Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058821.t1 | AET04392.2 | 98.1 | 320 | 6 | 0 | 11 | 330 | 3 | 322 | 4.70E-176 | 627.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058821.t1 | Q9FVJ3 | 72.3 | 328 | 82 | 2 | 11 | 329 | 9 | 336 | 1.5e-135 | 483.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058821.t1 | G7L835 | 98.1 | 320 | 6 | 0 | 11 | 330 | 3 | 322 | 3.4e-176 | 627.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058821 | MS.gene058831 | 0.978283 | 1.68E-145 | -1.69E-46 |
| MS.gene058821 | MS.gene27907 | 0.960097 | 3.57E-118 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66767 | MS.gene058821 | PPI |
| MS.gene007227 | MS.gene058821 | PPI |
| MS.gene056211 | MS.gene058821 | PPI |
| MS.gene058821 | MS.gene74542 | PPI |
| MS.gene65789 | MS.gene058821 | PPI |
| MS.gene016627 | MS.gene058821 | PPI |
| MS.gene058821 | MS.gene03069 | PPI |
| MS.gene058821 | MS.gene071746 | PPI |
| MS.gene058821 | MS.gene050322 | PPI |
| MS.gene058821 | MS.gene90412 | PPI |
| MS.gene40748 | MS.gene058821 | PPI |
| MS.gene034468 | MS.gene058821 | PPI |
| MS.gene02100 | MS.gene058821 | PPI |
| MS.gene058821 | MS.gene20985 | PPI |
| MS.gene058821 | MS.gene47863 | PPI |
| MS.gene039700 | MS.gene058821 | PPI |
| MS.gene058821 | MS.gene84339 | PPI |
| MS.gene058821 | MS.gene003302 | PPI |
| MS.gene43051 | MS.gene058821 | PPI |
| MS.gene27907 | MS.gene058821 | PPI |
| MS.gene058821 | MS.gene058831 | PPI |
| MS.gene058821 | MS.gene90413 | PPI |
| MS.gene058821 | MS.gene85519 | PPI |
| MS.gene058821 | MS.gene35396 | PPI |
| MS.gene058821 | MS.gene005346 | PPI |
| MS.gene058821 | MS.gene023667 | PPI |
| MS.gene21056 | MS.gene058821 | PPI |
| MS.gene92445 | MS.gene058821 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058821.t1 | MTR_8g088320 | 97.819 | 321 | 7 | 0 | 10 | 330 | 2 | 322 | 0.0 | 654 |
| MS.gene058821.t1 | MTR_2g030230 | 78.419 | 329 | 69 | 2 | 2 | 330 | 3 | 329 | 0.0 | 537 |
| MS.gene058821.t1 | MTR_3g017500 | 45.559 | 349 | 152 | 3 | 17 | 328 | 21 | 368 | 2.19e-112 | 331 |
| MS.gene058821.t1 | MTR_3g017500 | 45.559 | 349 | 152 | 3 | 17 | 328 | 51 | 398 | 8.08e-112 | 330 |
| MS.gene058821.t1 | MTR_8g038400 | 44.571 | 350 | 157 | 2 | 16 | 328 | 16 | 365 | 2.86e-109 | 323 |
| MS.gene058821.t1 | MTR_8g107340 | 39.205 | 176 | 106 | 1 | 153 | 328 | 1 | 175 | 5.33e-42 | 144 |
| MS.gene058821.t1 | MTR_6g069470 | 43.750 | 160 | 89 | 1 | 169 | 328 | 13 | 171 | 5.40e-42 | 144 |
| MS.gene058821.t1 | MTR_2g027100 | 45.783 | 166 | 77 | 2 | 169 | 327 | 1 | 160 | 6.61e-41 | 140 |
| MS.gene058821.t1 | MTR_3g067585 | 43.125 | 160 | 90 | 1 | 169 | 328 | 1 | 159 | 1.31e-40 | 140 |
| MS.gene058821.t1 | MTR_2g011590 | 40.764 | 157 | 92 | 1 | 172 | 328 | 3 | 158 | 1.62e-39 | 137 |
| MS.gene058821.t1 | MTR_1g031650 | 44.304 | 158 | 86 | 2 | 172 | 328 | 5 | 161 | 3.71e-36 | 129 |
| MS.gene058821.t1 | MTR_4g084280 | 40.625 | 160 | 94 | 1 | 169 | 328 | 1 | 159 | 1.64e-34 | 124 |
| MS.gene058821.t1 | MTR_8g464390 | 39.597 | 149 | 74 | 4 | 17 | 159 | 16 | 154 | 8.43e-28 | 113 |
| MS.gene058821.t1 | MTR_2g080950 | 44.828 | 116 | 56 | 2 | 17 | 132 | 16 | 123 | 7.24e-27 | 110 |
| MS.gene058821.t1 | MTR_6g080710 | 35.323 | 201 | 97 | 5 | 20 | 219 | 19 | 187 | 2.89e-26 | 105 |
| MS.gene058821.t1 | MTR_1g031650 | 42.742 | 124 | 70 | 1 | 205 | 328 | 2 | 124 | 1.41e-23 | 94.7 |
| MS.gene058821.t1 | MTR_1g069000 | 46.739 | 92 | 47 | 2 | 14 | 104 | 1 | 91 | 3.77e-21 | 94.4 |
| MS.gene058821.t1 | MTR_7g099830 | 45.455 | 88 | 47 | 1 | 14 | 101 | 1 | 87 | 1.21e-20 | 92.4 |
| MS.gene058821.t1 | MTR_7g020860 | 41.538 | 130 | 51 | 5 | 29 | 134 | 514 | 642 | 1.92e-20 | 92.8 |
| MS.gene058821.t1 | MTR_8g100100 | 35.507 | 138 | 64 | 3 | 29 | 142 | 512 | 648 | 8.10e-19 | 87.8 |
| MS.gene058821.t1 | MTR_8g100100 | 35.507 | 138 | 64 | 3 | 29 | 142 | 506 | 642 | 8.38e-19 | 87.8 |
| MS.gene058821.t1 | MTR_7g020860 | 43.220 | 118 | 42 | 5 | 32 | 125 | 517 | 633 | 9.82e-19 | 87.4 |
