Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91268.t1 | XP_013464864.1 | 96.3 | 835 | 30 | 1 | 1 | 834 | 1 | 835 | 0.00E+00 | 1463.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91268.t1 | A8MQ27 | 41.1 | 56 | 32 | 1 | 778 | 832 | 498 | 553 | 4.0e-07 | 58.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91268.t1 | A0A072VA62 | 96.3 | 835 | 30 | 1 | 1 | 834 | 1 | 835 | 0.0e+00 | 1463.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051832 | MS.gene91268 | 0.80222 | 6.22E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene91268 | 0.813915 | 2.01E-51 | -1.69E-46 |
| MS.gene05308 | MS.gene91268 | 0.807305 | 5.39E-50 | -1.69E-46 |
| MS.gene053272 | MS.gene91268 | -0.808748 | 2.66E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene91268 | 0.853849 | 1.82E-61 | -1.69E-46 |
| MS.gene056973 | MS.gene91268 | 0.844516 | 7.20E-59 | -1.69E-46 |
| MS.gene057102 | MS.gene91268 | 0.816752 | 4.70E-52 | -1.69E-46 |
| MS.gene058279 | MS.gene91268 | 0.821007 | 5.08E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene91268 | 0.80003 | 1.75E-48 | -1.69E-46 |
| MS.gene058783 | MS.gene91268 | 0.806633 | 7.48E-50 | -1.69E-46 |
| MS.gene059686 | MS.gene91268 | 0.800457 | 1.43E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene91268 | -0.828621 | 8.12E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene91268 | 0.830167 | 3.42E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene91268 | 0.827961 | 1.17E-54 | -1.69E-46 |
| MS.gene061188 | MS.gene91268 | 0.808111 | 3.64E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91268.t1 | MTR_2g084475 | 96.886 | 835 | 25 | 1 | 1 | 834 | 1 | 835 | 0.0 | 1639 |
| MS.gene91268.t1 | MTR_2g084475 | 93.953 | 860 | 26 | 2 | 1 | 834 | 1 | 860 | 0.0 | 1622 |
| MS.gene91268.t1 | MTR_4g056600 | 55.227 | 880 | 285 | 18 | 1 | 834 | 1 | 817 | 0.0 | 787 |
| MS.gene91268.t1 | MTR_1g090803 | 49.727 | 366 | 150 | 8 | 475 | 834 | 513 | 850 | 9.30e-90 | 302 |
| MS.gene91268.t1 | MTR_1g090803 | 45.634 | 355 | 156 | 12 | 1 | 329 | 110 | 453 | 1.01e-65 | 236 |
| MS.gene91268.t1 | MTR_2g437720 | 40.157 | 127 | 62 | 3 | 708 | 832 | 798 | 912 | 1.54e-16 | 85.1 |
| MS.gene91268.t1 | MTR_4g094795 | 45.283 | 53 | 29 | 0 | 781 | 833 | 763 | 815 | 2.14e-13 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91268.t1 | AT2G27950 | 41.270 | 882 | 426 | 23 | 1 | 834 | 1 | 838 | 5.48e-167 | 505 |
| MS.gene91268.t1 | AT2G27950 | 41.270 | 882 | 426 | 23 | 1 | 834 | 1 | 838 | 5.48e-167 | 505 |
| MS.gene91268.t1 | AT2G27950 | 41.270 | 882 | 426 | 23 | 1 | 834 | 1 | 838 | 5.48e-167 | 505 |
| MS.gene91268.t1 | AT5G04460 | 52.273 | 308 | 120 | 5 | 534 | 834 | 575 | 862 | 6.21e-82 | 281 |
| MS.gene91268.t1 | AT5G04460 | 38.522 | 379 | 185 | 8 | 1 | 341 | 111 | 479 | 1.76e-50 | 191 |
