Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90479.t1 | XP_013457442.1 | 96.8 | 247 | 8 | 0 | 1 | 247 | 1 | 247 | 3.70E-133 | 484.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90479.t1 | Q9SWB8 | 68.4 | 244 | 77 | 0 | 5 | 248 | 4 | 247 | 7.3e-98 | 358.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90479.t1 | A0A072UR10 | 96.8 | 247 | 8 | 0 | 1 | 247 | 1 | 247 | 2.6e-133 | 484.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene90479 | 0.810088 | 1.37E-50 | -1.69E-46 |
| MS.gene049611 | MS.gene90479 | 0.806658 | 7.39E-50 | -1.69E-46 |
| MS.gene049634 | MS.gene90479 | 0.80492 | 1.71E-49 | -1.69E-46 |
| MS.gene050809 | MS.gene90479 | 0.810393 | 1.18E-50 | -1.69E-46 |
| MS.gene051138 | MS.gene90479 | 0.805895 | 1.07E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene90479 | 0.809702 | 1.66E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene90479 | 0.839336 | 1.68E-57 | -1.69E-46 |
| MS.gene054742 | MS.gene90479 | 0.800054 | 1.73E-48 | -1.69E-46 |
| MS.gene055154 | MS.gene90479 | 0.810954 | 8.92E-51 | -1.69E-46 |
| MS.gene055959 | MS.gene90479 | 0.813747 | 2.19E-51 | -1.69E-46 |
| MS.gene056224 | MS.gene90479 | 0.812851 | 3.44E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene90479 | 0.803229 | 3.85E-49 | -1.69E-46 |
| MS.gene058067 | MS.gene90479 | 0.803372 | 3.60E-49 | -1.69E-46 |
| MS.gene058068 | MS.gene90479 | 0.819809 | 9.56E-53 | -1.69E-46 |
| MS.gene058093 | MS.gene90479 | 0.81008 | 1.38E-50 | -1.69E-46 |
| MS.gene058099 | MS.gene90479 | 0.829323 | 5.49E-55 | -1.69E-46 |
| MS.gene058603 | MS.gene90479 | 0.818417 | 1.98E-52 | -1.69E-46 |
| MS.gene058840 | MS.gene90479 | 0.805446 | 1.33E-49 | -1.69E-46 |
| MS.gene059038 | MS.gene90479 | 0.806018 | 1.01E-49 | -1.69E-46 |
| MS.gene059955 | MS.gene90479 | 0.800758 | 1.24E-48 | -1.69E-46 |
| MS.gene060405 | MS.gene90479 | 0.832556 | 8.84E-56 | -1.69E-46 |
| MS.gene06074 | MS.gene90479 | 0.800984 | 1.12E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90479.t1 | MTR_4g094898 | 96.761 | 247 | 8 | 0 | 1 | 247 | 1 | 247 | 1.17e-180 | 496 |
| MS.gene90479.t1 | MTR_4g094815 | 85.081 | 248 | 37 | 0 | 1 | 248 | 1 | 248 | 1.57e-162 | 450 |
| MS.gene90479.t1 | MTR_4g094925 | 79.757 | 247 | 45 | 1 | 1 | 247 | 1 | 242 | 8.85e-149 | 415 |
| MS.gene90479.t1 | MTR_4g094812 | 82.186 | 247 | 42 | 1 | 1 | 247 | 1 | 245 | 5.61e-143 | 400 |
| MS.gene90479.t1 | MTR_4g094898 | 96.774 | 186 | 6 | 0 | 62 | 247 | 1 | 186 | 7.19e-132 | 370 |
| MS.gene90479.t1 | MTR_4g085590 | 68.443 | 244 | 72 | 1 | 4 | 247 | 8 | 246 | 3.02e-126 | 358 |
| MS.gene90479.t1 | MTR_4g094925 | 84.127 | 189 | 30 | 0 | 59 | 247 | 23 | 211 | 1.35e-119 | 340 |
| MS.gene90479.t1 | MTR_8g021225 | 58.009 | 231 | 95 | 1 | 18 | 246 | 3 | 233 | 3.72e-91 | 268 |
| MS.gene90479.t1 | MTR_8g101900 | 55.804 | 224 | 98 | 1 | 24 | 247 | 12 | 234 | 6.93e-83 | 248 |
| MS.gene90479.t1 | MTR_6g091680 | 56.637 | 226 | 95 | 2 | 23 | 247 | 14 | 237 | 1.41e-82 | 247 |
