Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91411.t1 | XP_003592476.2 | 99.1 | 321 | 2 | 1 | 1 | 320 | 1 | 321 | 1.80E-169 | 605.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91411.t1 | B6ZJZ9 | 70.4 | 318 | 92 | 2 | 1 | 318 | 1 | 316 | 4.3e-119 | 429.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91411.t1 | G7IE57 | 99.1 | 321 | 2 | 1 | 1 | 320 | 1 | 321 | 1.3e-169 | 605.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene91411 | 0.808903 | 2.46E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene91411 | 0.821357 | 4.21E-53 | -1.69E-46 |
| MS.gene049805 | MS.gene91411 | 0.813517 | 2.46E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene91411 | 0.834015 | 3.83E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene91411 | 0.812736 | 3.65E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene91411 | 0.800661 | 1.30E-48 | -1.69E-46 |
| MS.gene050772 | MS.gene91411 | 0.801504 | 8.73E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene91411 | 0.811063 | 8.44E-51 | -1.69E-46 |
| MS.gene051387 | MS.gene91411 | 0.82777 | 1.30E-54 | -1.69E-46 |
| MS.gene051694 | MS.gene91411 | 0.801924 | 7.16E-49 | -1.69E-46 |
| MS.gene052501 | MS.gene91411 | 0.805533 | 1.28E-49 | -1.69E-46 |
| MS.gene052505 | MS.gene91411 | 0.810194 | 1.30E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene91411 | 0.80608 | 9.79E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene91411 | 0.808304 | 3.31E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene91411 | 0.800732 | 1.26E-48 | -1.69E-46 |
| MS.gene056511 | MS.gene91411 | 0.81567 | 8.21E-52 | -1.69E-46 |
| MS.gene057856 | MS.gene91411 | 0.818859 | 1.57E-52 | -1.69E-46 |
| MS.gene058376 | MS.gene91411 | 0.819847 | 9.37E-53 | -1.69E-46 |
| MS.gene059801 | MS.gene91411 | 0.801983 | 6.96E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene91411 | 0.810677 | 1.02E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene91411 | 0.814555 | 1.45E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91411.t1 | MTR_1g105410 | 99.065 | 321 | 2 | 1 | 1 | 320 | 1 | 321 | 0.0 | 645 |
| MS.gene91411.t1 | MTR_5g039730 | 69.032 | 310 | 94 | 2 | 1 | 310 | 1 | 308 | 1.52e-151 | 428 |
| MS.gene91411.t1 | MTR_7g039810 | 68.199 | 261 | 81 | 2 | 1 | 261 | 1 | 259 | 1.37e-122 | 352 |
| MS.gene91411.t1 | MTR_7g445250 | 67.816 | 261 | 82 | 2 | 1 | 261 | 1 | 259 | 6.06e-122 | 350 |
| MS.gene91411.t1 | MTR_5g081910 | 26.899 | 316 | 182 | 6 | 24 | 303 | 21 | 323 | 2.46e-27 | 109 |
| MS.gene91411.t1 | MTR_5g081910 | 28.326 | 233 | 126 | 4 | 99 | 303 | 30 | 249 | 9.52e-23 | 95.5 |
| MS.gene91411.t1 | MTR_7g445270 | 72.000 | 50 | 14 | 0 | 1 | 50 | 1 | 50 | 1.86e-19 | 80.9 |
| MS.gene91411.t1 | MTR_8g076760 | 23.860 | 285 | 196 | 7 | 25 | 297 | 28 | 303 | 4.54e-19 | 86.3 |
| MS.gene91411.t1 | MTR_8g096050 | 29.097 | 299 | 173 | 13 | 13 | 298 | 229 | 501 | 1.32e-18 | 86.7 |
| MS.gene91411.t1 | MTR_1g036280 | 24.198 | 343 | 185 | 10 | 26 | 302 | 25 | 358 | 2.15e-17 | 82.4 |