| MS.gene91268.t1 | AT5G04460 | 52.273 | 308 | 120 | 5 | 534 | 834 | 575 | 862 | 6.21e-82 | 281 |
| MS.gene91268.t1 | AT5G04460 | 38.522 | 379 | 185 | 8 | 1 | 341 | 111 | 479 | 1.76e-50 | 191 |
| MS.gene91268.t1 | AT5G04460 | 52.273 | 308 | 120 | 5 | 534 | 834 | 575 | 862 | 6.21e-82 | 281 |
| MS.gene91268.t1 | AT5G04460 | 38.522 | 379 | 185 | 8 | 1 | 341 | 111 | 479 | 1.76e-50 | 191 |
| MS.gene91268.t1 | AT5G04460 | 52.273 | 308 | 120 | 5 | 534 | 834 | 575 | 862 | 6.21e-82 | 281 |
| MS.gene91268.t1 | AT5G04460 | 38.522 | 379 | 185 | 8 | 1 | 341 | 111 | 479 | 1.76e-50 | 191 |
| MS.gene91268.t1 | AT5G04460 | 49.270 | 274 | 106 | 7 | 534 | 797 | 575 | 825 | 4.31e-57 | 211 |
| MS.gene91268.t1 | AT5G04460 | 38.522 | 379 | 185 | 8 | 1 | 341 | 111 | 479 | 1.19e-50 | 191 |
| MS.gene91268.t1 | AT5G04460 | 38.522 | 379 | 185 | 8 | 1 | 341 | 111 | 479 | 7.29e-51 | 191 |
| MS.gene91268.t1 | AT5G04460 | 53.153 | 111 | 44 | 3 | 534 | 637 | 575 | 684 | 1.67e-21 | 100 |
| MS.gene91268.t1 | AT4G20160 | 30.526 | 285 | 113 | 7 | 585 | 832 | 974 | 1210 | 1.02e-27 | 121 |
| MS.gene91268.t1 | AT4G20160 | 30.526 | 285 | 113 | 7 | 585 | 832 | 972 | 1208 | 1.06e-27 | 121 |
| MS.gene91268.t1 | AT2G34920 | 29.317 | 249 | 117 | 8 | 585 | 832 | 471 | 661 | 1.81e-21 | 100 |
| MS.gene91268.t1 | AT1G30860 | 27.757 | 263 | 120 | 8 | 585 | 831 | 516 | 724 | 1.36e-17 | 88.2 |
| MS.gene91268.t1 | AT2G34920 | 28.112 | 249 | 106 | 8 | 585 | 832 | 471 | 647 | 1.53e-17 | 87.8 |
Find 215 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTTCTGTTGGGGAAAAT+AGG | 0.207901 | 2.3:-13592234 | MS.gene91268:CDS |
| ATGAACCAGTTGAGCGATTA+AGG | 0.209228 | 2.3:+13586352 | None:intergenic |
| TTCAAGAAGCTGTGGAAATT+TGG | 0.223448 | 2.3:-13587170 | MS.gene91268:CDS |
| TCTTCTTTCAACACTGATAT+TGG | 0.235947 | 2.3:+13587668 | None:intergenic |
| ACAATCAAAGCATAATAATA+AGG | 0.251249 | 2.3:-13587760 | MS.gene91268:CDS |
| CGTGAAAACTCCGCTGATAT+TGG | 0.264337 | 2.3:-13592442 | MS.gene91268:CDS |
| GGCTGCGAGGTGTTTCTGTT+GGG | 0.272621 | 2.3:-13592243 | MS.gene91268:CDS |
| GAAGAACAACCTGCTGAATT+TGG | 0.294372 | 2.3:-13592211 | MS.gene91268:CDS |
| CTGTACACGTTGTCATCTTC+TGG | 0.295335 | 2.3:+13587087 | None:intergenic |
| CCTGCCGACCACGTAATTTA+CGG | 0.301074 | 2.3:+13592143 | None:intergenic |
| GCTCACTTTGGCCTTCATTC+TGG | 0.301353 | 2.3:+13592185 | None:intergenic |
| GGATGAGTAACGGTGGTTCT+AGG | 0.302090 | 2.3:-13592378 | MS.gene91268:CDS |
| TATCATTGATAATGTAGATT+TGG | 0.306857 | 2.3:-13587433 | MS.gene91268:CDS |
| AGAAAGGACAATTTAGGTTA+TGG | 0.307487 | 2.3:-13587894 | MS.gene91268:CDS |
| GTTTGAGGGGTGAATTGCTT+GGG | 0.308492 | 2.3:-13592321 | MS.gene91268:CDS |
| TCCCCATCGCAATCGCATTC+AGG | 0.330274 | 2.3:-13592035 | MS.gene91268:intron |