| MS.gene90479.t1 | MTR_4g094368 | 55.310 | 226 | 98 | 3 | 22 | 245 | 3 | 227 | 5.81e-81 | 243 |
| MS.gene90479.t1 | MTR_2g070410 | 36.015 | 261 | 126 | 8 | 8 | 246 | 56 | 297 | 4.53e-46 | 155 |
| MS.gene90479.t1 | MTR_2g070410 | 35.514 | 214 | 107 | 5 | 8 | 201 | 56 | 258 | 1.18e-36 | 130 |
| MS.gene90479.t1 | MTR_7g023150 | 92.857 | 28 | 2 | 0 | 32 | 59 | 64 | 91 | 1.48e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90479.t1 | AT4G34050 | 68.571 | 245 | 76 | 1 | 5 | 248 | 15 | 259 | 4.78e-127 | 360 |
| MS.gene90479.t1 | AT4G34050 | 68.571 | 245 | 76 | 1 | 5 | 248 | 42 | 286 | 6.22e-127 | 361 |
| MS.gene90479.t1 | AT4G26220 | 57.522 | 226 | 95 | 1 | 22 | 247 | 7 | 231 | 1.01e-93 | 275 |
| MS.gene90479.t1 | AT1G67980 | 56.140 | 228 | 94 | 3 | 22 | 247 | 8 | 231 | 6.55e-87 | 258 |
| MS.gene90479.t1 | AT1G67990 | 52.137 | 234 | 107 | 3 | 16 | 247 | 2 | 232 | 1.29e-79 | 239 |
| MS.gene90479.t1 | AT1G24735 | 53.304 | 227 | 100 | 4 | 24 | 247 | 16 | 239 | 1.06e-76 | 232 |
| MS.gene90479.t1 | AT1G24735 | 53.684 | 190 | 84 | 3 | 59 | 247 | 8 | 194 | 2.53e-65 | 201 |
| MS.gene90479.t1 | AT1G24735 | 53.684 | 190 | 84 | 3 | 59 | 247 | 104 | 290 | 2.57e-64 | 202 |
| MS.gene90479.t1 | AT4G34050 | 68.067 | 119 | 38 | 0 | 130 | 248 | 30 | 148 | 1.34e-59 | 185 |
| MS.gene90479.t1 | AT3G62000 | 40.969 | 227 | 104 | 8 | 30 | 246 | 71 | 277 | 4.95e-47 | 157 |
| MS.gene90479.t1 | AT1G67980 | 46.988 | 166 | 84 | 2 | 82 | 247 | 2 | 163 | 2.05e-46 | 152 |
| MS.gene90479.t1 | AT3G61990 | 39.819 | 221 | 112 | 6 | 30 | 246 | 86 | 289 | 4.75e-44 | 150 |
| MS.gene90479.t1 | AT3G62000 | 40.553 | 217 | 99 | 8 | 30 | 236 | 71 | 267 | 2.30e-40 | 142 |
Find 55 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAGAACACAATGGAAAT+TGG | 0.290180 | 8.3:-23370152 | MS.gene90479:CDS |
| CTCTTATTAGGTATTGGCTT+TGG | 0.301329 | 8.3:-23368966 | MS.gene90479:intron |
| CACCTATGATGGATTTCATT+AGG | 0.322716 | 8.3:-23368502 | MS.gene90479:CDS |
| TGATTGATCTTGTTAAGGTT+GGG | 0.361490 | 8.3:-23368583 | MS.gene90479:CDS |
| TTCAAGCAAGGGTGTTCTCT+TGG | 0.372126 | 8.3:+23370863 | None:intergenic |
| TCGGATACGATAATACCTTA+TGG | 0.375086 | 8.3:-23368553 | MS.gene90479:CDS |
| CAAGAGATGGCTATCAATAA+TGG | 0.384566 | 8.3:-23371318 | None:intergenic |
| ATGATTGATCTTGTTAAGGT+TGG | 0.391503 | 8.3:-23368584 | MS.gene90479:CDS |
| AAGAGAACACCCTTGCTTGA+AGG | 0.414633 | 8.3:-23370861 | MS.gene90479:CDS |
| GCCCTTGCTCTTCCATCTGA+TGG | 0.437597 | 8.3:-23370098 | MS.gene90479:CDS |
| TGAAGGAGTTCATCAAGAAA+AGG | 0.438463 | 8.3:+23368851 | None:intergenic |
| GAGGATGATTGATCTTGTTA+AGG | 0.466309 | 8.3:-23368588 | MS.gene90479:CDS |
| TCCATCTGATGCACCTATGA+TGG | 0.468925 | 8.3:-23368513 | MS.gene90479:CDS |
| GAAGCAAACATACATCTTGA+AGG | 0.470286 | 8.3:+23368834 | None:intergenic |
| TTCCTAATGAAATCCATCAT+AGG | 0.472967 | 8.3:+23368500 | None:intergenic |
| GATTGATCTTGTTAAGGTTG+GGG | 0.475443 | 8.3:-23368582 | MS.gene90479:CDS |
| TTAGTTGATGCGGCGACATA+AGG | 0.477226 | 8.3:+23368388 | None:intergenic |
