.gene003302 | PPI |
| MS.gene20985 | MS.gene003302 | PPI |
| MS.gene84339 | MS.gene003302 | PPI |
| MS.gene039700 | MS.gene003302 | PPI |
| MS.gene003302 | MS.gene47863 | PPI |
| MS.gene66767 | MS.gene003302 | PPI |
| MS.gene43051 | MS.gene003302 | PPI |
| MS.gene27907 | MS.gene003302 | PPI |
| MS.gene90413 | MS.gene003302 | PPI |
| MS.gene85519 | MS.gene003302 | PPI |
| MS.gene058821 | MS.gene003302 | PPI |
| MS.gene35396 | MS.gene003302 | PPI |
| MS.gene003302 | MS.gene058831 | PPI |
| MS.gene21056 | MS.gene003302 | PPI |
| MS.gene92445 | MS.gene003302 | PPI |
| MS.gene003302 | MS.gene023667 | PPI |
| MS.gene74542 | MS.gene003302 | PPI |
| MS.gene005346 | MS.gene003302 | PPI |
| MS.gene050322 | MS.gene003302 | PPI |
| MS.gene007227 | MS.gene003302 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003302.t1 | MTR_2g030230 | 97.806 | 319 | 7 | 0 | 2 | 320 | 11 | 329 | 0.0 | 648 |
| MS.gene003302.t1 | MTR_8g088320 | 79.193 | 322 | 65 | 2 | 1 | 320 | 1 | 322 | 0.0 | 534 |
| MS.gene003302.t1 | MTR_3g017500 | 44.286 | 350 | 157 | 3 | 9 | 320 | 21 | 370 | 1.18e-109 | 323 |
| MS.gene003302.t1 | MTR_3g017500 | 44.286 | 350 | 157 | 3 | 9 | 320 | 51 | 400 | 3.83e-109 | 323 |
| MS.gene003302.t1 | MTR_8g038400 | 43.966 | 348 | 156 | 2 | 10 | 318 | 18 | 365 | 3.42e-105 | 312 |
| MS.gene003302.t1 | MTR_6g069470 | 41.765 | 170 | 98 | 1 | 149 | 318 | 3 | 171 | 6.73e-39 | 135 |
| MS.gene003302.t1 | MTR_2g027100 | 47.468 | 158 | 80 | 2 | 159 | 314 | 1 | 157 | 7.01e-39 | 135 |
| MS.gene003302.t1 | MTR_3g067585 | 41.875 | 160 | 92 | 1 | 159 | 318 | 1 | 159 | 2.37e-38 | 134 |
| MS.gene003302.t1 | MTR_8g107340 | 39.560 | 182 | 102 | 2 | 137 | 318 | 2 | 175 | 6.70e-38 | 133 |
| MS.gene003302.t1 | MTR_2g011590 | 38.365 | 159 | 97 | 1 | 160 | 318 | 1 | 158 | 1.12e-35 | 127 |
| MS.gene003302.t1 | MTR_1g031650 | 42.405 | 158 | 89 | 2 | 162 | 318 | 5 | 161 | 3.18e-34 | 123 |
| MS.gene003302.t1 | MTR_4g084280 | 40.373 | 161 | 93 | 3 | 159 | 318 | 1 | 159 | 1.20e-32 | 119 |
| MS.gene003302.t1 | MTR_8g464390 | 48.649 | 111 | 49 | 2 | 9 | 119 | 16 | 118 | 4.60e-28 | 113 |
| MS.gene003302.t1 | MTR_2g080950 | 48.649 | 111 | 49 | 2 | 9 | 119 | 16 | 118 | 6.64e-28 | 113 |
| MS.gene003302.t1 | MTR_6g080710 | 45.455 | 110 | 59 | 1 | 12 | 121 | 19 | 127 | 3.98e-27 | 107 |
| MS.gene003302.t1 | MTR_1g031650 | 40.323 | 124 | 73 | 1 | 195 | 318 | 2 | 124 | 8.42e-22 | 89.7 |
| MS.gene003302.t1 | MTR_7g099830 | 48.810 | 84 | 42 | 1 | 10 | 93 | 5 | 87 | 1.27e-21 | 95.1 |
| MS.gene003302.t1 | MTR_1g069000 | 48.864 | 88 | 43 | 2 | 10 | 96 | 5 | 91 | 1.57e-21 | 95.1 |
| MS.gene003302.t1 | MTR_7g020860 | 39.535 | 129 | 53 | 4 | 21 | 125 | 514 | 641 | 1.28e-19 | 90.1 |
| MS.gene003302.t1 | MTR_8g100100 | 39.844 | 128 | 52 | 3 | 21 | 124 | 512 | 638 | 5.52e-19 | 88.2 |
| MS.gene003302.t1 | MTR_8g100100 | 39.844 | 128 | 52 | 3 | 21 | 124 | 506 | 632 | 6.38e-19 | 87.8 |
| MS.gene003302.t1 | MTR_8g067080 | 40.426 | 94 | 54 | 2 | 1 | 93 | 1 | 93 | 1.47e-18 | 85.9 |
| MS.gene003302.t1 | MTR_8g471110 | 40.426 | 94 | 54 | 2 | 1 | 93 | 1 | 93 | 1.47e-18 | 85.9 |
| MS.gene003302.t1 | MTR_8g067080 | 40.426 | 94 | 54 | 2 | 1 | 93 | 1 | 93 | 1.51e-18 | 85.9 |
| MS.gene003302.t1 | MTR_7g020860 | 40.496 | 121 | 47 | 4 | 21 | 117 | 514 | 633 | 2.27e-18 | 86.3 |
| MS.gene003302.t1 | MTR_8g067090 | 35.252 | 139 | 81 | 5 | 12 | 146 | 13 | 146 | 3.64e-18 | 84.7 |
| MS.gene003302.t1 | MTR_8g471120 | 35.252 | 139 | 81 | 5 | 12 | 146 | 13 | 146 | 3.64e-18 | 84.7 |
| MS.gene003302.t1 | MTR_4g074170 | 37.615 | 109 | 56 | 3 | 21 | 118 | 491 | 598 | 2.84e-16 | 80.1 |
| MS.gene003302.t1 | MTR_3g098680 | 40.777 | 103 | 54 | 3 | 21 | 117 | 509 | 610 | 7.20e-16 | 79.0 |
| MS.gene003302.t1 | MTR_8g464390 | 48.000 | 75 | 31 | 2 | 45 | 119 | 1 | 67 | 5.80e-13 | 69.3 |
| MS.gene003302.t1 | MTR_2g080950 | 48.000 | 75 | 31 | 2 | 45 | 119 | 1 | 67 | 7.72e-13 | 68.9 |
| MS.gene003302.t1 | MTR_1g008950 | 36.264 | 91 | 56 | 2 | 164 | 252 | 4 | 94 | 7.25e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003302.t1 | AT4G05330 | 70.517 | 329 | 87 | 2 | 2 | 320 | 8 | 336 | 4.23e-177 | 493 |
| MS.gene003302.t1 | AT4G05330 | 70.517 | 329 | 87 | 2 | 2 | 320 | 8 | 336 | 4.23e-177 | 493 |
| MS.gene003302.t1 | AT4G21160 | 70.909 | 330 | 85 | 3 | 2 | 320 | 8 | 337 | 5.46e-177 | 493 |
| MS.gene003302.t1 | AT4G21160 | 70.909 | 330 | 85 | 3 | 2 | 320 | 8 | 337 | 5.46e-177 | 493 |
| MS.gene003302.t1 | AT4G21160 | 70.909 | 330 | 85 | 3 | 2 | 320 | 8 | 337 | 5.46e-177 | 493 |