| TTGGGAGGACCTTCTGATAA+TGG | 0.342875 | 2.3:-13587147 | MS.gene91268:CDS |
| CTTCAATTTGCAAGCTTTGT+TGG | 0.347154 | 2.3:+13587586 | None:intergenic |
| ATTATTATGCTTTGATTGTT+CGG | 0.351189 | 2.3:+13587764 | None:intergenic |
| GGAGAGGCAAAGAGAGGTTC+AGG | 0.351304 | 2.3:-13592089 | MS.gene91268:CDS |
| TCCATTGCAGAAAGTGAATT+AGG | 0.355700 | 2.3:-13591184 | MS.gene91268:CDS |
| TTACGATACTAACTCTTTCC+TGG | 0.362296 | 2.3:+13592290 | None:intergenic |
| TTTCCTCACACATTCCCATT+TGG | 0.364419 | 2.3:+13585964 | None:intergenic |
| TCACAGGAAGATGCAGGTTT+AGG | 0.368560 | 2.3:-13592553 | MS.gene91268:CDS |
| TGTTTCTGTTGGGGAAAATA+GGG | 0.369933 | 2.3:-13592233 | MS.gene91268:CDS |
| GCTCCAGTTGGTAGAATTCA+TGG | 0.374150 | 2.3:-13587120 | MS.gene91268:CDS |
| GAATTAGAAATGGCTGTTGC+TGG | 0.376248 | 2.3:-13592793 | None:intergenic |
| AACAGACTGTATCATGTCTA+AGG | 0.377837 | 2.3:-13591147 | MS.gene91268:intron |
| GACACACGCGTCATGACAAT+TGG | 0.382047 | 2.3:-13586696 | MS.gene91268:CDS |
| GATCCCTTCTCTGCTGCTCC+AGG | 0.382927 | 2.3:+13586803 | None:intergenic |
| TTCAATTTGCAAGCTTTGTT+GGG | 0.386899 | 2.3:+13587587 | None:intergenic |
| CGGCTGCGAGGTGTTTCTGT+TGG | 0.388140 | 2.3:-13592244 | MS.gene91268:CDS |
| GGTTTGAGGGGTGAATTGCT+TGG | 0.397231 | 2.3:-13592322 | MS.gene91268:CDS |
| GTCAATAGAATTGAACAAAC+TGG | 0.398877 | 2.3:-13587822 | MS.gene91268:CDS |
| TATTTGCAGGCCTTGCTTAG+AGG | 0.403936 | 2.3:-13591253 | MS.gene91268:intron |
| CCGTAAATTACGTGGTCGGC+AGG | 0.405141 | 2.3:-13592143 | MS.gene91268:CDS |
| GTATTGATTGTTTGTTGTAC+AGG | 0.413494 | 2.3:-13585913 | MS.gene91268:intron |
| GAAATTATTATTGAAAATGA+AGG | 0.413867 | 2.3:-13587375 | MS.gene91268:CDS |
| GGAACTGTGAATTCATTTGC+AGG | 0.419446 | 2.3:-13586640 | MS.gene91268:CDS |
| CAAGAAGATGGAGGAAGGGT+AGG | 0.427525 | 2.3:-13592703 | MS.gene91268:CDS |
| TCAGGAATTGTTGGAACGTC+GGG | 0.429307 | 2.3:-13592071 | MS.gene91268:CDS |
| TCCGCTGATATTGGAGAGGT+TGG | 0.436741 | 2.3:-13592433 | MS.gene91268:CDS |
| TTTGCTTGATATGGTTAAGA+AGG | 0.436800 | 2.3:-13592119 | MS.gene91268:CDS |
| TGCAGGCCTTGCTTAGAGGC+AGG | 0.437518 | 2.3:-13591249 | MS.gene91268:intron |
| ACAATACCATCCGAAGATAC+TGG | 0.438061 | 2.3:-13587621 | MS.gene91268:CDS |
| GTCGAGGGAATAGTGGTTTG+AGG | 0.448929 | 2.3:-13592336 | MS.gene91268:CDS |
| AATGGGAATGTGTGAGGAAA+GGG | 0.449333 | 2.3:-13585961 | MS.gene91268:CDS |
| TCGAGGGAATAGTGGTTTGA+GGG | 0.450660 | 2.3:-13592335 | MS.gene91268:CDS |
| GAGAATGCTAGAGGCTTGTA+TGG | 0.451718 | 2.3:-13586424 | MS.gene91268:CDS |
| CAATCAAAGCATAATAATAA+GGG | 0.452719 | 2.3:-13587759 | MS.gene91268:CDS |
| AGTGGAGCGGTTATTATCAA+TGG | 0.453138 | 2.3:+13591207 | None:intergenic |
| AATCGCTCAACTGGTTCATC+AGG | 0.454746 | 2.3:-13586348 | MS.gene91268:intron |
| TGAATGGCCTCAAAACATCT+TGG | 0.454809 | 2.3:-13587268 | MS.gene91268:CDS |
