Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058831.t1 | AET04392.2 | 98.1 | 320 | 6 | 0 | 11 | 330 | 3 | 322 | 4.70E-176 | 627.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058831.t1 | Q9FVJ3 | 72.3 | 328 | 82 | 2 | 11 | 329 | 9 | 336 | 1.5e-135 | 483.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058831.t1 | G7L835 | 98.1 | 320 | 6 | 0 | 11 | 330 | 3 | 322 | 3.4e-176 | 627.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058821 | MS.gene058831 | 0.978283 | 1.68E-145 | -1.69E-46 |
| MS.gene058831 | MS.gene27907 | 0.9509 | 6.31E-109 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005346 | MS.gene058831 | PPI |
| MS.gene023667 | MS.gene058831 | PPI |
| MS.gene90413 | MS.gene058831 | PPI |
| MS.gene050322 | MS.gene058831 | PPI |
| MS.gene007227 | MS.gene058831 | PPI |
| MS.gene056211 | MS.gene058831 | PPI |
| MS.gene35396 | MS.gene058831 | PPI |
| MS.gene65789 | MS.gene058831 | PPI |
| MS.gene74542 | MS.gene058831 | PPI |
| MS.gene058831 | MS.gene023667 | PPI |
| MS.gene40748 | MS.gene058831 | PPI |
| MS.gene034468 | MS.gene058831 | PPI |
| MS.gene02100 | MS.gene058831 | PPI |
| MS.gene016627 | MS.gene058831 | PPI |
| MS.gene84339 | MS.gene058831 | PPI |
| MS.gene47863 | MS.gene058831 | PPI |
| MS.gene039700 | MS.gene058831 | PPI |
| MS.gene03069 | MS.gene058831 | PPI |
| MS.gene66767 | MS.gene058831 | PPI |
| MS.gene43051 | MS.gene058831 | PPI |
| MS.gene058831 | MS.gene03069 | PPI |
| MS.gene003302 | MS.gene058831 | PPI |
| MS.gene27907 | MS.gene058831 | PPI |
| MS.gene058831 | MS.gene071746 | PPI |
| MS.gene20985 | MS.gene058831 | PPI |
| MS.gene85519 | MS.gene058831 | PPI |
| MS.gene058831 | MS.gene47863 | PPI |
| MS.gene058821 | MS.gene058831 | PPI |
| MS.gene90412 | MS.gene058831 | PPI |
| MS.gene21056 | MS.gene058831 | PPI |
| MS.gene92445 | MS.gene058831 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058831.t1 | MTR_8g088320 | 97.819 | 321 | 7 | 0 | 10 | 330 | 2 | 322 | 0.0 | 654 |
| MS.gene058831.t1 | MTR_2g030230 | 78.419 | 329 | 69 | 2 | 2 | 330 | 3 | 329 | 0.0 | 537 |
| MS.gene058831.t1 | MTR_3g017500 | 45.559 | 349 | 152 | 3 | 17 | 328 | 21 | 368 | 2.19e-112 | 331 |
| MS.gene058831.t1 | MTR_3g017500 | 45.559 | 349 | 152 | 3 | 17 | 328 | 51 | 398 | 8.08e-112 | 330 |
| MS.gene058831.t1 | MTR_8g038400 | 44.571 | 350 | 157 | 2 | 16 | 328 | 16 | 365 | 2.86e-109 | 323 |
| MS.gene058831.t1 | MTR_8g107340 | 39.205 | 176 | 106 | 1 | 153 | 328 | 1 | 175 | 5.33e-42 | 144 |
| MS.gene058831.t1 | MTR_6g069470 | 43.750 | 160 | 89 | 1 | 169 | 328 | 13 | 171 | 5.40e-42 | 144 |
| MS.gene058831.t1 | MTR_2g027100 | 45.783 | 166 | 77 | 2 | 169 | 327 | 1 | 160 | 6.61e-41 | 140 |
| MS.gene058831.t1 | MTR_3g067585 | 43.125 | 160 | 90 | 1 | 169 | 328 | 1 | 159 | 1.31e-40 | 140 |
| MS.gene058831.t1 | MTR_2g011590 | 40.764 | 157 | 92 | 1 | 172 | 328 | 3 | 158 | 1.62e-39 | 137 |
| MS.gene058831.t1 | MTR_1g031650 | 44.304 | 158 | 86 | 2 | 172 | 328 | 5 | 161 | 3.71e-36 | 129 |
| MS.gene058831.t1 | MTR_4g084280 | 40.625 | 160 | 94 | 1 | 169 | 328 | 1 | 159 | 1.64e-34 | 124 |
| MS.gene058831.t1 | MTR_8g464390 | 39.597 | 149 | 74 | 4 | 17 | 159 | 16 | 154 | 8.43e-28 | 113 |
| MS.gene058831.t1 | MTR_2g080950 | 44.828 | 116 | 56 | 2 | 17 | 132 | 16 | 123 | 7.24e-27 | 110 |
| MS.gene058831.t1 | MTR_6g080710 | 35.323 | 201 | 97 | 5 | 20 | 219 | 19 | 187 | 2.89e-26 | 105 |
| MS.gene058831.t1 | MTR_1g031650 | 42.742 | 124 | 70 | 1 | 205 | 328 | 2 | 124 | 1.41e-23 | 94.7 |
| MS.gene058831.t1 | MTR_1g069000 | 46.739 | 92 | 47 | 2 | 14 | 104 | 1 | 91 | 3.77e-21 | 94.4 |
| MS.gene058831.t1 | MTR_7g099830 | 45.455 | 88 | 47 | 1 | 14 | 101 | 1 | 87 | 1.21e-20 | 92.4 |
| MS.gene058831.t1 | MTR_7g020860 | 41.538 | 130 | 51 | 5 | 29 | 134 | 514 | 642 | 1.92e-20 | 92.8 |
| MS.gene058831.t1 | MTR_8g100100 | 35.507 | 138 | 64 | 3 | 29 | 142 | 512 | 648 | 8.10e-19 | 87.8 |
| MS.gene058831.t1 | MTR_8g100100 | 35.507 | 138 | 64 | 3 | 29 | 142 | 506 | 642 | 8.38e-19 | 87.8 |
| MS.gene058831.t1 | MTR_7g020860 | 43.220 | 118 | 42 | 5 | 32 | 125 | 517 | 633 | 9.82e-19 | 87.4 |
| MS.gene058831.t1 | MTR_8g067080 | 41.772 | 79 | 45 | 1 | 20 | 98 | 13 | 90 | 3.55e-17 | 82.0 |
| MS.gene058831.t1 | MTR_8g067080 | 41.772 | 79 | 45 | 1 | 20 | 98 | 13 | 90 | 3.72e-17 | 82.0 |
| MS.gene058831.t1 | MTR_8g471110 | 41.772 | 79 | 45 | 1 | 20 | 98 | 13 | 90 | 3.72e-17 | 82.0 |
| MS.gene058831.t1 | MTR_4g074170 | 38.532 | 109 | 55 | 3 | 29 | 126 | 491 | 598 | 5.15e-17 | 82.4 |
| MS.gene058831.t1 | MTR_8g067090 | 38.614 | 101 | 57 | 4 | 20 | 119 | 13 | 109 | 6.05e-17 | 81.3 |