| MS.gene91411.t1 | MTR_7g109135 | 25.000 | 304 | 196 | 8 | 8 | 297 | 19 | 304 | 8.55e-14 | 71.2 |
| MS.gene91411.t1 | MTR_7g109135 | 24.232 | 293 | 205 | 6 | 8 | 297 | 19 | 297 | 2.66e-13 | 69.7 |
| MS.gene91411.t1 | MTR_3g104500 | 21.895 | 306 | 189 | 12 | 13 | 293 | 36 | 316 | 1.23e-12 | 67.8 |
| MS.gene91411.t1 | MTR_7g084400 | 27.181 | 298 | 177 | 14 | 13 | 298 | 215 | 484 | 2.04e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91411.t1 | AT3G05290 | 69.903 | 309 | 91 | 2 | 1 | 308 | 1 | 308 | 8.71e-159 | 446 |
| MS.gene91411.t1 | AT5G27520 | 69.551 | 312 | 91 | 3 | 1 | 310 | 3 | 312 | 1.41e-156 | 441 |
| MS.gene91411.t1 | AT2G39970 | 24.522 | 314 | 190 | 6 | 26 | 303 | 23 | 325 | 4.81e-26 | 105 |
| MS.gene91411.t1 | AT5G66380 | 23.411 | 299 | 209 | 6 | 10 | 297 | 9 | 298 | 1.61e-19 | 87.8 |
| MS.gene91411.t1 | AT5G07320 | 27.178 | 287 | 172 | 13 | 20 | 298 | 218 | 475 | 1.94e-12 | 68.2 |
| MS.gene91411.t1 | AT4G32400 | 22.667 | 300 | 197 | 8 | 7 | 297 | 110 | 383 | 2.19e-12 | 67.8 |
Find 70 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAAGATGCTTTCAATT+TGG | 0.135005 | 1.3:-71807954 | None:intergenic |
| CTACTTTAAGAGACTATATT+TGG | 0.166458 | 1.3:+71806484 | MS.gene91411:CDS |
| CTGGAGCACTCTATACTATT+TGG | 0.239300 | 1.3:+71807774 | MS.gene91411:CDS |
| ATTCAAGATGCTTTCAATTT+GGG | 0.243894 | 1.3:-71807953 | None:intergenic |
| TTGAACTTCAGCTTGATATT+TGG | 0.253052 | 1.3:-71805445 | None:intergenic |
| TCGTCGTTTATTTATTTCTA+TGG | 0.253599 | 1.3:+71806455 | MS.gene91411:CDS |
| AGGATGCAGACAAGTGAATT+TGG | 0.266292 | 1.3:+71807036 | MS.gene91411:CDS |
| AACAACAAACCCATCTATTC+AGG | 0.272652 | 1.3:+71807140 | MS.gene91411:CDS |
| CCTTGAGGATGCTGTATCTA+AGG | 0.273262 | 1.3:-71807016 | None:intergenic |
| TCATTGTCTGAAGCTACTTC+TGG | 0.274841 | 1.3:+71805366 | MS.gene91411:CDS |
| CTTTCATTGTACCAAGGCTT+GGG | 0.297703 | 1.3:+71806407 | MS.gene91411:CDS |
| GAGAAAGCAGAAAGTGATTC+CGG | 0.301391 | 1.3:-71807350 | None:intergenic |
| AAGAGTGATACCTGAATAGA+TGG | 0.321223 | 1.3:-71807150 | None:intergenic |
| TGTTGTTAAAAGAATAGATA+TGG | 0.354667 | 1.3:-71807124 | None:intergenic |
| GAAGCTACTTCTGGGGCTAT+TGG | 0.386853 | 1.3:+71805375 | MS.gene91411:CDS |
| GCTTGACATACCCAGCTATC+AGG | 0.393298 | 1.3:+71807414 | MS.gene91411:CDS |
| TAGGTGTAAAGTCACTATTC+AGG | 0.395494 | 1.3:+71807691 | MS.gene91411:intron |
| TTGATAATCCACCTGATAGC+TGG | 0.413991 | 1.3:-71807425 | None:intergenic |
| TGGAAAAGAGAAGGCCTCTT+GGG | 0.439214 | 1.3:+71807794 | MS.gene91411:CDS |
| GCTTTCATTGTACCAAGGCT+TGG | 0.441061 | 1.3:+71806406 | MS.gene91411:CDS |
| CATTGTCTGAAGCTACTTCT+GGG | 0.446171 | 1.3:+71805367 | MS.gene91411:CDS |
| TGGATTCTGATGCTCATCAT+TGG | 0.448309 | 1.3:+71807908 | MS.gene91411:CDS |
| TTGATTGCCGCTACTATGTC+CGG | 0.467353 | 1.3:+71806545 | MS.gene91411:CDS |
| AGAAAGCAGAAAGTGATTCC+GGG | 0.471336 | 1.3:-71807349 | None:intergenic |
| TTGGAAAAGAGAAGGCCTCT+TGG | 0.475034 | 1.3:+71807793 | MS.gene91411:CDS |