| TTCACTTTCTGCAATGGAAG+TGG | 0.456514 | 2.3:+13591189 | None:intergenic |
| AATCCATGAATTCTACCAAC+TGG | 0.459048 | 2.3:+13587117 | None:intergenic |
| AGTTAGTATCGTAAGGGAAT+GGG | 0.462415 | 2.3:-13592281 | MS.gene91268:CDS |
| TCTCTCGCCACATTTGCAAA+AGG | 0.463099 | 2.3:+13592665 | None:intergenic |
| GAATGGCCTCAAAACATCTT+GGG | 0.463646 | 2.3:-13587267 | MS.gene91268:CDS |
| CATTCCCATTTGGATTCGTC+CGG | 0.464323 | 2.3:+13585974 | None:intergenic |
| GAGGAGGTGGTGGTAAAGGC+AGG | 0.465098 | 2.3:+13586740 | None:intergenic |
| GAATGGGTCTCAATATGAAC+AGG | 0.465709 | 2.3:-13592491 | MS.gene91268:CDS |
| AAGGTTGTTACCAGTATCTT+CGG | 0.468073 | 2.3:+13587611 | None:intergenic |
| AGAAGCTGTGGAAATTTGGT+TGG | 0.468705 | 2.3:-13587166 | MS.gene91268:CDS |
| CTCCAGGTCTTGTTCTGTTG+AGG | 0.470243 | 2.3:+13586819 | None:intergenic |
| TTTCACCGGACGAATCCAAA+TGG | 0.473818 | 2.3:-13585979 | MS.gene91268:CDS |
| GCAGCCCTTAATCGCTCAAC+TGG | 0.478571 | 2.3:-13586357 | MS.gene91268:CDS |
| TTTGCAAGCTTTGTTGGGTA+AGG | 0.480292 | 2.3:+13587592 | None:intergenic |
| ACTTGAGAATTGACATGGTT+AGG | 0.480676 | 2.3:-13586473 | MS.gene91268:CDS |
| TCTCTGCGGGGTGATATAAC+TGG | 0.481455 | 2.3:-13587501 | MS.gene91268:CDS |
| GCCTAATTCACTTTCTGCAA+TGG | 0.485192 | 2.3:+13591183 | None:intergenic |
| GAGTTAGTATCGTAAGGGAA+TGG | 0.485239 | 2.3:-13592282 | MS.gene91268:CDS |
| AAGACCTGGAGCAGCAGAGA+AGG | 0.487667 | 2.3:-13586807 | MS.gene91268:CDS |
| AATATTAGTCGAGGGAATAG+TGG | 0.492360 | 2.3:-13592343 | MS.gene91268:CDS |
| TTCTGGTTACCAAATTCAGC+AGG | 0.492610 | 2.3:+13592202 | None:intergenic |
| CTCTCGCCACATTTGCAAAA+GGG | 0.493047 | 2.3:+13592666 | None:intergenic |
| AAGAGAGGTTCAGGAATTGT+TGG | 0.493849 | 2.3:-13592080 | MS.gene91268:CDS |
| AACCTGAATGCGATTGCGAT+GGG | 0.493922 | 2.3:+13592033 | None:intergenic |
| GATGAGTAACGGTGGTTCTA+GGG | 0.495364 | 2.3:-13592377 | MS.gene91268:CDS |
| TGAACCAGTTGAGCGATTAA+GGG | 0.496395 | 2.3:+13586353 | None:intergenic |
| AACATCTTGGGAAATGATGA+TGG | 0.498026 | 2.3:-13587255 | MS.gene91268:CDS |
| CAACATATGATTGTATCAGC+TGG | 0.498295 | 2.3:+13586902 | None:intergenic |
| GAAGCTGTGGAAATTTGGTT+GGG | 0.499555 | 2.3:-13587165 | MS.gene91268:CDS |
| AGATGAGCACATGGTGAGGC+AGG | 0.501135 | 2.3:-13592638 | MS.gene91268:CDS |
| CACAGTCGCAAAGTCAGAAT+GGG | 0.501596 | 2.3:-13592507 | MS.gene91268:CDS |
| CACATGGTGAGGCAGGTTCA+AGG | 0.501915 | 2.3:-13592631 | MS.gene91268:CDS |
| AGGAAAGAGTTAGTATCGTA+AGG | 0.502662 | 2.3:-13592288 | MS.gene91268:CDS |
| TGTTCTGTTGAGGATGAAGA+AGG | 0.507086 | 2.3:+13586829 | None:intergenic |
| CACGAAAACTGCTGCGTAGG+AGG | 0.507329 | 2.3:+13586935 | None:intergenic |
| GTCTCAATATGAACAGGATC+AGG | 0.510211 | 2.3:-13592485 | MS.gene91268:CDS |
| TTTGAGGGGTGAATTGCTTG+GGG | 0.511627 | 2.3:-13592320 | MS.gene91268:CDS |