| MS.gene058821.t1 | MTR_8g067080 | 41.772 | 79 | 45 | 1 | 20 | 98 | 13 | 90 | 3.55e-17 | 82.0 |
| MS.gene058821.t1 | MTR_8g067080 | 41.772 | 79 | 45 | 1 | 20 | 98 | 13 | 90 | 3.72e-17 | 82.0 |
| MS.gene058821.t1 | MTR_8g471110 | 41.772 | 79 | 45 | 1 | 20 | 98 | 13 | 90 | 3.72e-17 | 82.0 |
| MS.gene058821.t1 | MTR_4g074170 | 38.532 | 109 | 55 | 3 | 29 | 126 | 491 | 598 | 5.15e-17 | 82.4 |
| MS.gene058821.t1 | MTR_8g067090 | 38.614 | 101 | 57 | 4 | 20 | 119 | 13 | 109 | 6.05e-17 | 81.3 |
| MS.gene058821.t1 | MTR_8g471120 | 38.614 | 101 | 57 | 4 | 20 | 119 | 13 | 109 | 6.05e-17 | 81.3 |
| MS.gene058821.t1 | MTR_3g098680 | 40.777 | 103 | 54 | 3 | 29 | 125 | 509 | 610 | 3.40e-16 | 80.1 |
| MS.gene058821.t1 | MTR_8g464390 | 35.398 | 113 | 57 | 4 | 53 | 159 | 1 | 103 | 9.42e-13 | 68.9 |
| MS.gene058821.t1 | MTR_2g080950 | 41.250 | 80 | 39 | 2 | 53 | 132 | 1 | 72 | 8.21e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058821.t1 | AT4G21160 | 71.818 | 330 | 84 | 2 | 10 | 330 | 8 | 337 | 0.0 | 507 |
| MS.gene058821.t1 | AT4G21160 | 71.818 | 330 | 84 | 2 | 10 | 330 | 8 | 337 | 0.0 | 507 |
| MS.gene058821.t1 | AT4G21160 | 71.818 | 330 | 84 | 2 | 10 | 330 | 8 | 337 | 0.0 | 507 |
| MS.gene058821.t1 | AT4G21160 | 71.818 | 330 | 84 | 2 | 10 | 330 | 8 | 337 | 0.0 | 507 |
| MS.gene058821.t1 | AT4G05330 | 69.643 | 336 | 94 | 2 | 3 | 330 | 1 | 336 | 2.17e-178 | 497 |
| MS.gene058821.t1 | AT4G05330 | 69.643 | 336 | 94 | 2 | 3 | 330 | 1 | 336 | 2.17e-178 | 497 |
| MS.gene058821.t1 | AT4G05330 | 70.847 | 295 | 78 | 2 | 44 | 330 | 7 | 301 | 2.32e-157 | 442 |
| MS.gene058821.t1 | AT3G07940 | 47.774 | 337 | 151 | 2 | 17 | 328 | 47 | 383 | 1.57e-113 | 334 |
| MS.gene058821.t1 | AT3G07940 | 47.642 | 212 | 86 | 2 | 19 | 205 | 49 | 260 | 1.60e-63 | 202 |
| MS.gene058821.t1 | AT1G73580 | 43.558 | 163 | 91 | 1 | 166 | 328 | 1 | 162 | 1.02e-40 | 140 |
| MS.gene058821.t1 | AT5G37740 | 43.558 | 163 | 88 | 2 | 169 | 328 | 1 | 162 | 1.92e-40 | 140 |
| MS.gene058821.t1 | AT1G70790 | 46.753 | 154 | 81 | 1 | 173 | 325 | 6 | 159 | 2.82e-40 | 140 |
| MS.gene058821.t1 | AT1G70790 | 46.753 | 154 | 81 | 1 | 173 | 325 | 6 | 159 | 2.82e-40 | 140 |
| MS.gene058821.t1 | AT1G70790 | 46.753 | 154 | 81 | 1 | 173 | 325 | 6 | 159 | 2.82e-40 | 140 |
| MS.gene058821.t1 | AT3G17980 | 40.625 | 160 | 94 | 1 | 169 | 328 | 13 | 171 | 2.88e-39 | 137 |
| MS.gene058821.t1 | AT2G01540 | 42.208 | 154 | 88 | 1 | 173 | 325 | 6 | 159 | 2.18e-37 | 132 |
| MS.gene058821.t1 | AT1G70800 | 39.241 | 158 | 95 | 1 | 169 | 326 | 10 | 166 | 4.29e-37 | 131 |
| MS.gene058821.t1 | AT5G37740 | 41.040 | 173 | 88 | 3 | 169 | 328 | 1 | 172 | 4.42e-37 | 131 |
| MS.gene058821.t1 | AT1G70810 | 39.375 | 160 | 96 | 1 | 169 | 328 | 1 | 159 | 9.66e-37 | 130 |
| MS.gene058821.t1 | AT1G48590 | 39.375 | 160 | 96 | 1 | 169 | 328 | 6 | 164 | 6.07e-36 | 128 |
| MS.gene058821.t1 | AT1G48590 | 39.375 | 160 | 96 | 1 | 169 | 328 | 6 | 164 | 6.07e-36 | 128 |
| MS.gene058821.t1 | AT1G48590 | 39.375 | 160 | 96 | 1 | 169 | 328 | 37 | 195 | 7.61e-36 | 129 |
| MS.gene058821.t1 | AT1G66360 | 41.615 | 161 | 93 | 1 | 169 | 328 | 1 | 161 | 9.04e-36 | 128 |
| MS.gene058821.t1 | AT5G47710 | 40.606 | 165 | 85 | 2 | 169 | 326 | 1 | 159 | 1.14e-34 | 124 |
| MS.gene058821.t1 | AT5G47710 | 40.606 | 165 | 85 | 2 | 169 | 326 | 1 | 159 | 1.14e-34 | 124 |
| MS.gene058821.t1 | AT5G47710 | 40.606 | 165 | 85 | 2 | 169 | 326 | 1 | 159 | 1.14e-34 | 124 |
| MS.gene058821.t1 | AT5G47710 | 40.606 | 165 | 85 | 2 | 169 | 326 | 1 | 159 | 1.14e-34 | 124 |
| MS.gene058821.t1 | AT1G23140 | 35.000 | 160 | 103 | 1 | 169 | 328 | 1 | 159 | 2.42e-31 | 116 |
| MS.gene058821.t1 | AT3G17660 | 39.231 | 130 | 69 | 3 | 5 | 132 | 2 | 123 | 2.38e-29 | 111 |
| MS.gene058821.t1 | AT3G17660 | 39.231 | 130 | 69 | 3 | 5 | 132 | 2 | 123 | 8.18e-29 | 111 |
| MS.gene058821.t1 | AT3G17660 | 39.231 | 130 | 69 | 3 | 5 | 132 | 2 | 123 | 1.96e-28 | 110 |
| MS.gene058821.t1 | AT5G54310 | 38.406 | 138 | 75 | 3 | 5 | 140 | 2 | 131 | 4.93e-27 | 111 |