| MS.gene058831.t1 | MTR_8g471120 | 38.614 | 101 | 57 | 4 | 20 | 119 | 13 | 109 | 6.05e-17 | 81.3 |
| MS.gene058831.t1 | MTR_3g098680 | 40.777 | 103 | 54 | 3 | 29 | 125 | 509 | 610 | 3.40e-16 | 80.1 |
| MS.gene058831.t1 | MTR_8g464390 | 35.398 | 113 | 57 | 4 | 53 | 159 | 1 | 103 | 9.42e-13 | 68.9 |
| MS.gene058831.t1 | MTR_2g080950 | 41.250 | 80 | 39 | 2 | 53 | 132 | 1 | 72 | 8.21e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058831.t1 | AT4G21160 | 71.818 | 330 | 84 | 2 | 10 | 330 | 8 | 337 | 0.0 | 507 |
| MS.gene058831.t1 | AT4G21160 | 71.818 | 330 | 84 | 2 | 10 | 330 | 8 | 337 | 0.0 | 507 |
| MS.gene058831.t1 | AT4G21160 | 71.818 | 330 | 84 | 2 | 10 | 330 | 8 | 337 | 0.0 | 507 |
| MS.gene058831.t1 | AT4G21160 | 71.818 | 330 | 84 | 2 | 10 | 330 | 8 | 337 | 0.0 | 507 |
| MS.gene058831.t1 | AT4G05330 | 69.643 | 336 | 94 | 2 | 3 | 330 | 1 | 336 | 2.17e-178 | 497 |
| MS.gene058831.t1 | AT4G05330 | 69.643 | 336 | 94 | 2 | 3 | 330 | 1 | 336 | 2.17e-178 | 497 |
| MS.gene058831.t1 | AT4G05330 | 70.847 | 295 | 78 | 2 | 44 | 330 | 7 | 301 | 2.32e-157 | 442 |
| MS.gene058831.t1 | AT3G07940 | 47.774 | 337 | 151 | 2 | 17 | 328 | 47 | 383 | 1.57e-113 | 334 |
| MS.gene058831.t1 | AT3G07940 | 47.642 | 212 | 86 | 2 | 19 | 205 | 49 | 260 | 1.60e-63 | 202 |
| MS.gene058831.t1 | AT1G73580 | 43.558 | 163 | 91 | 1 | 166 | 328 | 1 | 162 | 1.02e-40 | 140 |
| MS.gene058831.t1 | AT5G37740 | 43.558 | 163 | 88 | 2 | 169 | 328 | 1 | 162 | 1.92e-40 | 140 |
| MS.gene058831.t1 | AT1G70790 | 46.753 | 154 | 81 | 1 | 173 | 325 | 6 | 159 | 2.82e-40 | 140 |
| MS.gene058831.t1 | AT1G70790 | 46.753 | 154 | 81 | 1 | 173 | 325 | 6 | 159 | 2.82e-40 | 140 |
| MS.gene058831.t1 | AT1G70790 | 46.753 | 154 | 81 | 1 | 173 | 325 | 6 | 159 | 2.82e-40 | 140 |
| MS.gene058831.t1 | AT3G17980 | 40.625 | 160 | 94 | 1 | 169 | 328 | 13 | 171 | 2.88e-39 | 137 |
| MS.gene058831.t1 | AT2G01540 | 42.208 | 154 | 88 | 1 | 173 | 325 | 6 | 159 | 2.18e-37 | 132 |
| MS.gene058831.t1 | AT1G70800 | 39.241 | 158 | 95 | 1 | 169 | 326 | 10 | 166 | 4.29e-37 | 131 |
| MS.gene058831.t1 | AT5G37740 | 41.040 | 173 | 88 | 3 | 169 | 328 | 1 | 172 | 4.42e-37 | 131 |
| MS.gene058831.t1 | AT1G70810 | 39.375 | 160 | 96 | 1 | 169 | 328 | 1 | 159 | 9.66e-37 | 130 |
| MS.gene058831.t1 | AT1G48590 | 39.375 | 160 | 96 | 1 | 169 | 328 | 6 | 164 | 6.07e-36 | 128 |
| MS.gene058831.t1 | AT1G48590 | 39.375 | 160 | 96 | 1 | 169 | 328 | 6 | 164 | 6.07e-36 | 128 |
| MS.gene058831.t1 | AT1G48590 | 39.375 | 160 | 96 | 1 | 169 | 328 | 37 | 195 | 7.61e-36 | 129 |
| MS.gene058831.t1 | AT1G66360 | 41.615 | 161 | 93 | 1 | 169 | 328 | 1 | 161 | 9.04e-36 | 128 |
| MS.gene058831.t1 | AT5G47710 | 40.606 | 165 | 85 | 2 | 169 | 326 | 1 | 159 | 1.14e-34 | 124 |
| MS.gene058831.t1 | AT5G47710 | 40.606 | 165 | 85 | 2 | 169 | 326 | 1 | 159 | 1.14e-34 | 124 |
| MS.gene058831.t1 | AT5G47710 | 40.606 | 165 | 85 | 2 | 169 | 326 | 1 | 159 | 1.14e-34 | 124 |
| MS.gene058831.t1 | AT5G47710 | 40.606 | 165 | 85 | 2 | 169 | 326 | 1 | 159 | 1.14e-34 | 124 |
| MS.gene058831.t1 | AT1G23140 | 35.000 | 160 | 103 | 1 | 169 | 328 | 1 | 159 | 2.42e-31 | 116 |
| MS.gene058831.t1 | AT3G17660 | 39.231 | 130 | 69 | 3 | 5 | 132 | 2 | 123 | 2.38e-29 | 111 |
| MS.gene058831.t1 | AT3G17660 | 39.231 | 130 | 69 | 3 | 5 | 132 | 2 | 123 | 8.18e-29 | 111 |
| MS.gene058831.t1 | AT3G17660 | 39.231 | 130 | 69 | 3 | 5 | 132 | 2 | 123 | 1.96e-28 | 110 |
| MS.gene058831.t1 | AT5G54310 | 38.406 | 138 | 75 | 3 | 5 | 140 | 2 | 131 | 4.93e-27 | 111 |
| MS.gene058831.t1 | AT1G70790 | 43.333 | 120 | 67 | 1 | 207 | 325 | 3 | 122 | 2.38e-25 | 99.8 |
| MS.gene058831.t1 | AT1G48590 | 31.250 | 160 | 77 | 2 | 169 | 328 | 37 | 163 | 5.84e-22 | 91.3 |
| MS.gene058831.t1 | AT3G17660 | 33.846 | 130 | 66 | 3 | 5 | 132 | 2 | 113 | 4.06e-20 | 87.8 |
| MS.gene058831.t1 | AT2G37550 | 44.318 | 88 | 48 | 1 | 14 | 101 | 1 | 87 | 1.45e-19 | 89.4 |
| MS.gene058831.t1 | AT2G37550 | 44.318 | 88 | 48 | 1 | 14 | 101 | 1 | 87 | 1.45e-19 | 89.4 |
| MS.gene058831.t1 | AT3G53710 | 43.182 | 88 | 49 | 1 | 14 | 101 | 1 | 87 | 1.65e-19 | 89.4 |
| MS.gene058831.t1 | AT3G53710 | 43.182 | 88 | 49 | 1 | 14 | 101 | 1 | 87 | 1.65e-19 | 89.4 |
| MS.gene058831.t1 | AT3G53710 | 43.182 | 88 | 49 | 1 | 14 | 101 | 1 | 87 | 1.65e-19 | 89.4 |
| MS.gene058831.t1 | AT2G35210 | 40.594 | 101 | 55 | 3 | 20 | 119 | 13 | 109 | 6.86e-19 | 86.7 |
| MS.gene058831.t1 | AT2G35210 | 40.594 | 101 | 55 | 3 | 20 | 119 | 13 | 109 | 1.16e-18 | 86.3 |
| MS.gene058831.t1 | AT5G13300 | 37.500 | 128 | 58 | 4 | 29 | 135 | 513 | 639 | 1.32e-18 | 87.4 |
| MS.gene058831.t1 | AT1G60860 | 35.570 | 149 | 76 | 5 | 29 | 158 | 308 | 455 | 2.30e-18 | 86.3 |