| AAACCTGCATCTTCCTGTGA+TGG | 0.512662 | 2.3:+13592556 | None:intergenic |
| AACCTGCATCTTCCTGTGAT+GGG | 0.513929 | 2.3:+13592557 | None:intergenic |
| AAGCTTGCAAATTGAAGTTA+CGG | 0.514543 | 2.3:-13587580 | MS.gene91268:CDS |
| ACATACTGAGGAGTCTCTGC+GGG | 0.517661 | 2.3:-13587514 | MS.gene91268:CDS |
| TCAACAAAGGAGTGAGGGGT+TGG | 0.520982 | 2.3:-13592587 | MS.gene91268:CDS |
| TCACAGTCGCAAAGTCAGAA+TGG | 0.526317 | 2.3:-13592508 | MS.gene91268:CDS |
| AGGTTGGGAGGGAAAGAGTG+AGG | 0.528886 | 2.3:-13592417 | MS.gene91268:CDS |
| AAGGTCATGCTCACGTTGAG+TGG | 0.529688 | 2.3:-13586873 | MS.gene91268:CDS |
| AATAAGGGATGTGATAGACT+TGG | 0.529741 | 2.3:-13587744 | MS.gene91268:CDS |
| TCAGTAGCACATCAAATGAA+TGG | 0.533870 | 2.3:-13587284 | MS.gene91268:CDS |
| CCGCTGATATTGGAGAGGTT+GGG | 0.535652 | 2.3:-13592432 | MS.gene91268:CDS |
| TTGAAAATGAAGGAAATGAC+TGG | 0.536188 | 2.3:-13587365 | MS.gene91268:CDS |
| AGTGCACAATGCAGCGGTGT+TGG | 0.536676 | 2.3:-13592770 | MS.gene91268:CDS |
| GCTGCGAGGTGTTTCTGTTG+GGG | 0.538607 | 2.3:-13592242 | MS.gene91268:CDS |
| GTGGAGCGGTTATTATCAAT+GGG | 0.540808 | 2.3:+13591208 | None:intergenic |
| TCTGAAGTGTGGCAAGAAGA+TGG | 0.542390 | 2.3:-13587198 | MS.gene91268:CDS |
| TTCGTGATATATGCTCACTT+TGG | 0.542517 | 2.3:+13592173 | None:intergenic |
| GCACGAATCACTTCCACCAC+TGG | 0.543883 | 2.3:+13585730 | None:intergenic |
| ATCTTCTTGCCACACTTCAG+AGG | 0.546132 | 2.3:+13587200 | None:intergenic |
| ATCAGTGTTGAAAGAAGAGA+TGG | 0.546523 | 2.3:-13587663 | MS.gene91268:CDS |
| CCTCCATCTTCTTGCCTCCG+TGG | 0.546633 | 2.3:+13592712 | None:intergenic |
| TCGCCACGGAGGCAAGAAGA+TGG | 0.547564 | 2.3:-13592715 | MS.gene91268:CDS |
| ACCACTGGTGCTCGACACAT+TGG | 0.550193 | 2.3:+13585745 | None:intergenic |
| ATAAGGGATGTGATAGACTT+GGG | 0.551724 | 2.3:-13587743 | MS.gene91268:CDS |
| CAACAGAAACACCTCGCAGC+CGG | 0.553987 | 2.3:+13592245 | None:intergenic |
| GTATGGAGTACATCAGCTAA+AGG | 0.557111 | 2.3:+13586604 | None:intergenic |
| AAACCTGAATGCGATTGCGA+TGG | 0.557623 | 2.3:+13592032 | None:intergenic |
| TGGATTCGTCCGGTGAAACA+TGG | 0.561208 | 2.3:+13585984 | None:intergenic |
| TTCAGGAATTGTTGGAACGT+CGG | 0.561543 | 2.3:-13592072 | MS.gene91268:CDS |
| ATCCTCAACAGAACAAGACC+TGG | 0.564246 | 2.3:-13586821 | MS.gene91268:CDS |
| CTTTGCTGTATATGCTGCGA+AGG | 0.564715 | 2.3:-13585938 | MS.gene91268:CDS |
| TTCACCGGACGAATCCAAAT+GGG | 0.566727 | 2.3:-13585978 | MS.gene91268:CDS |
| TTGAGGGGTGAATTGCTTGG+GGG | 0.569955 | 2.3:-13592319 | MS.gene91268:CDS |
| AATGGGTAGAGACGAGTAGC+CGG | 0.570435 | 2.3:-13592264 | MS.gene91268:CDS |
| TGATACAATCATATGTTGAA+AGG | 0.570882 | 2.3:-13586897 | MS.gene91268:CDS |
| TGTCGATCCCATAGAGGCAG+AGG | 0.571355 | 2.3:+13586715 | None:intergenic |
| GAATTTGGTAACCAGAATGA+AGG | 0.572816 | 2.3:-13592196 | MS.gene91268:CDS |