| MS.gene003302.t1 | AT4G21160 | 70.909 | 330 | 85 | 3 | 2 | 320 | 8 | 337 | 5.46e-177 | 493 |
| MS.gene003302.t1 | AT4G05330 | 71.044 | 297 | 76 | 2 | 34 | 320 | 5 | 301 | 4.98e-157 | 441 |
| MS.gene003302.t1 | AT3G07940 | 47.478 | 337 | 150 | 2 | 9 | 318 | 47 | 383 | 3.01e-110 | 325 |
| MS.gene003302.t1 | AT3G07940 | 45.794 | 214 | 89 | 2 | 9 | 195 | 47 | 260 | 8.82e-61 | 195 |
| MS.gene003302.t1 | AT1G73580 | 43.558 | 163 | 91 | 1 | 156 | 318 | 1 | 162 | 4.58e-38 | 133 |
| MS.gene003302.t1 | AT3G17980 | 41.250 | 160 | 93 | 1 | 159 | 318 | 13 | 171 | 1.08e-35 | 127 |
| MS.gene003302.t1 | AT5G37740 | 41.718 | 163 | 91 | 2 | 159 | 318 | 1 | 162 | 1.23e-35 | 127 |
| MS.gene003302.t1 | AT5G47710 | 44.025 | 159 | 88 | 1 | 159 | 316 | 1 | 159 | 2.83e-35 | 126 |
| MS.gene003302.t1 | AT5G47710 | 44.025 | 159 | 88 | 1 | 159 | 316 | 1 | 159 | 2.83e-35 | 126 |
| MS.gene003302.t1 | AT5G47710 | 44.025 | 159 | 88 | 1 | 159 | 316 | 1 | 159 | 2.83e-35 | 126 |
| MS.gene003302.t1 | AT5G47710 | 44.025 | 159 | 88 | 1 | 159 | 316 | 1 | 159 | 2.83e-35 | 126 |
| MS.gene003302.t1 | AT1G70790 | 41.558 | 154 | 89 | 1 | 163 | 315 | 6 | 159 | 5.01e-35 | 126 |
| MS.gene003302.t1 | AT1G70790 | 41.558 | 154 | 89 | 1 | 163 | 315 | 6 | 159 | 5.01e-35 | 126 |
| MS.gene003302.t1 | AT1G70790 | 41.558 | 154 | 89 | 1 | 163 | 315 | 6 | 159 | 5.01e-35 | 126 |
| MS.gene003302.t1 | AT2G01540 | 40.260 | 154 | 91 | 1 | 163 | 315 | 6 | 159 | 4.73e-34 | 123 |
| MS.gene003302.t1 | AT1G70800 | 38.994 | 159 | 96 | 1 | 159 | 317 | 10 | 167 | 7.09e-34 | 122 |
| MS.gene003302.t1 | AT1G70810 | 38.750 | 160 | 97 | 1 | 159 | 318 | 1 | 159 | 1.31e-33 | 121 |
| MS.gene003302.t1 | AT1G66360 | 42.236 | 161 | 92 | 1 | 159 | 318 | 1 | 161 | 3.40e-33 | 120 |
| MS.gene003302.t1 | AT1G48590 | 39.375 | 160 | 96 | 1 | 159 | 318 | 6 | 164 | 1.06e-32 | 119 |
| MS.gene003302.t1 | AT1G48590 | 39.375 | 160 | 96 | 1 | 159 | 318 | 6 | 164 | 1.06e-32 | 119 |
| MS.gene003302.t1 | AT5G37740 | 39.766 | 171 | 89 | 3 | 159 | 316 | 1 | 170 | 1.57e-32 | 119 |
| MS.gene003302.t1 | AT1G48590 | 39.375 | 160 | 96 | 1 | 159 | 318 | 37 | 195 | 1.60e-32 | 120 |
| MS.gene003302.t1 | AT1G23140 | 36.025 | 161 | 100 | 2 | 159 | 318 | 1 | 159 | 9.55e-31 | 114 |
| MS.gene003302.t1 | AT3G17660 | 43.478 | 115 | 57 | 2 | 12 | 126 | 19 | 125 | 8.54e-30 | 112 |
| MS.gene003302.t1 | AT3G17660 | 43.478 | 115 | 57 | 2 | 12 | 126 | 19 | 125 | 2.53e-29 | 112 |
| MS.gene003302.t1 | AT3G17660 | 43.478 | 115 | 57 | 2 | 12 | 126 | 19 | 125 | 5.15e-29 | 112 |
| MS.gene003302.t1 | AT5G54310 | 46.552 | 116 | 54 | 2 | 9 | 124 | 16 | 123 | 1.46e-28 | 115 |
| MS.gene003302.t1 | AT1G70790 | 39.167 | 120 | 72 | 1 | 197 | 315 | 3 | 122 | 1.36e-21 | 89.7 |
| MS.gene003302.t1 | AT5G46750 | 33.529 | 170 | 104 | 3 | 12 | 174 | 13 | 180 | 2.41e-21 | 94.0 |
| MS.gene003302.t1 | AT2G35210 | 47.561 | 82 | 42 | 1 | 12 | 93 | 13 | 93 | 9.52e-21 | 92.0 |
| MS.gene003302.t1 | AT2G37550 | 47.619 | 84 | 43 | 1 | 10 | 93 | 5 | 87 | 1.15e-20 | 92.4 |
| MS.gene003302.t1 | AT2G37550 | 47.619 | 84 | 43 | 1 | 10 | 93 | 5 | 87 | 1.15e-20 | 92.4 |
| MS.gene003302.t1 | AT2G35210 | 47.561 | 82 | 42 | 1 | 12 | 93 | 13 | 93 | 1.62e-20 | 91.7 |
| MS.gene003302.t1 | AT3G53710 | 47.619 | 84 | 43 | 1 | 10 | 93 | 5 | 87 | 2.41e-20 | 91.7 |
| MS.gene003302.t1 | AT3G53710 | 47.619 | 84 | 43 | 1 | 10 | 93 | 5 | 87 | 2.41e-20 | 91.7 |
| MS.gene003302.t1 | AT3G53710 | 47.619 | 84 | 43 | 1 | 10 | 93 | 5 | 87 | 2.41e-20 | 91.7 |
| MS.gene003302.t1 | AT3G17660 | 36.522 | 115 | 55 | 2 | 12 | 126 | 19 | 115 | 3.02e-20 | 87.8 |
| MS.gene003302.t1 | AT1G48590 | 31.875 | 160 | 76 | 2 | 159 | 318 | 37 | 163 | 2.48e-19 | 84.0 |
| MS.gene003302.t1 | AT1G10870 | 37.226 | 137 | 64 | 5 | 21 | 141 | 479 | 609 | 1.94e-18 | 86.7 |
| MS.gene003302.t1 | AT1G10870 | 37.324 | 142 | 62 | 6 | 21 | 141 | 479 | 614 | 4.75e-18 | 85.5 |
| MS.gene003302.t1 | AT1G60860 | 35.135 | 148 | 74 | 5 | 21 | 152 | 479 | 620 | 5.44e-18 | 85.1 |
| MS.gene003302.t1 | AT1G60860 | 33.784 | 148 | 76 | 4 | 21 | 152 | 308 | 449 | 6.30e-18 | 84.7 |
| MS.gene003302.t1 | AT1G60860 | 35.135 | 148 | 74 | 5 | 21 | 152 | 368 | 509 | 6.64e-18 | 84.7 |
| MS.gene003302.t1 | AT5G13300 | 36.719 | 128 | 59 | 4 | 21 | 127 | 513 | 639 | 1.36e-17 | 84.0 |
| MS.gene003302.t1 | AT4G17890 | 38.614 | 101 | 57 | 3 | 12 | 111 | 16 | 112 | 2.20e-17 | 82.8 |
| MS.gene003302.t1 | AT4G17890 | 38.614 | 101 | 57 | 3 | 12 | 111 | 16 | 112 | 2.89e-17 | 82.0 |
