Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90429.t1 | XP_003595919.1 | 98.2 | 553 | 10 | 0 | 1 | 553 | 1 | 553 | 2.20E-303 | 1050.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90429.t1 | Q9LJE5 | 38.8 | 497 | 241 | 15 | 79 | 544 | 144 | 608 | 4.0e-72 | 273.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90429.t1 | G7IT77 | 98.2 | 553 | 10 | 0 | 1 | 553 | 1 | 553 | 1.6e-303 | 1050.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055505 | MS.gene90429 | 0.806488 | 8.03E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene68609 | MS.gene90429 | PPI |
MS.gene90429 | MS.gene00083 | PPI |
MS.gene67868 | MS.gene90429 | PPI |
MS.gene26804 | MS.gene90429 | PPI |
MS.gene030136 | MS.gene90429 | PPI |
MS.gene058307 | MS.gene90429 | PPI |
MS.gene55918 | MS.gene90429 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90429.t1 | MTR_2g063460 | 98.192 | 553 | 10 | 0 | 1 | 553 | 1 | 553 | 0.0 | 1127 |
MS.gene90429.t1 | MTR_2g063460 | 97.830 | 553 | 10 | 1 | 1 | 553 | 1 | 551 | 0.0 | 1118 |
MS.gene90429.t1 | MTR_2g032660 | 42.115 | 520 | 227 | 18 | 70 | 544 | 46 | 536 | 4.45e-104 | 328 |
MS.gene90429.t1 | MTR_4g123630 | 42.664 | 518 | 234 | 13 | 70 | 547 | 11 | 505 | 1.97e-103 | 325 |
MS.gene90429.t1 | MTR_4g005110 | 64.783 | 230 | 75 | 2 | 318 | 545 | 337 | 562 | 2.48e-96 | 306 |
MS.gene90429.t1 | MTR_8g088390 | 50.502 | 299 | 116 | 8 | 276 | 548 | 234 | 526 | 1.82e-85 | 277 |
MS.gene90429.t1 | MTR_8g088390 | 50.502 | 299 | 116 | 8 | 276 | 548 | 299 | 591 | 4.58e-85 | 278 |
MS.gene90429.t1 | MTR_2g005840 | 62.842 | 183 | 68 | 0 | 360 | 542 | 237 | 419 | 2.53e-83 | 268 |
MS.gene90429.t1 | MTR_2g005840 | 62.842 | 183 | 68 | 0 | 360 | 542 | 268 | 450 | 1.30e-82 | 267 |
MS.gene90429.t1 | MTR_7g085500 | 61.376 | 189 | 65 | 1 | 357 | 545 | 415 | 595 | 7.95e-79 | 261 |
MS.gene90429.t1 | MTR_6g032970 | 52.033 | 246 | 88 | 5 | 322 | 547 | 336 | 571 | 9.21e-78 | 258 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90429.t1 | AT1G79270 | 46.137 | 466 | 191 | 10 | 91 | 546 | 63 | 478 | 1.13e-122 | 370 |
MS.gene90429.t1 | AT1G79270 | 46.137 | 466 | 191 | 10 | 91 | 546 | 63 | 478 | 1.13e-122 | 370 |
MS.gene90429.t1 | AT1G79270 | 46.137 | 466 | 191 | 10 | 91 | 546 | 63 | 478 | 1.13e-122 | 370 |
MS.gene90429.t1 | AT1G79270 | 46.137 | 466 | 191 | 10 | 91 | 546 | 78 | 493 | 1.91e-122 | 370 |
MS.gene90429.t1 | AT1G48110 | 39.335 | 511 | 247 | 13 | 70 | 546 | 12 | 493 | 9.71e-99 | 313 |
MS.gene90429.t1 | AT1G48110 | 39.335 | 511 | 247 | 13 | 70 | 546 | 12 | 493 | 9.71e-99 | 313 |
MS.gene90429.t1 | AT3G13060 | 57.031 | 256 | 88 | 4 | 306 | 545 | 294 | 543 | 5.24e-93 | 297 |
MS.gene90429.t1 | AT3G13060 | 57.031 | 256 | 88 | 4 | 306 | 545 | 294 | 543 | 5.24e-93 | 297 |
MS.gene90429.t1 | AT3G13060 | 57.031 | 256 | 88 | 4 | 306 | 545 | 316 | 565 | 5.92e-93 | 297 |
MS.gene90429.t1 | AT3G13060 | 57.031 | 256 | 88 | 4 | 306 | 545 | 306 | 555 | 6.78e-93 | 297 |
MS.gene90429.t1 | AT3G17330 | 40.807 | 446 | 213 | 13 | 116 | 547 | 35 | 443 | 2.94e-90 | 289 |
MS.gene90429.t1 | AT3G17330 | 40.807 | 446 | 213 | 13 | 116 | 547 | 35 | 443 | 2.94e-90 | 289 |
MS.gene90429.t1 | AT3G17330 | 57.965 | 226 | 92 | 1 | 325 | 547 | 116 | 341 | 3.12e-90 | 286 |
MS.gene90429.t1 | AT3G13460 | 53.047 | 279 | 104 | 6 | 287 | 545 | 338 | 609 | 1.70e-89 | 289 |
MS.gene90429.t1 | AT3G13460 | 53.047 | 279 | 104 | 6 | 287 | 545 | 337 | 608 | 1.89e-89 | 289 |
MS.gene90429.t1 | AT3G13460 | 53.047 | 279 | 104 | 6 | 287 | 545 | 335 | 606 | 2.07e-89 | 289 |
MS.gene90429.t1 | AT1G09810 | 57.391 | 230 | 97 | 1 | 317 | 546 | 175 | 403 | 3.28e-86 | 275 |
MS.gene90429.t1 | AT1G09810 | 57.391 | 230 | 97 | 1 | 317 | 546 | 133 | 361 | 4.32e-86 | 273 |
MS.gene90429.t1 | AT1G09810 | 57.391 | 230 | 97 | 1 | 317 | 546 | 156 | 384 | 5.01e-86 | 274 |
MS.gene90429.t1 | AT1G55500 | 53.307 | 257 | 97 | 4 | 303 | 540 | 268 | 520 | 1.28e-85 | 276 |
MS.gene90429.t1 | AT1G55500 | 53.307 | 257 | 97 | 4 | 303 | 540 | 311 | 563 | 2.33e-85 | 276 |
MS.gene90429.t1 | AT5G61020 | 55.274 | 237 | 86 | 4 | 322 | 545 | 197 | 426 | 1.21e-84 | 271 |
MS.gene90429.t1 | AT5G61020 | 55.983 | 234 | 83 | 4 | 322 | 542 | 199 | 425 | 1.49e-84 | 271 |
MS.gene90429.t1 | AT3G03950 | 55.357 | 224 | 96 | 1 | 322 | 545 | 189 | 408 | 8.29e-82 | 262 |