| MS.gene058821.t1 | AT1G70790 | 43.333 | 120 | 67 | 1 | 207 | 325 | 3 | 122 | 2.38e-25 | 99.8 |
| MS.gene058821.t1 | AT1G48590 | 31.250 | 160 | 77 | 2 | 169 | 328 | 37 | 163 | 5.84e-22 | 91.3 |
| MS.gene058821.t1 | AT3G17660 | 33.846 | 130 | 66 | 3 | 5 | 132 | 2 | 113 | 4.06e-20 | 87.8 |
| MS.gene058821.t1 | AT2G37550 | 44.318 | 88 | 48 | 1 | 14 | 101 | 1 | 87 | 1.45e-19 | 89.4 |
| MS.gene058821.t1 | AT2G37550 | 44.318 | 88 | 48 | 1 | 14 | 101 | 1 | 87 | 1.45e-19 | 89.4 |
| MS.gene058821.t1 | AT3G53710 | 43.182 | 88 | 49 | 1 | 14 | 101 | 1 | 87 | 1.65e-19 | 89.4 |
| MS.gene058821.t1 | AT3G53710 | 43.182 | 88 | 49 | 1 | 14 | 101 | 1 | 87 | 1.65e-19 | 89.4 |
| MS.gene058821.t1 | AT3G53710 | 43.182 | 88 | 49 | 1 | 14 | 101 | 1 | 87 | 1.65e-19 | 89.4 |
| MS.gene058821.t1 | AT2G35210 | 40.594 | 101 | 55 | 3 | 20 | 119 | 13 | 109 | 6.86e-19 | 86.7 |
| MS.gene058821.t1 | AT2G35210 | 40.594 | 101 | 55 | 3 | 20 | 119 | 13 | 109 | 1.16e-18 | 86.3 |
| MS.gene058821.t1 | AT5G13300 | 37.500 | 128 | 58 | 4 | 29 | 135 | 513 | 639 | 1.32e-18 | 87.4 |
| MS.gene058821.t1 | AT1G60860 | 35.570 | 149 | 76 | 5 | 29 | 158 | 308 | 455 | 2.30e-18 | 86.3 |
| MS.gene058821.t1 | AT1G60860 | 35.570 | 149 | 76 | 5 | 29 | 158 | 368 | 515 | 2.98e-18 | 85.9 |
| MS.gene058821.t1 | AT1G60860 | 35.570 | 149 | 76 | 5 | 29 | 158 | 479 | 626 | 3.32e-18 | 85.9 |
| MS.gene058821.t1 | AT1G10870 | 29.231 | 195 | 110 | 7 | 29 | 208 | 479 | 660 | 6.83e-18 | 85.1 |
| MS.gene058821.t1 | AT1G10870 | 30.000 | 200 | 107 | 8 | 29 | 208 | 479 | 665 | 1.21e-17 | 84.3 |
| MS.gene058821.t1 | AT5G46750 | 43.750 | 80 | 44 | 1 | 20 | 99 | 13 | 91 | 2.68e-17 | 82.4 |
| MS.gene058821.t1 | AT5G61980 | 46.053 | 76 | 38 | 2 | 29 | 102 | 510 | 584 | 8.23e-17 | 82.0 |
| MS.gene058821.t1 | AT4G17890 | 40.777 | 103 | 53 | 4 | 18 | 119 | 17 | 112 | 9.10e-17 | 80.9 |
| MS.gene058821.t1 | AT4G17890 | 39.604 | 101 | 56 | 3 | 20 | 119 | 16 | 112 | 1.25e-16 | 80.5 |
| MS.gene058821.t1 | AT3G17660 | 37.500 | 80 | 42 | 2 | 53 | 132 | 1 | 72 | 1.65e-12 | 65.9 |
Find 62 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATAGACGGTTGGAATT+TGG | 0.165631 | 4.3:-12941591 | MS.gene058821:CDS |
| GCCATTGCAGAATTTATTAA+AGG | 0.185985 | 4.3:+12938507 | None:intergenic |
| TGTAACCTTACCAAACTTAT+TGG | 0.212227 | 4.3:+12938864 | None:intergenic |
| AAGAAGATTGAAGGATTTAT+TGG | 0.242961 | 4.3:-12941044 | MS.gene058821:CDS |
| GAAGGAATGGTAGAATTTAT+TGG | 0.252239 | 4.3:-12939192 | MS.gene058821:CDS |
| ATTCTCCACATTCGACATTC+TGG | 0.255352 | 4.3:+12938352 | None:intergenic |
| GAATAAACTTACGCCCATTT+AGG | 0.255700 | 4.3:+12940977 | None:intergenic |
| GTAGTGCTCCGGATCCTAAA+TGG | 0.293236 | 4.3:-12940991 | MS.gene058821:CDS |
| TTGTCCGTTCCTCAGCAATT+TGG | 0.300614 | 4.3:-12938888 | MS.gene058821:CDS |
| GCAATGGCATTTGGAGATAC+TGG | 0.302939 | 4.3:-12938492 | MS.gene058821:CDS |
| GTTCTCGGCTGATGATATAA+TGG | 0.310794 | 4.3:-12938553 | MS.gene058821:CDS |
| ATAAATTCTGCAATGGCATT+TGG | 0.314753 | 4.3:-12938501 | MS.gene058821:CDS |
| ACAATAGACGGTTGGAATTT+GGG | 0.317344 | 4.3:-12941590 | MS.gene058821:CDS |
| ATCTAGTGGTTCAAAGAATA+TGG | 0.320374 | 4.3:-12939368 | MS.gene058821:intron |
| TTCTTCAGGTCAGCAAATAT+TGG | 0.330231 | 4.3:-12940768 | MS.gene058821:intron |
| GGAGTAATTTGAATCCAGTT+TGG | 0.344163 | 4.3:-12938926 | MS.gene058821:CDS |
| GCAATTTGGACCAATAAGTT+TGG | 0.353128 | 4.3:-12938874 | MS.gene058821:intron |
| ATGATATGCGTATAGGAAAA+TGG | 0.354086 | 4.3:-12938461 | MS.gene058821:CDS |
| TCATGACTGGCGTCTGGTCC+TGG | 0.366903 | 4.3:+12939817 | None:intergenic |
| GTGGATGTCTCTTGATCATT+AGG | 0.379350 | 4.3:-12938313 | None:intergenic |
| ATCTGCCAATTCAATTTATG+AGG | 0.388056 | 4.3:-12939866 | MS.gene058821:CDS |
| ATAAGTTCCTCGTTCCAAAC+TGG | 0.391227 | 4.3:+12938912 | None:intergenic |
| AAAAGCCTCATAAATTGAAT+TGG | 0.395677 | 4.3:+12939861 | None:intergenic |
| CCAAGCTTCAAAACAACATA+TGG | 0.397782 | 4.3:+12939105 | None:intergenic |
| CTGTTCAGACGACTGTAATA+AGG | 0.399690 | 4.3:-12938947 | MS.gene058821:CDS |
| TTGTATGCTTAAAATGTTGT+GGG | 0.417828 | 4.3:-12940740 | MS.gene058821:CDS |