| MS.gene058831.t1 | AT1G60860 | 35.570 | 149 | 76 | 5 | 29 | 158 | 368 | 515 | 2.98e-18 | 85.9 |
| MS.gene058831.t1 | AT1G60860 | 35.570 | 149 | 76 | 5 | 29 | 158 | 479 | 626 | 3.32e-18 | 85.9 |
| MS.gene058831.t1 | AT1G10870 | 29.231 | 195 | 110 | 7 | 29 | 208 | 479 | 660 | 6.83e-18 | 85.1 |
| MS.gene058831.t1 | AT1G10870 | 30.000 | 200 | 107 | 8 | 29 | 208 | 479 | 665 | 1.21e-17 | 84.3 |
| MS.gene058831.t1 | AT5G46750 | 43.750 | 80 | 44 | 1 | 20 | 99 | 13 | 91 | 2.68e-17 | 82.4 |
| MS.gene058831.t1 | AT5G61980 | 46.053 | 76 | 38 | 2 | 29 | 102 | 510 | 584 | 8.23e-17 | 82.0 |
| MS.gene058831.t1 | AT4G17890 | 40.777 | 103 | 53 | 4 | 18 | 119 | 17 | 112 | 9.10e-17 | 80.9 |
| MS.gene058831.t1 | AT4G17890 | 39.604 | 101 | 56 | 3 | 20 | 119 | 16 | 112 | 1.25e-16 | 80.5 |
| MS.gene058831.t1 | AT3G17660 | 37.500 | 80 | 42 | 2 | 53 | 132 | 1 | 72 | 1.65e-12 | 65.9 |
Find 62 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATAGACGGTTGGAATT+TGG | 0.165631 | 4.3:-12883750 | MS.gene058831:CDS |
| GCCATTGCAGAATTTATTAA+AGG | 0.185985 | 4.3:+12880224 | None:intergenic |
| TGTAACCTTACCAAACTTAT+TGG | 0.212227 | 4.3:+12880581 | None:intergenic |
| AAGAAGATTGAAGGATTTAT+TGG | 0.242961 | 4.3:-12883203 | MS.gene058831:CDS |
| GAAGGAATGGTAGAATTTAT+TGG | 0.252239 | 4.3:-12881351 | MS.gene058831:CDS |
| ATTCTCCACATTCGACATTC+TGG | 0.255352 | 4.3:+12880069 | None:intergenic |
| GAATAAACTTACGCCCATTT+AGG | 0.255700 | 4.3:+12883136 | None:intergenic |
| GTAGTGCTCCGGATCCTAAA+TGG | 0.293236 | 4.3:-12883150 | MS.gene058831:CDS |
| TTGTCCGTTCCTCAGCAATT+TGG | 0.300614 | 4.3:-12880605 | MS.gene058831:CDS |
| GCAATGGCATTTGGAGATAC+TGG | 0.302939 | 4.3:-12880209 | MS.gene058831:CDS |
| GTTCTCGGCTGATGATATAA+TGG | 0.310794 | 4.3:-12880270 | MS.gene058831:CDS |
| ATAAATTCTGCAATGGCATT+TGG | 0.314753 | 4.3:-12880218 | MS.gene058831:CDS |
| ACAATAGACGGTTGGAATTT+GGG | 0.317344 | 4.3:-12883749 | MS.gene058831:CDS |
| ATCTAGTGGTTCAAAGAATA+TGG | 0.320374 | 4.3:-12881527 | MS.gene058831:intron |
| TTCTTCAGGTCAGCAAATAT+TGG | 0.330231 | 4.3:-12882927 | MS.gene058831:intron |
| GGAGTAATTTGAATCCAGTT+TGG | 0.344163 | 4.3:-12880643 | MS.gene058831:CDS |
| GCAATTTGGACCAATAAGTT+TGG | 0.353128 | 4.3:-12880591 | MS.gene058831:intron |
| ATGATATGCGTATAGGAAAA+TGG | 0.354086 | 4.3:-12880178 | MS.gene058831:CDS |
| TCATGACTGGCGTCTGGTCC+TGG | 0.366903 | 4.3:+12881976 | None:intergenic |
| GTGGATGTCTCTTGATCATT+AGG | 0.379350 | 4.3:-12880030 | None:intergenic |
| ATCTGCCAATTCAATTTATG+AGG | 0.388056 | 4.3:-12882025 | MS.gene058831:CDS |
| ATAAGTTCCTCGTTCCAAAC+TGG | 0.391227 | 4.3:+12880629 | None:intergenic |
| AAAAGCCTCATAAATTGAAT+TGG | 0.395677 | 4.3:+12882020 | None:intergenic |
| CCAAGCTTCAAAACAACATA+TGG | 0.397782 | 4.3:+12881264 | None:intergenic |
| CTGTTCAGACGACTGTAATA+AGG | 0.399690 | 4.3:-12880664 | MS.gene058831:CDS |
| TTGTATGCTTAAAATGTTGT+GGG | 0.417828 | 4.3:-12882899 | MS.gene058831:CDS |
| ATTTGATCATGACTTGTTCT+CGG | 0.424924 | 4.3:-12880285 | MS.gene058831:CDS |
| TACAGGTAAAAGAAGATTGA+AGG | 0.424972 | 4.3:-12883212 | MS.gene058831:intron |
| TTCTCGGCTGATGATATAAT+GGG | 0.430169 | 4.3:-12880269 | MS.gene058831:CDS |
| AGCATAGTCAATATCATTGA+TGG | 0.443930 | 4.3:-12880122 | MS.gene058831:CDS |
| TGTCTGTAACATTGGATGAA+TGG | 0.468188 | 4.3:-12882092 | MS.gene058831:CDS |
| CGTTCTTCATGACTGGCGTC+TGG | 0.471968 | 4.3:+12881970 | None:intergenic |
| AGTCAATATCATTGATGGTA+AGG | 0.482666 | 4.3:-12880117 | MS.gene058831:CDS |
| TAATGACAATGCGCTTATAG+AGG | 0.485544 | 4.3:-12880147 | MS.gene058831:CDS |
| AAACATAACATACTTGATAC+AGG | 0.485779 | 4.3:+12883723 | None:intergenic |
| ATAGATGCAATGATGGAAGT+TGG | 0.488889 | 4.3:-12882057 | MS.gene058831:CDS |
| ATGTTTGATGATATGCGTAT+AGG | 0.495087 | 4.3:-12880185 | MS.gene058831:CDS |
| TTGTGCTGATTGTAGTGCTC+CGG | 0.495186 | 4.3:-12883161 | MS.gene058831:CDS |
| AAGAACGTGCAAAATTCATC+AGG | 0.500258 | 4.3:-12881954 | MS.gene058831:intron |
| TAGTGCTCCGGATCCTAAAT+GGG | 0.500733 | 4.3:-12883149 | MS.gene058831:CDS |
| ACCTTTAATAAATTCTGCAA+TGG | 0.502560 | 4.3:-12880225 | MS.gene058831:CDS |
| ACTTACGCCCATTTAGGATC+CGG | 0.503153 | 4.3:+12883142 | None:intergenic |
| TGATGAAATAGATGCAATGA+TGG | 0.538280 | 4.3:-12882064 | MS.gene058831:CDS |
| AATTAAACTTAGAACTTGAG+TGG | 0.550387 | 4.3:-12880049 | MS.gene058831:CDS |
| GTCGATGAACAATAGACGGT+TGG | 0.555087 | 4.3:-12883757 | MS.gene058831:CDS |
| TTTGTATGCTTAAAATGTTG+TGG | 0.556153 | 4.3:-12882900 | MS.gene058831:CDS |
| TGTGGGGTGCACAGAAGTCT+TGG | 0.558109 | 4.3:-12882882 | MS.gene058831:CDS |
| ATTTAGCAATCAGAGATATG+AGG | 0.559392 | 4.3:-12881296 | MS.gene058831:CDS |
