AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059801


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059801.t1 MTR_2g085340 97.377 305 8 0 1 305 1 305 0.0 609
MS.gene059801.t1 MTR_2g085340 97.786 271 6 0 1 271 1 271 0.0 541
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059801.t1 AT1G53120 62.418 306 100 5 6 305 4 300 6.04e-135 385
MS.gene059801.t1 AT1G53120 62.418 306 99 6 6 305 4 299 2.59e-133 381

Find 64 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTCCTTGGCTCAATTCT+TGG 0.207293 2.4:+18991319 MS.gene059801:CDS
TAGTGGATTGGGAAGATTAA+AGG 0.272114 2.4:+18994602 MS.gene059801:CDS
GGTATCTTGGTGCAAGTTAC+AGG 0.327096 2.4:-18993586 None:intergenic
CAGTTTGAACCTTGCTCTCA+TGG 0.330450 2.4:+18991295 MS.gene059801:CDS
GGATCACTTGTCAGTTCATC+TGG 0.343082 2.4:-18991138 None:intergenic
TGCTCTCATGGTGACTTCCT+TGG 0.363969 2.4:+18991307 MS.gene059801:CDS
CCTTGTTACCCAGGGAGAAC+AGG 0.372665 2.4:+18992161 MS.gene059801:intron
ATGTATTGCTCAAGGGAGTT+GGG 0.373857 2.4:+18990605 MS.gene059801:CDS
AAGTGATCCAGATGTTATTT+CGG 0.379461 2.4:+18991152 MS.gene059801:CDS
CTTGTATCAGTTAGTGGATT+GGG 0.386024 2.4:+18994591 MS.gene059801:CDS
AGTTGGGGATATTATATTGC+AGG 0.396380 2.4:+18991363 MS.gene059801:CDS
CGAAGCTAGTTGACATGATC+AGG 0.398418 2.4:+18993809 MS.gene059801:CDS
TCATAATCAAGAGAAATTAA+TGG 0.400281 2.4:-18993607 None:intergenic
GAATTGTCAGGGAGAAAGTT+GGG 0.409360 2.4:+18991347 MS.gene059801:CDS
AAGAGAAATTAATGGTATCT+TGG 0.414759 2.4:-18993599 None:intergenic
TCTTGCGTCAGCACTGGATA+AGG 0.420014 2.4:+18992221 MS.gene059801:CDS
GGAGATCTTGTATCAGTTAG+TGG 0.420203 2.4:+18994585 MS.gene059801:CDS
GCTGCAACTACCACTAGCTT+TGG 0.424137 2.4:+18988497 MS.gene059801:CDS
CTCTTTAGGCTGAACGGTGC+CGG 0.424686 2.4:+18991100 MS.gene059801:intron
CTTGGCTCAATTCTTGGTAC+AGG 0.426476 2.4:+18991325 MS.gene059801:CDS
GATGTATTGCTCAAGGGAGT+TGG 0.427872 2.4:+18990604 MS.gene059801:CDS
AGGAGAGAAGATGAGAGGTA+AGG 0.433483 2.4:-18988616 None:intergenic
GAGGGGTTAGAAAATTTGTA+TGG 0.436886 2.4:-18990914 None:intergenic
CTCAATGCCGAAATAACATC+TGG 0.441188 2.4:-18991159 None:intergenic
AAAAGAATCTATGCAAGTAT+TGG 0.445890 2.4:+18990944 MS.gene059801:CDS
CATGAGAGCAAGGTTCAAAC+TGG 0.449126 2.4:-18991294 None:intergenic
GTAACCTGAAGAAGTGGAAA+AGG 0.453594 2.4:-18988636 None:intergenic
TGGATCCCAATTACTACAAA+AGG 0.454338 2.4:+18994546 MS.gene059801:CDS
ATGGCAATGTACGTATCAAC+TGG 0.455317 2.4:+18994526 MS.gene059801:CDS
TTCTTGGTACAGGAATTGTC+AGG 0.461050 2.4:+18991335 MS.gene059801:CDS
CTGGATGTCCAACAGAAATC+CGG 0.476765 2.4:-18991119 None:intergenic
AGAATTTCTTGCGTCAGCAC+TGG 0.477119 2.4:+18992215 MS.gene059801:CDS
GAACGGTGCCGGATTTCTGT+TGG 0.493515 2.4:+18991111 MS.gene059801:CDS
TAGAGAGTAACCTGAAGAAG+TGG 0.494138 2.4:-18988642 None:intergenic
TCTTGTATCAGTTAGTGGAT+TGG 0.495279 2.4:+18994590 MS.gene059801:CDS
GTTGATGCAGTAGCCAGTGC+AGG 0.500484 2.4:+18993769 MS.gene059801:CDS
GGAGAGAAGATGAGAGGTAA+GGG 0.518934 2.4:-18988615 None:intergenic
GCAAGAAATTCTACAAGCTC+TGG 0.522573 2.4:-18992204 None:intergenic
TGAAATCTTAAATCCTGCAC+TGG 0.527319 2.4:-18993782 None:intergenic
GGAATTGTCAGGGAGAAAGT+TGG 0.527589 2.4:+18991346 MS.gene059801:CDS
CCACTAGCTTTGGAACTGCT+TGG 0.535075 2.4:+18988507 MS.gene059801:CDS
CTCTTGATTATGAACCGCCA+AGG 0.539330 2.4:+18993617 MS.gene059801:CDS
GGGCCAAGATGTTACCTTGG+CGG 0.539528 2.4:-18993631 None:intergenic
CAGATGTTATTTCGGCATTG+AGG 0.539649 2.4:+18991160 MS.gene059801:CDS