| ATTTGATCATGACTTGTTCT+CGG | 0.424924 | 4.3:-12938568 | MS.gene058821:CDS |
| TACAGGTAAAAGAAGATTGA+AGG | 0.424972 | 4.3:-12941053 | MS.gene058821:intron |
| TTCTCGGCTGATGATATAAT+GGG | 0.430169 | 4.3:-12938552 | MS.gene058821:CDS |
| AGCATAGTCAATATCATTGA+TGG | 0.443930 | 4.3:-12938405 | MS.gene058821:CDS |
| TGTCTGTAACATTGGATGAA+TGG | 0.468188 | 4.3:-12939933 | MS.gene058821:CDS |
| CGTTCTTCATGACTGGCGTC+TGG | 0.471968 | 4.3:+12939811 | None:intergenic |
| AGTCAATATCATTGATGGTA+AGG | 0.482666 | 4.3:-12938400 | MS.gene058821:CDS |
| AAACATAACATACTTGATAC+AGG | 0.485779 | 4.3:+12941564 | None:intergenic |
| TAATGACAACGCGCTTATAG+AGG | 0.487418 | 4.3:-12938430 | MS.gene058821:CDS |
| ATAGATGCAATGATGGAAGT+TGG | 0.488889 | 4.3:-12939898 | MS.gene058821:CDS |
| ATGTTTGATGATATGCGTAT+AGG | 0.495087 | 4.3:-12938468 | MS.gene058821:CDS |
| TTGTGCTGATTGTAGTGCTC+CGG | 0.495186 | 4.3:-12941002 | MS.gene058821:CDS |
| AAGAACGTGCAAAATTCATC+AGG | 0.500258 | 4.3:-12939795 | MS.gene058821:intron |
| TAGTGCTCCGGATCCTAAAT+GGG | 0.500733 | 4.3:-12940990 | MS.gene058821:CDS |
| ACCTTTAATAAATTCTGCAA+TGG | 0.502560 | 4.3:-12938508 | MS.gene058821:CDS |
| ACTTACGCCCATTTAGGATC+CGG | 0.503153 | 4.3:+12940983 | None:intergenic |
| TGATGAAATAGATGCAATGA+TGG | 0.538280 | 4.3:-12939905 | MS.gene058821:CDS |
| AATTAAACTTAGAACTTGAG+TGG | 0.550387 | 4.3:-12938332 | MS.gene058821:CDS |
| GTCGATGAACAATAGACGGT+TGG | 0.555087 | 4.3:-12941598 | MS.gene058821:CDS |
| TTTGTATGCTTAAAATGTTG+TGG | 0.556153 | 4.3:-12940741 | MS.gene058821:CDS |
| TGTGGGGTGCACAGAAGTCT+TGG | 0.558109 | 4.3:-12940723 | MS.gene058821:CDS |
| ATTTAGCAATCAGAGATATG+AGG | 0.559392 | 4.3:-12939137 | MS.gene058821:CDS |
| CCGGAAGGATATACAAAACC+AGG | 0.574677 | 4.3:-12939835 | MS.gene058821:CDS |
| ATGGTGAAAATAGGAAGGAA+TGG | 0.575850 | 4.3:-12939205 | MS.gene058821:intron |
| TGGTCCAAATTGCTGAGGAA+CGG | 0.581432 | 4.3:+12938884 | None:intergenic |
| GATAGCTTTCGAAAATCTAG+TGG | 0.590041 | 4.3:-12939382 | MS.gene058821:CDS |
| GATGCAATGATGGAAGTTGG+AGG | 0.591464 | 4.3:-12939895 | MS.gene058821:CDS |
| TGGAATGCTGAAAGTGAAAG+TGG | 0.593242 | 4.3:-12939172 | MS.gene058821:CDS |
| CTGAAAGTGAAAGTGGTCAA+AGG | 0.594303 | 4.3:-12939165 | MS.gene058821:CDS |
| GGATGTCGATGAACAATAGA+CGG | 0.602168 | 4.3:-12941602 | MS.gene058821:CDS |
| TCTTGGCACTCATATATCAA+AGG | 0.604306 | 4.3:-12940706 | MS.gene058821:intron |
| CTTATTGGTCCAAATTGCTG+AGG | 0.607175 | 4.3:+12938879 | None:intergenic |
| TGTATGCTTAAAATGTTGTG+GGG | 0.631760 | 4.3:-12940739 | MS.gene058821:CDS |
| AAGCTCCAGAATGTCGAATG+TGG | 0.636564 | 4.3:-12938357 | MS.gene058821:CDS |
| TTTGAATCCAGTTTGGAACG+AGG | 0.647447 | 4.3:-12938919 | MS.gene058821:CDS |
| ATAGACGGTTGGAATTTGGG+AGG | 0.688403 | 4.3:-12941587 | MS.gene058821:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATTTCACACTTAAA+TGG | + | chr4.3:12940398-12940417 | None:intergenic | 15.0% |
| !! | GATATAATCCATTAAAATTT+AGG | + | chr4.3:12938508-12938527 | None:intergenic | 15.0% |
| !! | TGAAATAATTGAAAAACTAA+CGG | - | chr4.3:12939309-12939328 | MS.gene058821:intron | 15.0% |
| !!! | ATGTATTGTTTTAGATATAT+TGG | + | chr4.3:12941199-12941218 | None:intergenic | 15.0% |
| !!! | TATAATATGTATGTTTTTCA+AGG | - | chr4.3:12938613-12938632 | MS.gene058821:intron | 15.0% |
| !! | AAACTACATAAATTGTTTAC+AGG | + | chr4.3:12941135-12941154 | None:intergenic | 20.0% |
| !! | ATATATATATTACTACCGTA+TGG | - | chr4.3:12939509-12939528 | MS.gene058821:intron | 20.0% |
| !! | CAAATTACATGTTTAAAAAC+AGG | - | chr4.3:12938725-12938744 | MS.gene058821:intron | 20.0% |
| !! | GAAATAATTGAAAAACTAAC+GGG | - | chr4.3:12939310-12939329 | MS.gene058821:intron | 20.0% |
| !! | TAAAAAAATTAGTAGGACAA+TGG | + | chr4.3:12939723-12939742 | None:intergenic | 20.0% |
| !! | TGAATGATATTGAATATTGA+TGG | - | chr4.3:12940690-12940709 | MS.gene058821:intron | 20.0% |
| !! | TTTCAATAGCATATACTATT+AGG | - | chr4.3:12940848-12940867 | MS.gene058821:intron | 20.0% |