| CCGGAAGGATATACAAAACC+AGG | 0.574677 | 4.3:-12881994 | MS.gene058831:CDS |
| ATGGTGAAAATAGGAAGGAA+TGG | 0.575850 | 4.3:-12881364 | MS.gene058831:intron |
| TGGTCCAAATTGCTGAGGAA+CGG | 0.581432 | 4.3:+12880601 | None:intergenic |
| GATAGCTTTCGAAAATCTAG+TGG | 0.590041 | 4.3:-12881541 | MS.gene058831:CDS |
| GATGCAATGATGGAAGTTGG+AGG | 0.591464 | 4.3:-12882054 | MS.gene058831:CDS |
| TGGAATGCTGAAAGTGAAAG+TGG | 0.593242 | 4.3:-12881331 | MS.gene058831:CDS |
| CTGAAAGTGAAAGTGGTCAA+AGG | 0.594303 | 4.3:-12881324 | MS.gene058831:CDS |
| GGATGTCGATGAACAATAGA+CGG | 0.602168 | 4.3:-12883761 | MS.gene058831:CDS |
| TCTTGGCACTCATATATCAA+AGG | 0.604306 | 4.3:-12882865 | MS.gene058831:intron |
| CTTATTGGTCCAAATTGCTG+AGG | 0.607175 | 4.3:+12880596 | None:intergenic |
| TGTATGCTTAAAATGTTGTG+GGG | 0.631760 | 4.3:-12882898 | MS.gene058831:CDS |
| AAGCTCCAGAATGTCGAATG+TGG | 0.636564 | 4.3:-12880074 | MS.gene058831:CDS |
| TTTGAATCCAGTTTGGAACG+AGG | 0.647447 | 4.3:-12880636 | MS.gene058831:CDS |
| ATAGACGGTTGGAATTTGGG+AGG | 0.688403 | 4.3:-12883746 | MS.gene058831:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATAAAAGTACATATTA+AGG | + | chr4.3:12882928-12882947 | None:intergenic | 10.0% |
| !! | ATTAAAATTTCACACTTAAA+TGG | + | chr4.3:12882115-12882134 | None:intergenic | 15.0% |
| !! | GATATAATCCATTAAAATTT+AGG | + | chr4.3:12880225-12880244 | None:intergenic | 15.0% |
| !! | TGAAATAATTGAAAAACTAA+CGG | - | chr4.3:12881026-12881045 | MS.gene058831:intron | 15.0% |
| !!! | ATGTATTGTTTTAGATATAT+TGG | + | chr4.3:12883358-12883377 | None:intergenic | 15.0% |
| !!! | TATAATATGTATGTTTTTCA+AGG | - | chr4.3:12880330-12880349 | MS.gene058831:intron | 15.0% |
| !!! | TATTAATCATTTTTACAAGT+GGG | + | chr4.3:12882807-12882826 | None:intergenic | 15.0% |
| !!! | TTTATTACTTTTTTAAACGT+GGG | + | chr4.3:12882727-12882746 | None:intergenic | 15.0% |
| !!! | TTTTATTACTTTTTTAAACG+TGG | + | chr4.3:12882728-12882747 | None:intergenic | 15.0% |
| !! | AAAAATATATTACTACCGTA+TGG | - | chr4.3:12881226-12881245 | MS.gene058831:intron | 20.0% |
| !! | AAACTACATAAATTGTTTAC+AGG | + | chr4.3:12883294-12883313 | None:intergenic | 20.0% |
| !! | CAAATTACATGTTTAAAAAC+AGG | - | chr4.3:12880442-12880461 | MS.gene058831:intron | 20.0% |
| !! | GAAATAATTGAAAAACTAAC+GGG | - | chr4.3:12881027-12881046 | MS.gene058831:intron | 20.0% |
| !! | GTTTAATATGTAAAGATAGT+GGG | - | chr4.3:12882841-12882860 | MS.gene058831:intron | 20.0% |
| !! | TAAAAAAATTAGTAGGACAA+TGG | + | chr4.3:12881440-12881459 | None:intergenic | 20.0% |
| !! | TGAATGATATTGAATATTGA+TGG | - | chr4.3:12882407-12882426 | MS.gene058831:intron | 20.0% |
| !! | TGTTTAATATGTAAAGATAG+TGG | - | chr4.3:12882840-12882859 | MS.gene058831:intron | 20.0% |
| !! | TTTCAATTATTTCAAGACAA+GGG | + | chr4.3:12881020-12881039 | None:intergenic | 20.0% |
| !!! | AAGGATGTTCTTTTATATTT+GGG | - | chr4.3:12881190-12881209 | MS.gene058831:intron | 20.0% |
| !!! | CATATTTAAGTACTTTTCAT+TGG | - | chr4.3:12882865-12882884 | MS.gene058831:intron | 20.0% |
| !!! | CTATTAATCATTTTTACAAG+TGG | + | chr4.3:12882808-12882827 | None:intergenic | 20.0% |
| !!! | CTTTCTTTTTAAATTGACAA+TGG | - | chr4.3:12883087-12883106 | MS.gene058831:intron | 20.0% |
| !!! | TAATTTAAAAAAGAGTGTGT+TGG | + | chr4.3:12880188-12880207 | None:intergenic | 20.0% |
| !!! | TTTTCAATTATTTCAAGACA+AGG | + | chr4.3:12881021-12881040 | None:intergenic | 20.0% |
| ! | AAAAGCCTCATAAATTGAAT+TGG | + | chr4.3:12881773-12881792 | None:intergenic | 25.0% |
| ! | AAACATAACATACTTGATAC+AGG | + | chr4.3:12880070-12880089 | None:intergenic | 25.0% |
| ! | AAGAAGATTGAAGGATTTAT+TGG | - | chr4.3:12880587-12880606 | MS.gene058831:intron | 25.0% |
| ! | AAGGAAAAACTAAACCAAAA+TGG | + | chr4.3:12880531-12880550 | None:intergenic | 25.0% |
| ! | AAGTTTCTCCAAAAAGATTA+TGG | - | chr4.3:12882227-12882246 | MS.gene058831:intron | 25.0% |
| ! | AATAAACAAAAAAGGTTGTG+TGG | + | chr4.3:12880686-12880705 | None:intergenic | 25.0% |
| ! | AATATGAGAAGAGCAAAATT+TGG | + | chr4.3:12881955-12881974 | None:intergenic | 25.0% |
| ! | AATCCATTAAAATTTAGGAG+CGG | + | chr4.3:12880220-12880239 | None:intergenic | 25.0% |
| ! | AATTAAACTTAGAACTTGAG+TGG | - | chr4.3:12883741-12883760 | MS.gene058831:CDS | 25.0% |
| ! | ACACAAATACATTCAATCAA+AGG | + | chr4.3:12882304-12882323 | None:intergenic | 25.0% |
| ! | ACCTTTAATAAATTCTGCAA+TGG | - | chr4.3:12883565-12883584 | MS.gene058831:intron | 25.0% |
| ! | ATACATACAAATGTGTATGT+GGG | - | chr4.3:12881065-12881084 | MS.gene058831:intron | 25.0% |
| ! | ATATGAGAAGAGCAAAATTT+GGG | + | chr4.3:12881954-12881973 | None:intergenic | 25.0% |
| ! | ATATTGACATTTATGATTGC+AGG | - | chr4.3:12882133-12882152 | MS.gene058831:intron | 25.0% |