| MS.gene003302.t1 | AT5G61980 | 50.685 | 73 | 33 | 2 | 21 | 91 | 510 | 581 | 4.48e-17 | 82.4 |
| MS.gene003302.t1 | AT3G17660 | 39.024 | 82 | 42 | 2 | 45 | 126 | 1 | 74 | 3.94e-13 | 67.4 |
Find 59 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAATGCTCCAGATCCTAAA+TGG | 0.282409 | 2.4:+59431759 | MS.gene003302:CDS |
| GCGATATGCAGATCGGAAAA+TGG | 0.304363 | 2.4:+59435085 | MS.gene003302:CDS |
| AAAACTATCCATAAAACTAT+TGG | 0.306608 | 2.4:-59433814 | None:intergenic |
| CCAAGGTTCAAAACAACATA+TGG | 0.331048 | 2.4:-59434212 | None:intergenic |
| TTGAAGGTGAAAGTGATTAA+AGG | 0.333055 | 2.4:+59434152 | MS.gene003302:CDS |
| ATAACATCTGCCGTGGCATT+TGG | 0.336417 | 2.4:+59435045 | MS.gene003302:CDS |
| CTGTCTGTTCCAGAGCATTA+TGG | 0.343313 | 2.4:+59434405 | MS.gene003302:CDS |
| TTTCTCCAGATTCAACGTTC+TGG | 0.348169 | 2.4:-59435194 | None:intergenic |
| GCATTATGGACAGCTGAAAT+TGG | 0.358744 | 2.4:+59434419 | MS.gene003302:CDS |
| AAGCTCCAGAACGTTGAATC+TGG | 0.361863 | 2.4:+59435189 | MS.gene003302:CDS |
| TTCTGCTAATTCAATTTATG+AGG | 0.373554 | 2.4:+59433406 | MS.gene003302:CDS |
| TACTCCTTATTACACTTGTC+TGG | 0.389046 | 2.4:-59434350 | None:intergenic |
| AGCAGCGTGCAAAGTTTATA+CGG | 0.390707 | 2.4:+59433477 | MS.gene003302:CDS |
| TTTGGAGATGCTGGAATGTT+TGG | 0.396363 | 2.4:+59435063 | MS.gene003302:CDS |
| CTGTCCAGACAAGTGTAATA+AGG | 0.398855 | 2.4:+59434346 | MS.gene003302:CDS |
| TGTCTGTGACATTGGATGAT+TGG | 0.409560 | 2.4:+59433339 | MS.gene003302:CDS |
| GAAGGATAATCGTGTTTGTT+CGG | 0.419454 | 2.4:+59431733 | MS.gene003302:CDS |
| AAATAGAGTTAGAACTTGAA+TGG | 0.423211 | 2.4:+59435214 | MS.gene003302:CDS |
| CCGGACACAATGCGCAAACT+AGG | 0.441935 | 2.4:-59433768 | None:intergenic |
| CCTAGTTTGCGCATTGTGTC+CGG | 0.444096 | 2.4:+59433768 | MS.gene003302:CDS |
| CTCATGACTAGCATCTGGTC+CGG | 0.451814 | 2.4:-59433456 | None:intergenic |
| ACCTACGCCCATTTAGGATC+TGG | 0.455132 | 2.4:-59431767 | None:intergenic |
| GAAGGTATGGTAGAATTCAT+TGG | 0.456937 | 2.4:+59434125 | MS.gene003302:CDS |
| TAGATGCAATGATAGAAGTC+GGG | 0.461894 | 2.4:+59433375 | MS.gene003302:CDS |
| AAGCACTAATTCAGAGAGAA+TGG | 0.486677 | 2.4:+59433839 | MS.gene003302:CDS |
| GCCGTGGCATTTGGAGATGC+TGG | 0.487446 | 2.4:+59435054 | MS.gene003302:CDS |
| TTCAGCTGTCCATAATGCTC+TGG | 0.487748 | 2.4:-59434414 | None:intergenic |
| GGAGTAATTTGAATCCAGTC+TGG | 0.491035 | 2.4:+59434367 | MS.gene003302:CDS |
| CGCTGCTCATGACTAGCATC+TGG | 0.493326 | 2.4:-59433461 | None:intergenic |
| AAGGAACAGATTTAGCCGTC+CGG | 0.524678 | 2.4:+59434171 | MS.gene003302:CDS |
| TTTATATGCTTAAAATGTTG+TGG | 0.530855 | 2.4:+59431994 | MS.gene003302:CDS |
| TGACGACAATGCACTTATTG+AGG | 0.532022 | 2.4:+59435116 | MS.gene003302:CDS |
| GAAAGATTTATTGCATCAGA+AGG | 0.532083 | 2.4:+59431715 | MS.gene003302:CDS |
| TAATGCTCCAGATCCTAAAT+GGG | 0.532391 | 2.4:+59431760 | MS.gene003302:CDS |
| AGGAACAGATTTAGCCGTCC+GGG | 0.537870 | 2.4:+59434172 | MS.gene003302:CDS |
| AGAATTCATTGGAATGTTGA+AGG | 0.546017 | 2.4:+59434136 | MS.gene003302:CDS |
| TCATGACTAGCATCTGGTCC+GGG | 0.549695 | 2.4:-59433455 | None:intergenic |
| TATGAGGCTTATATTCCTGA+AGG | 0.550636 | 2.4:+59433422 | MS.gene003302:CDS |
| GTTGTGACAACAGGAAGGTA+TGG | 0.551570 | 2.4:+59434112 | MS.gene003302:intron |
| GTAGATGCAATGATAGAAGT+CGG | 0.565326 | 2.4:+59433374 | MS.gene003302:CDS |
| CAAGGTTCAAAACAACATAT+GGG | 0.571327 | 2.4:-59434211 | None:intergenic |
| GCATATAAACACCCCAATGT+TGG | 0.573030 | 2.4:-59431980 | None:intergenic |
| CCTGAAGGATATACAAAACC+CGG | 0.576297 | 2.4:+59433437 | MS.gene003302:CDS |
| AGTCAAAATTATCGATGGAA+AGG | 0.577294 | 2.4:+59435146 | MS.gene003302:CDS |
| TGTGGTGTGCACAGAAGCCT+TGG | 0.582627 | 2.4:+59432012 | MS.gene003302:CDS |
| ATATGTTCTTCATTCCAGAC+TGG | 0.588794 | 2.4:-59434381 | None:intergenic |
| AGTGCAGTCAAAATTATCGA+TGG | 0.590563 | 2.4:+59435141 | MS.gene003302:CDS |
| AGCAACCAACCTGTGTGCCA+AGG | 0.592884 | 2.4:-59434229 | None:intergenic |
| TGATGATATAATGGGAGAAG+CGG | 0.594684 | 2.4:+59435002 | MS.gene003302:CDS |
| CCTTGGTACTCATATATCAA+AGG | 0.598849 | 2.4:+59432029 | MS.gene003302:CDS |
| TCCAGCATCTCCAAATGCCA+CGG | 0.612018 | 2.4:-59435055 | None:intergenic |
| GGTCACTTGACTTTATATCC+CGG | 0.614173 | 2.4:-59434190 | None:intergenic |
| ATGTTTGGCGATATGCAGAT+CGG | 0.618679 | 2.4:+59435078 | MS.gene003302:CDS |
| AGATGCAATGATAGAAGTCG+GGG | 0.621145 | 2.4:+59433376 | MS.gene003302:CDS |
| TTTCAGGTCTGCCAACATTG+GGG | 0.624782 | 2.4:+59431969 | MS.gene003302:intron |
| GTCACTGATAACATCTGCCG+TGG | 0.637761 | 2.4:+59435038 | MS.gene003302:CDS |