| CGCCACTGATCCACTCCATA+AGG | 0.479866 | 8.3:+23368538 | None:intergenic |
| TCATCAAGAAAAGGGAGAGC+AGG | 0.480559 | 8.3:+23368860 | None:intergenic |
| TATAAGTTGTCCTTCATCAC+CGG | 0.497804 | 8.3:+23370199 | None:intergenic |
| TTGCTCACAAGATTGACTTT+AGG | 0.499180 | 8.3:-23368889 | MS.gene90479:CDS |
| AGCCTTGCCTTTCCATCAGA+TGG | 0.500086 | 8.3:+23370086 | None:intergenic |
| CATCACCGGGTATAGCCATA+TGG | 0.500442 | 8.3:+23370213 | None:intergenic |
| GAGTCGAGAATACTATGAGC+TGG | 0.500510 | 8.3:-23368939 | MS.gene90479:CDS |
| GAAGGAGTTCATCAAGAAAA+GGG | 0.500517 | 8.3:+23368852 | None:intergenic |
| AGATGGAAGAGCAAGGGCAG+TGG | 0.505752 | 8.3:+23370103 | None:intergenic |
| TGTCAACTCTCTATAGCTGA+TGG | 0.510176 | 8.3:-23368416 | MS.gene90479:CDS |
| ATGGCTATACCCGGTGATGA+AGG | 0.518965 | 8.3:-23370209 | MS.gene90479:CDS |
| TGCTCTTCCATCTGATGGAA+AGG | 0.519701 | 8.3:-23370093 | MS.gene90479:intron |
| GATTTGCGTCTCCGATGAGT+TGG | 0.538504 | 8.3:+23371280 | None:intergenic |
| GTCAACTCTCTATAGCTGAT+GGG | 0.563049 | 8.3:-23368415 | MS.gene90479:CDS |
| ATAAGTTGTCCTTCATCACC+GGG | 0.570862 | 8.3:+23370200 | None:intergenic |
| ATTGATCTTGTTAAGGTTGG+GGG | 0.571837 | 8.3:-23368581 | MS.gene90479:CDS |
| TCACGTAGCTCCTTCAAGCA+AGG | 0.573437 | 8.3:+23370851 | None:intergenic |
| CACGTAGCTCCTTCAAGCAA+GGG | 0.574217 | 8.3:+23370852 | None:intergenic |
| CACAAGATTGACTTTAGGCA+AGG | 0.576679 | 8.3:-23368884 | MS.gene90479:CDS |
| ATATTGAAACAGGAACCATA+TGG | 0.577851 | 8.3:-23370228 | MS.gene90479:intron |
| GATAAAGTGCATCACTCTGA+AGG | 0.581770 | 8.3:+23371241 | None:intergenic |
| TCCATCATAGGTGCATCAGA+TGG | 0.582973 | 8.3:+23368512 | None:intergenic |
| TACGATAATACCTTATGGAG+TGG | 0.583996 | 8.3:-23368548 | MS.gene90479:CDS |
| AGGACAACTTATAAGCATGT+TGG | 0.591106 | 8.3:-23370189 | MS.gene90479:CDS |
| AGTCGAGAATACTATGAGCT+GGG | 0.593435 | 8.3:-23368938 | MS.gene90479:CDS |
| TACCTTATGGAGTGGATCAG+TGG | 0.602136 | 8.3:-23368540 | MS.gene90479:CDS |
| TCCATCAGATGGAAGAGCAA+GGG | 0.613310 | 8.3:+23370097 | None:intergenic |
| TTCCATCAGATGGAAGAGCA+AGG | 0.614066 | 8.3:+23370096 | None:intergenic |
| GCTCATAGTATTCTCGACTC+AGG | 0.618788 | 8.3:+23368942 | None:intergenic |
| GAACAACAAAACCAACTCAT+CGG | 0.626049 | 8.3:-23371291 | MS.gene90479:CDS |
| ATGGAAATTGGTGTGTACAC+TGG | 0.640887 | 8.3:-23370140 | MS.gene90479:CDS |
| AAATGAGAGATTAGTTGATG+CGG | 0.647761 | 8.3:+23368378 | None:intergenic |
| TATCAATGCAAAGAACACAA+TGG | 0.649047 | 8.3:-23370159 | MS.gene90479:CDS |
| GATGGCTATCAATAATGGAG+AGG | 0.655271 | 8.3:-23371313 | MS.gene90479:CDS |
| GATTTCATTAGGAATTTACG+TGG | 0.656840 | 8.3:-23368491 | MS.gene90479:CDS |
| AGGAACCATATGGCTATACC+CGG | 0.667991 | 8.3:-23370218 | MS.gene90479:CDS |
| ACTACTTAAACTATCACGTG+AGG | 0.676055 | 8.3:-23368607 | MS.gene90479:CDS |
| CTTATGGAGTGGATCAGTGG+CGG | 0.687276 | 8.3:-23368537 | MS.gene90479:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATAATGAAATAAAGT+TGG | + | chr8.3:23370900-23370919 | None:intergenic | 10.0% |