MS.gene90429.t1 | AT3G03950 | 55.357 | 224 | 96 | 1 | 322 | 545 | 190 | 409 | 8.53e-82 | 262 |
MS.gene90429.t1 | AT3G03950 | 55.357 | 224 | 96 | 1 | 322 | 545 | 193 | 412 | 1.00e-81 | 262 |
MS.gene90429.t1 | AT1G27960 | 56.250 | 224 | 83 | 3 | 322 | 545 | 215 | 423 | 1.82e-79 | 257 |
MS.gene90429.t1 | AT1G27960 | 56.250 | 224 | 83 | 3 | 322 | 545 | 289 | 497 | 1.77e-78 | 257 |
MS.gene90429.t1 | AT5G58190 | 53.712 | 229 | 87 | 4 | 328 | 541 | 274 | 498 | 7.46e-77 | 252 |
MS.gene90429.t1 | AT5G58190 | 53.712 | 229 | 87 | 4 | 328 | 541 | 275 | 499 | 8.32e-77 | 252 |
MS.gene90429.t1 | AT3G13060 | 56.075 | 214 | 72 | 4 | 306 | 503 | 316 | 523 | 6.17e-72 | 240 |
MS.gene90429.t1 | AT3G13460 | 45.570 | 158 | 51 | 6 | 303 | 432 | 346 | 496 | 4.73e-29 | 121 |
MS.gene90429.t1 | AT3G13060 | 43.357 | 143 | 59 | 4 | 306 | 432 | 316 | 452 | 2.89e-25 | 109 |
MS.gene90429.t1 | AT1G27960 | 48.214 | 112 | 43 | 3 | 322 | 433 | 289 | 385 | 7.71e-20 | 92.8 |
MS.gene90429.t1 | AT4G11970 | 30.460 | 174 | 84 | 6 | 355 | 509 | 44 | 199 | 2.14e-13 | 72.4 |
MS.gene90429.t1 | AT4G11970 | 30.460 | 174 | 84 | 6 | 355 | 509 | 44 | 199 | 2.16e-13 | 72.4 |
MS.gene90429.t1 | AT4G11970 | 30.460 | 174 | 84 | 6 | 355 | 509 | 44 | 199 | 2.43e-13 | 72.0 |
MS.gene90429.t1 | AT4G11970 | 30.460 | 174 | 84 | 6 | 355 | 509 | 44 | 199 | 4.83e-13 | 71.6 |
MS.gene90429.t1 | AT4G11970 | 30.460 | 174 | 84 | 6 | 355 | 509 | 44 | 199 | 4.83e-13 | 71.6 |
Find 125 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTACTTGTTGCTTTCATATT+AGG | 0.139929 | 2.1:+32947766 | None:intergenic |
TATTCTGCTGGTAGTTATTA+TGG | 0.145347 | 2.1:-32949526 | MS.gene90429:CDS |
TCAACAAAAGTATGGATTTC+TGG | 0.157531 | 2.1:-32947187 | MS.gene90429:CDS |
GAAAAGTGCATGATCATATT+TGG | 0.231336 | 2.1:+32947552 | None:intergenic |
TTAAACTCTGGAGGTAATTC+TGG | 0.231621 | 2.1:-32947640 | MS.gene90429:CDS |
GTTACCTTGTTTGCTTGTTT+TGG | 0.232110 | 2.1:+32948138 | None:intergenic |
GAGGCTCGACAATGCATTTC+AGG | 0.241866 | 2.1:-32947446 | MS.gene90429:CDS |
CCTGGCTATATTTCACCTTA+TGG | 0.275162 | 2.1:-32948405 | MS.gene90429:CDS |
GTGTCTCTACTATTTGTTAC+AGG | 0.280235 | 2.1:+32947059 | None:intergenic |
ATGTTGATCTGTCCTGATTT+TGG | 0.281400 | 2.1:+32947594 | None:intergenic |
AGTGGATTTCAACAAAAGTA+TGG | 0.322061 | 2.1:-32947195 | MS.gene90429:CDS |
TCATATTTGGTTGGAAAATC+AGG | 0.322709 | 2.1:+32947565 | None:intergenic |
CGATCTACCACTCGGTTTAC+TGG | 0.323936 | 2.1:+32948299 | None:intergenic |
TGTATCGAGAACATCGATAT+TGG | 0.347303 | 2.1:-32946872 | MS.gene90429:CDS |
ATTTCTGGCAGCAAGATAAA+TGG | 0.351407 | 2.1:-32947172 | MS.gene90429:CDS |
ATATGCCGTAGCTGAGGATT+TGG | 0.367053 | 2.1:+32947107 | None:intergenic |
AGGGAATCGTTATAATGAAT+TGG | 0.374688 | 2.1:-32948322 | MS.gene90429:CDS |
CAGTATCAGGTTTACCCTCC+TGG | 0.392158 | 2.1:-32948456 | MS.gene90429:CDS |
TTTATAATGTGCCATTTGAC+AGG | 0.415396 | 2.1:+32947137 | None:intergenic |
TCCGTCTTTCAACAACCAAT+TGG | 0.421822 | 2.1:-32948432 | MS.gene90429:CDS |
CTCTTGCATGACCTTCTGAC+GGG | 0.425352 | 2.1:+32946828 | None:intergenic |
TGGTGTCGATGTCCAGTATC+AGG | 0.429764 | 2.1:-32948469 | MS.gene90429:CDS |
TAGGTCATGCAAGCAGATAA+TGG | 0.430474 | 2.1:-32948558 | MS.gene90429:CDS |
TCGAGCCTCTTATTGCCATT+AGG | 0.430781 | 2.1:+32947460 | None:intergenic |
GCGACGGGAAAAGAACCCTT+TGG | 0.439928 | 2.1:+32947844 | None:intergenic |
AGATCATGTGTATCATCAAT+AGG | 0.445206 | 2.1:-32949619 | MS.gene90429:CDS |
ATGGAGAACAGGACCAGAAA+TGG | 0.448479 | 2.1:+32947879 | None:intergenic |
AGAGCATCAAGTACGATGTA+TGG | 0.449332 | 2.1:-32947492 | MS.gene90429:CDS |
CAGGAGGGTAAACCTGATAC+TGG | 0.449509 | 2.1:+32948457 | None:intergenic |
TGTGGAGTAGCCGAGATGAT+TGG | 0.450864 | 2.1:-32947221 | MS.gene90429:CDS |
TATTATGGATATTACTATCC+AGG | 0.456293 | 2.1:-32949511 | MS.gene90429:intron |
GTTGAAGAAACATCTAATAT+TGG | 0.457075 | 2.1:+32948180 | None:intergenic |
TCATCAATAGGAGATGCTTC+TGG | 0.457910 | 2.1:-32949607 | MS.gene90429:CDS |
CAGAATGTTGCTTATTCTGC+TGG | 0.462148 | 2.1:-32949538 | MS.gene90429:CDS |
TATGTTAAGGTTTCTTCAAA+GGG | 0.467717 | 2.1:-32949667 | MS.gene90429:intron |
TCAATGGTGACACCAAAATC+AGG | 0.467791 | 2.1:-32947606 | MS.gene90429:CDS |
TTATGTCGGCGCTGATGCTA+TGG | 0.468389 | 2.1:-32949186 | MS.gene90429:CDS |
TCTCTTGCATGACCTTCTGA+CGG | 0.475313 | 2.1:+32946827 | None:intergenic |
CAACAACCAATTGGATCCCC+TGG | 0.475726 | 2.1:-32948423 | MS.gene90429:CDS |