| TTAGTTCAACAAAGGAGTGA+GGG | 0.573155 | 2.3:-13592592 | MS.gene91268:CDS |
| GACCCATCACAGGAAGATGC+AGG | 0.574405 | 2.3:-13592559 | MS.gene91268:CDS |
| CAAATGAATTCACAGTTCCT+CGG | 0.574829 | 2.3:+13586644 | None:intergenic |
| CTGATATTGGAGAGGTTGGG+AGG | 0.575094 | 2.3:-13592429 | MS.gene91268:CDS |
| CAGTGACTTGAGAATTGACA+TGG | 0.575678 | 2.3:-13586478 | MS.gene91268:CDS |
| ATGGAGGAAGGGTAGGTGGA+CGG | 0.575718 | 2.3:-13592696 | MS.gene91268:CDS |
| ACGTGTACAGTGTTGAACTC+AGG | 0.576543 | 2.3:-13587074 | MS.gene91268:CDS |
| AAATGGGAATGTGTGAGGAA+AGG | 0.579254 | 2.3:-13585962 | MS.gene91268:CDS |
| GAAGATGGAGGAAGGGTAGG+TGG | 0.579323 | 2.3:-13592700 | MS.gene91268:CDS |
| TGTCAGATGAGGTATCAGAT+AGG | 0.579413 | 2.3:+13587856 | None:intergenic |
| GGCATCAAACTAACATTGAG+TGG | 0.580390 | 2.3:-13587344 | MS.gene91268:CDS |
| GACAATTGGACACAGCAGAA+TGG | 0.580821 | 2.3:-13586682 | MS.gene91268:CDS |
| AGACCTGGAGCAGCAGAGAA+GGG | 0.581371 | 2.3:-13586806 | MS.gene91268:CDS |
| TATGGTTAAGAAGGCTGTGA+TGG | 0.583364 | 2.3:-13592110 | MS.gene91268:CDS |
| GTTCTGTTGAGGATGAAGAA+GGG | 0.584199 | 2.3:+13586830 | None:intergenic |
| CGTGTACAGTGTTGAACTCA+GGG | 0.584425 | 2.3:-13587073 | MS.gene91268:CDS |
| TTTCACGAAAACTGCTGCGT+AGG | 0.585636 | 2.3:+13586932 | None:intergenic |
| AACTCAGGGAACTGCTAAGT+AGG | 0.586397 | 2.3:-13587059 | MS.gene91268:intron |
| GGAAAGAGTTAGTATCGTAA+GGG | 0.586833 | 2.3:-13592287 | MS.gene91268:CDS |
| AATCACAACAATCGTGCAGA+GGG | 0.588838 | 2.3:-13587459 | MS.gene91268:CDS |
| TTCAGGGGATGGATGAGTAA+CGG | 0.588854 | 2.3:-13592388 | MS.gene91268:CDS |
| CAATCATATGTTGAAAGGCA+AGG | 0.589141 | 2.3:-13586892 | MS.gene91268:CDS |
| TCATGCTCACGTTGAGTGGG+AGG | 0.590987 | 2.3:-13586869 | MS.gene91268:CDS |
| TCAAACTAACATTGAGTGGA+GGG | 0.591091 | 2.3:-13587340 | MS.gene91268:CDS |
| GGAGGCAAGAAGATGGAGGA+AGG | 0.592581 | 2.3:-13592708 | MS.gene91268:CDS |
| AGTACATGACCATGTTTCAC+CGG | 0.594079 | 2.3:-13585993 | MS.gene91268:CDS |
| AGGTCATGCTCACGTTGAGT+GGG | 0.594096 | 2.3:-13586872 | MS.gene91268:CDS |
| TCCTCAGTATGTATCTCACT+TGG | 0.596830 | 2.3:+13587525 | None:intergenic |
| ACTGAGAATGAGACTCCCTC+AGG | 0.598170 | 2.3:+13592737 | None:intergenic |
| TGAGTGGAGGGATAGTACTC+AGG | 0.598200 | 2.3:-13587328 | MS.gene91268:CDS |
| TGGCAGCTTTCAAGAAGCTG+TGG | 0.600306 | 2.3:-13587178 | MS.gene91268:CDS |
| GCTGTGGAAATTTGGTTGGG+AGG | 0.601284 | 2.3:-13587162 | MS.gene91268:CDS |
| GGATAGTACTCAGGAAAGTG+TGG | 0.604086 | 2.3:-13587319 | MS.gene91268:CDS |
| TTGTTACCAGTATCTTCGGA+TGG | 0.604481 | 2.3:+13587615 | None:intergenic |
| TCCAATGTGTCGAGCACCAG+TGG | 0.609563 | 2.3:-13585746 | MS.gene91268:CDS |
| ATCAATCTCACTGTCAGATG+AGG | 0.612417 | 2.3:+13587845 | None:intergenic |