| !! | TTTCAATTATTTCAAGACAA+GGG | + | chr4.3:12939303-12939322 | None:intergenic | 20.0% |
| !!! | AAGGATGTTCTTTTATATTT+GGG | - | chr4.3:12939473-12939492 | MS.gene058821:CDS | 20.0% |
| !!! | CTTTCTTTTTAAATTGACAA+TGG | - | chr4.3:12940928-12940947 | MS.gene058821:intron | 20.0% |
| !!! | TAATTTAAAAAAGAGTGTGT+TGG | + | chr4.3:12938471-12938490 | None:intergenic | 20.0% |
| !!! | TTTTCAATTATTTCAAGACA+AGG | + | chr4.3:12939304-12939323 | None:intergenic | 20.0% |
| ! | AAAAGCCTCATAAATTGAAT+TGG | + | chr4.3:12940056-12940075 | None:intergenic | 25.0% |
| ! | AAACATAACATACTTGATAC+AGG | + | chr4.3:12938353-12938372 | None:intergenic | 25.0% |
| ! | AAGAAGATTGAAGGATTTAT+TGG | - | chr4.3:12938870-12938889 | MS.gene058821:intron | 25.0% |
| ! | AAGGAAAAACTAAACCAAAA+TGG | + | chr4.3:12938814-12938833 | None:intergenic | 25.0% |
| ! | AAGTTTCTCCAAAAAGATTA+TGG | - | chr4.3:12940510-12940529 | MS.gene058821:intron | 25.0% |
| ! | AATAAACAAAAAAGGTTGTG+TGG | + | chr4.3:12938969-12938988 | None:intergenic | 25.0% |
| ! | AATATGAGAAGAGCAAAATT+TGG | + | chr4.3:12940238-12940257 | None:intergenic | 25.0% |
| ! | AATCCATTAAAATTTAGGAG+CGG | + | chr4.3:12938503-12938522 | None:intergenic | 25.0% |
| ! | AATTAAACTTAGAACTTGAG+TGG | - | chr4.3:12941582-12941601 | MS.gene058821:CDS | 25.0% |
| ! | ACACAAATACATTCAATCAA+AGG | + | chr4.3:12940587-12940606 | None:intergenic | 25.0% |
| ! | ACCTTTAATAAATTCTGCAA+TGG | - | chr4.3:12941406-12941425 | MS.gene058821:intron | 25.0% |
| ! | ATACATACAAATGTGTATGT+GGG | - | chr4.3:12939348-12939367 | MS.gene058821:intron | 25.0% |
| ! | ATATGAGAAGAGCAAAATTT+GGG | + | chr4.3:12940237-12940256 | None:intergenic | 25.0% |
| ! | ATATTGACATTTATGATTGC+AGG | - | chr4.3:12940416-12940435 | MS.gene058821:intron | 25.0% |
| ! | TTCATATACAAGACATTGTA+AGG | + | chr4.3:12941280-12941299 | None:intergenic | 25.0% |
| ! | TTCTTACTATGAATAGATTG+AGG | - | chr4.3:12939786-12939805 | MS.gene058821:intron | 25.0% |
| ! | TTGTATGCTTAAAATGTTGT+GGG | - | chr4.3:12939174-12939193 | MS.gene058821:CDS | 25.0% |
| ! | TTTGTATGCTTAAAATGTTG+TGG | - | chr4.3:12939173-12939192 | MS.gene058821:CDS | 25.0% |
| !! | AAAGCTATCCATAATCTTTT+TGG | + | chr4.3:12940521-12940540 | None:intergenic | 25.0% |
| !! | AATTTATGAGGCTTTTATTC+CGG | - | chr4.3:12940060-12940079 | MS.gene058821:intron | 25.0% |
| !! | GAAGGATGTTCTTTTATATT+TGG | - | chr4.3:12939472-12939491 | MS.gene058821:CDS | 25.0% |
| !! | GTTTTCATGAGTGATTTTAA+TGG | - | chr4.3:12940662-12940681 | MS.gene058821:intron | 25.0% |
| !!! | ACCTTTTTTGTTTATTGTCA+TGG | - | chr4.3:12938973-12938992 | MS.gene058821:intron | 25.0% |
| !!! | ATTGCACTTTGAAATTCAAA+AGG | - | chr4.3:12939761-12939780 | MS.gene058821:intron | 25.0% |
| !!! | GTATTGGTTAAAATCTTTGT+CGG | - | chr4.3:12938682-12938701 | MS.gene058821:intron | 25.0% |
| !!! | GTCCTACTAATTTTTTTAGA+CGG | - | chr4.3:12939725-12939744 | MS.gene058821:intron | 25.0% |
| !!! | TACAAATTGTGTTGGTTATA+TGG | - | chr4.3:12938656-12938675 | MS.gene058821:intron | 25.0% |
| !!! | TCCTACTAATTTTTTTAGAC+GGG | - | chr4.3:12939726-12939745 | MS.gene058821:intron | 25.0% |
| !!! | TGAATATTGATGGTGAAAAT+AGG | - | chr4.3:12940700-12940719 | MS.gene058821:intron | 25.0% |
| AACAACCAACCATTCTTATA+TGG | - | chr4.3:12939429-12939448 | MS.gene058821:CDS | 30.0% | |
| AACGATTTAAGGAAAAGTAG+TGG | - | chr4.3:12938752-12938771 | MS.gene058821:intron | 30.0% | |
| ACAAAATCTGACAAGGAAAA+AGG | + | chr4.3:12939964-12939983 | None:intergenic | 30.0% | |
| AGCATAGTCAATATCATTGA+TGG | - | chr4.3:12941509-12941528 | MS.gene058821:intron | 30.0% | |
| AGTGCTAAACTTAATGATCT+AGG | - | chr4.3:12939611-12939630 | MS.gene058821:intron | 30.0% | |
| ATAAATTCTGCAATGGCATT+TGG | - | chr4.3:12941413-12941432 | MS.gene058821:intron | 30.0% | |
| ATCTAGTGGTTCAAAGAATA+TGG | - | chr4.3:12940546-12940565 | MS.gene058821:intron | 30.0% | |
| ATCTGCCAATTCAATTTATG+AGG | - | chr4.3:12940048-12940067 | MS.gene058821:intron | 30.0% | |
| ATGATATGCGTATAGGAAAA+TGG | - | chr4.3:12941453-12941472 | MS.gene058821:intron | 30.0% | |