| ! | GTAATAAAATGTGTACTACT+TGG | - | chr4.3:12882739-12882758 | MS.gene058831:intron | 25.0% |
| ! | TATTACTCATTTATGCAAGT+GGG | + | chr4.3:12882766-12882785 | None:intergenic | 25.0% |
| ! | TTATTACTCATTTATGCAAG+TGG | + | chr4.3:12882767-12882786 | None:intergenic | 25.0% |
| ! | TTCATATACAAGACATTGTA+AGG | + | chr4.3:12883439-12883458 | None:intergenic | 25.0% |
| ! | TTCTTACTATGAATAGATTG+AGG | - | chr4.3:12881503-12881522 | MS.gene058831:intron | 25.0% |
| ! | TTGTATGCTTAAAATGTTGT+GGG | - | chr4.3:12880891-12880910 | MS.gene058831:intron | 25.0% |
| ! | TTTGTATGCTTAAAATGTTG+TGG | - | chr4.3:12880890-12880909 | MS.gene058831:intron | 25.0% |
| !! | AAAGCTATCCATAATCTTTT+TGG | + | chr4.3:12882238-12882257 | None:intergenic | 25.0% |
| !! | AATTTATGAGGCTTTTATTC+CGG | - | chr4.3:12881777-12881796 | MS.gene058831:intron | 25.0% |
| !! | GAAGGATGTTCTTTTATATT+TGG | - | chr4.3:12881189-12881208 | MS.gene058831:intron | 25.0% |
| !! | GTTTTCATGAGTGATTTTAA+TGG | - | chr4.3:12882379-12882398 | MS.gene058831:intron | 25.0% |
| !!! | ACCTTTTTTGTTTATTGTCA+TGG | - | chr4.3:12880690-12880709 | MS.gene058831:intron | 25.0% |
| !!! | ATTGCACTTTGAAATTCAAA+AGG | - | chr4.3:12881478-12881497 | MS.gene058831:intron | 25.0% |
| !!! | GTCCTACTAATTTTTTTAGA+CGG | - | chr4.3:12881442-12881461 | MS.gene058831:intron | 25.0% |
| !!! | TACAAATTGTGTTGGTTATA+TGG | - | chr4.3:12880373-12880392 | MS.gene058831:intron | 25.0% |
| !!! | TCCTACTAATTTTTTTAGAC+GGG | - | chr4.3:12881443-12881462 | MS.gene058831:intron | 25.0% |
| !!! | TGAATATTGATGGTGAAAAT+AGG | - | chr4.3:12882417-12882436 | MS.gene058831:intron | 25.0% |
| AACAACCAACCATTCTTATA+TGG | - | chr4.3:12881146-12881165 | MS.gene058831:intron | 30.0% | |
| AACGATTTAAGGAAAAGTAG+TGG | - | chr4.3:12880469-12880488 | MS.gene058831:intron | 30.0% | |
| AAGGAACGATCAACTATATA+AGG | - | chr4.3:12882673-12882692 | MS.gene058831:intron | 30.0% | |
| ACAAAATCTGACAAGGAAAA+AGG | + | chr4.3:12881681-12881700 | None:intergenic | 30.0% | |
| AGCATAGTCAATATCATTGA+TGG | - | chr4.3:12883668-12883687 | MS.gene058831:intron | 30.0% | |
| AGTGCTAAACTTAATGATCT+AGG | - | chr4.3:12881328-12881347 | MS.gene058831:CDS | 30.0% | |
| ATAAATTCTGCAATGGCATT+TGG | - | chr4.3:12883572-12883591 | MS.gene058831:intron | 30.0% | |
| ATCTAGTGGTTCAAAGAATA+TGG | - | chr4.3:12882263-12882282 | MS.gene058831:intron | 30.0% | |
| ATCTGCCAATTCAATTTATG+AGG | - | chr4.3:12881765-12881784 | MS.gene058831:intron | 30.0% | |
| ATGATATGCGTATAGGAAAA+TGG | - | chr4.3:12883612-12883631 | MS.gene058831:intron | 30.0% | |
| ATTTAGCAATCAGAGATATG+AGG | - | chr4.3:12882494-12882513 | MS.gene058831:intron | 30.0% | |
| CAGTATGCTAATTCAACTTA+TGG | + | chr4.3:12882330-12882349 | None:intergenic | 30.0% | |
| CATACATACAAATGTGTATG+TGG | - | chr4.3:12881064-12881083 | MS.gene058831:intron | 30.0% | |
| GAAGGAATGGTAGAATTTAT+TGG | - | chr4.3:12882439-12882458 | MS.gene058831:intron | 30.0% | |
| GAGGATAAATTAGTAGTATG+TGG | + | chr4.3:12881396-12881415 | None:intergenic | 30.0% | |
| GCCATGACAATAAACAAAAA+AGG | + | chr4.3:12880694-12880713 | None:intergenic | 30.0% | |
| GCCATTGCAGAATTTATTAA+AGG | + | chr4.3:12883569-12883588 | None:intergenic | 30.0% | |
| GTGCTAAACTTAATGATCTA+GGG | - | chr4.3:12881329-12881348 | MS.gene058831:CDS | 30.0% | |
| TAATAATAGTCCATTGTGCT+TGG | - | chr4.3:12882011-12882030 | MS.gene058831:CDS | 30.0% | |
| TAATTTATCCTCCATTCCAT+TGG | - | chr4.3:12881404-12881423 | MS.gene058831:intron | 30.0% | |
| TACAAATGTGACAGATTTCT+TGG | + | chr4.3:12880797-12880816 | None:intergenic | 30.0% | |
| TACAGGTAAAAGAAGATTGA+AGG | - | chr4.3:12880578-12880597 | MS.gene058831:intron | 30.0% | |
| TATAGTTGATCGTTCCTTAA+CGG | + | chr4.3:12882671-12882690 | None:intergenic | 30.0% | |
| TCCCGTCTAAAAAAATTAGT+AGG | + | chr4.3:12881447-12881466 | None:intergenic | 30.0% | |
| TCTATACATGAATAGAATCG+AGG | - | chr4.3:12881622-12881641 | MS.gene058831:CDS | 30.0% | |
| TGATGAAATAGATGCAATGA+TGG | - | chr4.3:12881726-12881745 | MS.gene058831:intron | 30.0% | |
| TGTAACCTTACCAAACTTAT+TGG | + | chr4.3:12883212-12883231 | None:intergenic | 30.0% | |
| TGTATGCTTAAAATGTTGTG+GGG | - | chr4.3:12880892-12880911 | MS.gene058831:intron | 30.0% | |
| TGTTGATGTACAAATTGTGT+TGG | - | chr4.3:12880365-12880384 | MS.gene058831:intron | 30.0% | |
| ! | AAATGGAACGTTGATTGAAT+TGG | + | chr4.3:12882098-12882117 | None:intergenic | 30.0% |
| ! | ACTTTTTGTCACTGAAAAGT+AGG | - | chr4.3:12881895-12881914 | MS.gene058831:intron | 30.0% |
| ! | AGTCAATATCATTGATGGTA+AGG | - | chr4.3:12883673-12883692 | MS.gene058831:intron | 30.0% |