AGAGGTTGTTAGCATTGTTG+CGG 0.563507 2.4:-18988580 None:intergenic
AGAAGTTGATGTATTGCTCA+AGG 0.564298 2.4:+18990597 MS.gene059801:CDS
CTTGTTACCCAGGGAGAACA+GGG 0.565414 2.4:+18992162 MS.gene059801:intron
GCTAGTGGTAGTTGCAGCCA+TGG 0.567257 2.4:-18988492 None:intergenic
AAGATCTCCACTCTTGATTG+TGG 0.570795 2.4:-18994571 None:intergenic
GACATTAAAGCATTAGCTCA+AGG 0.584149 2.4:+18990978 MS.gene059801:CDS
GGAAAAGGAGAGAAGATGAG+AGG 0.603841 2.4:-18988621 None:intergenic
TATATGCTCTTTAGGCTGAA+CGG 0.610234 2.4:+18991094 MS.gene059801:intron
TGTATTGCTCAAGGGAGTTG+GGG 0.611297 2.4:+18990606 MS.gene059801:CDS
AGGAAGTCACCATGAGAGCA+AGG 0.611523 2.4:-18991304 None:intergenic
AGCTCAAGGAGGTTATCCAC+AGG 0.615414 2.4:+18990992 MS.gene059801:CDS
TAAGGGTCCTTTGAAAAGAG+AGG 0.622157 2.4:-18988598 None:intergenic
GAAGTTGATGTATTGCTCAA+GGG 0.624002 2.4:+18990598 MS.gene059801:CDS
AAAGGAACCACAATCAAGAG+TGG 0.627963 2.4:+18994564 MS.gene059801:CDS
TCTTGGTACAGGAATTGTCA+GGG 0.628354 2.4:+18991336 MS.gene059801:CDS
CCAAGCAGTTCCAAAGCTAG+TGG 0.639165 2.4:-18988507 None:intergenic
AATTGTCAGGGAGAAAGTTG+GGG 0.647375 2.4:+18991348 MS.gene059801:CDS
CTGTACCAAGAATTGAGCCA+AGG 0.655995 2.4:-18991324 None:intergenic
AGTGAAGCATGTTCTTGAGA+TGG 0.664704 2.4:+18990648 MS.gene059801:CDS
ATTAAAGCATTAGCTCAAGG+AGG 0.699820 2.4:+18990981 MS.gene059801:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAATTTAATCC+AGG - chr2.4:18991907-18991926 None:intergenic 10.0%
!! ACTGAAAATAAATTAAATAA+TGG - chr2.4:18988805-18988824 None:intergenic 10.0%
!! CAAAAAAAAAAAAATAGAAA+TGG - chr2.4:18988678-18988697 None:intergenic 10.0%
!!! CTTTTTTATAAAATAAATTG+TGG + chr2.4:18988751-18988770 MS.gene059801:intron 10.0%
!!! TTCTATTTTTTTTTTTTTGT+AGG + chr2.4:18988679-18988698 MS.gene059801:intron 10.0%
!! ATTTAGTAATATTTATTCAG+AGG - chr2.4:18992457-18992476 None:intergenic 15.0%
!! TAGCATAAAATGATATATAA+TGG - chr2.4:18990809-18990828 None:intergenic 15.0%
!! TTATCTAAATATACTATGAA+AGG - chr2.4:18991244-18991263 None:intergenic 15.0%
!! TTGAAATTGTGTTTATAAAT+GGG + chr2.4:18993468-18993487 MS.gene059801:intron 15.0%
!!! ATAAAAGAACTTTTTACTAT+AGG + chr2.4:18992568-18992587 MS.gene059801:intron 15.0%
!!! TGATATTTTATATACAACAA+AGG + chr2.4:18991499-18991518 MS.gene059801:intron 15.0%
!! AAAGTTATACAAAATACGAA+GGG - chr2.4:18992131-18992150 None:intergenic 20.0%
!! AATTTACGTATCAAAACAAA+AGG + chr2.4:18992288-18992307 MS.gene059801:intron 20.0%
!! ACATAACATAAGTCAATATA+TGG + chr2.4:18993994-18994013 MS.gene059801:intron 20.0%
!! ACATAATATATATGCTCTTT+AGG + chr2.4:18991086-18991105 MS.gene059801:intron 20.0%
!! ACATCATATATACACAAATT+AGG - chr2.4:18993844-18993863 None:intergenic 20.0%
!! AGTTTCACATTGTTTATTAT+TGG + chr2.4:18990083-18990102 MS.gene059801:intron 20.0%
!! ATCTCTATATCTTTCTTAAT+TGG - chr2.4:18992016-18992035 None:intergenic 20.0%
!! CATCATATATACACAAATTA+GGG - chr2.4:18993843-18993862 None:intergenic 20.0%
!! CATTAAATTTATGCTCTATT+TGG - chr2.4:18994258-18994277 None:intergenic 20.0%
!! CTCAAAAAATGTTTATAAGT+GGG + chr2.4:18991766-18991785 MS.gene059801:intron 20.0%
!! CTTGAAATTGTGTTTATAAA+TGG + chr2.4:18993467-18993486 MS.gene059801:intron 20.0%
!! GATACGTAAATTTATTAAGA+AGG - chr2.4:18992280-18992299 None:intergenic 20.0%
!! TAGACTAATGTTAGTATATT+AGG + chr2.4:18992835-18992854 MS.gene059801:intron 20.0%
!! TATCTAAATCAAAAACCTTA+AGG - chr2.4:18990158-18990177 None:intergenic 20.0%