| !!! | AAGTTTGTTTTTTTATTATA+AGG | + | chr8.3:23368925-23368944 | None:intergenic | 10.0% |
| !! | AGTGTATAATCTTATAAATA+AGG | + | chr8.3:23369660-23369679 | None:intergenic | 15.0% |
| !! | CAACAAAAAAAAAAAAACTT+GGG | - | chr8.3:23368782-23368801 | MS.gene90479:intron | 15.0% |
| !! | GATTAATTAACTAATTGAAT+TGG | - | chr8.3:23371000-23371019 | MS.gene90479:intron | 15.0% |
| !! | TCAACAAAAAAAAAAAAACT+TGG | - | chr8.3:23368781-23368800 | MS.gene90479:intron | 15.0% |
| !! | TCTCAAAATAACATATATTT+GGG | + | chr8.3:23368991-23369010 | None:intergenic | 15.0% |
| !! | TTCTCAAAATAACATATATT+TGG | + | chr8.3:23368992-23369011 | None:intergenic | 15.0% |
| !!! | AACAAAGAAATACTTTTAAA+AGG | + | chr8.3:23370311-23370330 | None:intergenic | 15.0% |
| !!! | TATATATTTTTTCATAAGCA+TGG | + | chr8.3:23369372-23369391 | None:intergenic | 15.0% |
| !!! | TTATTTTCCTGTAAAATTAA+TGG | + | chr8.3:23371029-23371048 | None:intergenic | 15.0% |
| !! | AAAATTACGCGATTAAAAAT+AGG | + | chr8.3:23369796-23369815 | None:intergenic | 20.0% |
| !! | AAATATAAGAGGCTTATAAT+TGG | + | chr8.3:23368735-23368754 | None:intergenic | 20.0% |
| !! | ATCAATATGTATATTGAAAC+AGG | - | chr8.3:23369462-23369481 | MS.gene90479:intron | 20.0% |
| !! | GATAAATGAGAAAATAATAG+TGG | + | chr8.3:23368564-23368583 | None:intergenic | 20.0% |
| !! | GTGTAATAATCAAATATAAG+AGG | + | chr8.3:23368746-23368765 | None:intergenic | 20.0% |
| !! | GTTCTTATAATTAGAAATGA+AGG | + | chr8.3:23370260-23370279 | None:intergenic | 20.0% |
| !! | TTGTTCCAAAAATATTTGTT+GGG | + | chr8.3:23368958-23368977 | None:intergenic | 20.0% |
| !! | TTTGTTCCAAAAATATTTGT+TGG | + | chr8.3:23368959-23368978 | None:intergenic | 20.0% |
| !!! | ATATTCCCAACAAATATTTT+TGG | - | chr8.3:23368950-23368969 | MS.gene90479:CDS | 20.0% |
| !!! | ATGAATTTTAGTAATCTCAA+AGG | - | chr8.3:23369414-23369433 | MS.gene90479:intron | 20.0% |
| !!! | ATTTTACAGGAAAATAACAA+AGG | - | chr8.3:23371032-23371051 | MS.gene90479:intron | 20.0% |
| !!! | ATTTTACTTAATTGCAGTTT+TGG | - | chr8.3:23369737-23369756 | MS.gene90479:intron | 20.0% |
| !!! | TATTTTTAATCGCGTAATTT+TGG | - | chr8.3:23369795-23369814 | MS.gene90479:intron | 20.0% |
| !!! | TGTTTTCACTTTTTTAAAGT+GGG | - | chr8.3:23369017-23369036 | MS.gene90479:intron | 20.0% |
| !!! | TTGTTTTCACTTTTTTAAAG+TGG | - | chr8.3:23369016-23369035 | MS.gene90479:intron | 20.0% |
| !!! | TTTTACAGGAAAATAACAAA+GGG | - | chr8.3:23371033-23371052 | MS.gene90479:intron | 20.0% |
| !!! | TTTTCTCATTTATCTTGTTT+CGG | - | chr8.3:23368570-23368589 | MS.gene90479:CDS | 20.0% |
| ! | AAATATGAAGACCATAATTG+TGG | - | chr8.3:23370098-23370117 | MS.gene90479:CDS | 25.0% |
| ! | AATAGATGACTAGATAATTG+TGG | + | chr8.3:23368491-23368510 | None:intergenic | 25.0% |
| ! | ATAAGGATAGATGAGTAATA+AGG | + | chr8.3:23369643-23369662 | None:intergenic | 25.0% |
| ! | CATTCATTAAATGATGTATG+TGG | - | chr8.3:23368628-23368647 | MS.gene90479:CDS | 25.0% |
| ! | GAATTCAAGTATATACTACT+TGG | + | chr8.3:23369319-23369338 | None:intergenic | 25.0% |