| ! | ATGTTTGATGATATGCGTAT+AGG | - | chr4.3:12883605-12883624 | MS.gene058831:intron | 30.0% |
| ! | GGAACTAGATTTTGCATTAT+AGG | + | chr4.3:12883273-12883292 | None:intergenic | 30.0% |
| ! | GTTGGTTATATGGTTTGTAT+CGG | - | chr4.3:12880383-12880402 | MS.gene058831:intron | 30.0% |
| ! | TATCCGCTCCTAAATTTTAA+TGG | - | chr4.3:12880214-12880233 | MS.gene058831:CDS | 30.0% |
| ! | TCAGATTTTGTCTGTAACAT+TGG | - | chr4.3:12881690-12881709 | MS.gene058831:intron | 30.0% |
| ! | TTAATGATCTAGGGTATAAG+AGG | - | chr4.3:12881338-12881357 | MS.gene058831:CDS | 30.0% |
| ! | TTTAAAAAAGAGTGTGTTGG+TGG | + | chr4.3:12880185-12880204 | None:intergenic | 30.0% |
| !! | ACAAATGTCTTTGAAGTACT+TGG | - | chr4.3:12880269-12880288 | MS.gene058831:CDS | 30.0% |
| !! | ATTTGATCATGACTTGTTCT+CGG | - | chr4.3:12883505-12883524 | MS.gene058831:intron | 30.0% |
| !! | GTATCGGTTAAAATCTTTGT+CGG | - | chr4.3:12880399-12880418 | MS.gene058831:intron | 30.0% |
| !! | TATTGATGGTGAAAATAGGA+AGG | - | chr4.3:12882421-12882440 | MS.gene058831:intron | 30.0% |
| !!! | GTCGGAAATAATTTTTTCGA+AGG | - | chr4.3:12880417-12880436 | MS.gene058831:intron | 30.0% |
| !!! | TTTTTTTGAACTGCTTCTTC+AGG | - | chr4.3:12880849-12880868 | MS.gene058831:intron | 30.0% |
| AAACAGGCATGAACGATTTA+AGG | - | chr4.3:12880458-12880477 | MS.gene058831:intron | 35.0% | |
| AACAATAGACGGTTGGAATT+TGG | - | chr4.3:12880040-12880059 | MS.gene058831:CDS | 35.0% | |
| AACATGCTTCATTGTATTGC+AGG | - | chr4.3:12883478-12883497 | MS.gene058831:intron | 35.0% | |
| AAGAACGTGCAAAATTCATC+AGG | - | chr4.3:12881836-12881855 | MS.gene058831:intron | 35.0% | |
| ACAATAGACGGTTGGAATTT+GGG | - | chr4.3:12880041-12880060 | MS.gene058831:CDS | 35.0% | |
| ACCAATCATTCAACTTCTCA+AGG | + | chr4.3:12880550-12880569 | None:intergenic | 35.0% | |
| ATAGTTGATCGTTCCTTAAC+GGG | + | chr4.3:12882670-12882689 | None:intergenic | 35.0% | |
| ATGCTTGTGCAATAGTTTGA+AGG | - | chr4.3:12881171-12881190 | MS.gene058831:intron | 35.0% | |
| ATGGTGAAAATAGGAAGGAA+TGG | - | chr4.3:12882426-12882445 | MS.gene058831:intron | 35.0% | |
| ATTGAAAACAACCAACCTGT+TGG | + | chr4.3:12882552-12882571 | None:intergenic | 35.0% | |
| CAAGCATAGCCATATAAGAA+TGG | + | chr4.3:12881158-12881177 | None:intergenic | 35.0% | |
| CAATGGTTAGTGATTACCAA+TGG | + | chr4.3:12881423-12881442 | None:intergenic | 35.0% | |
| CATAGCCATATAAGAATGGT+TGG | + | chr4.3:12881154-12881173 | None:intergenic | 35.0% | |
| CATTTAAGGAGTCCTTGTTA+GGG | - | chr4.3:12882982-12883001 | MS.gene058831:intron | 35.0% | |
| CCAAGCTTCAAAACAACATA+TGG | + | chr4.3:12882529-12882548 | None:intergenic | 35.0% | |
| CCAATGGCAATACACTAATA+AGG | + | chr4.3:12882894-12882913 | None:intergenic | 35.0% | |
| CCTTATTAGTGTATTGCCAT+TGG | - | chr4.3:12882891-12882910 | MS.gene058831:CDS | 35.0% | |
| GAAAAAATGAGTTCCCGTTA+AGG | - | chr4.3:12882654-12882673 | MS.gene058831:intron | 35.0% | |
| GAATAAACTTACGCCCATTT+AGG | + | chr4.3:12880657-12880676 | None:intergenic | 35.0% | |
| GATAGCTTTCGAAAATCTAG+TGG | - | chr4.3:12882249-12882268 | MS.gene058831:intron | 35.0% | |
| GCAATTTGGACCAATAAGTT+TGG | - | chr4.3:12883199-12883218 | MS.gene058831:CDS | 35.0% | |
| GGAGTAATTTGAATCCAGTT+TGG | - | chr4.3:12883147-12883166 | MS.gene058831:intron | 35.0% | |
| GTTACAGACAAAATCTGACA+AGG | + | chr4.3:12881688-12881707 | None:intergenic | 35.0% | |
| GTTAGATCGATGGATAAGAT+AGG | - | chr4.3:12881543-12881562 | MS.gene058831:CDS | 35.0% | |
| GTTAGTGATTACCAATGGAA+TGG | + | chr4.3:12881418-12881437 | None:intergenic | 35.0% | |
| GTTCATGGTAGCATAAAAAG+TGG | - | chr4.3:12882070-12882089 | MS.gene058831:CDS | 35.0% | |
| TAATGACAATGCGCTTATAG+AGG | - | chr4.3:12883643-12883662 | MS.gene058831:intron | 35.0% | |
| TAGGTAGAATGTAAGACAAG+AGG | - | chr4.3:12881562-12881581 | MS.gene058831:CDS | 35.0% | |
| TCCTTGAGAAGTTGAATGAT+TGG | - | chr4.3:12880546-12880565 | MS.gene058831:intron | 35.0% | |
| TCTTGGCACTCATATATCAA+AGG | - | chr4.3:12880925-12880944 | MS.gene058831:intron | 35.0% | |
| TGAGAAGTTGAATGATTGGT+AGG | - | chr4.3:12880550-12880569 | MS.gene058831:intron | 35.0% | |
| TGTAAGTTGTGTTAGATCGA+TGG | - | chr4.3:12881533-12881552 | MS.gene058831:CDS | 35.0% | |
| TGTCTGTAACATTGGATGAA+TGG | - | chr4.3:12881698-12881717 | MS.gene058831:intron | 35.0% | |
| TTAGAGCAACATTACGTATG+AGG | - | chr4.3:12883393-12883412 | MS.gene058831:intron | 35.0% | |
| TTCTCGGCTGATGATATAAT+GGG | - | chr4.3:12883521-12883540 | MS.gene058831:intron | 35.0% | |
| TTCTTCAGGTCAGCAAATAT+TGG | - | chr4.3:12880863-12880882 | MS.gene058831:intron | 35.0% | |
| TTGGACCAATAAGTTTGGTA+AGG | - | chr4.3:12883204-12883223 | MS.gene058831:CDS | 35.0% | |