| ACTTGACTTTATATCCCGGA+CGG | 0.645865 | 2.4:-59434186 | None:intergenic |
| CCTTTGATATATGAGTACCA+AGG | 0.688448 | 2.4:-59432029 | None:intergenic |
| GATGCAATGATAGAAGTCGG+GGG | 0.750201 | 2.4:+59433377 | MS.gene003302:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAGTTTTCATTTTTATTA+TGG | - | chr2.4:59432072-59432091 | None:intergenic | 10.0% |
| !! | GAAAAATCATAAATTTGATT+TGG | + | chr2.4:59434307-59434326 | MS.gene003302:intron | 15.0% |
| !! | TAAAAATGAAAACTATTTAC+TGG | + | chr2.4:59432075-59432094 | MS.gene003302:intron | 15.0% |
| !! | TTTATTATGGTACATATTAA+TGG | - | chr2.4:59432059-59432078 | None:intergenic | 15.0% |
| !! | AAAACTATCCATAAAACTAT+TGG | - | chr2.4:59433817-59433836 | None:intergenic | 20.0% |
| !! | AAAAGATGCATACAAAAATT+TGG | - | chr2.4:59433923-59433942 | None:intergenic | 20.0% |
| !! | ACAAACAATATTTGATATCT+AGG | + | chr2.4:59434734-59434753 | MS.gene003302:intron | 20.0% |
| !! | ATCCTAATACAAACAAAAAT+AGG | - | chr2.4:59433243-59433262 | None:intergenic | 20.0% |
| !! | CCAAATAGTAAAAAGTTAAA+AGG | - | chr2.4:59433111-59433130 | None:intergenic | 20.0% |
| !! | TAATTGTATGCTAAACTTTA+AGG | - | chr2.4:59433012-59433031 | None:intergenic | 20.0% |
| !! | TATCAACTAATCTTATAAAC+TGG | + | chr2.4:59434938-59434957 | MS.gene003302:intron | 20.0% |
| !! | TATGAAAAAATTAACAGTCT+AGG | - | chr2.4:59432973-59432992 | None:intergenic | 20.0% |
| !! | TTAAAATGGTAGTTAACTAA+AGG | - | chr2.4:59433696-59433715 | None:intergenic | 20.0% |
| !! | TTATAAACAGAACTAAAATG+AGG | - | chr2.4:59432738-59432757 | None:intergenic | 20.0% |
| !! | TTTATATGCTTAAAATGTTG+TGG | + | chr2.4:59431994-59432013 | MS.gene003302:CDS | 20.0% |
| !!! | AAAGATATAAGATTTTCAAG+AGG | - | chr2.4:59433557-59433576 | None:intergenic | 20.0% |
| !!! | AAATTTGTTGAAGACAAAAA+TGG | - | chr2.4:59432203-59432222 | None:intergenic | 20.0% |
| !!! | AATTTTTGTATGCATCTTTT+TGG | + | chr2.4:59433923-59433942 | MS.gene003302:intron | 20.0% |
| !!! | ACATCTTTATTTATTTCCAA+TGG | - | chr2.4:59434625-59434644 | None:intergenic | 20.0% |
| !!! | ATTTTTGTATGCATCTTTTT+GGG | + | chr2.4:59433924-59433943 | MS.gene003302:intron | 20.0% |
| !!! | CAGATTTTATGTTAATTTTC+AGG | + | chr2.4:59431953-59431972 | MS.gene003302:intron | 20.0% |
| !!! | CCTTTTAACTTTTTACTATT+TGG | + | chr2.4:59433108-59433127 | MS.gene003302:intron | 20.0% |
| ! | AAATAGAGTTAGAACTTGAA+TGG | + | chr2.4:59435214-59435233 | MS.gene003302:CDS | 25.0% |
| ! | ATTTCTCACAATAAACTTGT+AGG | - | chr2.4:59433977-59433996 | None:intergenic | 25.0% |
| ! | TTAGTGTAATAGGAAAAACA+AGG | - | chr2.4:59433195-59433214 | None:intergenic | 25.0% |
| ! | TTCTGCTAATTCAATTTATG+AGG | + | chr2.4:59433406-59433425 | MS.gene003302:CDS | 25.0% |
| ! | TTGTGGTTTATATAAATGTG+TGG | + | chr2.4:59431814-59431833 | MS.gene003302:intron | 25.0% |
| !! | AAGAGAAGGTAACTTTTAAT+TGG | - | chr2.4:59434581-59434600 | None:intergenic | 25.0% |
| !! | CAAAAATAGGTCACATTTTA+TGG | - | chr2.4:59433230-59433249 | None:intergenic | 25.0% |
| !! | GTTCTCATTTTATGTACTTA+AGG | + | chr2.4:59432924-59432943 | MS.gene003302:intron | 25.0% |
| !! | TGCATTTCTTACAAAAGTTT+TGG | - | chr2.4:59432266-59432285 | None:intergenic | 25.0% |
| !! | TGTTTTGTATCCTTTAACAA+TGG | + | chr2.4:59434483-59434502 | MS.gene003302:intron | 25.0% |
| !! | TTGATTGATAACTCATGTTT+CGG | + | chr2.4:59432229-59432248 | MS.gene003302:intron | 25.0% |
| !! | TTTTCTGCTGATGATATAAT+GGG | + | chr2.4:59434994-59435013 | MS.gene003302:CDS | 25.0% |
| !! | TTTTTCTGCTGATGATATAA+TGG | + | chr2.4:59434993-59435012 | MS.gene003302:CDS | 25.0% |
| !!! | AACTTTTTACTATTTGGTGT+GGG | + | chr2.4:59433114-59433133 | MS.gene003302:intron | 25.0% |
| !!! | AAGTTCTTCCAATAGTTTTA+TGG | + | chr2.4:59433806-59433825 | MS.gene003302:CDS | 25.0% |
| !!! | AATTTTAGTTGTATTCATCG+AGG | + | chr2.4:59432756-59432775 | MS.gene003302:intron | 25.0% |
| !!! | AGGTAACTTTTAATTGGATT+AGG | - | chr2.4:59434575-59434594 | None:intergenic | 25.0% |
| !!! | AGTTATTTTCCTATAGCTTA+AGG | - | chr2.4:59431881-59431900 | None:intergenic | 25.0% |
| !!! | ATAAATTTGATTTGGTGCTA+TGG | + | chr2.4:59434315-59434334 | MS.gene003302:intron | 25.0% |
| !!! | CAGCATTATTTTTTACTTAC+AGG | + | chr2.4:59433313-59433332 | MS.gene003302:intron | 25.0% |
| !!! | GACCTATTTTTGTTTGTATT+AGG | + | chr2.4:59433238-59433257 | MS.gene003302:intron | 25.0% |
| !!! | GTTATTTTCCTATAGCTTAA+GGG | - | chr2.4:59431880-59431899 | None:intergenic | 25.0% |
| !!! | TAACTTTTTACTATTTGGTG+TGG | + | chr2.4:59433113-59433132 | MS.gene003302:intron | 25.0% |