| ! | GAATTCTTTGCTAATTTGAT+AGG | - | chr8.3:23369333-23369352 | MS.gene90479:intron | 25.0% |
| !! | TTTTGACAAAACCACAATTA+TGG | + | chr8.3:23370112-23370131 | None:intergenic | 25.0% |
| !!! | TAATCTCAAAGGTTTAGTTT+TGG | - | chr8.3:23369425-23369444 | MS.gene90479:intron | 25.0% |
| ATATTGAAACAGGAACCATA+TGG | - | chr8.3:23369472-23369491 | MS.gene90479:intron | 30.0% | |
| ATCATTGTCTCTCTCTTATT+AGG | - | chr8.3:23370722-23370741 | MS.gene90479:intron | 30.0% | |
| ATGATTGATCTTGTTAAGGT+TGG | - | chr8.3:23371116-23371135 | MS.gene90479:intron | 30.0% | |
| ATGCATGGATGAAATCAAAT+TGG | + | chr8.3:23370947-23370966 | None:intergenic | 30.0% | |
| ATTACGCGATTAAAAATAGG+AGG | + | chr8.3:23369793-23369812 | None:intergenic | 30.0% | |
| ATTTAAATAGAACCGCAACT+TGG | - | chr8.3:23369766-23369785 | MS.gene90479:intron | 30.0% | |
| GATTTCATTAGGAATTTACG+TGG | - | chr8.3:23371209-23371228 | MS.gene90479:intron | 30.0% | |
| GTTGCGGTTCTATTTAAATA+AGG | + | chr8.3:23369765-23369784 | None:intergenic | 30.0% | |
| TATCAATGCAAAGAACACAA+TGG | - | chr8.3:23369541-23369560 | MS.gene90479:intron | 30.0% | |
| TGATTGATCTTGTTAAGGTT+GGG | - | chr8.3:23371117-23371136 | MS.gene90479:intron | 30.0% | |
| TTCCTAATGAAATCCATCAT+AGG | + | chr8.3:23371203-23371222 | None:intergenic | 30.0% | |
| ! | AGTCAACGAATTTGAAATGA+GGG | + | chr8.3:23369822-23369841 | None:intergenic | 30.0% |
| ! | TACCAATATTGAACGTTTTC+CGG | + | chr8.3:23370476-23370495 | None:intergenic | 30.0% |
| ! | TAGTCAACGAATTTGAAATG+AGG | + | chr8.3:23369823-23369842 | None:intergenic | 30.0% |
| !! | AACCATCTAATTTGATGATG+TGG | + | chr8.3:23370022-23370041 | None:intergenic | 30.0% |
| !! | TTGGTGTCCATTAATTTTAC+AGG | - | chr8.3:23371019-23371038 | MS.gene90479:intron | 30.0% |
| !!! | TATTTCGAGTTGCTCAATTT+TGG | + | chr8.3:23370083-23370102 | None:intergenic | 30.0% |
| !!! | TTTCACTTTTTTAAAGTGGG+TGG | - | chr8.3:23369020-23369039 | MS.gene90479:intron | 30.0% |
| ACTACTTAAACTATCACGTG+AGG | - | chr8.3:23371093-23371112 | MS.gene90479:intron | 35.0% | |
| AGGACAACTTATAAGCATGT+TGG | - | chr8.3:23369511-23369530 | MS.gene90479:intron | 35.0% | |
| AGGATAGATGAGTAATAAGG+TGG | + | chr8.3:23369640-23369659 | None:intergenic | 35.0% | |
| ATTGATCTTGTTAAGGTTGG+GGG | - | chr8.3:23371119-23371138 | MS.gene90479:intron | 35.0% | |
| GAAATGTTTGATGCTTCTTG+GGG | - | chr8.3:23370572-23370591 | MS.gene90479:intron | 35.0% | |
| GAACAACAAAACCAACTCAT+CGG | - | chr8.3:23368409-23368428 | MS.gene90479:CDS | 35.0% | |
| GAAGCAAACATACATCTTGA+AGG | + | chr8.3:23370869-23370888 | None:intergenic | 35.0% | |
| GAAGGAGTTCATCAAGAAAA+GGG | + | chr8.3:23370851-23370870 | None:intergenic | 35.0% | |
| GAGGATGATTGATCTTGTTA+AGG | - | chr8.3:23371112-23371131 | MS.gene90479:intron | 35.0% | |
| GATTGATCTTGTTAAGGTTG+GGG | - | chr8.3:23371118-23371137 | MS.gene90479:intron | 35.0% | |
| GCAAAGAACACAATGGAAAT+TGG | - | chr8.3:23369548-23369567 | MS.gene90479:intron | 35.0% | |