| ! | ACTATTAGAGCATCTCCAAT+GGG | - | chr4.3:12882579-12882598 | MS.gene058831:intron | 35.0% |
| ! | ATAGATGCAATGATGGAAGT+TGG | - | chr4.3:12881733-12881752 | MS.gene058831:intron | 35.0% |
| ! | ATGATTGGTAGGTCTTTTAC+AGG | - | chr4.3:12880561-12880580 | MS.gene058831:intron | 35.0% |
| ! | TACTATTAGAGCATCTCCAA+TGG | - | chr4.3:12882578-12882597 | MS.gene058831:intron | 35.0% |
| ! | TGTGACATGAAAAGCCATTT+TGG | - | chr4.3:12880514-12880533 | MS.gene058831:intron | 35.0% |
| !! | TCATGGCCTTTCTAAAACTA+AGG | - | chr4.3:12880707-12880726 | MS.gene058831:intron | 35.0% |
| !!! | ATTTTTTCTTCCTCCAATGG+AGG | + | chr4.3:12882642-12882661 | None:intergenic | 35.0% |
| !!! | CCATATGTTGTTTTGAAGCT+TGG | - | chr4.3:12882526-12882545 | MS.gene058831:intron | 35.0% |
| !!! | CTCAGACCTTAGTTTTAGAA+AGG | + | chr4.3:12880716-12880735 | None:intergenic | 35.0% |
| !!! | CTCATTTTTTCTTCCTCCAA+TGG | + | chr4.3:12882645-12882664 | None:intergenic | 35.0% |
| !!! | TTTTTTCTTCCTCCAATGGA+GGG | + | chr4.3:12882641-12882660 | None:intergenic | 35.0% |
| AATAAGTGATGTGTCACCGT+AGG | - | chr4.3:12882956-12882975 | MS.gene058831:intron | 40.0% | |
| ACAATGGTAGTTCCCTAACA+AGG | + | chr4.3:12882997-12883016 | None:intergenic | 40.0% | |
| AGTGATTACCAATGGAATGG+AGG | + | chr4.3:12881415-12881434 | None:intergenic | 40.0% | |
| ATAAGTGATGTGTCACCGTA+GGG | - | chr4.3:12882957-12882976 | MS.gene058831:intron | 40.0% | |
| ATAAGTTCCTCGTTCCAAAC+TGG | + | chr4.3:12883164-12883183 | None:intergenic | 40.0% | |
| ATGCTTCATTGTATTGCAGG+AGG | - | chr4.3:12883481-12883500 | MS.gene058831:intron | 40.0% | |
| ATTCTCCACATTCGACATTC+TGG | + | chr4.3:12883724-12883743 | None:intergenic | 40.0% | |
| CAATGCTTAACCAAGCACAA+TGG | + | chr4.3:12882024-12882043 | None:intergenic | 40.0% | |
| CATACAAATGTGTATGTGGG+TGG | - | chr4.3:12881068-12881087 | MS.gene058831:intron | 40.0% | |
| CCATTTAAGGAGTCCTTGTT+AGG | - | chr4.3:12882981-12883000 | MS.gene058831:intron | 40.0% | |
| CCTAACAAGGACTCCTTAAA+TGG | + | chr4.3:12882984-12883003 | None:intergenic | 40.0% | |
| CTGAAAGTGAAAGTGGTCAA+AGG | - | chr4.3:12882466-12882485 | MS.gene058831:intron | 40.0% | |
| CTGTTCAGACGACTGTAATA+AGG | - | chr4.3:12883126-12883145 | MS.gene058831:intron | 40.0% | |
| CTTATTGGTCCAAATTGCTG+AGG | + | chr4.3:12883197-12883216 | None:intergenic | 40.0% | |
| GCTGAAGACAAAGATTCATC+TGG | + | chr4.3:12881932-12881951 | None:intergenic | 40.0% | |
| GTTCTCGGCTGATGATATAA+TGG | - | chr4.3:12883520-12883539 | MS.gene058831:intron | 40.0% | |
| TGGAATGCTGAAAGTGAAAG+TGG | - | chr4.3:12882459-12882478 | MS.gene058831:intron | 40.0% | |
| TTGTTAGGGAACTACCATTG+TGG | - | chr4.3:12882996-12883015 | MS.gene058831:intron | 40.0% | |
| ! | ATGATCTAGGGTATAAGAGG+TGG | - | chr4.3:12881341-12881360 | MS.gene058831:CDS | 40.0% |
| ! | ATGGCTTTTCATGTCACAAG+TGG | + | chr4.3:12880512-12880531 | None:intergenic | 40.0% |
| ! | CTATTAGAGCATCTCCAATG+GGG | - | chr4.3:12882580-12882599 | MS.gene058831:intron | 40.0% |
| ! | TATGAGGCTTTTATTCCGGA+AGG | - | chr4.3:12881781-12881800 | MS.gene058831:intron | 40.0% |
| ! | TATTAGAGCATCTCCAATGG+GGG | - | chr4.3:12882581-12882600 | MS.gene058831:intron | 40.0% |
| ! | TTTGAATCCAGTTTGGAACG+AGG | - | chr4.3:12883154-12883173 | MS.gene058831:CDS | 40.0% |
| ! | TTTTGCACGTTCTTCATGAC+TGG | + | chr4.3:12881830-12881849 | None:intergenic | 40.0% |
| !! | TGTAAGACAAGAGGAGTGTT+AGG | - | chr4.3:12881571-12881590 | MS.gene058831:CDS | 40.0% |
| !! | TTTCCTAAGAGCATCCACAA+TGG | + | chr4.3:12883013-12883032 | None:intergenic | 40.0% |
| !!! | CCTGGTTTTGTATATCCTTC+CGG | + | chr4.3:12881799-12881818 | None:intergenic | 40.0% |
| AAGCTCCAGAATGTCGAATG+TGG | - | chr4.3:12883716-12883735 | MS.gene058831:intron | 45.0% | |
| ATAGACGGTTGGAATTTGGG+AGG | - | chr4.3:12880044-12880063 | MS.gene058831:CDS | 45.0% | |
| ATATAAGGACCTCTCTCTCC+TGG | - | chr4.3:12882688-12882707 | MS.gene058831:intron | 45.0% | |
| CCGCAATCATGTATGCCATA+CGG | + | chr4.3:12881244-12881263 | None:intergenic | 45.0% | |
| CCGGAAGGATATACAAAACC+AGG | - | chr4.3:12881796-12881815 | MS.gene058831:intron | 45.0% | |
| CCGTATGGCATACATGATTG+CGG | - | chr4.3:12881241-12881260 | MS.gene058831:intron | 45.0% | |
| CGACATTGCGATGTTGTTCA+TGG | - | chr4.3:12882055-12882074 | MS.gene058831:CDS | 45.0% | |
| CTACCATTGTGGATGCTCTT+AGG | - | chr4.3:12883007-12883026 | MS.gene058831:intron | 45.0% | |
| GACTCCTTAAATGGACCCTA+CGG | + | chr4.3:12882975-12882994 | None:intergenic | 45.0% | |
| GCAATGGCATTTGGAGATAC+TGG | - | chr4.3:12883581-12883600 | MS.gene058831:intron | 45.0% | |
| GGAGTGGTCCTTGTTAAGTA+AGG | + | chr4.3:12882609-12882628 | None:intergenic | 45.0% | |