| !!! | TGATTTGATTTGAGATAAAC+AGG | - | chr2.4:59434894-59434913 | None:intergenic | 25.0% |
| ACTGAAGATAAAATTGGGAA+GGG | - | chr2.4:59434865-59434884 | None:intergenic | 30.0% | |
| AGAATTCATTGGAATGTTGA+AGG | + | chr2.4:59434136-59434155 | MS.gene003302:CDS | 30.0% | |
| AGGGAACAAAGAATAAGAAA+AGG | - | chr2.4:59434846-59434865 | None:intergenic | 30.0% | |
| AGTCAAAATTATCGATGGAA+AGG | + | chr2.4:59435146-59435165 | MS.gene003302:CDS | 30.0% | |
| ATCATGTTGTCCATTGTTAA+AGG | - | chr2.4:59434496-59434515 | None:intergenic | 30.0% | |
| ATTAAAGTTCACCCAAGAAA+AGG | - | chr2.4:59431850-59431869 | None:intergenic | 30.0% | |
| CAAAGAATAAGAAAAGGAAG+AGG | - | chr2.4:59434840-59434859 | None:intergenic | 30.0% | |
| CAACATCATGTTAGTGTAAT+AGG | - | chr2.4:59433205-59433224 | None:intergenic | 30.0% | |
| CAAGGTTCAAAACAACATAT+GGG | - | chr2.4:59434214-59434233 | None:intergenic | 30.0% | |
| CGAAATAACCACGATTAAAA+TGG | - | chr2.4:59433710-59433729 | None:intergenic | 30.0% | |
| CTATTACACTAACATGATGT+TGG | + | chr2.4:59433203-59433222 | MS.gene003302:intron | 30.0% | |
| GAAAGATTTATTGCATCAGA+AGG | + | chr2.4:59431715-59431734 | MS.gene003302:CDS | 30.0% | |
| GTAACATGCAAATATTAGCT+TGG | - | chr2.4:59433037-59433056 | None:intergenic | 30.0% | |
| GTTGCAAGTTATAACCAATA+AGG | - | chr2.4:59434662-59434681 | None:intergenic | 30.0% | |
| TAAACACTAGTACACTACAT+AGG | - | chr2.4:59432582-59432601 | None:intergenic | 30.0% | |
| TAACCAATAAGGAACTGTAT+TGG | - | chr2.4:59434651-59434670 | None:intergenic | 30.0% | |
| TACTAGTGTTTATAAAGCCT+GGG | + | chr2.4:59432590-59432609 | MS.gene003302:intron | 30.0% | |
| TTAAACTCTCAGTTCTTAGT+AGG | + | chr2.4:59432705-59432724 | MS.gene003302:intron | 30.0% | |
| TTATTTCCAATGGTGAGAAT+GGG | - | chr2.4:59434615-59434634 | None:intergenic | 30.0% | |
| TTGAAGGTGAAAGTGATTAA+AGG | + | chr2.4:59434152-59434171 | MS.gene003302:CDS | 30.0% | |
| TTTATTTCCAATGGTGAGAA+TGG | - | chr2.4:59434616-59434635 | None:intergenic | 30.0% | |
| TTTCTGATTAGAGTGAACTA+AGG | - | chr2.4:59432129-59432148 | None:intergenic | 30.0% | |
| ! | ATGATTGGAAGATCTTTTAC+AGG | + | chr2.4:59431680-59431699 | MS.gene003302:CDS | 30.0% |
| ! | ATTAGGTTGCTTGCAATAAA+TGG | - | chr2.4:59434558-59434577 | None:intergenic | 30.0% |
| ! | CACTGACTGAAGATAAAATT+GGG | - | chr2.4:59434870-59434889 | None:intergenic | 30.0% |
| ! | CTTTCGTTAGTGATTTTGTT+GGG | + | chr2.4:59434074-59434093 | MS.gene003302:intron | 30.0% |
| ! | TATAACTTGCAACAACTTGA+AGG | + | chr2.4:59434669-59434688 | MS.gene003302:intron | 30.0% |
| ! | TCACTGACTGAAGATAAAAT+TGG | - | chr2.4:59434871-59434890 | None:intergenic | 30.0% |
| !! | GATAGTTCATTAGTTTGTGT+TGG | + | chr2.4:59432424-59432443 | MS.gene003302:intron | 30.0% |
| !! | GTTAACTACCATTTTAATCG+TGG | + | chr2.4:59433699-59433718 | MS.gene003302:intron | 30.0% |
| !! | TCGGTTTTGTAAGTTTAGTT+AGG | + | chr2.4:59432631-59432650 | MS.gene003302:intron | 30.0% |
| !!! | ACTTGATAGATTGCTTTTTC+CGG | - | chr2.4:59433790-59433809 | None:intergenic | 30.0% |
| AAGCACTAATTCAGAGAGAA+TGG | + | chr2.4:59433839-59433858 | MS.gene003302:CDS | 35.0% | |
| AATGCCAACCTCTTAGAATT+TGG | - | chr2.4:59432663-59432682 | None:intergenic | 35.0% | |
| ACCAGAATGAACTAGGATTA+GGG | + | chr2.4:59433055-59433074 | MS.gene003302:intron | 35.0% | |
| ACCCAAGAAAAGGATGAAAA+TGG | - | chr2.4:59431840-59431859 | None:intergenic | 35.0% | |
| AGTGCAGTCAAAATTATCGA+TGG | + | chr2.4:59435141-59435160 | MS.gene003302:CDS | 35.0% | |
| ATATGTTCTTCATTCCAGAC+TGG | - | chr2.4:59434384-59434403 | None:intergenic | 35.0% | |
| ATGCCAACCTCTTAGAATTT+GGG | - | chr2.4:59432662-59432681 | None:intergenic | 35.0% | |
| CAAGATAAAGAGAGTAAGTG+AGG | - | chr2.4:59434764-59434783 | None:intergenic | 35.0% | |
| CAGTTTCCCAAGGAAATATA+TGG | - | chr2.4:59434262-59434281 | None:intergenic | 35.0% | |
| CCAAGGTTCAAAACAACATA+TGG | - | chr2.4:59434215-59434234 | None:intergenic | 35.0% | |
| CCTTGGTACTCATATATCAA+AGG | + | chr2.4:59432029-59432048 | MS.gene003302:CDS | 35.0% | |
| CCTTTGATATATGAGTACCA+AGG | - | chr2.4:59432032-59432051 | None:intergenic | 35.0% | |
| CTCACTTACTCTCTTTATCT+TGG | + | chr2.4:59434762-59434781 | MS.gene003302:intron | 35.0% | |
| CTCTTGCCATATATTTCCTT+GGG | + | chr2.4:59434253-59434272 | MS.gene003302:intron | 35.0% | |
| CTGATATTAGTTGTGACAAC+AGG | + | chr2.4:59434103-59434122 | MS.gene003302:intron | 35.0% | |
| CTTCATCATTGTCTACTTCA+TGG | - | chr2.4:59433585-59433604 | None:intergenic | 35.0% | |