| ATTTAGCAATCAGAGATATG+AGG | - | chr4.3:12940777-12940796 | MS.gene058821:intron | 30.0% | |
| CAGTATGCTAATTCAACTTA+TGG | + | chr4.3:12940613-12940632 | None:intergenic | 30.0% | |
| CATACATACAAATGTGTATG+TGG | - | chr4.3:12939347-12939366 | MS.gene058821:intron | 30.0% | |
| GAAGGAATGGTAGAATTTAT+TGG | - | chr4.3:12940722-12940741 | MS.gene058821:CDS | 30.0% | |
| GAGGATAAATTAGTAGTATG+TGG | + | chr4.3:12939679-12939698 | None:intergenic | 30.0% | |
| GCCATGACAATAAACAAAAA+AGG | + | chr4.3:12938977-12938996 | None:intergenic | 30.0% | |
| GCCATTGCAGAATTTATTAA+AGG | + | chr4.3:12941410-12941429 | None:intergenic | 30.0% | |
| GTGCTAAACTTAATGATCTA+GGG | - | chr4.3:12939612-12939631 | MS.gene058821:intron | 30.0% | |
| TAATAATAGTCCATTGTGCT+TGG | - | chr4.3:12940294-12940313 | MS.gene058821:intron | 30.0% | |
| TAATTTATCCTCCATTCCAT+TGG | - | chr4.3:12939687-12939706 | MS.gene058821:intron | 30.0% | |
| TACAAATGTGACAGATTTCT+TGG | + | chr4.3:12939080-12939099 | None:intergenic | 30.0% | |
| TACAGGTAAAAGAAGATTGA+AGG | - | chr4.3:12938861-12938880 | MS.gene058821:intron | 30.0% | |
| TCCCGTCTAAAAAAATTAGT+AGG | + | chr4.3:12939730-12939749 | None:intergenic | 30.0% | |
| TCTATACATGAATAGAATCG+AGG | - | chr4.3:12939905-12939924 | MS.gene058821:CDS | 30.0% | |
| TGATGAAATAGATGCAATGA+TGG | - | chr4.3:12940009-12940028 | MS.gene058821:intron | 30.0% | |
| TGTAACCTTACCAAACTTAT+TGG | + | chr4.3:12941053-12941072 | None:intergenic | 30.0% | |
| TGTATGCTTAAAATGTTGTG+GGG | - | chr4.3:12939175-12939194 | MS.gene058821:CDS | 30.0% | |
| TGTTGATGTACAAATTGTGT+TGG | - | chr4.3:12938648-12938667 | MS.gene058821:intron | 30.0% | |
| ! | AAATGGAACGTTGATTGAAT+TGG | + | chr4.3:12940381-12940400 | None:intergenic | 30.0% |
| ! | ACTTTTTGTCACTGAAAAGT+AGG | - | chr4.3:12940178-12940197 | MS.gene058821:intron | 30.0% |
| ! | AGTCAATATCATTGATGGTA+AGG | - | chr4.3:12941514-12941533 | MS.gene058821:intron | 30.0% |
| ! | ATGTTTGATGATATGCGTAT+AGG | - | chr4.3:12941446-12941465 | MS.gene058821:intron | 30.0% |
| ! | GGAACTAGATTTTGCATTAT+AGG | + | chr4.3:12941114-12941133 | None:intergenic | 30.0% |
| ! | GTTGGTTATATGGTTTGTAT+TGG | - | chr4.3:12938666-12938685 | MS.gene058821:intron | 30.0% |
| ! | TATCCGCTCCTAAATTTTAA+TGG | - | chr4.3:12938497-12938516 | MS.gene058821:CDS | 30.0% |
| ! | TCAGATTTTGTCTGTAACAT+TGG | - | chr4.3:12939973-12939992 | MS.gene058821:intron | 30.0% |
| ! | TTAATGATCTAGGGTATAAG+AGG | - | chr4.3:12939621-12939640 | MS.gene058821:intron | 30.0% |
| ! | TTTAAAAAAGAGTGTGTTGG+TGG | + | chr4.3:12938468-12938487 | None:intergenic | 30.0% |
| !! | ACAAATGTCTTTGAAGTACT+TGG | - | chr4.3:12938552-12938571 | MS.gene058821:CDS | 30.0% |
| !! | ATTTGATCATGACTTGTTCT+CGG | - | chr4.3:12941346-12941365 | MS.gene058821:intron | 30.0% |
| !! | TATTGATGGTGAAAATAGGA+AGG | - | chr4.3:12940704-12940723 | MS.gene058821:intron | 30.0% |
| !!! | GTCGGAAATAATTTTTTCGA+AGG | - | chr4.3:12938700-12938719 | MS.gene058821:intron | 30.0% |
| !!! | TTTTTTTGAACTGCTTCTTC+AGG | - | chr4.3:12939132-12939151 | MS.gene058821:CDS | 30.0% |
| AAACAGGCATGAACGATTTA+AGG | - | chr4.3:12938741-12938760 | MS.gene058821:intron | 35.0% | |
| AACAATAGACGGTTGGAATT+TGG | - | chr4.3:12938323-12938342 | MS.gene058821:CDS | 35.0% | |
| AACATGCTTCATTGTATTGC+AGG | - | chr4.3:12941319-12941338 | MS.gene058821:intron | 35.0% | |
| AAGAACGTGCAAAATTCATC+AGG | - | chr4.3:12940119-12940138 | MS.gene058821:intron | 35.0% | |
| ACAATAGACGGTTGGAATTT+GGG | - | chr4.3:12938324-12938343 | MS.gene058821:CDS | 35.0% | |
| ACCAATCATTCAACTTCTCA+AGG | + | chr4.3:12938833-12938852 | None:intergenic | 35.0% | |
| ATGCTTGTGCAATAGTTTGA+AGG | - | chr4.3:12939454-12939473 | MS.gene058821:CDS | 35.0% | |
| ATGGTGAAAATAGGAAGGAA+TGG | - | chr4.3:12940709-12940728 | MS.gene058821:CDS | 35.0% | |
| ATTGAAAACAACCAACCTGT+TGG | + | chr4.3:12940835-12940854 | None:intergenic | 35.0% | |
| CAAGCATAGCCATATAAGAA+TGG | + | chr4.3:12939441-12939460 | None:intergenic | 35.0% | |