| AAGGCGCAGAGGACAATCTC+TGG | 0.476185 | 1.3:+71807755 | MS.gene91411:CDS |
| GCTGAAACACAGACTACTAA+AGG | 0.477004 | 1.3:+71807292 | MS.gene91411:CDS |
| ATAAATAAACGACGAAATGA+AGG | 0.484849 | 1.3:-71806447 | None:intergenic |
| ACCTGGAGTGATGCATTTGA+TGG | 0.490024 | 1.3:+71807096 | MS.gene91411:CDS |
| CAGCTCTGCATTACTTCTGA+TGG | 0.493278 | 1.3:+71807859 | MS.gene91411:CDS |
| AGACCTTATCAGAGGGTACC+TGG | 0.496284 | 1.3:+71807079 | MS.gene91411:CDS |
| ACTCCAGGTACCCTCTGATA+AGG | 0.497971 | 1.3:-71807082 | None:intergenic |
| TTGGAAAATCCAAGGGACTC+TGG | 0.499445 | 1.3:+71807055 | MS.gene91411:CDS |
| CTGAAACACAGACTACTAAA+GGG | 0.499748 | 1.3:+71807293 | MS.gene91411:CDS |
| GGAAGCAATTTCTAAACGTC+AGG | 0.508035 | 1.3:+71806382 | MS.gene91411:CDS |
| TAAGGTCTGCCAGAGTCCCT+TGG | 0.511250 | 1.3:-71807064 | None:intergenic |
| GAGTACAGAAGCTGAAAAGA+AGG | 0.511723 | 1.3:+71807736 | MS.gene91411:CDS |
| CCAGCCATCAAAGAAAATAC+AGG | 0.513015 | 1.3:+71805469 | MS.gene91411:CDS |
| ACAAGACGGTGGTGCTAACA+AGG | 0.523486 | 1.3:-71805401 | None:intergenic |
| TTCCGGGGATGACTTTGCAT+CGG | 0.531292 | 1.3:-71807333 | None:intergenic |
| TGCATTACTTCTGATGGTAA+AGG | 0.540385 | 1.3:+71807865 | MS.gene91411:CDS |
| TAAACGACGAAATGAAGGAT+TGG | 0.543647 | 1.3:-71806442 | None:intergenic |
| TTCAAGATGCTTTCAATTTG+GGG | 0.544526 | 1.3:-71807952 | None:intergenic |
| CAAGATGCTTTCAATTTGGG+GGG | 0.545334 | 1.3:-71807950 | None:intergenic |
| CTTGAGGATGCTGTATCTAA+GGG | 0.556289 | 1.3:-71807015 | None:intergenic |
| AAAAGTGGAAACAAGAACAT+TGG | 0.557206 | 1.3:+71806509 | MS.gene91411:CDS |
| TTCACTTGTCTGCATCCTTG+AGG | 0.559298 | 1.3:-71807031 | None:intergenic |
| AAGTGAATTTGGAAAATCCA+AGG | 0.561327 | 1.3:+71807047 | MS.gene91411:CDS |
| AACCGATGCAAAGTCATCCC+CGG | 0.568341 | 1.3:+71807331 | MS.gene91411:CDS |
| ACCATCAAATGCATCACTCC+AGG | 0.576816 | 1.3:-71807097 | None:intergenic |
| TGATAATCCACCTGATAGCT+GGG | 0.581837 | 1.3:-71807424 | None:intergenic |
| TATACTATTTGGAAAAGAGA+AGG | 0.590261 | 1.3:+71807785 | MS.gene91411:CDS |
| TTTCATTGTACCAAGGCTTG+GGG | 0.595728 | 1.3:+71806408 | MS.gene91411:CDS |
| TCAAGATGCTTTCAATTTGG+GGG | 0.597677 | 1.3:-71807951 | None:intergenic |
| CCTTAGATACAGCATCCTCA+AGG | 0.614597 | 1.3:+71807016 | MS.gene91411:CDS |
| AGTGAATTTGGAAAATCCAA+GGG | 0.635743 | 1.3:+71807048 | MS.gene91411:CDS |
| AGAAGATCACAAAGTCGACA+TGG | 0.636206 | 1.3:+71807888 | MS.gene91411:CDS |
| CAGGTGCTTTCATTGTACCA+AGG | 0.638706 | 1.3:+71806401 | MS.gene91411:CDS |
| CTCTGGCAGACCTTATCAGA+GGG | 0.640935 | 1.3:+71807072 | MS.gene91411:CDS |
| AAGCTGAAAAGAAGGCGCAG+AGG | 0.642022 | 1.3:+71807744 | MS.gene91411:CDS |
| CTGTACAATACTAATAACAC+AGG | 0.650569 | 1.3:+71806571 | MS.gene91411:CDS |
| GAAAGCAGAAAGTGATTCCG+GGG | 0.652721 | 1.3:-71807348 | None:intergenic |
| AGAGTGATACCTGAATAGAT+GGG | 0.654045 | 1.3:-71807149 | None:intergenic |
| ACTCTGGCAGACCTTATCAG+AGG | 0.672915 | 1.3:+71807071 | MS.gene91411:CDS |
| ATTGTCTGAAGCTACTTCTG+GGG | 0.678769 | 1.3:+71805368 | MS.gene91411:CDS |