| CTTCCAATACAGTTCCTTAT+TGG | + | chr2.4:59434645-59434664 | MS.gene003302:intron | 35.0% | |
| GAAGAGTGAATGAATGAAAC+AGG | - | chr2.4:59433089-59433108 | None:intergenic | 35.0% | |
| GAAGGATAATCGTGTTTGTT+CGG | + | chr2.4:59431733-59431752 | MS.gene003302:CDS | 35.0% | |
| GACTGAAGATAAAATTGGGA+AGG | - | chr2.4:59434866-59434885 | None:intergenic | 35.0% | |
| GAGTTTGAACTCAATGACTT+TGG | - | chr2.4:59432825-59432844 | None:intergenic | 35.0% | |
| GTACTAGTGTTTATAAAGCC+TGG | + | chr2.4:59432589-59432608 | MS.gene003302:intron | 35.0% | |
| GTAGATGCAATGATAGAAGT+CGG | + | chr2.4:59433374-59433393 | MS.gene003302:CDS | 35.0% | |
| TAAACTTGTAGGCTTTCATC+TGG | - | chr2.4:59433966-59433985 | None:intergenic | 35.0% | |
| TAAATGGAACTGGCAAAATG+AGG | - | chr2.4:59434542-59434561 | None:intergenic | 35.0% | |
| TAATGCTCCAGATCCTAAAT+GGG | + | chr2.4:59431760-59431779 | MS.gene003302:CDS | 35.0% | |
| TACCAGAATGAACTAGGATT+AGG | + | chr2.4:59433054-59433073 | MS.gene003302:intron | 35.0% | |
| TACTCCTTATTACACTTGTC+TGG | - | chr2.4:59434353-59434372 | None:intergenic | 35.0% | |
| TAGATGCAATGATAGAAGTC+GGG | + | chr2.4:59433375-59433394 | MS.gene003302:CDS | 35.0% | |
| TATGAGGCTTATATTCCTGA+AGG | + | chr2.4:59433422-59433441 | MS.gene003302:CDS | 35.0% | |
| TATTAGTTGTGACAACAGGA+AGG | + | chr2.4:59434107-59434126 | MS.gene003302:intron | 35.0% | |
| TCTCTTGCCATATATTTCCT+TGG | + | chr2.4:59434252-59434271 | MS.gene003302:intron | 35.0% | |
| TGAATATGCCCTTAAGCTAT+AGG | + | chr2.4:59431869-59431888 | MS.gene003302:intron | 35.0% | |
| TTGCTTGCAATAAATGGAAC+TGG | - | chr2.4:59434552-59434571 | None:intergenic | 35.0% | |
| ! | AACCTCTTAGAATTTGGGTT+GGG | - | chr2.4:59432657-59432676 | None:intergenic | 35.0% |
| ! | GAAGGTATGGTAGAATTCAT+TGG | + | chr2.4:59434125-59434144 | MS.gene003302:CDS | 35.0% |
| ! | GCTTTCGTTAGTGATTTTGT+TGG | + | chr2.4:59434073-59434092 | MS.gene003302:intron | 35.0% |
| ! | TGATGATATAATGGGAGAAG+CGG | + | chr2.4:59435002-59435021 | MS.gene003302:CDS | 35.0% |
| !! | ACTTACAAAACCGACTTGTA+AGG | - | chr2.4:59432625-59432644 | None:intergenic | 35.0% |
| !! | GCCATTTTCATCCTTTTCTT+GGG | + | chr2.4:59431836-59431855 | MS.gene003302:intron | 35.0% |
| !!! | CCATATGTTGTTTTGAACCT+TGG | + | chr2.4:59434212-59434231 | MS.gene003302:CDS | 35.0% |
| !!! | TACTGGTTTTCTCATTGTTG+TGG | + | chr2.4:59432092-59432111 | MS.gene003302:intron | 35.0% |
| AAACATGTCTCGTGAATGTC+AGG | - | chr2.4:59432359-59432378 | None:intergenic | 40.0% | |
| AACCTAATACCGCAATTAGG+TGG | - | chr2.4:59432480-59432499 | None:intergenic | 40.0% | |
| AAGAAATGCATCGCGTGATA+TGG | + | chr2.4:59432276-59432295 | MS.gene003302:intron | 40.0% | |
| ACCACAAAAATCATGAGTGC+AGG | - | chr2.4:59431801-59431820 | None:intergenic | 40.0% | |
| ACCCTAATCCTAGTTCATTC+TGG | - | chr2.4:59433059-59433078 | None:intergenic | 40.0% | |
| ACTTGACTTTATATCCCGGA+CGG | - | chr2.4:59434189-59434208 | None:intergenic | 40.0% | |
| AGATGCAATGATAGAAGTCG+GGG | + | chr2.4:59433376-59433395 | MS.gene003302:CDS | 40.0% | |
| AGCAGCGTGCAAAGTTTATA+CGG | + | chr2.4:59433477-59433496 | MS.gene003302:CDS | 40.0% | |
| ATGTTTGGCGATATGCAGAT+CGG | + | chr2.4:59435078-59435097 | MS.gene003302:CDS | 40.0% | |
| CAACCTCTTAGAATTTGGGT+TGG | - | chr2.4:59432658-59432677 | None:intergenic | 40.0% | |
| CATTCTGCTGTTCTTTCAAC+TGG | + | chr2.4:59433660-59433679 | MS.gene003302:intron | 40.0% | |
| CCTGAAGGATATACAAAACC+CGG | + | chr2.4:59433437-59433456 | MS.gene003302:CDS | 40.0% | |
| CTGTCCAGACAAGTGTAATA+AGG | + | chr2.4:59434346-59434365 | MS.gene003302:CDS | 40.0% | |
| GCATATAAACACCCCAATGT+TGG | - | chr2.4:59431983-59432002 | None:intergenic | 40.0% | |
| GCATGTTACCAGAATGAACT+AGG | + | chr2.4:59433048-59433067 | MS.gene003302:intron | 40.0% | |
| GCATTATGGACAGCTGAAAT+TGG | + | chr2.4:59434419-59434438 | MS.gene003302:CDS | 40.0% | |
| GGAGTAATTTGAATCCAGTC+TGG | + | chr2.4:59434367-59434386 | MS.gene003302:CDS | 40.0% | |
| GGTCACTTGACTTTATATCC+CGG | - | chr2.4:59434193-59434212 | None:intergenic | 40.0% | |
| GTAATGCTCCAGATCCTAAA+TGG | + | chr2.4:59431759-59431778 | MS.gene003302:CDS | 40.0% | |
| TAAAAAGCAGCAGTTTCCCA+AGG | - | chr2.4:59434272-59434291 | None:intergenic | 40.0% | |
| TAACACCCTAGGTCTAAAGA+AGG | + | chr2.4:59432782-59432801 | MS.gene003302:intron | 40.0% | |
| TCATTGTGTTGGGTGCAAAA+GGG | + | chr2.4:59432525-59432544 | MS.gene003302:intron | 40.0% | |
| TCCAACACCTTCATTGTGTT+GGG | + | chr2.4:59432515-59432534 | MS.gene003302:intron | 40.0% | |