!! TATTGATCAAATCATTGAAA+AGG + chr2.4:18993261-18993280 MS.gene059801:intron 20.0%
!! TCATAATCAAGAGAAATTAA+TGG - chr2.4:18993610-18993629 None:intergenic 20.0%
!! TCTCTATATCTTTCTTAATT+GGG - chr2.4:18992015-18992034 None:intergenic 20.0%
!! TGGTCAAATAAAACATATAA+TGG - chr2.4:18991933-18991952 None:intergenic 20.0%
!! TTTATAATTGTGTTCCTAAA+GGG - chr2.4:18992941-18992960 None:intergenic 20.0%
!!! TAAGGTTTTTGATTTAGATA+GGG + chr2.4:18990158-18990177 MS.gene059801:intron 20.0%
!!! TAGGAATACAATCTTTTTAT+TGG + chr2.4:18992811-18992830 MS.gene059801:intron 20.0%
!!! TATGTTTTATTTGACCATTT+TGG + chr2.4:18991936-18991955 MS.gene059801:intron 20.0%
!!! TCTTAGCTAAATCATTATTT+TGG + chr2.4:18990487-18990506 MS.gene059801:intron 20.0%
!!! TTAAGGTTTTTGATTTAGAT+AGG + chr2.4:18990157-18990176 MS.gene059801:intron 20.0%
!!! TTGTAGTAAAGTTTAAAACT+TGG + chr2.4:18988904-18988923 MS.gene059801:intron 20.0%
!!! TTTTAGGTAAAAGTAGTAAA+TGG - chr2.4:18991405-18991424 None:intergenic 20.0%
!!! TTTTATAATTGTGTTCCTAA+AGG - chr2.4:18992942-18992961 None:intergenic 20.0%
!!! TTTTGAACAATTGAACATAA+TGG - chr2.4:18988724-18988743 None:intergenic 20.0%
! AAAAGAATCTATGCAAGTAT+TGG + chr2.4:18990944-18990963 MS.gene059801:CDS 25.0%
! AAATAAGTGCAAGAAAATCA+AGG - chr2.4:18994330-18994349 None:intergenic 25.0%
! AAGAGAAATTAATGGTATCT+TGG - chr2.4:18993602-18993621 None:intergenic 25.0%
! AAGCATTAAAAATGTGAAAC+TGG - chr2.4:18990528-18990547 None:intergenic 25.0%
! AAGTCATATCACATATAATG+TGG - chr2.4:18993450-18993469 None:intergenic 25.0%
! AAGTTATAAAACTTATGAGC+TGG - chr2.4:18994127-18994146 None:intergenic 25.0%
! AATGAAATTTGTATGGATCA+AGG - chr2.4:18990693-18990712 None:intergenic 25.0%
! AATGATATATAATGGCTCAA+AGG - chr2.4:18990801-18990820 None:intergenic 25.0%
! ACATTGTTTATTATTGGACA+AGG + chr2.4:18990089-18990108 MS.gene059801:intron 25.0%
! AGAAAAAAAAACTTTCCATC+AGG - chr2.4:18993367-18993386 None:intergenic 25.0%
! AGTAAAGAAAGTAGATCATA+TGG + chr2.4:18993197-18993216 MS.gene059801:intron 25.0%
! AGTAAGAAAATGGTTAAGAT+GGG + chr2.4:18989893-18989912 MS.gene059801:intron 25.0%
! ATAGTTCTTATTCACCTTTA+AGG - chr2.4:18993244-18993263 None:intergenic 25.0%
! ATGAAATTTGTATGGATCAA+GGG - chr2.4:18990692-18990711 None:intergenic 25.0%
! CAAAGTTATACAAAATACGA+AGG - chr2.4:18992132-18992151 None:intergenic 25.0%
! CACAATTATAAAACGAAATG+CGG + chr2.4:18992949-18992968 MS.gene059801:intron 25.0%
! CCTCAAAAAATGTTTATAAG+TGG + chr2.4:18991765-18991784 MS.gene059801:intron 25.0%
! CTTATAGATAAGCACTTATA+TGG - chr2.4:18989117-18989136 None:intergenic 25.0%
! GAAAAGGATTCAGATTTAAA+TGG + chr2.4:18993277-18993296 MS.gene059801:intron 25.0%
! GTAAAGAAAGTAGATCATAT+GGG + chr2.4:18993198-18993217 MS.gene059801:intron 25.0%
! TACTAAATTTCGTAGTTTGA+AGG + chr2.4:18992469-18992488 MS.gene059801:intron 25.0%
! TAGTAAGAAAATGGTTAAGA+TGG + chr2.4:18989892-18989911 MS.gene059801:intron 25.0%
! TGATGAATATATTGCTGAAT+TGG + chr2.4:18988863-18988882 MS.gene059801:intron 25.0%
! TGATTTATCCTTTGATCATT+TGG + chr2.4:18990375-18990394 MS.gene059801:intron 25.0%
! TTAAAGGAAATTATACCGTA+TGG + chr2.4:18992661-18992680 MS.gene059801:intron 25.0%
! TTATAATTGTGTTCCTAAAG+GGG - chr2.4:18992940-18992959 None:intergenic 25.0%
! TTATATGGAATGAGAATCAA+TGG + chr2.4:18989670-18989689 MS.gene059801:intron 25.0%
! TTCAAACTTAAGTTTCTACT+TGG - chr2.4:18989394-18989413 None:intergenic 25.0%