| GTCGATGAACAATAGACGGT+TGG | - | chr4.3:12880033-12880052 | MS.gene058831:CDS | 45.0% | |
| TAAGGACTCAACGACTCCAA+TGG | + | chr4.3:12882910-12882929 | None:intergenic | 45.0% | |
| TAGTGCTCCGGATCCTAAAT+GGG | - | chr4.3:12880641-12880660 | MS.gene058831:CDS | 45.0% | |
| TATAAGGACCTCTCTCTCCT+GGG | - | chr4.3:12882689-12882708 | MS.gene058831:intron | 45.0% | |
| TCTCTCTCCTGGGTAACTAA+CGG | - | chr4.3:12882699-12882718 | MS.gene058831:intron | 45.0% | |
| TGGTCCAAATTGCTGAGGAA+CGG | + | chr4.3:12883192-12883211 | None:intergenic | 45.0% | |
| TTGTCCGTTCCTCAGCAATT+TGG | - | chr4.3:12883185-12883204 | MS.gene058831:CDS | 45.0% | |
| ! | ACTTACGCCCATTTAGGATC+CGG | + | chr4.3:12880651-12880670 | None:intergenic | 45.0% |
| ! | ATTAGAGCATCTCCAATGGG+GGG | - | chr4.3:12882582-12882601 | MS.gene058831:intron | 45.0% |
| ! | GATGCAATGATGGAAGTTGG+AGG | - | chr4.3:12881736-12881755 | MS.gene058831:intron | 45.0% |
| !! | TTGTGCTGATTGTAGTGCTC+CGG | - | chr4.3:12880629-12880648 | MS.gene058831:CDS | 45.0% |
| !!! | TGTTTTGAAGCTTGGCCAAC+AGG | - | chr4.3:12882534-12882553 | MS.gene058831:intron | 45.0% |
| CTCTCTCCTGGGTAACTAAC+GGG | - | chr4.3:12882700-12882719 | MS.gene058831:intron | 50.0% | |
| GTAGTGCTCCGGATCCTAAA+TGG | - | chr4.3:12880640-12880659 | MS.gene058831:CDS | 50.0% | |
| GTCACCGTAGGGTCCATTTA+AGG | - | chr4.3:12882968-12882987 | MS.gene058831:intron | 50.0% | |
| GTTAAGTAAGGACCCCCCAT+TGG | + | chr4.3:12882597-12882616 | None:intergenic | 50.0% | |
| GTTAGTTACCCAGGAGAGAG+AGG | + | chr4.3:12882700-12882719 | None:intergenic | 50.0% | |
| TGGGGGGTCCTTACTTAACA+AGG | - | chr4.3:12882598-12882617 | MS.gene058831:intron | 50.0% | |
| TTGAAGCTTGGCCAACAGGT+TGG | - | chr4.3:12882538-12882557 | MS.gene058831:intron | 50.0% | |
| AACAAGGACCACTCCCCGTT+AGG | - | chr4.3:12882614-12882633 | MS.gene058831:intron | 55.0% | |
| CCTCCAATGGAGGGTCCTAA+CGG | + | chr4.3:12882632-12882651 | None:intergenic | 55.0% | |
| CGTTCTTCATGACTGGCGTC+TGG | + | chr4.3:12881823-12881842 | None:intergenic | 55.0% | |
| CTCCAATGGAGGGTCCTAAC+GGG | + | chr4.3:12882631-12882650 | None:intergenic | 55.0% | |
| TCCAATGGAGGGTCCTAACG+GGG | + | chr4.3:12882630-12882649 | None:intergenic | 55.0% | |
| TGTGGGGTGCACAGAAGTCT+TGG | - | chr4.3:12880908-12880927 | MS.gene058831:intron | 55.0% | |
| CCGTTAGGACCCTCCATTGG+AGG | - | chr4.3:12882629-12882648 | MS.gene058831:intron | 60.0% | |
| GTGGGACCCGTTAGTTACCC+AGG | + | chr4.3:12882709-12882728 | None:intergenic | 60.0% | |
| TCATGACTGGCGTCTGGTCC+TGG | + | chr4.3:12881817-12881836 | None:intergenic | 60.0% | |
| TCCCCGTTAGGACCCTCCAT+TGG | - | chr4.3:12882626-12882645 | MS.gene058831:intron | 60.0% | |
| TGGAGGGTCCTAACGGGGAG+TGG | + | chr4.3:12882625-12882644 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 12880031 | 12883781 | 12880031 | ID=MS.gene058831 |
| chr4.3 | mRNA | 12880031 | 12883781 | 12880031 | ID=MS.gene058831.t1;Parent=MS.gene058831 |
| chr4.3 | exon | 12883736 | 12883781 | 12883736 | ID=MS.gene058831.t1.exon1;Parent=MS.gene058831.t1 |
| chr4.3 | CDS | 12883736 | 12883781 | 12883736 | ID=cds.MS.gene058831.t1;Parent=MS.gene058831.t1 |
| chr4.3 | exon | 12883148 | 12883229 | 12883148 | ID=MS.gene058831.t1.exon2;Parent=MS.gene058831.t1 |
| chr4.3 | CDS | 12883148 | 12883229 | 12883148 | ID=cds.MS.gene058831.t1;Parent=MS.gene058831.t1 |
| chr4.3 | exon | 12882866 | 12882941 | 12882866 | ID=MS.gene058831.t1.exon3;Parent=MS.gene058831.t1 |
| chr4.3 | CDS | 12882866 | 12882941 | 12882866 | ID=cds.MS.gene058831.t1;Parent=MS.gene058831.t1 |
| chr4.3 | exon | 12881955 | 12882118 | 12881955 | ID=MS.gene058831.t1.exon4;Parent=MS.gene058831.t1 |
| chr4.3 | CDS | 12881955 | 12882118 | 12881955 | ID=cds.MS.gene058831.t1;Parent=MS.gene058831.t1 |
| chr4.3 | exon | 12881528 | 12881657 | 12881528 | ID=MS.gene058831.t1.exon5;Parent=MS.gene058831.t1 |
| chr4.3 | CDS | 12881528 | 12881657 | 12881528 | ID=cds.MS.gene058831.t1;Parent=MS.gene058831.t1 |
| chr4.3 | exon | 12881257 | 12881373 | 12881257 | ID=MS.gene058831.t1.exon6;Parent=MS.gene058831.t1 |
| chr4.3 | CDS | 12881257 | 12881373 | 12881257 | ID=cds.MS.gene058831.t1;Parent=MS.gene058831.t1 |
| chr4.3 | exon | 12880592 | 12880687 | 12880592 | ID=MS.gene058831.t1.exon7;Parent=MS.gene058831.t1 |
| chr4.3 | CDS | 12880592 | 12880687 | 12880592 | ID=cds.MS.gene058831.t1;Parent=MS.gene058831.t1 |
| chr4.3 | exon | 12880031 | 12880312 | 12880031 | ID=MS.gene058831.t1.exon8;Parent=MS.gene058831.t1 |
| chr4.3 | CDS | 12880031 | 12880312 | 12880031 | ID=cds.MS.gene058831.t1;Parent=MS.gene058831.t1 |
| Gene Sequence |
| Protein sequence |