ATTGCATCTGAATGGAGAAC+AGG | 0.476903 | 2.1:+32947868 | None:intergenic |
CAACATTCTGATCAGTGGAT+TGG | 0.479321 | 2.1:+32949551 | None:intergenic |
TACCGAAAAGAAAAGGAATA+CGG | 0.480275 | 2.1:+32947384 | None:intergenic |
CCATAAGGTGAAATATAGCC+AGG | 0.480961 | 2.1:+32948405 | None:intergenic |
GAGTAGCCAGTCTGATATCC+TGG | 0.482425 | 2.1:+32948516 | None:intergenic |
CCTAGAACAGTTAATGCAAA+AGG | 0.482609 | 2.1:-32947667 | MS.gene90429:CDS |
GAATCCCATGAGTATGTTGA+TGG | 0.482741 | 2.1:+32948372 | None:intergenic |
GGTTGTTGAAAGACGGAACC+AGG | 0.487017 | 2.1:+32948438 | None:intergenic |
CCTTTGGCATTGCATCTGAA+TGG | 0.488787 | 2.1:+32947860 | None:intergenic |
TTATGTTAAGGTTTCTTCAA+AGG | 0.495686 | 2.1:-32949668 | MS.gene90429:intron |
TATGGAGAGCAAGAAAATCA+AGG | 0.500681 | 2.1:-32949212 | MS.gene90429:CDS |
ACGGATATTTCCCTGTCAAA+TGG | 0.501338 | 2.1:-32947148 | MS.gene90429:CDS |
TACTTTCCTGTGAACACACC+TGG | 0.502118 | 2.1:-32948489 | MS.gene90429:CDS |
GATAGCATACCGAAAAGAAA+AGG | 0.504322 | 2.1:+32947377 | None:intergenic |
TATGTAGAAAACTTTGCGAC+GGG | 0.505982 | 2.1:+32947829 | None:intergenic |
GCAAAAGGTACTTTAAACTC+TGG | 0.507406 | 2.1:-32947652 | MS.gene90429:CDS |
TCTGGAGATAAGAGTGTCAA+TGG | 0.513122 | 2.1:-32947622 | MS.gene90429:CDS |
TACTTCCATCAACATACTCA+TGG | 0.517546 | 2.1:-32948377 | MS.gene90429:CDS |
CACATGCAAGCTTACCATGT+TGG | 0.518787 | 2.1:+32949839 | None:intergenic |
TCGCAGAGTCGTACTGGCAG+TGG | 0.526655 | 2.1:-32948267 | MS.gene90429:CDS |
AGTGCATGATCATATTTGGT+TGG | 0.527014 | 2.1:+32947556 | None:intergenic |
ATATAGCCAGGGGATCCAAT+TGG | 0.527493 | 2.1:+32948417 | None:intergenic |
CCCTTGTGCTACATCTTGTG+TGG | 0.528879 | 2.1:+32948341 | None:intergenic |
GTACACCTAATGGCAATAAG+AGG | 0.531549 | 2.1:-32947465 | MS.gene90429:CDS |
TCTTATGTCTATCTCATGCC+AGG | 0.534138 | 2.1:-32948534 | MS.gene90429:CDS |
GATGGAAGTAACTCACCATA+AGG | 0.536031 | 2.1:+32948390 | None:intergenic |
TCCAATTGGTTGTTGAAAGA+CGG | 0.536670 | 2.1:+32948431 | None:intergenic |
GTATGGGCGAGTACACCTAA+TGG | 0.536841 | 2.1:-32947475 | MS.gene90429:CDS |
TCACTTAATGAGCAGAATCA+AGG | 0.540048 | 2.1:-32947691 | MS.gene90429:CDS |
TCGACACCAGGTGTGTTCAC+AGG | 0.547002 | 2.1:+32948483 | None:intergenic |
CCAGCCAAAACAAGCAAACA+AGG | 0.547719 | 2.1:-32948142 | MS.gene90429:intron |
CCATTCAGATGCAATGCCAA+AGG | 0.548568 | 2.1:-32947860 | MS.gene90429:CDS |
CATTCAGATGCAATGCCAAA+GGG | 0.552432 | 2.1:-32947859 | MS.gene90429:CDS |
CAGAATCGAATGGAAGAGAA+AGG | 0.555397 | 2.1:-32947418 | MS.gene90429:CDS |
CAAACCTGTACATTGGTATG+TGG | 0.555627 | 2.1:+32946784 | None:intergenic |
AAGGTTTCTTCAAAGGGTGG+TGG | 0.558132 | 2.1:-32949661 | MS.gene90429:CDS |
GAGCATCAAGTACGATGTAT+GGG | 0.559060 | 2.1:-32947491 | MS.gene90429:CDS |
TATGCCACATACCAATGTAC+AGG | 0.568570 | 2.1:-32946788 | None:intergenic |
GAGCAACTCATCAGAAGTGA+AGG | 0.569571 | 2.1:-32948211 | MS.gene90429:CDS |
CTCAGTACTAACCCATCCCT+TGG | 0.572036 | 2.1:+32947744 | None:intergenic |
TTATAATGTGCCATTTGACA+GGG | 0.573430 | 2.1:+32947138 | None:intergenic |
AGCAACAAGTACCAAGGGAT+GGG | 0.576647 | 2.1:-32947755 | MS.gene90429:CDS |
CTCATGCCAGGATATCAGAC+TGG | 0.577228 | 2.1:-32948522 | MS.gene90429:CDS |
GAAGAAACATCTAATATTGG+TGG | 0.577898 | 2.1:+32948183 | None:intergenic |
ACCGAAAAGAAAAGGAATAC+GGG | 0.578211 | 2.1:+32947385 | None:intergenic |
GTTAAGGTTTCTTCAAAGGG+TGG | 0.579681 | 2.1:-32949664 | MS.gene90429:intron |
GTATGTAGAAAACTTTGCGA+CGG | 0.581650 | 2.1:+32947828 | None:intergenic |
GCTTGTGATCATTATTCTCG+AGG | 0.582868 | 2.1:+32947081 | None:intergenic |
ATGAAAGCAACAAGTACCAA+GGG | 0.583635 | 2.1:-32947760 | MS.gene90429:CDS |
AGCCGAGATGATTGGACGAG+TGG | 0.583728 | 2.1:-32947213 | MS.gene90429:CDS |
ACTTCCATCAACATACTCAT+GGG | 0.589217 | 2.1:-32948376 | MS.gene90429:CDS |
ATCCACTCGTCCAATCATCT+CGG | 0.591466 | 2.1:+32947211 | None:intergenic |
ACATACAATCAAGGTAAGAG+TGG | 0.591747 | 2.1:-32947811 | MS.gene90429:CDS |
AAGCAACAAGTACCAAGGGA+TGG | 0.592367 | 2.1:-32947756 | MS.gene90429:CDS |
TGAGTTCAGGTCAACGCTAG+TGG | 0.593166 | 2.1:-32947251 | MS.gene90429:intron |
ATAAGCAACATTCTGATCAG+TGG | 0.595793 | 2.1:+32949546 | None:intergenic |
ATATTCCAAATCCTCAGCTA+CGG | 0.598835 | 2.1:-32947112 | MS.gene90429:CDS |
GTAAAATCAAACCTGTACAT+TGG | 0.599665 | 2.1:+32946777 | None:intergenic |