| AGTATCAAGTGGATACAAGA+CGG | 0.683516 | 1.3:-71805415 | None:intergenic |
| TATTAGTATTGTACAGACGC+CGG | 0.694097 | 1.3:-71806564 | None:intergenic |
| CAAGACGGTGGTGCTAACAA+GGG | 0.715250 | 1.3:-71805400 | None:intergenic |
| ACAGACGCCGGACATAGTAG+CGG | 0.747106 | 1.3:-71806552 | None:intergenic |
| ATCAAGTGGATACAAGACGG+TGG | 0.749245 | 1.3:-71805412 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAGAGATAAATAATTT+AGG | - | chr1.3:71807451-71807470 | None:intergenic | 15.0% |
| !! | AGTTAATAGTAAAATTCAAA+AGG | + | chr1.3:71807522-71807541 | MS.gene91411:intron | 15.0% |
| !! | TATAATTCATGAAACAATTT+AGG | + | chr1.3:71805533-71805552 | MS.gene91411:intron | 15.0% |
| !! | TTGAAATTAAGTTTATCAAA+GGG | + | chr1.3:71806699-71806718 | MS.gene91411:intron | 15.0% |
| !!! | ACTTAATTTCAAGTTAATTT+AGG | - | chr1.3:71806691-71806710 | None:intergenic | 15.0% |
| !!! | CTTAATTTCAAGTTAATTTA+GGG | - | chr1.3:71806690-71806709 | None:intergenic | 15.0% |
| !!! | TAATTGAAAAGTACAATATT+TGG | + | chr1.3:71806748-71806767 | MS.gene91411:intron | 15.0% |
| !!! | TTTATCATATTGTTTTATTG+TGG | + | chr1.3:71806287-71806306 | MS.gene91411:intron | 15.0% |
| !!! | TTTTGAATTTTACTATTAAC+TGG | - | chr1.3:71807523-71807542 | None:intergenic | 15.0% |
| !! | ATGTAGTTTATGAAAAAAAC+AGG | + | chr1.3:71805912-71805931 | MS.gene91411:intron | 20.0% |
| !! | CAAAAGAAAACTTGTAATAT+TGG | - | chr1.3:71806265-71806284 | None:intergenic | 20.0% |
| !! | CTTGAAATTAAGTTTATCAA+AGG | + | chr1.3:71806698-71806717 | MS.gene91411:intron | 20.0% |
| !! | TAATTAGCCAATAATCAATT+TGG | - | chr1.3:71805515-71805534 | None:intergenic | 20.0% |
| !! | TGTTGTTAAAAGAATAGATA+TGG | - | chr1.3:71807127-71807146 | None:intergenic | 20.0% |
| !!! | ATTTTTTACCAAATACAAAC+AGG | - | chr1.3:71805585-71805604 | None:intergenic | 20.0% |
| !!! | TGTGTTAATATACAGATTTT+GGG | + | chr1.3:71807478-71807497 | MS.gene91411:intron | 20.0% |
| !!! | TTTGAAGATATAATTTGTGT+TGG | + | chr1.3:71805936-71805955 | MS.gene91411:intron | 20.0% |
| ! | AATCTGCAAAGAAAACAAAT+TGG | + | chr1.3:71806906-71806925 | MS.gene91411:intron | 25.0% |
| ! | AGAATCAATTATTCCAGATT+AGG | + | chr1.3:71807203-71807222 | MS.gene91411:intron | 25.0% |
| ! | AGACTATATTTGGAAAAAAG+TGG | + | chr1.3:71806494-71806513 | MS.gene91411:CDS | 25.0% |
| ! | ATAAATAAACGACGAAATGA+AGG | - | chr1.3:71806450-71806469 | None:intergenic | 25.0% |
| ! | CAAAAATAAGCCAATACAAA+CGG | + | chr1.3:71806021-71806040 | MS.gene91411:intron | 25.0% |
| ! | CTACAATTAAAGAGAAAATG+TGG | - | chr1.3:71806139-71806158 | None:intergenic | 25.0% |
| ! | TATACTATTTGGAAAAGAGA+AGG | + | chr1.3:71807785-71807804 | MS.gene91411:CDS | 25.0% |
| ! | TGAATGTTATCATTACCATT+TGG | - | chr1.3:71806237-71806256 | None:intergenic | 25.0% |
| ! | TGACATACTTATTTGTGATA+TGG | + | chr1.3:71806635-71806654 | MS.gene91411:intron | 25.0% |
| ! | TTTACTATTAACTGGAATCA+TGG | - | chr1.3:71807515-71807534 | None:intergenic | 25.0% |
| !! | AGAAAACCAAATGATAATGT+CGG | + | chr1.3:71805677-71805696 | MS.gene91411:intron | 25.0% |