! TTCAATTGTTAAAGCCTTAA+AGG + chr2.4:18993227-18993246 MS.gene059801:intron 25.0%
!! AGTCTAGAATGAAATTTGTA+TGG - chr2.4:18990700-18990719 None:intergenic 25.0%
!! ATCCTTTAACTTAAGTGATT+TGG + chr2.4:18993144-18993163 MS.gene059801:intron 25.0%
!! CTCTTTTGCATGAAATATTT+TGG + chr2.4:18994455-18994474 MS.gene059801:intron 25.0%
!! GAAACGTTATTCAAGTTTAA+AGG + chr2.4:18992645-18992664 MS.gene059801:intron 25.0%
!! TCCTTTAACTTAAGTGATTT+GGG + chr2.4:18993145-18993164 MS.gene059801:intron 25.0%
!! TTCACTTTCCTAAAGTATTA+TGG + chr2.4:18989531-18989550 MS.gene059801:intron 25.0%
!! TTTTACTATAGGATCTTAGT+AGG + chr2.4:18992579-18992598 MS.gene059801:intron 25.0%
!!! AAGCACTTCATTTTGATTTT+AGG - chr2.4:18989323-18989342 None:intergenic 25.0%
!!! AGCACTTCATTTTGATTTTA+GGG - chr2.4:18989322-18989341 None:intergenic 25.0%
!!! CCACTTATAAACATTTTTTG+AGG - chr2.4:18991768-18991787 None:intergenic 25.0%
!!! GCAGGAATTTTTTAAAATCT+CGG + chr2.4:18992384-18992403 MS.gene059801:intron 25.0%
!!! TTGAATTCTTGATTTGCTTA+TGG + chr2.4:18993877-18993896 MS.gene059801:intron 25.0%
!!! TTTTGATTTTAGGGTTTGTT+TGG - chr2.4:18989313-18989332 None:intergenic 25.0%
!!! TTTTGTAGGTTGATTCTATT+TGG + chr2.4:18988693-18988712 MS.gene059801:intron 25.0%
!!! TTTTTTTCTTTTTCTGTGTG+CGG + chr2.4:18993378-18993397 MS.gene059801:intron 25.0%
AAAGAAATCATGATTGTGAG+CGG + chr2.4:18989716-18989735 MS.gene059801:intron 30.0%
AACTTAAGTTTCTACTTGGA+TGG - chr2.4:18989390-18989409 None:intergenic 30.0%
ACAACGAAACTAATACCTTA+AGG + chr2.4:18990140-18990159 MS.gene059801:intron 30.0%
ACTTTACTGTATCAAGGTAA+TGG - chr2.4:18991042-18991061 None:intergenic 30.0%
AGATATAGAGATTAATGAGC+TGG + chr2.4:18992024-18992043 MS.gene059801:intron 30.0%
AGCATCAACAATTTCTGTAT+TGG - chr2.4:18991213-18991232 None:intergenic 30.0%
AGTAGACACCATAATACTTT+AGG - chr2.4:18989542-18989561 None:intergenic 30.0%
ATAATAACTCTTGACGATAC+AGG - chr2.4:18990241-18990260 None:intergenic 30.0%
ATATTCATCATCACCATGTT+GGG - chr2.4:18988853-18988872 None:intergenic 30.0%
ATCAAAATTGCTCAGTAGTT+GGG - chr2.4:18990356-18990375 None:intergenic 30.0%
ATGTAATGAAGAACTTACCA+AGG - chr2.4:18990207-18990226 None:intergenic 30.0%
ATTCAGAAAACAAGTTCTCA+AGG - chr2.4:18993918-18993937 None:intergenic 30.0%
CAAAGTTAAATCATTGTGAC+TGG + chr2.4:18991714-18991733 MS.gene059801:intron 30.0%
CATAAGTCAATATATGGATG+AGG + chr2.4:18994000-18994019 MS.gene059801:intron 30.0%
CATATGCCAAAATAACCAAA+GGG - chr2.4:18994400-18994419 None:intergenic 30.0%
CATGTAGAAAAAAAAGTTCC+AGG - chr2.4:18990731-18990750 None:intergenic 30.0%
CTACAATTTATGAAACCCTT+TGG - chr2.4:18988890-18988909 None:intergenic 30.0%
CTTAAGATTTGAATTGAGTG+TGG - chr2.4:18993515-18993534 None:intergenic 30.0%
GAATGAATGTAATCACAAGT+CGG - chr2.4:18989514-18989533 None:intergenic 30.0%
GCATCAACAATTTCTGTATT+GGG - chr2.4:18991212-18991231 None:intergenic 30.0%
GGTCATGAACATATCATAAA+CGG + chr2.4:18989220-18989239 MS.gene059801:intron 30.0%
GTATCGTCAAGAGTTATTAT+TGG + chr2.4:18990241-18990260 MS.gene059801:intron 30.0%
TATAAGCTGAAAACAGCTTA+TGG - chr2.4:18994074-18994093 None:intergenic 30.0%
TATAATTGTGTTCCTAAAGG+GGG - chr2.4:18992939-18992958 None:intergenic 30.0%
TATATTCATCATCACCATGT+TGG - chr2.4:18988854-18988873 None:intergenic 30.0%
TATCACACTTTAAGTACCTT+GGG + chr2.4:18992522-18992541 MS.gene059801:intron 30.0%
TCAACATTTGATGTATGGTT+CGG + chr2.4:18990775-18990794 MS.gene059801:intron 30.0%