GAAAATCAAGGATATTATGT+CGG | 0.602073 | 2.1:-32949200 | MS.gene90429:CDS |
TGTACATTGGTATGTGGCAT+AGG | 0.603452 | 2.1:+32946790 | None:intergenic |
TTGAGCATTTCAATACCTTG+CGG | 0.609987 | 2.1:+32946910 | None:intergenic |
AGAATGATTACAGGTTATGG+TGG | 0.612198 | 2.1:-32949239 | MS.gene90429:intron |
AAAGGTACTTTAAACTCTGG+AGG | 0.617094 | 2.1:-32947649 | MS.gene90429:CDS |
TGAGTTGCTCACATTAGATG+AGG | 0.617233 | 2.1:+32948224 | None:intergenic |
TGATACTGGACATCGACACC+AGG | 0.618053 | 2.1:+32948471 | None:intergenic |
ATTTGGTTGGAAAATCAGGA+AGG | 0.619406 | 2.1:+32947569 | None:intergenic |
CATAAGGTGAAATATAGCCA+GGG | 0.620198 | 2.1:+32948406 | None:intergenic |
ACACATGATCTTGCATCAGA+TGG | 0.625382 | 2.1:+32949631 | None:intergenic |
TATGAAAGCAACAAGTACCA+AGG | 0.634095 | 2.1:-32947761 | MS.gene90429:CDS |
TCAGGATGCACAGAATCGAA+TGG | 0.637168 | 2.1:-32947428 | MS.gene90429:CDS |
AGGATAATATGCCGTAGCTG+AGG | 0.638343 | 2.1:+32947101 | None:intergenic |
CATACAATCAAGGTAAGAGT+GGG | 0.638675 | 2.1:-32947810 | MS.gene90429:CDS |
ATGAATAAGAAGAAGCTGCA+TGG | 0.646230 | 2.1:-32949891 | MS.gene90429:CDS |
GAGTTGCTCACATTAGATGA+GGG | 0.650819 | 2.1:+32948225 | None:intergenic |
TGGCAGCAAGATAAATGGAA+CGG | 0.653548 | 2.1:-32947167 | MS.gene90429:CDS |
AGCAACTCATCAGAAGTGAA+GGG | 0.655536 | 2.1:-32948210 | MS.gene90429:CDS |
AAATAGTAGAGACACTCAAG+AGG | 0.657180 | 2.1:-32947051 | MS.gene90429:intron |
GAAGCTGAAACTCAGAAACA+AGG | 0.666505 | 2.1:-32947722 | MS.gene90429:CDS |
ACCACACAAGATGTAGCACA+AGG | 0.668664 | 2.1:-32948342 | MS.gene90429:CDS |
GTTGAAAGACGGAACCAGGA+GGG | 0.679018 | 2.1:+32948442 | None:intergenic |
GAAAAGATCGATCTACCACT+CGG | 0.689012 | 2.1:+32948291 | None:intergenic |
ATAAGGTGAAATATAGCCAG+GGG | 0.699657 | 2.1:+32948407 | None:intergenic |
TGAACATAATAATTCCAACA+TGG | 0.712248 | 2.1:-32949853 | MS.gene90429:intron |
TGTTGAAAGACGGAACCAGG+AGG | 0.716372 | 2.1:+32948441 | None:intergenic |
CCACACAAGATGTAGCACAA+GGG | 0.750655 | 2.1:-32948341 | MS.gene90429:CDS |
GAATTGGCCAGTAAACCGAG+TGG | 0.774424 | 2.1:-32948306 | MS.gene90429:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAAAATAACATGTTAATAAA+AGG | - | chr2.1:32948046-32948065 | MS.gene90429:intron | 15.0% |
!!! | AATTTTTGTTGGTTTTATTT+AGG | - | chr2.1:32948266-32948285 | MS.gene90429:CDS | 15.0% |
!!! | ATGTTTTCTTATTGTATTTT+TGG | - | chr2.1:32947140-32947159 | MS.gene90429:CDS | 15.0% |
!!! | GTAAATATCTAAATTTTTGT+TGG | - | chr2.1:32948255-32948274 | MS.gene90429:CDS | 15.0% |
!!! | TTGAATTCTGAAATAAATTT+GGG | - | chr2.1:32948005-32948024 | MS.gene90429:intron | 15.0% |
!!! | TTTCTCTTTCTAAAATTATA+AGG | + | chr2.1:32948834-32948853 | None:intergenic | 15.0% |
!!! | TTTGAATTCTGAAATAAATT+TGG | - | chr2.1:32948004-32948023 | MS.gene90429:intron | 15.0% |
!! | AAACAATAGTTAAAACAGAA+CGG | + | chr2.1:32948741-32948760 | None:intergenic | 20.0% |
!! | AGATTATTCTAAATAGTTTG+TGG | - | chr2.1:32948927-32948946 | MS.gene90429:intron | 20.0% |
!!! | ATTTGTTGTATGTTATGTTA+AGG | - | chr2.1:32947163-32947182 | MS.gene90429:CDS | 20.0% |
!!! | ATTTTAGAAAGAGAAATAAG+TGG | - | chr2.1:32948838-32948857 | MS.gene90429:intron | 20.0% |
!!! | TCATGATAATTGTGTTATTA+TGG | - | chr2.1:32947727-32947746 | MS.gene90429:CDS | 20.0% |
!!! | TGTTCTTCTTGTTTATTTTT+TGG | - | chr2.1:32946825-32946844 | MS.gene90429:CDS | 20.0% |
!!! | TTTATGTTTTTCCTTTCTTA+CGG | - | chr2.1:32947580-32947599 | MS.gene90429:CDS | 20.0% |
! | AACTATATATTGAACTGTTG+GGG | - | chr2.1:32948861-32948880 | MS.gene90429:intron | 25.0% |
! | AAGATACAGAAGAAATAACT+AGG | + | chr2.1:32949865-32949884 | None:intergenic | 25.0% |
! | ATGAGCAAATAAAACACAAA+CGG | + | chr2.1:32949525-32949544 | None:intergenic | 25.0% |
! | GAAAATCAAGGATATTATGT+CGG | - | chr2.1:32947643-32947662 | MS.gene90429:CDS | 25.0% |
! | GAACTATATATTGAACTGTT+GGG | - | chr2.1:32948860-32948879 | MS.gene90429:intron | 25.0% |
! | GTTGAAGAAACATCTAATAT+TGG | + | chr2.1:32948666-32948685 | None:intergenic | 25.0% |
! | TAACATTCAAGGAAAAAATG+TGG | - | chr2.1:32948148-32948167 | MS.gene90429:CDS | 25.0% |
! | TAAGCATATATCTTCAGAAA+GGG | - | chr2.1:32947930-32947949 | MS.gene90429:intron | 25.0% |
! | TATGTTAAGGTTTCTTCAAA+GGG | - | chr2.1:32947176-32947195 | MS.gene90429:CDS | 25.0% |
! | TATTATGGATATTACTATCC+AGG | - | chr2.1:32947332-32947351 | MS.gene90429:intron | 25.0% |