| GGAAATGTTTGATGCTTCTT+GGG | - | chr8.3:23370571-23370590 | MS.gene90479:intron | 35.0% | |
| GTCTCTCTCTTATTAGGTAT+TGG | - | chr8.3:23370728-23370747 | MS.gene90479:intron | 35.0% | |
| TACGATAATACCTTATGGAG+TGG | - | chr8.3:23371152-23371171 | MS.gene90479:intron | 35.0% | |
| TATAAGTTGTCCTTCATCAC+CGG | + | chr8.3:23369504-23369523 | None:intergenic | 35.0% | |
| TATCTACTCGACAATTCATC+CGG | + | chr8.3:23370621-23370640 | None:intergenic | 35.0% | |
| TCGGATACGATAATACCTTA+TGG | - | chr8.3:23371147-23371166 | MS.gene90479:intron | 35.0% | |
| TGAAGGAGTTCATCAAGAAA+AGG | + | chr8.3:23370852-23370871 | None:intergenic | 35.0% | |
| TGACATGACTTGAAAACGAA+TGG | + | chr8.3:23369987-23370006 | None:intergenic | 35.0% | |
| TGCCACATCATCAAATTAGA+TGG | - | chr8.3:23370017-23370036 | MS.gene90479:intron | 35.0% | |
| ! | TTGCTCACAAGATTGACTTT+AGG | - | chr8.3:23370811-23370830 | MS.gene90479:intron | 35.0% |
| !! | CACCTATGATGGATTTCATT+AGG | - | chr8.3:23371198-23371217 | MS.gene90479:intron | 35.0% |
| !! | CTCTTATTAGGTATTGGCTT+TGG | - | chr8.3:23370734-23370753 | MS.gene90479:intron | 35.0% |
| !!! | GACGTTTGACTTTGTTTTTG+TGG | - | chr8.3:23371055-23371074 | MS.gene90479:intron | 35.0% |
| !!! | TGTGGTTTTGTCAAAAGATG+TGG | - | chr8.3:23370116-23370135 | MS.gene90479:CDS | 35.0% |
| AAAATAGGAGGACCAAGTTG+CGG | + | chr8.3:23369781-23369800 | None:intergenic | 40.0% | |
| AACAACGTATGATCTTACCG+AGG | + | chr8.3:23368891-23368910 | None:intergenic | 40.0% | |
| ACAACGTATGATCTTACCGA+GGG | + | chr8.3:23368890-23368909 | None:intergenic | 40.0% | |
| ACTGCCCATGATTGAAAAAG+CGG | - | chr8.3:23370785-23370804 | MS.gene90479:intron | 40.0% | |
| AGATGACAGAAAAACACCCT+CGG | - | chr8.3:23368871-23368890 | MS.gene90479:CDS | 40.0% | |
| AGCCGGAAAACGTTCAATAT+TGG | - | chr8.3:23370471-23370490 | MS.gene90479:intron | 40.0% | |
| AGTCGAGAATACTATGAGCT+GGG | - | chr8.3:23370762-23370781 | MS.gene90479:intron | 40.0% | |
| ATAAGTTGTCCTTCATCACC+GGG | + | chr8.3:23369503-23369522 | None:intergenic | 40.0% | |
| ATGGAAATTGGTGTGTACAC+TGG | - | chr8.3:23369560-23369579 | MS.gene90479:intron | 40.0% | |
| CGGAAATGTTTGATGCTTCT+TGG | - | chr8.3:23370570-23370589 | MS.gene90479:intron | 40.0% | |
| CTAAGTTTGCGAAACATGCA+TGG | + | chr8.3:23370962-23370981 | None:intergenic | 40.0% | |
| GATAAAGTGCATCACTCTGA+AGG | + | chr8.3:23368462-23368481 | None:intergenic | 40.0% | |
| GTCAACTCTCTATAGCTGAT+GGG | - | chr8.3:23371285-23371304 | MS.gene90479:CDS | 40.0% | |
| TCGAGTAGATAGATCAGATC+CGG | - | chr8.3:23370630-23370649 | MS.gene90479:intron | 40.0% | |
| TGTCAACTCTCTATAGCTGA+TGG | - | chr8.3:23371284-23371303 | MS.gene90479:CDS | 40.0% | |
| ! | CACAAGATTGACTTTAGGCA+AGG | - | chr8.3:23370816-23370835 | MS.gene90479:intron | 40.0% |
| ! | TATTGAACGTTTTCCGGCTT+TGG | + | chr8.3:23370470-23370489 | None:intergenic | 40.0% |
| !! | ACTAAAAGCATCTCCAAAGC+CGG | - | chr8.3:23370454-23370473 | MS.gene90479:intron | 40.0% |
| !!! | AACTCCCGCTTTTTCAATCA+TGG | + | chr8.3:23370793-23370812 | None:intergenic | 40.0% |