TCAGTAGTAATGTTTATGAC+TGG + chr2.4:18990295-18990314 MS.gene059801:intron 30.0%
TCATATGCCAAAATAACCAA+AGG - chr2.4:18994401-18994420 None:intergenic 30.0%
TCCCAAATCACTTAAGTTAA+AGG - chr2.4:18993149-18993168 None:intergenic 30.0%
TGCATTCTTCTTATTCATTC+AGG + chr2.4:18993552-18993571 MS.gene059801:intron 30.0%
TGTAATGAAGAACTTACCAA+GGG - chr2.4:18990206-18990225 None:intergenic 30.0%
TGTGTTATATTACAGTCAGT+GGG - chr2.4:18989423-18989442 None:intergenic 30.0%
TTGTGTATATATGATGTCTG+TGG + chr2.4:18993847-18993866 MS.gene059801:intron 30.0%
TTGTGTTATATTACAGTCAG+TGG - chr2.4:18989424-18989443 None:intergenic 30.0%
TTTATGTCAACTTCAAACCA+GGG - chr2.4:18993654-18993673 None:intergenic 30.0%
! AAGTGATCCAGATGTTATTT+CGG + chr2.4:18991152-18991171 MS.gene059801:CDS 30.0%
! ACATGTTCTATCATCTTTTC+TGG - chr2.4:18992986-18993005 None:intergenic 30.0%
! ATTACTCTTTTCAGCATTAC+AGG + chr2.4:18991265-18991284 MS.gene059801:intron 30.0%
! GGATCTTTTACTATATACAC+AGG - chr2.4:18991587-18991606 None:intergenic 30.0%
! TGGTTCCTTTTGTAGTAATT+GGG - chr2.4:18994554-18994573 None:intergenic 30.0%
! TTAAGTGATTTGGGAAAATG+TGG + chr2.4:18993154-18993173 MS.gene059801:intron 30.0%
! TTACTCTTTTCAGCATTACA+GGG + chr2.4:18991266-18991285 MS.gene059801:intron 30.0%
! TTGAAAGTATGTCTGATAGT+TGG + chr2.4:18989851-18989870 MS.gene059801:intron 30.0%
! TTGTTACCCTTTGGTTATTT+TGG + chr2.4:18994391-18994410 MS.gene059801:intron 30.0%
! TTTTATGTCAACTTCAAACC+AGG - chr2.4:18993655-18993674 None:intergenic 30.0%
!! ATATACTATGAAAGGCATCT+AGG - chr2.4:18991236-18991255 None:intergenic 30.0%
!! GCAAGTATTGGAAAAATTAG+CGG + chr2.4:18990956-18990975 MS.gene059801:CDS 30.0%
!!! CTGGAACTTTTTTTTCTACA+TGG + chr2.4:18990729-18990748 MS.gene059801:intron 30.0%
AACAATTTCTGTATTGGGCT+TGG - chr2.4:18991207-18991226 None:intergenic 35.0%
AAGAAAGTAGATCATATGGG+AGG + chr2.4:18993201-18993220 MS.gene059801:intron 35.0%
ACAGACATCAAACAATGACA+CGG - chr2.4:18989592-18989611 None:intergenic 35.0%
ACAGGTAACCATCTAGATAT+AGG + chr2.4:18991010-18991029 MS.gene059801:intron 35.0%
ACATATTGTGCTCATAGCAA+TGG + chr2.4:18994507-18994526 MS.gene059801:intron 35.0%
ACATCATTTGATCCCTAACT+TGG + chr2.4:18990833-18990852 MS.gene059801:intron 35.0%
ACATGTGAAGCAATAGTGAA+GGG + chr2.4:18988961-18988980 MS.gene059801:intron 35.0%
ACTATAGGATCTTAGTAGGA+TGG + chr2.4:18992583-18992602 MS.gene059801:intron 35.0%
AGAACATGTCTTAGATAGTC+TGG + chr2.4:18992997-18993016 MS.gene059801:intron 35.0%
AGAAGGTAGTCTGTAAAATG+AGG - chr2.4:18992263-18992282 None:intergenic 35.0%
AGATATGCACAACTTTAGAC+AGG - chr2.4:18991609-18991628 None:intergenic 35.0%
AGCATAGAATTGTTACCCTT+TGG + chr2.4:18994382-18994401 MS.gene059801:intron 35.0%
AGGAAATGATTGTGTAATCG+TGG + chr2.4:18992308-18992327 MS.gene059801:intron 35.0%
AGTGACGAGTAGTAAGAAAA+TGG + chr2.4:18989883-18989902 MS.gene059801:intron 35.0%
AGTTGGGGATATTATATTGC+AGG + chr2.4:18991363-18991382 MS.gene059801:CDS 35.0%
ATATAGCAAACTTCACCTGA+TGG + chr2.4:18993349-18993368 MS.gene059801:intron 35.0%
ATATTGCTGAATTGGACCAA+AGG + chr2.4:18988871-18988890 MS.gene059801:intron 35.0%
ATGAGGGAATACATGACATT+GGG + chr2.4:18989622-18989641 MS.gene059801:intron 35.0%
ATGGATGAGGCTATTTGAAT+TGG + chr2.4:18994013-18994032 MS.gene059801:intron 35.0%
ATGTCATGTATTCCCTCATA+TGG - chr2.4:18989621-18989640 None:intergenic 35.0%
ATTTGGAAAGACAGCCAAAA+TGG - chr2.4:18991953-18991972 None:intergenic 35.0%