| TTCTGTTGAGGATGAAGAAG+GGG | 0.614180 | 2.3:+13586831 | None:intergenic |
| CGTGCATCAAATATTAGTCG+AGG | 0.614906 | 2.3:-13592352 | MS.gene91268:CDS |
| ATTAGTTCAACAAAGGAGTG+AGG | 0.615573 | 2.3:-13592593 | MS.gene91268:CDS |
| AATGTGTCGAGCACCAGTGG+TGG | 0.619059 | 2.3:-13585743 | MS.gene91268:CDS |
| CGAGGGAATAGTGGTTTGAG+GGG | 0.619379 | 2.3:-13592334 | MS.gene91268:CDS |
| ATCAAACTAACATTGAGTGG+AGG | 0.620163 | 2.3:-13587341 | MS.gene91268:CDS |
| GAGGCAAGAAGATGGAGGAA+GGG | 0.620576 | 2.3:-13592707 | MS.gene91268:CDS |
| GTTGGTTGTAGACCCATCAC+AGG | 0.622985 | 2.3:-13592569 | MS.gene91268:CDS |
| TTGAAGATGAGCACATGGTG+AGG | 0.624609 | 2.3:-13592642 | MS.gene91268:CDS |
| ATGAAGTATTAGTTCAACAA+AGG | 0.624893 | 2.3:-13592600 | MS.gene91268:CDS |
| GGAGCTGCTCCATTATCAGA+AGG | 0.625639 | 2.3:+13587138 | None:intergenic |
| TAGTTCAACAAAGGAGTGAG+GGG | 0.628420 | 2.3:-13592591 | MS.gene91268:CDS |
| GATAATGGAGCAGCTCCAGT+TGG | 0.629690 | 2.3:-13587132 | MS.gene91268:CDS |
| ACATGGTTAGGCTACAACAA+AGG | 0.629937 | 2.3:-13586461 | MS.gene91268:CDS |
| TTAAGAAGGCTGTGATGGAG+AGG | 0.631074 | 2.3:-13592105 | MS.gene91268:CDS |
| TGTTGGAGACTAATTTCCTG+AGG | 0.631446 | 2.3:-13592753 | MS.gene91268:CDS |
| AAGTTCACAAGTAGTCGCCT+CGG | 0.632140 | 2.3:-13587793 | MS.gene91268:CDS |
| CGATCCCATAGAGGCAGAGG+GGG | 0.632692 | 2.3:+13586718 | None:intergenic |
| GTCGATCCCATAGAGGCAGA+GGG | 0.636451 | 2.3:+13586716 | None:intergenic |
| TGTGATGGAGAGGCAAAGAG+AGG | 0.636927 | 2.3:-13592095 | MS.gene91268:CDS |
| GTTGGAGACTAATTTCCTGA+GGG | 0.638030 | 2.3:-13592752 | MS.gene91268:CDS |
| ACCTGAATGCGATTGCGATG+GGG | 0.639757 | 2.3:+13592034 | None:intergenic |
| AGTCTCATTCTCAGTCGCCA+CGG | 0.640444 | 2.3:-13592729 | MS.gene91268:CDS |
| TGATTGTTCGGAATGTACCG+AGG | 0.641893 | 2.3:+13587776 | None:intergenic |
| AAGTAGCAGCCTCTGAAGTG+TGG | 0.643446 | 2.3:-13587209 | MS.gene91268:CDS |
| AAGGGATCAAATTGTTGACA+CGG | 0.644459 | 2.3:-13586788 | MS.gene91268:CDS |
| TCAATATGAACAGGATCAGG+AGG | 0.644694 | 2.3:-13592482 | MS.gene91268:CDS |
| CCCAACCTCTCCAATATCAG+CGG | 0.644993 | 2.3:+13592432 | None:intergenic |
| GGCATAAACAATCAGCGCCG+AGG | 0.646462 | 2.3:-13586661 | MS.gene91268:CDS |
| TGATATTGGAGAGGTTGGGA+GGG | 0.647379 | 2.3:-13592428 | MS.gene91268:CDS |
| GAATCCGTAAATTACGTGGT+CGG | 0.648953 | 2.3:-13592147 | MS.gene91268:CDS |
| AGAGATTGAAGATGAGCACA+TGG | 0.649676 | 2.3:-13592647 | MS.gene91268:CDS |
| CCACGGAGGCAAGAAGATGG+AGG | 0.651630 | 2.3:-13592712 | MS.gene91268:CDS |
| AAATCACAACAATCGTGCAG+AGG | 0.654542 | 2.3:-13587460 | MS.gene91268:CDS |
| TACATACTGAGGAGTCTCTG+CGG | 0.654648 | 2.3:-13587515 | MS.gene91268:CDS |
| GTGCATCAAATATTAGTCGA+GGG | 0.654764 | 2.3:-13592351 | MS.gene91268:CDS |
| AATCCAAATGGGAATGTGTG+AGG | 0.657046 | 2.3:-13585967 | MS.gene91268:CDS |