| !! | ATAACCTGTATTTTCTTTGA+TGG | - | chr1.3:71805476-71805495 | None:intergenic | 25.0% |
| !! | CTACTTTAAGAGACTATATT+TGG | + | chr1.3:71806484-71806503 | MS.gene91411:CDS | 25.0% |
| !! | CTGTGTTAATATACAGATTT+TGG | + | chr1.3:71807477-71807496 | MS.gene91411:intron | 25.0% |
| !! | CTTTAAGAACATCTTGTATT+TGG | + | chr1.3:71805711-71805730 | MS.gene91411:intron | 25.0% |
| !! | GAGAATTTCTGATGTTTTAT+GGG | + | chr1.3:71806361-71806380 | MS.gene91411:CDS | 25.0% |
| !!! | ACAGGTTATTTTCCTTTTAT+TGG | + | chr1.3:71805487-71805506 | MS.gene91411:intron | 25.0% |
| !!! | AGATGTTTTGAATTTCCAAT+AGG | + | chr1.3:71807672-71807691 | MS.gene91411:intron | 25.0% |
| !!! | CAGGTTATTTTCCTTTTATT+GGG | + | chr1.3:71805488-71805507 | MS.gene91411:intron | 25.0% |
| !!! | TAAATTTTTTCACAGATCTG+TGG | + | chr1.3:71807562-71807581 | MS.gene91411:intron | 25.0% |
| !!! | TCGTCGTTTATTTATTTCTA+TGG | + | chr1.3:71806455-71806474 | MS.gene91411:CDS | 25.0% |
| AAAAGTGGAAACAAGAACAT+TGG | + | chr1.3:71806509-71806528 | MS.gene91411:CDS | 30.0% | |
| AAGTGAATTTGGAAAATCCA+AGG | + | chr1.3:71807047-71807066 | MS.gene91411:CDS | 30.0% | |
| AATAGTGACTTTACACCTAT+TGG | - | chr1.3:71807690-71807709 | None:intergenic | 30.0% | |
| AATTCTCCTACATAAGATAG+AGG | - | chr1.3:71806348-71806367 | None:intergenic | 30.0% | |
| ACGAAAACATCTTACAGTTT+AGG | + | chr1.3:71806099-71806118 | MS.gene91411:intron | 30.0% | |
| AGAACATCTTGTATTTGGAT+TGG | + | chr1.3:71805716-71805735 | MS.gene91411:intron | 30.0% | |
| AGTGAATTTGGAAAATCCAA+GGG | + | chr1.3:71807048-71807067 | MS.gene91411:CDS | 30.0% | |
| ATCAATTTGGACCCAATAAA+AGG | - | chr1.3:71805502-71805521 | None:intergenic | 30.0% | |
| ATTGGGTCCAAATTGATTAT+TGG | + | chr1.3:71805505-71805524 | MS.gene91411:intron | 30.0% | |
| CTGTACAATACTAATAACAC+AGG | + | chr1.3:71806571-71806590 | MS.gene91411:CDS | 30.0% | |
| CTTATCACAATAACTACTCT+AGG | + | chr1.3:71805794-71805813 | MS.gene91411:intron | 30.0% | |
| TCAATTAATGTCATGTTTGC+AGG | - | chr1.3:71806735-71806754 | None:intergenic | 30.0% | |
| TCATATAGTGTAACCTAATC+TGG | - | chr1.3:71807219-71807238 | None:intergenic | 30.0% | |
| TTATTGTGGCAAGATTAACA+AGG | + | chr1.3:71806301-71806320 | MS.gene91411:intron | 30.0% | |
| TTGAACTTCAGCTTGATATT+TGG | - | chr1.3:71805448-71805467 | None:intergenic | 30.0% | |
| ! | GGAGAATTTCTGATGTTTTA+TGG | + | chr1.3:71806360-71806379 | MS.gene91411:intron | 30.0% |
| !!! | TTGGTTTTACAAGTATCAAG+TGG | - | chr1.3:71805429-71805448 | None:intergenic | 30.0% |
| AAACATCTTTCATCAGCATG+TGG | - | chr1.3:71807660-71807679 | None:intergenic | 35.0% | |
| AACAACAAACCCATCTATTC+AGG | + | chr1.3:71807140-71807159 | MS.gene91411:CDS | 35.0% | |
| AAGAGTGATACCTGAATAGA+TGG | - | chr1.3:71807153-71807172 | None:intergenic | 35.0% | |
| AGAGTGATACCTGAATAGAT+GGG | - | chr1.3:71807152-71807171 | None:intergenic | 35.0% | |
| AGTATCAAGTGGATACAAGA+CGG | - | chr1.3:71805418-71805437 | None:intergenic | 35.0% | |