CAGTGTCAACATTTGATGTA+TGG + chr2.4:18990770-18990789 MS.gene059801:intron 35.0%
CATACATCAAATGTTGACAC+TGG - chr2.4:18990772-18990791 None:intergenic 35.0%
CATCAAAATTGCTCAGTAGT+TGG - chr2.4:18990357-18990376 None:intergenic 35.0%
CGTAGTTTGAAGGTGAAAAT+TGG + chr2.4:18992479-18992498 MS.gene059801:intron 35.0%
CTTATATTCATAAGCTCTCC+AGG + chr2.4:18994088-18994107 MS.gene059801:intron 35.0%
GAATTCATTAGAGAAAGACG+TGG + chr2.4:18993093-18993112 MS.gene059801:intron 35.0%
GAGGGGTTAGAAAATTTGTA+TGG - chr2.4:18990917-18990936 None:intergenic 35.0%
GAGTTAAATGACCAAAACCT+TGG - chr2.4:18992880-18992899 None:intergenic 35.0%
GATATGCACAACTTTAGACA+GGG - chr2.4:18991608-18991627 None:intergenic 35.0%
GCAAACACTTTACTGTATCA+AGG - chr2.4:18991048-18991067 None:intergenic 35.0%
GCAAACTAAATGGTGAAAAG+AGG + chr2.4:18989808-18989827 MS.gene059801:intron 35.0%
GGCTGTTTAATCAACAACTA+TGG + chr2.4:18991552-18991571 MS.gene059801:intron 35.0%
GTATCACACTTTAAGTACCT+TGG + chr2.4:18992521-18992540 MS.gene059801:intron 35.0%
GTCTTCACAAGGAATATCTA+TGG + chr2.4:18991531-18991550 MS.gene059801:intron 35.0%
GTGAAAAGAGGTAACATGTA+TGG + chr2.4:18989820-18989839 MS.gene059801:intron 35.0%
GTTGTCCTTTCCATTCTATA+CGG - chr2.4:18990125-18990144 None:intergenic 35.0%
TAAGTGCAAGAAAATCAAGG+AGG - chr2.4:18994327-18994346 None:intergenic 35.0%
TACATGTGAAGCAATAGTGA+AGG + chr2.4:18988960-18988979 MS.gene059801:intron 35.0%
TAGCCTCAACTTAAAGTTTC+TGG + chr2.4:18991875-18991894 MS.gene059801:intron 35.0%
TATATCTAGATGGTTACCTG+TGG - chr2.4:18991011-18991030 None:intergenic 35.0%
TATATCTTCTCCATCAACCA+CGG - chr2.4:18990422-18990441 None:intergenic 35.0%
TATATGCTCTTTAGGCTGAA+CGG + chr2.4:18991094-18991113 MS.gene059801:intron 35.0%
TATGAGGGAATACATGACAT+TGG + chr2.4:18989621-18989640 MS.gene059801:intron 35.0%
TATTGCTGAATTGGACCAAA+GGG + chr2.4:18988872-18988891 MS.gene059801:intron 35.0%
TCATTGTTTGATGTCTGTGT+TGG + chr2.4:18989594-18989613 MS.gene059801:intron 35.0%
TCTTAGTAGGATGGATAAAC+TGG + chr2.4:18992592-18992611 MS.gene059801:intron 35.0%
TGAAATCTTAAATCCTGCAC+TGG - chr2.4:18993785-18993804 None:intergenic 35.0%
TGGATCCCAATTACTACAAA+AGG + chr2.4:18994546-18994565 MS.gene059801:CDS 35.0%
TGGGTCTGTCATAAAAAGTA+CGG + chr2.4:18992541-18992560 MS.gene059801:intron 35.0%
TTATATTACAGTCAGTGGGA+TGG - chr2.4:18989419-18989438 None:intergenic 35.0%
TTATGATGTGTCAGTGAAAG+TGG + chr2.4:18993042-18993061 MS.gene059801:intron 35.0%
TTTCACTTAGCTATCTGAGA+AGG + chr2.4:18989174-18989193 MS.gene059801:intron 35.0%
! ATTAAAGCATTAGCTCAAGG+AGG + chr2.4:18990981-18991000 MS.gene059801:CDS 35.0%
! CTAACAACCTCTCTTTTCAA+AGG + chr2.4:18988591-18988610 MS.gene059801:CDS 35.0%
! CTTCAGACTGAAAGTGTATT+TGG + chr2.4:18989468-18989487 MS.gene059801:intron 35.0%
! GACATTAAAGCATTAGCTCA+AGG + chr2.4:18990978-18990997 MS.gene059801:CDS 35.0%
! GTGGTTCCTTTTGTAGTAAT+TGG - chr2.4:18994555-18994574 None:intergenic 35.0%
! TAGCTATCTGAGAAGGTATA+TGG + chr2.4:18989181-18989200 MS.gene059801:intron 35.0%
! TCTTGTATCAGTTAGTGGAT+TGG + chr2.4:18994590-18994609 MS.gene059801:CDS 35.0%
! TGCATAGATTCTTTTAGCAC+TGG - chr2.4:18990939-18990958 None:intergenic 35.0%
! TGTATTGGGCTTGGAAATTT+TGG - chr2.4:18991198-18991217 None:intergenic 35.0%
! TGTGTATTTTTCCTTCACCA+AGG + chr2.4:18992860-18992879 MS.gene059801:intron 35.0%
! TTTTCTTACTACTCGTCACT+TGG - chr2.4:18989883-18989902 None:intergenic 35.0%