! | TATTGCATTACACATGAAAA+TGG | - | chr2.1:32948078-32948097 | MS.gene90429:intron | 25.0% |
! | TCAGATTCAAGTATTTATAC+AGG | + | chr2.1:32947815-32947834 | None:intergenic | 25.0% |
! | TGAACATAATAATTCCAACA+TGG | - | chr2.1:32946990-32947009 | MS.gene90429:intron | 25.0% |
! | TTAAGCATATATCTTCAGAA+AGG | - | chr2.1:32947929-32947948 | MS.gene90429:intron | 25.0% |
! | TTATGTTAAGGTTTCTTCAA+AGG | - | chr2.1:32947175-32947194 | MS.gene90429:CDS | 25.0% |
!! | AAGTTTTCTACATACAATCA+AGG | - | chr2.1:32949023-32949042 | MS.gene90429:intron | 25.0% |
!!! | ATTAGGAAAGTTGTTTTGAT+AGG | + | chr2.1:32949063-32949082 | None:intergenic | 25.0% |
!!! | ATTTTTTCCTTGAATGTTAC+AGG | + | chr2.1:32948147-32948166 | None:intergenic | 25.0% |
!!! | TTAGGAAAGTTGTTTTGATA+GGG | + | chr2.1:32949062-32949081 | None:intergenic | 25.0% |
!!! | TTCTGAAATAAATTTGGGAT+TGG | - | chr2.1:32948010-32948029 | MS.gene90429:intron | 25.0% |
!!! | TTTTGATAATTGTTGAGTTC+AGG | - | chr2.1:32949579-32949598 | MS.gene90429:CDS | 25.0% |
AGATCATGTGTATCATCAAT+AGG | - | chr2.1:32947224-32947243 | MS.gene90429:CDS | 30.0% | |
AGGGAATCGTTATAATGAAT+TGG | - | chr2.1:32948521-32948540 | MS.gene90429:CDS | 30.0% | |
GAAGAAACATCTAATATTGG+TGG | + | chr2.1:32948663-32948682 | None:intergenic | 30.0% | |
GGAACTATATATTGAACTGT+TGG | - | chr2.1:32948859-32948878 | MS.gene90429:intron | 30.0% | |
TAATCATTCTACCGTAAGAA+AGG | + | chr2.1:32947594-32947613 | None:intergenic | 30.0% | |
TACCGAAAAGAAAAGGAATA+CGG | + | chr2.1:32949462-32949481 | None:intergenic | 30.0% | |
TATTCTGCTGGTAGTTATTA+TGG | - | chr2.1:32947317-32947336 | MS.gene90429:intron | 30.0% | |
TCATATTTGGTTGGAAAATC+AGG | + | chr2.1:32949281-32949300 | None:intergenic | 30.0% | |
TGAGCAAATAAAACACAAAC+GGG | + | chr2.1:32949524-32949543 | None:intergenic | 30.0% | |
! | AGTGGATTTCAACAAAAGTA+TGG | - | chr2.1:32949648-32949667 | MS.gene90429:CDS | 30.0% |
! | ATTGATAACACTGACGAATA+GGG | + | chr2.1:32947377-32947396 | None:intergenic | 30.0% |
! | CTGATAATTTGCATTGCATT+AGG | - | chr2.1:32947831-32947850 | MS.gene90429:CDS | 30.0% |
! | GAAAAGTGCATGATCATATT+TGG | + | chr2.1:32949294-32949313 | None:intergenic | 30.0% |
! | TCAACAAAAGTATGGATTTC+TGG | - | chr2.1:32949656-32949675 | MS.gene90429:CDS | 30.0% |
!! | AATAGTTTGTGGTGTTTTTC+AGG | - | chr2.1:32948938-32948957 | MS.gene90429:intron | 30.0% |
!! | GTACTTGTTGCTTTCATATT+AGG | + | chr2.1:32949080-32949099 | None:intergenic | 30.0% |
!! | TTATAATGTGCCATTTGACA+GGG | + | chr2.1:32949708-32949727 | None:intergenic | 30.0% |
!! | TTTATAATGTGCCATTTGAC+AGG | + | chr2.1:32949709-32949728 | None:intergenic | 30.0% |
!!! | AATTTGGGATTGGCTAATTT+TGG | - | chr2.1:32948020-32948039 | MS.gene90429:intron | 30.0% |
!!! | TAGGAAAGTTGTTTTGATAG+GGG | + | chr2.1:32949061-32949080 | None:intergenic | 30.0% |
AAATAGTAGAGACACTCAAG+AGG | - | chr2.1:32949792-32949811 | MS.gene90429:intron | 35.0% | |
AATTGACCAGATATGCAACA+AGG | + | chr2.1:32947774-32947793 | None:intergenic | 35.0% | |
ACATACAATCAAGGTAAGAG+TGG | - | chr2.1:32949032-32949051 | MS.gene90429:intron | 35.0% | |
ACCGAAAAGAAAAGGAATAC+GGG | + | chr2.1:32949461-32949480 | None:intergenic | 35.0% | |
ACTTCCATCAACATACTCAT+GGG | - | chr2.1:32948467-32948486 | MS.gene90429:CDS | 35.0% | |
AGAATGATTACAGGTTATGG+TGG | - | chr2.1:32947604-32947623 | MS.gene90429:CDS | 35.0% | |
AGTGCATGATCATATTTGGT+TGG | + | chr2.1:32949290-32949309 | None:intergenic | 35.0% | |
ATAAGCAACATTCTGATCAG+TGG | + | chr2.1:32947300-32947319 | None:intergenic | 35.0% | |
ATAAGGTGAAATATAGCCAG+GGG | + | chr2.1:32948439-32948458 | None:intergenic | 35.0% | |
ATATTCCAAATCCTCAGCTA+CGG | - | chr2.1:32949731-32949750 | MS.gene90429:intron | 35.0% | |
ATGAAAGCAACAAGTACCAA+GGG | - | chr2.1:32949083-32949102 | MS.gene90429:intron | 35.0% | |
ATGAATAAGAAGAAGCTGCA+TGG | - | chr2.1:32946952-32946971 | MS.gene90429:intron | 35.0% | |
ATGGCTGCTGAATTGAAAAA+AGG | - | chr2.1:32946789-32946808 | MS.gene90429:CDS | 35.0% | |
ATTTGGTTGGAAAATCAGGA+AGG | + | chr2.1:32949277-32949296 | None:intergenic | 35.0% | |
CAATAGTTAAAACAGAACGG+AGG | + | chr2.1:32948738-32948757 | None:intergenic | 35.0% | |
CATAAGGTGAAATATAGCCA+GGG | + | chr2.1:32948440-32948459 | None:intergenic | 35.0% | |
CATACAATCAAGGTAAGAGT+GGG | - | chr2.1:32949033-32949052 | MS.gene90429:intron | 35.0% | |
CCTAGAACAGTTAATGCAAA+AGG | - | chr2.1:32949176-32949195 | MS.gene90429:CDS | 35.0% | |