| ATCCATTGAAAAATCCCAAG+AGG | - | chr1.3:71807811-71807830 | None:intergenic | 35.0% | |
| ATCCTTGTCTAAAAAGAACG+CGG | + | chr1.3:71806847-71806866 | MS.gene91411:intron | 35.0% | |
| CAAACACCGACATTATCATT+TGG | - | chr1.3:71805686-71805705 | None:intergenic | 35.0% | |
| CAGCAAGGAAATAATGAGTT+TGG | - | chr1.3:71806956-71806975 | None:intergenic | 35.0% | |
| CTGAAACACAGACTACTAAA+GGG | + | chr1.3:71807293-71807312 | MS.gene91411:CDS | 35.0% | |
| CTTATCACAATAACTACTCC+AGG | + | chr1.3:71806069-71806088 | MS.gene91411:intron | 35.0% | |
| GTTGTTCCTCTATCTTATGT+AGG | + | chr1.3:71806339-71806358 | MS.gene91411:intron | 35.0% | |
| TAAACGACGAAATGAAGGAT+TGG | - | chr1.3:71806445-71806464 | None:intergenic | 35.0% | |
| TAGAGACTCCTGTTTGTATT+TGG | + | chr1.3:71805574-71805593 | MS.gene91411:intron | 35.0% | |
| TAGGTGTAAAGTCACTATTC+AGG | + | chr1.3:71807691-71807710 | MS.gene91411:intron | 35.0% | |
| TATTAGTATTGTACAGACGC+CGG | - | chr1.3:71806567-71806586 | None:intergenic | 35.0% | |
| TCAAGATGCTTTCAATTTGG+GGG | - | chr1.3:71807954-71807973 | None:intergenic | 35.0% | |
| TGACATACATCCGTTTGTAT+TGG | - | chr1.3:71806034-71806053 | None:intergenic | 35.0% | |
| TGCATTACTTCTGATGGTAA+AGG | + | chr1.3:71807865-71807884 | MS.gene91411:CDS | 35.0% | |
| TTAATGTCATGTTTGCAGGA+TGG | - | chr1.3:71806731-71806750 | None:intergenic | 35.0% | |
| ! | ATTTAGGTTAAGCGTGTGTT+TGG | + | chr1.3:71805549-71805568 | MS.gene91411:intron | 35.0% |
| ! | CAAATGATAATGTCGGTGTT+TGG | + | chr1.3:71805684-71805703 | MS.gene91411:intron | 35.0% |
| ! | GATGTTTTCGTAAACTATCC+TGG | - | chr1.3:71806090-71806109 | None:intergenic | 35.0% |
| !! | CTCATTATTTCCTTGCTGTT+AGG | + | chr1.3:71806958-71806977 | MS.gene91411:intron | 35.0% |
| !! | GCTTTCTCTGCTTTTATGTT+GGG | + | chr1.3:71807365-71807384 | MS.gene91411:CDS | 35.0% |
| !! | TGCTTTCTCTGCTTTTATGT+TGG | + | chr1.3:71807364-71807383 | MS.gene91411:CDS | 35.0% |
| ACTCGATCTTTAGCAGAACT+AGG | + | chr1.3:71806793-71806812 | MS.gene91411:intron | 40.0% | |
| AGAAAGCAGAAAGTGATTCC+GGG | - | chr1.3:71807352-71807371 | None:intergenic | 40.0% | |
| AGAAGATCACAAAGTCGACA+TGG | + | chr1.3:71807888-71807907 | MS.gene91411:CDS | 40.0% | |
| AGATTATGCACCTAACAGCA+AGG | - | chr1.3:71806971-71806990 | None:intergenic | 40.0% | |
| AGGATGCAGACAAGTGAATT+TGG | + | chr1.3:71807036-71807055 | MS.gene91411:CDS | 40.0% | |
| CAAGATGCTTTCAATTTGGG+GGG | - | chr1.3:71807953-71807972 | None:intergenic | 40.0% | |
| CCAGCCATCAAAGAAAATAC+AGG | + | chr1.3:71805469-71805488 | MS.gene91411:CDS | 40.0% | |
| CTTGAGGATGCTGTATCTAA+GGG | - | chr1.3:71807018-71807037 | None:intergenic | 40.0% | |
| CTTTCATTGTACCAAGGCTT+GGG | + | chr1.3:71806407-71806426 | MS.gene91411:CDS | 40.0% | |
| GAGAAAGCAGAAAGTGATTC+CGG | - | chr1.3:71807353-71807372 | None:intergenic | 40.0% | |
| GAGTACAGAAGCTGAAAAGA+AGG | + | chr1.3:71807736-71807755 | MS.gene91411:CDS | 40.0% | |
| GATCGAATGCAGTATACTGT+TGG | - | chr1.3:71807271-71807290 | None:intergenic | 40.0% | |