! TTTTTCCTTCACCAAGGTTT+TGG + chr2.4:18992866-18992885 MS.gene059801:intron 35.0%
!! AGAAGTTGATGTATTGCTCA+AGG + chr2.4:18990597-18990616 MS.gene059801:CDS 35.0%
!! ATAGATTCTTTTAGCACTGG+AGG - chr2.4:18990936-18990955 None:intergenic 35.0%
!! CTTGTATCAGTTAGTGGATT+GGG + chr2.4:18994591-18994610 MS.gene059801:CDS 35.0%
!! GAAGTTGATGTATTGCTCAA+GGG + chr2.4:18990598-18990617 MS.gene059801:CDS 35.0%
!! TACTTTTTATGACAGACCCA+AGG - chr2.4:18992541-18992560 None:intergenic 35.0%
!! TAGATTCTTTTAGCACTGGA+GGG - chr2.4:18990935-18990954 None:intergenic 35.0%
!! TGTCCAGAAACTTTAAGTTG+AGG - chr2.4:18991881-18991900 None:intergenic 35.0%
!! TTAAGTTGAGGCTAAACCAA+TGG - chr2.4:18991869-18991888 None:intergenic 35.0%
!!! GGTTTTGTTGGGTTAAGTTA+GGG + chr2.4:18991812-18991831 MS.gene059801:intron 35.0%
!!! TGGTTTTGTTGGGTTAAGTT+AGG + chr2.4:18991811-18991830 MS.gene059801:intron 35.0%
AAAACCAGCTTGTAAGGTGA+GGG - chr2.4:18991798-18991817 None:intergenic 40.0%
AAAGAAAACCCTGTGTCATG+AGG + chr2.4:18992741-18992760 MS.gene059801:intron 40.0%
AAAGGAACCACAATCAAGAG+TGG + chr2.4:18994564-18994583 MS.gene059801:CDS 40.0%
AAATGGACGACAACCAAGTT+AGG - chr2.4:18990849-18990868 None:intergenic 40.0%
AAATTGCTCAGTAGTTGGGA+AGG - chr2.4:18990352-18990371 None:intergenic 40.0%
AACGTCGACCAAATGATCAA+AGG - chr2.4:18990386-18990405 None:intergenic 40.0%
AAGATCTCCACTCTTGATTG+TGG - chr2.4:18994574-18994593 None:intergenic 40.0%
AATACATGACATTGGGGTTG+GGG + chr2.4:18989629-18989648 MS.gene059801:intron 40.0%
AATGACCAAAACCTTGGTGA+AGG - chr2.4:18992874-18992893 None:intergenic 40.0%
AATGGACGACAACCAAGTTA+GGG - chr2.4:18990848-18990867 None:intergenic 40.0%
AATGTCGTCTCCAAATTTCG+AGG + chr2.4:18992359-18992378 MS.gene059801:intron 40.0%
AATTGCTCAGTAGTTGGGAA+GGG - chr2.4:18990351-18990370 None:intergenic 40.0%
AATTGTCAGGGAGAAAGTTG+GGG + chr2.4:18991348-18991367 MS.gene059801:CDS 40.0%
ACATTAGAGCTAAGGGTTGA+AGG - chr2.4:18992902-18992921 None:intergenic 40.0%
ACTCGTCTGTTAGTGTTATG+TGG + chr2.4:18990047-18990066 MS.gene059801:intron 40.0%
ACTTTGTTACCTTGTTACCC+AGG + chr2.4:18992152-18992171 MS.gene059801:intron 40.0%
AGACTGTTAAGATGGATGAG+TGG + chr2.4:18992767-18992786 MS.gene059801:intron 40.0%
AGAGGTTGTTAGCATTGTTG+CGG - chr2.4:18988583-18988602 None:intergenic 40.0%
AGCTCAACACATTAGAGCTA+AGG - chr2.4:18992910-18992929 None:intergenic 40.0%
AGTATGTCTGATAGTTGGCT+TGG + chr2.4:18989856-18989875 MS.gene059801:intron 40.0%
AGTGAAGCATGTTCTTGAGA+TGG + chr2.4:18990648-18990667 MS.gene059801:CDS 40.0%
ATCAAACAATGACACGGACA+CGG - chr2.4:18989586-18989605 None:intergenic 40.0%
ATCAACAACTATGGCTGTCT+TGG + chr2.4:18991561-18991580 MS.gene059801:intron 40.0%
ATGATGAGTGGTAACATGTG+TGG + chr2.4:18989778-18989797 MS.gene059801:intron 40.0%
ATGCAGCATTGCAAGTCTTA+TGG - chr2.4:18992687-18992706 None:intergenic 40.0%
ATGGCAATGTACGTATCAAC+TGG + chr2.4:18994526-18994545 MS.gene059801:CDS 40.0%
ATGTATTGCTCAAGGGAGTT+GGG + chr2.4:18990605-18990624 MS.gene059801:CDS 40.0%
ATGTCGTCTCCAAATTTCGA+GGG + chr2.4:18992360-18992379 MS.gene059801:intron 40.0%
CAACTATGTTGACGATCCAT+TGG + chr2.4:18991850-18991869 MS.gene059801:intron 40.0%
CAAGCATCATTTCACTATGC+AGG - chr2.4:18993959-18993978 None:intergenic 40.0%
CAGACATACTTTCAAGAGAC+TGG - chr2.4:18989846-18989865 None:intergenic 40.0%
CATGTGAAGCAATAGTGAAG+GGG + chr2.4:18988962-18988981 MS.gene059801:intron 40.0%