CTCACAACAACATGAAACAA+TGG | + | chr2.1:32947877-32947896 | None:intergenic | 35.0% | |
GATAGCATACCGAAAAGAAA+AGG | + | chr2.1:32949469-32949488 | None:intergenic | 35.0% | |
GGTAGAATGATTACAGGTTA+TGG | - | chr2.1:32947601-32947620 | MS.gene90429:CDS | 35.0% | |
GTATGTAGAAAACTTTGCGA+CGG | + | chr2.1:32949018-32949037 | None:intergenic | 35.0% | |
TACTTCCATCAACATACTCA+TGG | - | chr2.1:32948466-32948485 | MS.gene90429:CDS | 35.0% | |
TATGAAAGCAACAAGTACCA+AGG | - | chr2.1:32949082-32949101 | MS.gene90429:intron | 35.0% | |
TATGGAGAGCAAGAAAATCA+AGG | - | chr2.1:32947631-32947650 | MS.gene90429:CDS | 35.0% | |
TATGTAGAAAACTTTGCGAC+GGG | + | chr2.1:32949017-32949036 | None:intergenic | 35.0% | |
TCACTTAATGAGCAGAATCA+AGG | - | chr2.1:32949152-32949171 | MS.gene90429:intron | 35.0% | |
TCCAATTGGTTGTTGAAAGA+CGG | + | chr2.1:32948415-32948434 | None:intergenic | 35.0% | |
TCTTACGGTAGAATGATTAC+AGG | - | chr2.1:32947595-32947614 | MS.gene90429:CDS | 35.0% | |
TGTATCGAGAACATCGATAT+TGG | - | chr2.1:32949971-32949990 | MS.gene90429:intron | 35.0% | |
TTAGACAGCGACAAATAAAC+AGG | + | chr2.1:32948769-32948788 | None:intergenic | 35.0% | |
TTGAGCATTTCAATACCTTG+CGG | + | chr2.1:32949936-32949955 | None:intergenic | 35.0% | |
! | AAGTTTCTTGAGCTGGTTTA+TGG | - | chr2.1:32947696-32947715 | MS.gene90429:CDS | 35.0% |
! | ATGTTGATCTGTCCTGATTT+TGG | + | chr2.1:32949252-32949271 | None:intergenic | 35.0% |
! | CCTTTTGCATTAACTGTTCT+AGG | + | chr2.1:32949179-32949198 | None:intergenic | 35.0% |
! | GATTGATAACACTGACGAAT+AGG | + | chr2.1:32947378-32947397 | None:intergenic | 35.0% |
! | GTGTCTCTACTATTTGTTAC+AGG | + | chr2.1:32949787-32949806 | None:intergenic | 35.0% |
! | TCCCGTATTCCTTTTCTTTT+CGG | - | chr2.1:32949457-32949476 | MS.gene90429:intron | 35.0% |
! | TTAAACTCTGGAGGTAATTC+TGG | - | chr2.1:32949203-32949222 | MS.gene90429:CDS | 35.0% |
!! | AAAGGTACTTTAAACTCTGG+AGG | - | chr2.1:32949194-32949213 | MS.gene90429:CDS | 35.0% |
!! | ATTTCTGGCAGCAAGATAAA+TGG | - | chr2.1:32949671-32949690 | MS.gene90429:intron | 35.0% |
!! | GCAAAAGGTACTTTAAACTC+TGG | - | chr2.1:32949191-32949210 | MS.gene90429:CDS | 35.0% |
!! | GTTACCTTGTTTGCTTGTTT+TGG | + | chr2.1:32948708-32948727 | None:intergenic | 35.0% |
!!! | ACAGGTTATGGTGGATTTTA+TGG | - | chr2.1:32947613-32947632 | MS.gene90429:CDS | 35.0% |
!!! | GCTTCTGGTAGTTTTAAAGA+AGG | - | chr2.1:32947251-32947270 | MS.gene90429:intron | 35.0% |
AAAACAGAACGGAGGAAGTA+AGG | + | chr2.1:32948730-32948749 | None:intergenic | 40.0% | |
AACCAGCTCAAGAAACTTAC+AGG | + | chr2.1:32947694-32947713 | None:intergenic | 40.0% | |
ACACATGATCTTGCATCAGA+TGG | + | chr2.1:32947215-32947234 | None:intergenic | 40.0% | |
ACGGATATTTCCCTGTCAAA+TGG | - | chr2.1:32949695-32949714 | MS.gene90429:intron | 40.0% | |
AGCAACTCATCAGAAGTGAA+GGG | - | chr2.1:32948633-32948652 | MS.gene90429:intron | 40.0% | |
ATCCTGTAAGTTTCTTGAGC+TGG | - | chr2.1:32947689-32947708 | MS.gene90429:CDS | 40.0% | |
ATTGCATCTGAATGGAGAAC+AGG | + | chr2.1:32948978-32948997 | None:intergenic | 40.0% | |
CAACATTCTGATCAGTGGAT+TGG | + | chr2.1:32947295-32947314 | None:intergenic | 40.0% | |
CAGAATCGAATGGAAGAGAA+AGG | - | chr2.1:32949425-32949444 | MS.gene90429:intron | 40.0% | |
CATTCAGATGCAATGCCAAA+GGG | - | chr2.1:32948984-32949003 | MS.gene90429:intron | 40.0% | |
CCATAAGGTGAAATATAGCC+AGG | + | chr2.1:32948441-32948460 | None:intergenic | 40.0% | |
CCTGGCTATATTTCACCTTA+TGG | - | chr2.1:32948438-32948457 | MS.gene90429:CDS | 40.0% | |
CTCTGTTCTGTTAAGACCTA+CGG | - | chr2.1:32949498-32949517 | MS.gene90429:intron | 40.0% | |
CTGATGTCCTGTAACATTCA+AGG | - | chr2.1:32948137-32948156 | MS.gene90429:intron | 40.0% | |
GAAAAGATCGATCTACCACT+CGG | + | chr2.1:32948555-32948574 | None:intergenic | 40.0% | |
GAAGCTGAAACTCAGAAACA+AGG | - | chr2.1:32949121-32949140 | MS.gene90429:intron | 40.0% | |
GAATCCCATGAGTATGTTGA+TGG | + | chr2.1:32948474-32948493 | None:intergenic | 40.0% | |
GAGCATCAAGTACGATGTAT+GGG | - | chr2.1:32949352-32949371 | MS.gene90429:intron | 40.0% | |
GAGTTGCTCACATTAGATGA+GGG | + | chr2.1:32948621-32948640 | None:intergenic | 40.0% | |
GATGGAAGTAACTCACCATA+AGG | + | chr2.1:32948456-32948475 | None:intergenic | 40.0% | |
GCTTGTGATCATTATTCTCG+AGG | + | chr2.1:32949765-32949784 | None:intergenic | 40.0% | |