| GCTGAAACACAGACTACTAA+AGG | + | chr1.3:71807292-71807311 | MS.gene91411:CDS | 40.0% | |
| GGAAGCAATTTCTAAACGTC+AGG | + | chr1.3:71806382-71806401 | MS.gene91411:CDS | 40.0% | |
| TGATAATCCACCTGATAGCT+GGG | - | chr1.3:71807427-71807446 | None:intergenic | 40.0% | |
| TGGATTCTGATGCTCATCAT+TGG | + | chr1.3:71807908-71807927 | MS.gene91411:CDS | 40.0% | |
| TTTCACAGATCTGTGGTTTC+TGG | + | chr1.3:71807569-71807588 | MS.gene91411:intron | 40.0% | |
| TTTCATTGTACCAAGGCTTG+GGG | + | chr1.3:71806408-71806427 | MS.gene91411:CDS | 40.0% | |
| ! | AACCGCGTTCTTTTTAGACA+AGG | - | chr1.3:71806852-71806871 | None:intergenic | 40.0% |
| ! | ATTGTCTGAAGCTACTTCTG+GGG | + | chr1.3:71805368-71805387 | MS.gene91411:CDS | 40.0% |
| ! | CATTGTCTGAAGCTACTTCT+GGG | + | chr1.3:71805367-71805386 | MS.gene91411:CDS | 40.0% |
| ! | CTGGAGCACTCTATACTATT+TGG | + | chr1.3:71807774-71807793 | MS.gene91411:CDS | 40.0% |
| ! | GGTTTCTGGAGATGTATCTT+GGG | + | chr1.3:71807583-71807602 | MS.gene91411:intron | 40.0% |
| ! | TCATTGTCTGAAGCTACTTC+TGG | + | chr1.3:71805366-71805385 | MS.gene91411:CDS | 40.0% |
| ! | TGGTTTCTGGAGATGTATCT+TGG | + | chr1.3:71807582-71807601 | MS.gene91411:intron | 40.0% |
| ! | TTGATAATCCACCTGATAGC+TGG | - | chr1.3:71807428-71807447 | None:intergenic | 40.0% |
| !! | CCTGTATTTTCTTTGATGGC+TGG | - | chr1.3:71805472-71805491 | None:intergenic | 40.0% |
| !!! | GGGATTTTTCAATGGATTGC+AGG | + | chr1.3:71807814-71807833 | MS.gene91411:CDS | 40.0% |
| ACCATCAAATGCATCACTCC+AGG | - | chr1.3:71807100-71807119 | None:intergenic | 45.0% | |
| ACCTGGAGTGATGCATTTGA+TGG | + | chr1.3:71807096-71807115 | MS.gene91411:CDS | 45.0% | |
| ATCAAGTGGATACAAGACGG+TGG | - | chr1.3:71805415-71805434 | None:intergenic | 45.0% | |
| CAGCTCTGCATTACTTCTGA+TGG | + | chr1.3:71807859-71807878 | MS.gene91411:CDS | 45.0% | |
| CAGGTGCTTTCATTGTACCA+AGG | + | chr1.3:71806401-71806420 | MS.gene91411:CDS | 45.0% | |
| CCTTAGATACAGCATCCTCA+AGG | + | chr1.3:71807016-71807035 | MS.gene91411:CDS | 45.0% | |
| CCTTGAGGATGCTGTATCTA+AGG | - | chr1.3:71807019-71807038 | None:intergenic | 45.0% | |
| CGAATGCAGTATACTGTTGG+AGG | - | chr1.3:71807268-71807287 | None:intergenic | 45.0% | |
| GAAAGCAGAAAGTGATTCCG+GGG | - | chr1.3:71807351-71807370 | None:intergenic | 45.0% | |
| GCTTTCATTGTACCAAGGCT+TGG | + | chr1.3:71806406-71806425 | MS.gene91411:CDS | 45.0% | |
| TGCTTTCAATTTGGGGGGAT+TGG | - | chr1.3:71807948-71807967 | None:intergenic | 45.0% | |
| TGGAAAAGAGAAGGCCTCTT+GGG | + | chr1.3:71807794-71807813 | MS.gene91411:CDS | 45.0% | |
| TTCACTTGTCTGCATCCTTG+AGG | - | chr1.3:71807034-71807053 | None:intergenic | 45.0% | |
| TTGATTGCCGCTACTATGTC+CGG | + | chr1.3:71806545-71806564 | MS.gene91411:CDS | 45.0% | |
| TTGGAAAAGAGAAGGCCTCT+TGG | + | chr1.3:71807793-71807812 | MS.gene91411:CDS | 45.0% | |
| TTGGAAAATCCAAGGGACTC+TGG | + | chr1.3:71807055-71807074 | MS.gene91411:CDS | 45.0% | |
| !! | GGCCTCTTGGGATTTTTCAA+TGG | + | chr1.3:71807806-71807825 | MS.gene91411:CDS | 45.0% |