| TAATATGCAGAGAATGCTAG+AGG | 0.662885 | 2.3:-13586433 | MS.gene91268:CDS |
| TGCTGGAGTGCACAATGCAG+CGG | 0.663912 | 2.3:-13592776 | MS.gene91268:CDS |
| TTTCTGCAATGGAAGTGGAG+CGG | 0.671672 | 2.3:+13591194 | None:intergenic |
| CGCGTGTGTCGATCCCATAG+AGG | 0.682787 | 2.3:+13586709 | None:intergenic |
| GTGAGAATGAATCTGAAACA+TGG | 0.686074 | 2.3:-13592531 | MS.gene91268:CDS |
| GTACATCAGCTAAAGGAAAG+CGG | 0.696083 | 2.3:+13586611 | None:intergenic |
| AAACTCCGCTGATATTGGAG+AGG | 0.697357 | 2.3:-13592437 | MS.gene91268:CDS |
| CTCATTCTCAGTCGCCACGG+AGG | 0.697699 | 2.3:-13592726 | MS.gene91268:CDS |
| GAGACGAGTAGCCGGCTGCG+AGG | 0.704800 | 2.3:-13592256 | MS.gene91268:CDS |
| AGGGGATGGATGAGTAACGG+TGG | 0.715309 | 2.3:-13592385 | MS.gene91268:CDS |
| AGAAGAATCCGTAAATTACG+TGG | 0.722572 | 2.3:-13592151 | MS.gene91268:CDS |
| ACCAAGTGAGATACATACTG+AGG | 0.725998 | 2.3:-13587526 | MS.gene91268:CDS |
| CATACTGAGGAGTCTCTGCG+GGG | 0.729967 | 2.3:-13587513 | MS.gene91268:CDS |
| TCGATCCCATAGAGGCAGAG+GGG | 0.731940 | 2.3:+13586717 | None:intergenic |
| GGATCAAATTGTTGACACGG+AGG | 0.754183 | 2.3:-13586785 | MS.gene91268:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 13585717 | 13592806 | 13585717 | ID=MS.gene91268 |
| chr2.3 | mRNA | 13585717 | 13592806 | 13585717 | ID=MS.gene91268.t1;Parent=MS.gene91268 |
| chr2.3 | exon | 13592036 | 13592806 | 13592036 | ID=MS.gene91268.t1.exon1;Parent=MS.gene91268.t1 |
| chr2.3 | CDS | 13592036 | 13592806 | 13592036 | ID=cds.MS.gene91268.t1;Parent=MS.gene91268.t1 |
| chr2.3 | exon | 13591148 | 13591266 | 13591148 | ID=MS.gene91268.t1.exon2;Parent=MS.gene91268.t1 |
| chr2.3 | CDS | 13591148 | 13591266 | 13591148 | ID=cds.MS.gene91268.t1;Parent=MS.gene91268.t1 |
| chr2.3 | exon | 13587060 | 13587932 | 13587060 | ID=MS.gene91268.t1.exon3;Parent=MS.gene91268.t1 |
| chr2.3 | CDS | 13587060 | 13587932 | 13587060 | ID=cds.MS.gene91268.t1;Parent=MS.gene91268.t1 |
| chr2.3 | exon | 13586615 | 13586972 | 13586615 | ID=MS.gene91268.t1.exon4;Parent=MS.gene91268.t1 |
| chr2.3 | CDS | 13586615 | 13586972 | 13586615 | ID=cds.MS.gene91268.t1;Parent=MS.gene91268.t1 |
| chr2.3 | exon | 13586349 | 13586514 | 13586349 | ID=MS.gene91268.t1.exon5;Parent=MS.gene91268.t1 |
| chr2.3 | CDS | 13586349 | 13586514 | 13586349 | ID=cds.MS.gene91268.t1;Parent=MS.gene91268.t1 |
| chr2.3 | exon | 13585914 | 13586016 | 13585914 | ID=MS.gene91268.t1.exon6;Parent=MS.gene91268.t1 |
| chr2.3 | CDS | 13585914 | 13586016 | 13585914 | ID=cds.MS.gene91268.t1;Parent=MS.gene91268.t1 |
| chr2.3 | exon | 13585717 | 13585831 | 13585717 | ID=MS.gene91268.t1.exon7;Parent=MS.gene91268.t1 |
| chr2.3 | CDS | 13585717 | 13585831 | 13585717 | ID=cds.MS.gene91268.t1;Parent=MS.gene91268.t1 |
| Gene Sequence |
| Protein sequence |