GTACACCTAATGGCAATAAG+AGG | - | chr2.1:32949378-32949397 | MS.gene90429:intron | 40.0% | |
GTTAAGGTTTCTTCAAAGGG+TGG | - | chr2.1:32947179-32947198 | MS.gene90429:CDS | 40.0% | |
TACCTTGCGGAAAATGAATC+TGG | + | chr2.1:32949923-32949942 | None:intergenic | 40.0% | |
TAGGTCATGCAAGCAGATAA+TGG | - | chr2.1:32948285-32948304 | MS.gene90429:CDS | 40.0% | |
TCAATGGTGACACCAAAATC+AGG | - | chr2.1:32949237-32949256 | MS.gene90429:intron | 40.0% | |
TCATCAATAGGAGATGCTTC+TGG | - | chr2.1:32947236-32947255 | MS.gene90429:CDS | 40.0% | |
TCCGTCTTTCAACAACCAAT+TGG | - | chr2.1:32948411-32948430 | MS.gene90429:CDS | 40.0% | |
TCTTATGTCTATCTCATGCC+AGG | - | chr2.1:32948309-32948328 | MS.gene90429:CDS | 40.0% | |
TGAGTTGCTCACATTAGATG+AGG | + | chr2.1:32948622-32948641 | None:intergenic | 40.0% | |
TGGCAGCAAGATAAATGGAA+CGG | - | chr2.1:32949676-32949695 | MS.gene90429:intron | 40.0% | |
TGTACATTGGTATGTGGCAT+AGG | + | chr2.1:32950056-32950075 | None:intergenic | 40.0% | |
TTTGTTCAGATTCCGCTATG+CGG | - | chr2.1:32947500-32947519 | MS.gene90429:CDS | 40.0% | |
! | AACGCTAGTGGTCAATTTTG+TGG | - | chr2.1:32949604-32949623 | MS.gene90429:CDS | 40.0% |
! | AGAGCATCAAGTACGATGTA+TGG | - | chr2.1:32949351-32949370 | MS.gene90429:intron | 40.0% |
! | CAGAATGTTGCTTATTCTGC+TGG | - | chr2.1:32947305-32947324 | MS.gene90429:intron | 40.0% |
! | TAGTTGCCTTGTTGCATATC+TGG | - | chr2.1:32947765-32947784 | MS.gene90429:CDS | 40.0% |
! | TTCCAGATTCATTTTCCGCA+AGG | - | chr2.1:32949918-32949937 | MS.gene90429:intron | 40.0% |
! | TTTTTACGAAACCCGTCAGA+AGG | - | chr2.1:32950004-32950023 | MS.gene90429:intron | 40.0% |
!! | TCTGGAGATAAGAGTGTCAA+TGG | - | chr2.1:32949221-32949240 | MS.gene90429:CDS | 40.0% |
!!! | GTTTTTCAGGCATCCATTTC+TGG | - | chr2.1:32948951-32948970 | MS.gene90429:intron | 40.0% |
AAGCAACAAGTACCAAGGGA+TGG | - | chr2.1:32949087-32949106 | MS.gene90429:intron | 45.0% | |
AAGGTTTCTTCAAAGGGTGG+TGG | - | chr2.1:32947182-32947201 | MS.gene90429:CDS | 45.0% | |
ACATTAACGCTACCGCATAG+CGG | + | chr2.1:32947515-32947534 | None:intergenic | 45.0% | |
ACCACACAAGATGTAGCACA+AGG | - | chr2.1:32948501-32948520 | MS.gene90429:CDS | 45.0% | |
ACTGACGAATAGGGAACCAT+GGG | + | chr2.1:32947368-32947387 | None:intergenic | 45.0% | |
AGCAACAAGTACCAAGGGAT+GGG | - | chr2.1:32949088-32949107 | MS.gene90429:intron | 45.0% | |
AGGACATCAGAGATGATGTC+GGG | + | chr2.1:32948127-32948146 | None:intergenic | 45.0% | |
AGGATAATATGCCGTAGCTG+AGG | + | chr2.1:32949745-32949764 | None:intergenic | 45.0% | |
ATAAAACACAAACGGGCCGT+AGG | + | chr2.1:32949517-32949536 | None:intergenic | 45.0% | |
ATATAGCCAGGGGATCCAAT+TGG | + | chr2.1:32948429-32948448 | None:intergenic | 45.0% | |
ATATGCCGTAGCTGAGGATT+TGG | + | chr2.1:32949739-32949758 | None:intergenic | 45.0% | |
ATCCACTCGTCCAATCATCT+CGG | + | chr2.1:32949635-32949654 | None:intergenic | 45.0% | |
ATGGAGAACAGGACCAGAAA+TGG | + | chr2.1:32948967-32948986 | None:intergenic | 45.0% | |
CACATGCAAGCTTACCATGT+TGG | + | chr2.1:32947007-32947026 | None:intergenic | 45.0% | |
CAGGACATCAGAGATGATGT+CGG | + | chr2.1:32948128-32948147 | None:intergenic | 45.0% | |
CCACACAAGATGTAGCACAA+GGG | - | chr2.1:32948502-32948521 | MS.gene90429:CDS | 45.0% | |
CCAGCCAAAACAAGCAAACA+AGG | - | chr2.1:32948701-32948720 | MS.gene90429:intron | 45.0% | |
CCATTCAGATGCAATGCCAA+AGG | - | chr2.1:32948983-32949002 | MS.gene90429:intron | 45.0% | |
CCTTTGGCATTGCATCTGAA+TGG | + | chr2.1:32948986-32949005 | None:intergenic | 45.0% | |
GAGCAACTCATCAGAAGTGA+AGG | - | chr2.1:32948632-32948651 | MS.gene90429:intron | 45.0% | |
TACTTTCCTGTGAACACACC+TGG | - | chr2.1:32948354-32948373 | MS.gene90429:CDS | 45.0% | |
TCAGGATGCACAGAATCGAA+TGG | - | chr2.1:32949415-32949434 | MS.gene90429:intron | 45.0% | |
TCGAGCCTCTTATTGCCATT+AGG | + | chr2.1:32949386-32949405 | None:intergenic | 45.0% | |
TCTCTTGCATGACCTTCTGA+CGG | + | chr2.1:32950019-32950038 | None:intergenic | 45.0% | |
TGAACTGTTGGGGATTTCGT+AGG | - | chr2.1:32948871-32948890 | MS.gene90429:intron | 45.0% | |
! | TTTTCTTCGCAGAGTCGTAC+TGG | - | chr2.1:32948570-32948589 | MS.gene90429:intron | 45.0% |
!!! | CCTTGTTTGCTTGTTTTGGC+TGG | + | chr2.1:32948704-32948723 | None:intergenic | 45.0% |
!!! | TTTATTTTTTTTATATTTTG+CGG | - | chr2.1:32947054-32947073 | MS.gene90429:CDS | 5.0% |