| TGACGACAATGCACTTATTG+AGG | + | chr2.4:59435116-59435135 | MS.gene003302:CDS | 40.0% | |
| TGCTTCCTTCTTTAGACCTA+GGG | - | chr2.4:59432790-59432809 | None:intergenic | 40.0% | |
| TGTCTGTGACATTGGATGAT+TGG | + | chr2.4:59433339-59433358 | MS.gene003302:CDS | 40.0% | |
| TTCATTGTGTTGGGTGCAAA+AGG | + | chr2.4:59432524-59432543 | MS.gene003302:intron | 40.0% | |
| TTGCTTCCTTCTTTAGACCT+AGG | - | chr2.4:59432791-59432810 | None:intergenic | 40.0% | |
| TTTCTCCAGATTCAACGTTC+TGG | - | chr2.4:59435197-59435216 | None:intergenic | 40.0% | |
| TTTGGAGATGCTGGAATGTT+TGG | + | chr2.4:59435063-59435082 | MS.gene003302:CDS | 40.0% | |
| ! | CAACCCAAATTCTAAGAGGT+TGG | + | chr2.4:59432656-59432675 | MS.gene003302:intron | 40.0% |
| ! | TAGATTAGCTCCTTCCGTAA+GGG | + | chr2.4:59434796-59434815 | MS.gene003302:intron | 40.0% |
| ! | TCCTGCACTCATGATTTTTG+TGG | + | chr2.4:59431797-59431816 | MS.gene003302:intron | 40.0% |
| ! | TTAGATTAGCTCCTTCCGTA+AGG | + | chr2.4:59434795-59434814 | MS.gene003302:intron | 40.0% |
| ! | TTTTGCACCCAACACAATGA+AGG | - | chr2.4:59432525-59432544 | None:intergenic | 40.0% |
| !! | ACAGGTTTTGTCTGTGACAT+TGG | + | chr2.4:59433331-59433350 | MS.gene003302:intron | 40.0% |
| !! | GGATGTGTCTATCAAGTTGA+TGG | + | chr2.4:59433259-59433278 | MS.gene003302:intron | 40.0% |
| !! | GGCCATTTTCATCCTTTTCT+TGG | + | chr2.4:59431835-59431854 | MS.gene003302:intron | 40.0% |
| !! | TCCTCTAGTTCTATCCCTTA+CGG | - | chr2.4:59434813-59434832 | None:intergenic | 40.0% |
| !!! | ATTTTCAGGTCTGCCAACAT+TGG | + | chr2.4:59431967-59431986 | MS.gene003302:intron | 40.0% |
| !!! | TTTTCAGGTCTGCCAACATT+GGG | + | chr2.4:59431968-59431987 | MS.gene003302:intron | 40.0% |
| AAATGCATCGCGTGATATGG+AGG | + | chr2.4:59432279-59432298 | MS.gene003302:intron | 45.0% | |
| AACTGGCAAAATGAGGATGG+AGG | - | chr2.4:59434535-59434554 | None:intergenic | 45.0% | |
| AAGCTCCAGAACGTTGAATC+TGG | + | chr2.4:59435189-59435208 | MS.gene003302:CDS | 45.0% | |
| AAGGAACAGATTTAGCCGTC+CGG | + | chr2.4:59434171-59434190 | MS.gene003302:CDS | 45.0% | |
| ACGCTGAGTGACAAATGACA+TGG | - | chr2.4:59432897-59432916 | None:intergenic | 45.0% | |
| AGCCACCTAATTGCGGTATT+AGG | + | chr2.4:59432475-59432494 | MS.gene003302:intron | 45.0% | |
| ATAACATCTGCCGTGGCATT+TGG | + | chr2.4:59435045-59435064 | MS.gene003302:CDS | 45.0% | |
| CACTACATAGGCCTATCTCT+AGG | - | chr2.4:59432570-59432589 | None:intergenic | 45.0% | |
| CGAAAAACCTACGCCCATTT+AGG | - | chr2.4:59431776-59431795 | None:intergenic | 45.0% | |
| CTCCAACACCTTCATTGTGT+TGG | + | chr2.4:59432514-59432533 | MS.gene003302:intron | 45.0% | |
| GATGCAATGATAGAAGTCGG+GGG | + | chr2.4:59433377-59433396 | MS.gene003302:CDS | 45.0% | |
| GCGATATGCAGATCGGAAAA+TGG | + | chr2.4:59435085-59435104 | MS.gene003302:CDS | 45.0% | |
| GGCAACCTAATACCGCAATT+AGG | - | chr2.4:59432483-59432502 | None:intergenic | 45.0% | |
| GTTGTGACAACAGGAAGGTA+TGG | + | chr2.4:59434112-59434131 | MS.gene003302:intron | 45.0% | |
| TCCGTAAGGGATAGAACTAG+AGG | + | chr2.4:59434809-59434828 | MS.gene003302:intron | 45.0% | |
| TGGAACTGGCAAAATGAGGA+TGG | - | chr2.4:59434538-59434557 | None:intergenic | 45.0% | |
| TTCAGCTGTCCATAATGCTC+TGG | - | chr2.4:59434417-59434436 | None:intergenic | 45.0% | |
| ! | ACCCAACACAATGAAGGTGT+TGG | - | chr2.4:59432519-59432538 | None:intergenic | 45.0% |
| ! | ATCGTGGTTATTTCGACTGC+AGG | + | chr2.4:59433715-59433734 | MS.gene003302:intron | 45.0% |
| ! | CTGTCTGTTCCAGAGCATTA+TGG | + | chr2.4:59434405-59434424 | MS.gene003302:CDS | 45.0% |
| ! | TTTCAGGTCTGCCAACATTG+GGG | + | chr2.4:59431969-59431988 | MS.gene003302:intron | 45.0% |
| !! | CAACACAATGAAGGTGTTGG+AGG | - | chr2.4:59432516-59432535 | None:intergenic | 45.0% |
| !! | CATCGAGGTTTTAACACCCT+AGG | + | chr2.4:59432771-59432790 | MS.gene003302:intron | 45.0% |
| !! | CCGGGTTTTGTATATCCTTC+AGG | - | chr2.4:59433440-59433459 | None:intergenic | 45.0% |
| !! | CTAGTTCTATCCCTTACGGA+AGG | - | chr2.4:59434809-59434828 | None:intergenic | 45.0% |
| !! | TGTTTTGAACCTTGGCACAC+AGG | + | chr2.4:59434220-59434239 | MS.gene003302:CDS | 45.0% |
| AGGAACAGATTTAGCCGTCC+GGG | + | chr2.4:59434172-59434191 | MS.gene003302:CDS | 50.0% | |
| CGCAATTAGGTGGCTAGAGA+CGG | - | chr2.4:59432470-59432489 | None:intergenic | 50.0% | |
| CGTCTCTAGCCACCTAATTG+CGG | + | chr2.4:59432468-59432487 | MS.gene003302:intron | 50.0% | |
| CTCATGACTAGCATCTGGTC+CGG | - | chr2.4:59433459-59433478 | None:intergenic | 50.0% | |
| GCAGCTCTCACCTTACAAGT+CGG | + | chr2.4:59432612-59432631 | MS.gene003302:intron | 50.0% | |