| !!! | CATTTTTTGTCCCCAAGCCT+TGG | - | chr1.3:71806421-71806440 | None:intergenic | 45.0% |
| AACCGATGCAAAGTCATCCC+CGG | + | chr1.3:71807331-71807350 | MS.gene91411:CDS | 50.0% | |
| ACTCCAGGTACCCTCTGATA+AGG | - | chr1.3:71807085-71807104 | None:intergenic | 50.0% | |
| ACTCTGGCAGACCTTATCAG+AGG | + | chr1.3:71807071-71807090 | MS.gene91411:CDS | 50.0% | |
| CAAACGCACACGATGCCAAA+TGG | + | chr1.3:71806219-71806238 | MS.gene91411:intron | 50.0% | |
| CATCAGCGCAGCATGTGTTT+GGG | + | chr1.3:71805739-71805758 | MS.gene91411:intron | 50.0% | |
| CATTTGGCATCGTGTGCGTT+TGG | - | chr1.3:71806221-71806240 | None:intergenic | 50.0% | |
| CTCTGGCAGACCTTATCAGA+GGG | + | chr1.3:71807072-71807091 | MS.gene91411:CDS | 50.0% | |
| GCTTGACATACCCAGCTATC+AGG | + | chr1.3:71807414-71807433 | MS.gene91411:CDS | 50.0% | |
| TGACATACCCAGCTATCAGG+TGG | + | chr1.3:71807417-71807436 | MS.gene91411:intron | 50.0% | |
| TTCCGGGGATGACTTTGCAT+CGG | - | chr1.3:71807336-71807355 | None:intergenic | 50.0% | |
| ! | AAGCTGAAAAGAAGGCGCAG+AGG | + | chr1.3:71807744-71807763 | MS.gene91411:CDS | 50.0% |
| ! | ACAAGACGGTGGTGCTAACA+AGG | - | chr1.3:71805404-71805423 | None:intergenic | 50.0% |
| ! | CAAGACGGTGGTGCTAACAA+GGG | - | chr1.3:71805403-71805422 | None:intergenic | 50.0% |
| !! | AGACCTTATCAGAGGGTACC+TGG | + | chr1.3:71807079-71807098 | MS.gene91411:CDS | 50.0% |
| !! | GAAGCTACTTCTGGGGCTAT+TGG | + | chr1.3:71805375-71805394 | MS.gene91411:CDS | 50.0% |
| AAGGCGCAGAGGACAATCTC+TGG | + | chr1.3:71807755-71807774 | MS.gene91411:CDS | 55.0% | |
| ACAGACGCCGGACATAGTAG+CGG | - | chr1.3:71806555-71806574 | None:intergenic | 55.0% | |
| GCATCAGCGCAGCATGTGTT+TGG | + | chr1.3:71805738-71805757 | MS.gene91411:intron | 55.0% | |
| TAAGGTCTGCCAGAGTCCCT+TGG | - | chr1.3:71807067-71807086 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 71805348 | 71807973 | 71805348 | ID=MS.gene91411 |
| chr1.3 | mRNA | 71805348 | 71807973 | 71805348 | ID=MS.gene91411.t1;Parent=MS.gene91411 |
| chr1.3 | exon | 71805348 | 71805490 | 71805348 | ID=MS.gene91411.t1.exon1;Parent=MS.gene91411.t1 |
| chr1.3 | CDS | 71805348 | 71805490 | 71805348 | ID=cds.MS.gene91411.t1;Parent=MS.gene91411.t1 |
| chr1.3 | exon | 71806361 | 71806592 | 71806361 | ID=MS.gene91411.t1.exon2;Parent=MS.gene91411.t1 |
| chr1.3 | CDS | 71806361 | 71806592 | 71806361 | ID=cds.MS.gene91411.t1;Parent=MS.gene91411.t1 |
| chr1.3 | exon | 71807015 | 71807161 | 71807015 | ID=MS.gene91411.t1.exon3;Parent=MS.gene91411.t1 |
| chr1.3 | CDS | 71807015 | 71807161 | 71807015 | ID=cds.MS.gene91411.t1;Parent=MS.gene91411.t1 |
| chr1.3 | exon | 71807275 | 71807435 | 71807275 | ID=MS.gene91411.t1.exon4;Parent=MS.gene91411.t1 |
| chr1.3 | CDS | 71807275 | 71807435 | 71807275 | ID=cds.MS.gene91411.t1;Parent=MS.gene91411.t1 |
| chr1.3 | exon | 71807694 | 71807973 | 71807694 | ID=MS.gene91411.t1.exon5;Parent=MS.gene91411.t1 |
| chr1.3 | CDS | 71807694 | 71807973 | 71807694 | ID=cds.MS.gene91411.t1;Parent=MS.gene91411.t1 |
| Gene Sequence |
| Protein sequence |