| CAATGGTTAGTGATTACCAA+TGG | + | chr4.3:12939706-12939725 | None:intergenic | 35.0% | |
| CATAGCCATATAAGAATGGT+TGG | + | chr4.3:12939437-12939456 | None:intergenic | 35.0% | |
| CCAAGCTTCAAAACAACATA+TGG | + | chr4.3:12940812-12940831 | None:intergenic | 35.0% | |
| GAATAAACTTACGCCCATTT+AGG | + | chr4.3:12938940-12938959 | None:intergenic | 35.0% | |
| GATAGCTTTCGAAAATCTAG+TGG | - | chr4.3:12940532-12940551 | MS.gene058821:intron | 35.0% | |
| GCAATTTGGACCAATAAGTT+TGG | - | chr4.3:12941040-12941059 | MS.gene058821:CDS | 35.0% | |
| GGAGTAATTTGAATCCAGTT+TGG | - | chr4.3:12940988-12941007 | MS.gene058821:intron | 35.0% | |
| GTTACAGACAAAATCTGACA+AGG | + | chr4.3:12939971-12939990 | None:intergenic | 35.0% | |
| GTTAGATCGATGGATAAGAT+AGG | - | chr4.3:12939826-12939845 | MS.gene058821:CDS | 35.0% | |
| GTTAGTGATTACCAATGGAA+TGG | + | chr4.3:12939701-12939720 | None:intergenic | 35.0% | |
| GTTCATGGTAGCATAAAAAG+TGG | - | chr4.3:12940353-12940372 | MS.gene058821:intron | 35.0% | |
| TAGGTAGAATGTAAGACAAG+AGG | - | chr4.3:12939845-12939864 | MS.gene058821:CDS | 35.0% | |
| TCCTTGAGAAGTTGAATGAT+TGG | - | chr4.3:12938829-12938848 | MS.gene058821:intron | 35.0% | |
| TCTTGGCACTCATATATCAA+AGG | - | chr4.3:12939208-12939227 | MS.gene058821:intron | 35.0% | |
| TGAGAAGTTGAATGATTGGT+AGG | - | chr4.3:12938833-12938852 | MS.gene058821:intron | 35.0% | |
| TGTAAGTTGTGTTAGATCGA+TGG | - | chr4.3:12939816-12939835 | MS.gene058821:CDS | 35.0% | |
| TGTCTGTAACATTGGATGAA+TGG | - | chr4.3:12939981-12940000 | MS.gene058821:intron | 35.0% | |
| TTAGAGCAACATTACGTATG+AGG | - | chr4.3:12941234-12941253 | MS.gene058821:intron | 35.0% | |
| TTCTCGGCTGATGATATAAT+GGG | - | chr4.3:12941362-12941381 | MS.gene058821:intron | 35.0% | |
| TTCTTCAGGTCAGCAAATAT+TGG | - | chr4.3:12939146-12939165 | MS.gene058821:CDS | 35.0% | |
| TTGGACCAATAAGTTTGGTA+AGG | - | chr4.3:12941045-12941064 | MS.gene058821:CDS | 35.0% | |
| ! | ATAGATGCAATGATGGAAGT+TGG | - | chr4.3:12940016-12940035 | MS.gene058821:intron | 35.0% |
| ! | ATGATTGGTAGGTCTTTTAC+AGG | - | chr4.3:12938844-12938863 | MS.gene058821:intron | 35.0% |
| ! | TGTGACATGAAAAGCCATTT+TGG | - | chr4.3:12938797-12938816 | MS.gene058821:intron | 35.0% |
| !! | TCATGGCCTTTCTAAAACTA+AGG | - | chr4.3:12938990-12939009 | MS.gene058821:intron | 35.0% |
| !!! | CCATATGTTGTTTTGAAGCT+TGG | - | chr4.3:12940809-12940828 | MS.gene058821:intron | 35.0% |
| !!! | CTCAGACCTTAGTTTTAGAA+AGG | + | chr4.3:12938999-12939018 | None:intergenic | 35.0% |
| AGTGATTACCAATGGAATGG+AGG | + | chr4.3:12939698-12939717 | None:intergenic | 40.0% | |
| ATAAGTTCCTCGTTCCAAAC+TGG | + | chr4.3:12941005-12941024 | None:intergenic | 40.0% | |
| ATGCTTCATTGTATTGCAGG+AGG | - | chr4.3:12941322-12941341 | MS.gene058821:intron | 40.0% | |
| ATTCTCCACATTCGACATTC+TGG | + | chr4.3:12941565-12941584 | None:intergenic | 40.0% | |
| CAATGCTTAACCAAGCACAA+TGG | + | chr4.3:12940307-12940326 | None:intergenic | 40.0% | |
| CATACAAATGTGTATGTGGG+TGG | - | chr4.3:12939351-12939370 | MS.gene058821:intron | 40.0% | |
| CTGAAAGTGAAAGTGGTCAA+AGG | - | chr4.3:12940749-12940768 | MS.gene058821:CDS | 40.0% | |
| CTGTTCAGACGACTGTAATA+AGG | - | chr4.3:12940967-12940986 | MS.gene058821:intron | 40.0% | |
| CTTATTGGTCCAAATTGCTG+AGG | + | chr4.3:12941038-12941057 | None:intergenic | 40.0% | |
| GCTGAAGACAAAGATTCATC+TGG | + | chr4.3:12940215-12940234 | None:intergenic | 40.0% | |
| GTTCTCGGCTGATGATATAA+TGG | - | chr4.3:12941361-12941380 | MS.gene058821:intron | 40.0% | |
| TAATGACAACGCGCTTATAG+AGG | - | chr4.3:12941484-12941503 | MS.gene058821:intron | 40.0% | |
| TGGAATGCTGAAAGTGAAAG+TGG | - | chr4.3:12940742-12940761 | MS.gene058821:CDS | 40.0% | |
| ! | ATGATCTAGGGTATAAGAGG+TGG | - | chr4.3:12939624-12939643 | MS.gene058821:intron | 40.0% |
| ! | ATGGCTTTTCATGTCACAAG+TGG | + | chr4.3:12938795-12938814 | None:intergenic | 40.0% |
| ! | TATGAGGCTTTTATTCCGGA+AGG | - | chr4.3:12940064-12940083 | MS.gene058821:intron | 40.0% |
| ! | TTTGAATCCAGTTTGGAACG+AGG | - | chr4.3:12940995-12941014 | MS.gene058821:CDS | 40.0% |