| GCTACACCCATTCTCACCAT+TGG | + | chr2.4:59434606-59434625 | MS.gene003302:intron | 50.0% | |
| GGCCCAACCCAAATTCTAAG+AGG | + | chr2.4:59432652-59432671 | MS.gene003302:intron | 50.0% | |
| GGGTGTAGCTGTGTAAGAGA+AGG | - | chr2.4:59434595-59434614 | None:intergenic | 50.0% | |
| GTCACTGATAACATCTGCCG+TGG | + | chr2.4:59435038-59435057 | MS.gene003302:CDS | 50.0% | |
| TCATGACTAGCATCTGGTCC+GGG | - | chr2.4:59433458-59433477 | None:intergenic | 50.0% | |
| TCCAGATCCTAAATGGGCGT+AGG | + | chr2.4:59431766-59431785 | MS.gene003302:intron | 50.0% | |
| TCCAGCATCTCCAAATGCCA+CGG | - | chr2.4:59435058-59435077 | None:intergenic | 50.0% | |
| TTGAACCTTGGCACACAGGT+TGG | + | chr2.4:59434224-59434243 | MS.gene003302:intron | 50.0% | |
| TTGTGTTGGGTGCAAAAGGG+TGG | + | chr2.4:59432528-59432547 | MS.gene003302:intron | 50.0% | |
| ! | ACCTACGCCCATTTAGGATC+TGG | - | chr2.4:59431770-59431789 | None:intergenic | 50.0% |
| ! | CCTAGTTTGCGCATTGTGTC+CGG | + | chr2.4:59433768-59433787 | MS.gene003302:CDS | 50.0% |
| ! | GGTGTTGGAGGCTGCAATAA+AGG | - | chr2.4:59432504-59432523 | None:intergenic | 50.0% |
| AGAGACGGACGCAATGAAGG+CGG | - | chr2.4:59432455-59432474 | None:intergenic | 55.0% | |
| AGCAACCAACCTGTGTGCCA+AGG | - | chr2.4:59434232-59434251 | None:intergenic | 55.0% | |
| AGGCCTATCTCTAGGCAGTG+TGG | - | chr2.4:59432562-59432581 | None:intergenic | 55.0% | |
| CCGGACACAATGCGCAAACT+AGG | - | chr2.4:59433771-59433790 | None:intergenic | 55.0% | |
| CGCTGCTCATGACTAGCATC+TGG | - | chr2.4:59433464-59433483 | None:intergenic | 55.0% | |
| GCTAGAGACGGACGCAATGA+AGG | - | chr2.4:59432458-59432477 | None:intergenic | 55.0% | |
| GGCCTATCTCTAGGCAGTGT+GGG | - | chr2.4:59432561-59432580 | None:intergenic | 55.0% | |
| GTCCCACACTGCCTAGAGAT+AGG | + | chr2.4:59432556-59432575 | MS.gene003302:intron | 55.0% | |
| TGTGCACGCGCGCGTTAAAT+AGG | + | chr2.4:59433155-59433174 | MS.gene003302:intron | 55.0% | |
| TGTGGTGTGCACAGAAGCCT+TGG | + | chr2.4:59432012-59432031 | MS.gene003302:CDS | 55.0% | |
| TTGTAAGGTGAGAGCTGCCC+AGG | - | chr2.4:59432610-59432629 | None:intergenic | 55.0% | |
| AGCGCCAGAGAGCAAGAGAG+GGG | - | chr2.4:59433621-59433640 | None:intergenic | 60.0% | |
| CAGCGCCAGAGAGCAAGAGA+GGG | - | chr2.4:59433622-59433641 | None:intergenic | 60.0% | |
| GAGACGGACGCAATGAAGGC+GGG | - | chr2.4:59432454-59432473 | None:intergenic | 60.0% | |
| GCCGTGGCATTTGGAGATGC+TGG | + | chr2.4:59435054-59435073 | MS.gene003302:CDS | 60.0% | |
| TCAGCGCCAGAGAGCAAGAG+AGG | - | chr2.4:59433623-59433642 | None:intergenic | 60.0% | |
| CCAGAGAGCAAGAGAGGGGG+AGG | - | chr2.4:59433617-59433636 | None:intergenic | 65.0% | |
| CCTCCCCCTCTCTTGCTCTC+TGG | + | chr2.4:59433614-59433633 | MS.gene003302:intron | 65.0% | |
| GCGCCAGAGAGCAAGAGAGG+GGG | - | chr2.4:59433620-59433639 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 59431680 | 59435254 | 59431680 | ID=MS.gene003302 |
| chr2.4 | mRNA | 59431680 | 59435254 | 59431680 | ID=MS.gene003302.t1;Parent=MS.gene003302 |
| chr2.4 | exon | 59431680 | 59431783 | 59431680 | ID=MS.gene003302.t1.exon1;Parent=MS.gene003302.t1 |
| chr2.4 | CDS | 59431680 | 59431783 | 59431680 | ID=cds.MS.gene003302.t1;Parent=MS.gene003302.t1 |
| chr2.4 | exon | 59431975 | 59432050 | 59431975 | ID=MS.gene003302.t1.exon2;Parent=MS.gene003302.t1 |
| chr2.4 | CDS | 59431975 | 59432050 | 59431975 | ID=cds.MS.gene003302.t1;Parent=MS.gene003302.t1 |
| chr2.4 | exon | 59433335 | 59433498 | 59433335 | ID=MS.gene003302.t1.exon3;Parent=MS.gene003302.t1 |
| chr2.4 | CDS | 59433335 | 59433498 | 59433335 | ID=cds.MS.gene003302.t1;Parent=MS.gene003302.t1 |
| chr2.4 | exon | 59433737 | 59433860 | 59433737 | ID=MS.gene003302.t1.exon4;Parent=MS.gene003302.t1 |
| chr2.4 | CDS | 59433737 | 59433860 | 59433737 | ID=cds.MS.gene003302.t1;Parent=MS.gene003302.t1 |
| chr2.4 | exon | 59434125 | 59434241 | 59434125 | ID=MS.gene003302.t1.exon5;Parent=MS.gene003302.t1 |
| chr2.4 | CDS | 59434125 | 59434241 | 59434125 | ID=cds.MS.gene003302.t1;Parent=MS.gene003302.t1 |
| chr2.4 | exon | 59434345 | 59434440 | 59434345 | ID=MS.gene003302.t1.exon6;Parent=MS.gene003302.t1 |
| chr2.4 | CDS | 59434345 | 59434440 | 59434345 | ID=cds.MS.gene003302.t1;Parent=MS.gene003302.t1 |
| chr2.4 | exon | 59434973 | 59435254 | 59434973 | ID=MS.gene003302.t1.exon7;Parent=MS.gene003302.t1 |
| chr2.4 | CDS | 59434973 | 59435254 | 59434973 | ID=cds.MS.gene003302.t1;Parent=MS.gene003302.t1 |
| Gene Sequence |
| Protein sequence |