| !!! | ACTCCCGCTTTTTCAATCAT+GGG | + | chr8.3:23370792-23370811 | None:intergenic | 40.0% |
| !!! | CTTTTTTAAAGTGGGTGGAG+TGG | - | chr8.3:23369025-23369044 | MS.gene90479:intron | 40.0% |
| AAGAGAACACCCTTGCTTGA+AGG | - | chr8.3:23368839-23368858 | MS.gene90479:intron | 45.0% | |
| AGGAACCATATGGCTATACC+CGG | - | chr8.3:23369482-23369501 | MS.gene90479:intron | 45.0% | |
| CTACTCTCATTCTCGCTCAT+CGG | - | chr8.3:23370550-23370569 | MS.gene90479:intron | 45.0% | |
| CTGCCCATGATTGAAAAAGC+GGG | - | chr8.3:23370786-23370805 | MS.gene90479:intron | 45.0% | |
| GAGTCGAGAATACTATGAGC+TGG | - | chr8.3:23370761-23370780 | MS.gene90479:intron | 45.0% | |
| GATGAGCGAGAATGAGAGTA+GGG | + | chr8.3:23370551-23370570 | None:intergenic | 45.0% | |
| GCTCATAGTATTCTCGACTC+AGG | + | chr8.3:23370761-23370780 | None:intergenic | 45.0% | |
| GTTAAGGTTGGGGGACTAAT+CGG | - | chr8.3:23371128-23371147 | MS.gene90479:intron | 45.0% | |
| TACCTTATGGAGTGGATCAG+TGG | - | chr8.3:23371160-23371179 | MS.gene90479:intron | 45.0% | |
| TCATCAAGAAAAGGGAGAGC+AGG | + | chr8.3:23370843-23370862 | None:intergenic | 45.0% | |
| TCCATCAGATGGAAGAGCAA+GGG | + | chr8.3:23369606-23369625 | None:intergenic | 45.0% | |
| TCCATCATAGGTGCATCAGA+TGG | + | chr8.3:23371191-23371210 | None:intergenic | 45.0% | |
| TCCATCTGATGCACCTATGA+TGG | - | chr8.3:23371187-23371206 | MS.gene90479:intron | 45.0% | |
| TGCTCTTCCATCTGATGGAA+AGG | - | chr8.3:23369607-23369626 | MS.gene90479:intron | 45.0% | |
| TTCCATCAGATGGAAGAGCA+AGG | + | chr8.3:23369607-23369626 | None:intergenic | 45.0% | |
| TTCCATCTGATGGAAAGGCA+AGG | - | chr8.3:23369612-23369631 | MS.gene90479:intron | 45.0% | |
| ! | TTAGTTGATGCGGCGACATA+AGG | + | chr8.3:23371315-23371334 | None:intergenic | 45.0% |
| !! | TTCAAGCAAGGGTGTTCTCT+TGG | + | chr8.3:23368840-23368859 | None:intergenic | 45.0% |
| !!! | AATAATAATTTTACATAAAT+TGG | + | chr8.3:23369720-23369739 | None:intergenic | 5.0% |
| ACAGGAGAAACGGGTGAAGT+TGG | + | chr8.3:23370528-23370547 | None:intergenic | 50.0% | |
| AGAGTAGGGACAGGAGAAAC+GGG | + | chr8.3:23370537-23370556 | None:intergenic | 50.0% | |
| AGATAGATCAGATCCGGACG+CGG | - | chr8.3:23370636-23370655 | MS.gene90479:intron | 50.0% | |
| AGCCTTGCCTTTCCATCAGA+TGG | + | chr8.3:23369617-23369636 | None:intergenic | 50.0% | |
| AGGAGAAACGGGTGAAGTTG+GGG | + | chr8.3:23370526-23370545 | None:intergenic | 50.0% | |
| ATGGCTATACCCGGTGATGA+AGG | - | chr8.3:23369491-23369510 | MS.gene90479:intron | 50.0% | |
| CACGTAGCTCCTTCAAGCAA+GGG | + | chr8.3:23368851-23368870 | None:intergenic | 50.0% | |
| CAGGAGAAACGGGTGAAGTT+GGG | + | chr8.3:23370527-23370546 | None:intergenic | 50.0% | |
| CATCACCGGGTATAGCCATA+TGG | + | chr8.3:23369490-23369509 | None:intergenic | 50.0% | |
| CGATGAGCGAGAATGAGAGT+AGG | + | chr8.3:23370552-23370571 | None:intergenic | 50.0% | |
| CTTATGGAGTGGATCAGTGG+CGG | - | chr8.3:23371163-23371182 | MS.gene90479:intron | 50.0% | |
| GAGAGTAGGGACAGGAGAAA+CGG | + | chr8.3:23370538-23370557 | None:intergenic | 50.0% | |