| ! | TTTTGCACGTTCTTCATGAC+TGG | + | chr4.3:12940113-12940132 | None:intergenic | 40.0% |
| !! | TGTAAGACAAGAGGAGTGTT+AGG | - | chr4.3:12939854-12939873 | MS.gene058821:CDS | 40.0% |
| !!! | CCTGGTTTTGTATATCCTTC+CGG | + | chr4.3:12940082-12940101 | None:intergenic | 40.0% |
| AAGCTCCAGAATGTCGAATG+TGG | - | chr4.3:12941557-12941576 | MS.gene058821:intron | 45.0% | |
| ATAGACGGTTGGAATTTGGG+AGG | - | chr4.3:12938327-12938346 | MS.gene058821:CDS | 45.0% | |
| CCGCAATCATGTATGCCATA+CGG | + | chr4.3:12939527-12939546 | None:intergenic | 45.0% | |
| CCGGAAGGATATACAAAACC+AGG | - | chr4.3:12940079-12940098 | MS.gene058821:intron | 45.0% | |
| CCGTATGGCATACATGATTG+CGG | - | chr4.3:12939524-12939543 | MS.gene058821:intron | 45.0% | |
| CGACATTGCGATGTTGTTCA+TGG | - | chr4.3:12940338-12940357 | MS.gene058821:intron | 45.0% | |
| GCAATGGCATTTGGAGATAC+TGG | - | chr4.3:12941422-12941441 | MS.gene058821:intron | 45.0% | |
| GTCGATGAACAATAGACGGT+TGG | - | chr4.3:12938316-12938335 | MS.gene058821:CDS | 45.0% | |
| TAGTGCTCCGGATCCTAAAT+GGG | - | chr4.3:12938924-12938943 | MS.gene058821:CDS | 45.0% | |
| TGGTCCAAATTGCTGAGGAA+CGG | + | chr4.3:12941033-12941052 | None:intergenic | 45.0% | |
| TTGTCCGTTCCTCAGCAATT+TGG | - | chr4.3:12941026-12941045 | MS.gene058821:CDS | 45.0% | |
| ! | ACTTACGCCCATTTAGGATC+CGG | + | chr4.3:12938934-12938953 | None:intergenic | 45.0% |
| ! | GATGCAATGATGGAAGTTGG+AGG | - | chr4.3:12940019-12940038 | MS.gene058821:intron | 45.0% |
| !! | TTGTGCTGATTGTAGTGCTC+CGG | - | chr4.3:12938912-12938931 | MS.gene058821:CDS | 45.0% |
| !!! | TGTTTTGAAGCTTGGCCAAC+AGG | - | chr4.3:12940817-12940836 | MS.gene058821:intron | 45.0% |
| GTAGTGCTCCGGATCCTAAA+TGG | - | chr4.3:12938923-12938942 | MS.gene058821:CDS | 50.0% | |
| TTGAAGCTTGGCCAACAGGT+TGG | - | chr4.3:12940821-12940840 | MS.gene058821:intron | 50.0% | |
| CGTTCTTCATGACTGGCGTC+TGG | + | chr4.3:12940106-12940125 | None:intergenic | 55.0% | |
| TGTGGGGTGCACAGAAGTCT+TGG | - | chr4.3:12939191-12939210 | MS.gene058821:CDS | 55.0% | |
| TCATGACTGGCGTCTGGTCC+TGG | + | chr4.3:12940100-12940119 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 12938314 | 12941622 | 12938314 | ID=MS.gene058821 |
| chr4.3 | mRNA | 12938314 | 12941622 | 12938314 | ID=MS.gene058821.t1;Parent=MS.gene058821 |
| chr4.3 | exon | 12941577 | 12941622 | 12941577 | ID=MS.gene058821.t1.exon1;Parent=MS.gene058821.t1 |
| chr4.3 | CDS | 12941577 | 12941622 | 12941577 | ID=cds.MS.gene058821.t1;Parent=MS.gene058821.t1 |
| chr4.3 | exon | 12940989 | 12941070 | 12940989 | ID=MS.gene058821.t1.exon2;Parent=MS.gene058821.t1 |
| chr4.3 | CDS | 12940989 | 12941070 | 12940989 | ID=cds.MS.gene058821.t1;Parent=MS.gene058821.t1 |
| chr4.3 | exon | 12940707 | 12940782 | 12940707 | ID=MS.gene058821.t1.exon3;Parent=MS.gene058821.t1 |
| chr4.3 | CDS | 12940707 | 12940782 | 12940707 | ID=cds.MS.gene058821.t1;Parent=MS.gene058821.t1 |
| chr4.3 | exon | 12939796 | 12939959 | 12939796 | ID=MS.gene058821.t1.exon4;Parent=MS.gene058821.t1 |
| chr4.3 | CDS | 12939796 | 12939959 | 12939796 | ID=cds.MS.gene058821.t1;Parent=MS.gene058821.t1 |
| chr4.3 | exon | 12939369 | 12939498 | 12939369 | ID=MS.gene058821.t1.exon5;Parent=MS.gene058821.t1 |
| chr4.3 | CDS | 12939369 | 12939498 | 12939369 | ID=cds.MS.gene058821.t1;Parent=MS.gene058821.t1 |
| chr4.3 | exon | 12939098 | 12939214 | 12939098 | ID=MS.gene058821.t1.exon6;Parent=MS.gene058821.t1 |
| chr4.3 | CDS | 12939098 | 12939214 | 12939098 | ID=cds.MS.gene058821.t1;Parent=MS.gene058821.t1 |
| chr4.3 | exon | 12938875 | 12938970 | 12938875 | ID=MS.gene058821.t1.exon7;Parent=MS.gene058821.t1 |
| chr4.3 | CDS | 12938875 | 12938970 | 12938875 | ID=cds.MS.gene058821.t1;Parent=MS.gene058821.t1 |
| chr4.3 | exon | 12938314 | 12938595 | 12938314 | ID=MS.gene058821.t1.exon8;Parent=MS.gene058821.t1 |
| chr4.3 | CDS | 12938314 | 12938595 | 12938314 | ID=cds.MS.gene058821.t1;Parent=MS.gene058821.t1 |
| Gene Sequence |
| Protein sequence |