CAACAACCAATTGGATCCCC+TGG | - | chr2.1:32948420-32948439 | MS.gene90429:CDS | 50.0% | |
CACTGACGAATAGGGAACCA+TGG | + | chr2.1:32947369-32947388 | None:intergenic | 50.0% | |
CAGGAGGGTAAACCTGATAC+TGG | + | chr2.1:32948389-32948408 | None:intergenic | 50.0% | |
CAGTATCAGGTTTACCCTCC+TGG | - | chr2.1:32948387-32948406 | MS.gene90429:CDS | 50.0% | |
CCCTTGTGCTACATCTTGTG+TGG | + | chr2.1:32948505-32948524 | None:intergenic | 50.0% | |
CGATCTACCACTCGGTTTAC+TGG | + | chr2.1:32948547-32948566 | None:intergenic | 50.0% | |
CTCAGTACTAACCCATCCCT+TGG | + | chr2.1:32949102-32949121 | None:intergenic | 50.0% | |
CTCATGCCAGGATATCAGAC+TGG | - | chr2.1:32948321-32948340 | MS.gene90429:CDS | 50.0% | |
CTCTTGCATGACCTTCTGAC+GGG | + | chr2.1:32950018-32950037 | None:intergenic | 50.0% | |
GAATTGGCCAGTAAACCGAG+TGG | - | chr2.1:32948537-32948556 | MS.gene90429:CDS | 50.0% | |
GAGGCTCGACAATGCATTTC+AGG | - | chr2.1:32949397-32949416 | MS.gene90429:intron | 50.0% | |
GAGTAGCCAGTCTGATATCC+TGG | + | chr2.1:32948330-32948349 | None:intergenic | 50.0% | |
GCTATGCGGTAGCGTTAATG+TGG | - | chr2.1:32947514-32947533 | MS.gene90429:CDS | 50.0% | |
GGTTGTTGAAAGACGGAACC+AGG | + | chr2.1:32948408-32948427 | None:intergenic | 50.0% | |
GTATGGGCGAGTACACCTAA+TGG | - | chr2.1:32949368-32949387 | MS.gene90429:intron | 50.0% | |
GTTGAAAGACGGAACCAGGA+GGG | + | chr2.1:32948404-32948423 | None:intergenic | 50.0% | |
TGAGTTCAGGTCAACGCTAG+TGG | - | chr2.1:32949592-32949611 | MS.gene90429:CDS | 50.0% | |
TGATACTGGACATCGACACC+AGG | + | chr2.1:32948375-32948394 | None:intergenic | 50.0% | |
TGTGGAGTAGCCGAGATGAT+TGG | - | chr2.1:32949622-32949641 | MS.gene90429:CDS | 50.0% | |
TGTTGAAAGACGGAACCAGG+AGG | + | chr2.1:32948405-32948424 | None:intergenic | 50.0% | |
!! | TGGTGTCGATGTCCAGTATC+AGG | - | chr2.1:32948374-32948393 | MS.gene90429:CDS | 50.0% |
!! | TTATGTCGGCGCTGATGCTA+TGG | - | chr2.1:32947657-32947676 | MS.gene90429:CDS | 50.0% |
ACCATGGGAGGAAGCTAACC+TGG | + | chr2.1:32947353-32947372 | None:intergenic | 55.0% | |
AGCCGAGATGATTGGACGAG+TGG | - | chr2.1:32949630-32949649 | MS.gene90429:CDS | 55.0% | |
GACGAATAGGGAACCATGGG+AGG | + | chr2.1:32947365-32947384 | None:intergenic | 55.0% | |
GCGACGGGAAAAGAACCCTT+TGG | + | chr2.1:32949002-32949021 | None:intergenic | 55.0% | |
TCGACACCAGGTGTGTTCAC+AGG | + | chr2.1:32948363-32948382 | None:intergenic | 55.0% | |
!! | TCCAGGTTAGCTTCCTCCCA+TGG | - | chr2.1:32947349-32947368 | MS.gene90429:intron | 55.0% |
! | TCGCAGAGTCGTACTGGCAG+TGG | - | chr2.1:32948576-32948595 | MS.gene90429:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 32946789 | 32950076 | 32946789 | ID=MS.gene90429 |
chr2.1 | mRNA | 32946789 | 32950076 | 32946789 | ID=MS.gene90429.t1;Parent=MS.gene90429 |
chr2.1 | exon | 32950055 | 32950076 | 32950055 | ID=MS.gene90429.t1.exon1;Parent=MS.gene90429.t1 |
chr2.1 | CDS | 32950055 | 32950076 | 32950055 | ID=cds.MS.gene90429.t1;Parent=MS.gene90429.t1 |
chr2.1 | exon | 32949854 | 32949924 | 32949854 | ID=MS.gene90429.t1.exon2;Parent=MS.gene90429.t1 |
chr2.1 | CDS | 32949854 | 32949924 | 32949854 | ID=cds.MS.gene90429.t1;Parent=MS.gene90429.t1 |
chr2.1 | exon | 32949512 | 32949680 | 32949512 | ID=MS.gene90429.t1.exon3;Parent=MS.gene90429.t1 |
chr2.1 | CDS | 32949512 | 32949680 | 32949512 | ID=cds.MS.gene90429.t1;Parent=MS.gene90429.t1 |
chr2.1 | exon | 32949172 | 32949248 | 32949172 | ID=MS.gene90429.t1.exon4;Parent=MS.gene90429.t1 |
chr2.1 | CDS | 32949172 | 32949248 | 32949172 | ID=cds.MS.gene90429.t1;Parent=MS.gene90429.t1 |
chr2.1 | exon | 32948143 | 32948577 | 32948143 | ID=MS.gene90429.t1.exon5;Parent=MS.gene90429.t1 |
chr2.1 | CDS | 32948143 | 32948577 | 32948143 | ID=cds.MS.gene90429.t1;Parent=MS.gene90429.t1 |
chr2.1 | exon | 32947387 | 32947905 | 32947387 | ID=MS.gene90429.t1.exon6;Parent=MS.gene90429.t1 |
chr2.1 | CDS | 32947387 | 32947905 | 32947387 | ID=cds.MS.gene90429.t1;Parent=MS.gene90429.t1 |
chr2.1 | exon | 32947052 | 32947264 | 32947052 | ID=MS.gene90429.t1.exon7;Parent=MS.gene90429.t1 |
chr2.1 | CDS | 32947052 | 32947264 | 32947052 | ID=cds.MS.gene90429.t1;Parent=MS.gene90429.t1 |
chr2.1 | exon | 32946789 | 32946941 | 32946789 | ID=MS.gene90429.t1.exon8;Parent=MS.gene90429.t1 |
chr2.1 | CDS | 32946789 | 32946941 | 32946789 | ID=cds.MS.gene90429.t1;Parent=MS.gene90429.t1 |
Gene Sequence |
Protein sequence |