| GATGCTTCTTGGGGCTTCTT+TGG | - | chr8.3:23370581-23370600 | MS.gene90479:intron | 50.0% | |
| GATTTGCGTCTCCGATGAGT+TGG | + | chr8.3:23368423-23368442 | None:intergenic | 50.0% | |
| TCACGTAGCTCCTTCAAGCA+AGG | + | chr8.3:23368852-23368871 | None:intergenic | 50.0% | |
| TTTGGCGAACGTGAAGTCAC+CGG | - | chr8.3:23370599-23370618 | MS.gene90479:intron | 50.0% | |
| ACGGGTGAAGTTGGGGCTTA+TGG | + | chr8.3:23370519-23370538 | None:intergenic | 55.0% | |
| AGATGGAAGAGCAAGGGCAG+TGG | + | chr8.3:23369600-23369619 | None:intergenic | 55.0% | |
| CGCCACTGATCCACTCCATA+AGG | + | chr8.3:23371165-23371184 | None:intergenic | 55.0% | |
| GCCCTTGCTCTTCCATCTGA+TGG | - | chr8.3:23369602-23369621 | MS.gene90479:intron | 55.0% | |
| GCGAGAATGAGAGTAGGGAC+AGG | + | chr8.3:23370546-23370565 | None:intergenic | 55.0% | |
| AAAACATCTCCTGCCCCCGC+AGG | + | chr8.3:23370685-23370704 | None:intergenic | 60.0% | |
| GCTGTTGCTCCGCGGTGATA+CGG | - | chr8.3:23370658-23370677 | MS.gene90479:intron | 60.0% | |
| TCCGCGGTGATACGGACCTG+CGG | - | chr8.3:23370666-23370685 | MS.gene90479:intron | 65.0% | |
| CCCGCAGGTCCGTATCACCG+CGG | + | chr8.3:23370670-23370689 | None:intergenic | 70.0% | |
| CCGCGGTGATACGGACCTGC+GGG | - | chr8.3:23370667-23370686 | MS.gene90479:intron | 70.0% | |
| CGCGGTGATACGGACCTGCG+GGG | - | chr8.3:23370668-23370687 | MS.gene90479:intron | 70.0% | |
| GCGGTGATACGGACCTGCGG+GGG | - | chr8.3:23370669-23370688 | MS.gene90479:intron | 70.0% | |
| TGATACGGACCTGCGGGGGC+AGG | - | chr8.3:23370673-23370692 | MS.gene90479:intron | 70.0% | |
| CGCGGAGCAACAGCCGCGTC+CGG | + | chr8.3:23370652-23370671 | None:intergenic | 75.0% | |
| CGGACGCGGCTGTTGCTCCG+CGG | - | chr8.3:23370650-23370669 | MS.gene90479:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 23368388 | 23371334 | 23368388 | ID=MS.gene90479 |
| chr8.3 | mRNA | 23368388 | 23371334 | 23368388 | ID=MS.gene90479.t1;Parent=MS.gene90479 |
| chr8.3 | exon | 23371239 | 23371334 | 23371239 | ID=MS.gene90479.t1.exon1;Parent=MS.gene90479.t1 |
| chr8.3 | CDS | 23371239 | 23371334 | 23371239 | ID=cds.MS.gene90479.t1;Parent=MS.gene90479.t1 |
| chr8.3 | exon | 23370830 | 23370909 | 23370830 | ID=MS.gene90479.t1.exon2;Parent=MS.gene90479.t1 |
| chr8.3 | CDS | 23370830 | 23370909 | 23370830 | ID=cds.MS.gene90479.t1;Parent=MS.gene90479.t1 |
| chr8.3 | exon | 23370094 | 23370238 | 23370094 | ID=MS.gene90479.t1.exon3;Parent=MS.gene90479.t1 |
| chr8.3 | CDS | 23370094 | 23370238 | 23370094 | ID=cds.MS.gene90479.t1;Parent=MS.gene90479.t1 |
| chr8.3 | exon | 23368847 | 23368978 | 23368847 | ID=MS.gene90479.t1.exon4;Parent=MS.gene90479.t1 |
| chr8.3 | CDS | 23368847 | 23368978 | 23368847 | ID=cds.MS.gene90479.t1;Parent=MS.gene90479.t1 |
| chr8.3 | exon | 23368388 | 23368681 | 23368388 | ID=MS.gene90479.t1.exon5;Parent=MS.gene90479.t1 |
| chr8.3 | CDS | 23368388 | 23368681 | 23368388 | ID=cds.MS.gene90479.t1;Parent=MS.gene90479.t1 |
| Gene Sequence |
| Protein sequence |