CTCAATGCCGAAATAACATC+TGG - chr2.4:18991162-18991181 None:intergenic 40.0%
CTCGTCTGTTAGTGTTATGT+GGG + chr2.4:18990048-18990067 MS.gene059801:intron 40.0%
CTGCATAGTGAAATGATGCT+TGG + chr2.4:18993957-18993976 MS.gene059801:intron 40.0%
CTTGTGAGACTATTTGACAC+AGG - chr2.4:18989255-18989274 None:intergenic 40.0%
CTTTGTTACCTTGTTACCCA+GGG + chr2.4:18992153-18992172 MS.gene059801:intron 40.0%
GAAACTTTACCCACACACTA+AGG + chr2.4:18989042-18989061 MS.gene059801:intron 40.0%
GAAGAATGCCAAAGTATGCT+TGG + chr2.4:18989928-18989947 MS.gene059801:intron 40.0%
GAAGACCGTATAGAATGGAA+AGG + chr2.4:18990117-18990136 MS.gene059801:intron 40.0%
GAATACATGACATTGGGGTT+GGG + chr2.4:18989628-18989647 MS.gene059801:intron 40.0%
GAATTGTCAGGGAGAAAGTT+GGG + chr2.4:18991347-18991366 MS.gene059801:CDS 40.0%
GCAAGAAATTCTACAAGCTC+TGG - chr2.4:18992207-18992226 None:intergenic 40.0%
GCTCAACACATTAGAGCTAA+GGG - chr2.4:18992909-18992928 None:intergenic 40.0%
GGAGATCTTGTATCAGTTAG+TGG + chr2.4:18994585-18994604 MS.gene059801:CDS 40.0%
GGATCAGAAAAGTCTTCACA+AGG + chr2.4:18991520-18991539 MS.gene059801:intron 40.0%
GGTTAAGATGGGTCTTGATT+TGG + chr2.4:18989904-18989923 MS.gene059801:intron 40.0%
GTAACCTGAAGAAGTGGAAA+AGG - chr2.4:18988639-18988658 None:intergenic 40.0%
GTGTTAAAGACTTACACTCG+AGG + chr2.4:18990009-18990028 MS.gene059801:intron 40.0%
TAGAGAGTAACCTGAAGAAG+TGG - chr2.4:18988645-18988664 None:intergenic 40.0%
TAGCCTACAACGAAGTCAAA+TGG - chr2.4:18990866-18990885 None:intergenic 40.0%
TAGTAGGATGGATAAACTGG+AGG + chr2.4:18992595-18992614 MS.gene059801:intron 40.0%
TATGGAGATAAGCTGAAAGC+AGG + chr2.4:18989199-18989218 MS.gene059801:intron 40.0%
TCTTGGTACAGGAATTGTCA+GGG + chr2.4:18991336-18991355 MS.gene059801:CDS 40.0%
TGAACGAAGACCGTATAGAA+TGG + chr2.4:18990112-18990131 MS.gene059801:intron 40.0%
TGAGGATGAGACTGTTAAGA+TGG + chr2.4:18992759-18992778 MS.gene059801:intron 40.0%
TGAGGGAATACATGACATTG+GGG + chr2.4:18989623-18989642 MS.gene059801:intron 40.0%
TGCTTATGGTTGTAGTACAC+TGG + chr2.4:18993891-18993910 MS.gene059801:intron 40.0%
TGGAGATGTGGCAAACTAAA+TGG + chr2.4:18989798-18989817 MS.gene059801:intron 40.0%
TGTATTTCTCCAACCCAACA+TGG + chr2.4:18988837-18988856 MS.gene059801:intron 40.0%
TTCATTAGAGAAAGACGTGG+TGG + chr2.4:18993096-18993115 MS.gene059801:intron 40.0%
TTCTACTTGGATGGAAACAC+AGG - chr2.4:18989381-18989400 None:intergenic 40.0%
TTCTTGGTACAGGAATTGTC+AGG + chr2.4:18991335-18991354 MS.gene059801:CDS 40.0%
! AGCAATAGTGAAGGGGATTT+TGG + chr2.4:18988969-18988988 MS.gene059801:intron 40.0%
! CACTATGCAGGAACAGATTT+TGG - chr2.4:18993947-18993966 None:intergenic 40.0%
! CATGTTTTCACGGGCTTATA+TGG + chr2.4:18989655-18989674 MS.gene059801:intron 40.0%
! GGGTCTGTCATAAAAAGTAC+GGG + chr2.4:18992542-18992561 MS.gene059801:intron 40.0%
! TAAAGTTTCTGGACATGACC+TGG + chr2.4:18991886-18991905 MS.gene059801:intron 40.0%
! TAAGGGTCCTTTGAAAAGAG+AGG - chr2.4:18988601-18988620 None:intergenic 40.0%
! TTGCAAGTCTTATGGCCATA+CGG - chr2.4:18992679-18992698 None:intergenic 40.0%
!! AGAGTTATTATTGGTGCCAG+TGG + chr2.4:18990250-18990269 MS.gene059801:intron 40.0%
!! AGATTCTTTTAGCACTGGAG+GGG - chr2.4:18990934-18990953 None:intergenic 40.0%
!! CAGATGTTATTTCGGCATTG+AGG + chr2.4:18991160-18991179 MS.gene059801:CDS 40.0%
!! CAGTTGAGCATTGAATACTC+GGG + chr2.4:18989967-18989986 MS.gene059801:intron 40.0%
!! GCAGTTGAGCATTGAATACT+CGG + chr2.4:18989966-18989985 MS.gene059801:intron 40.0%
!!! ACCTTACAAGCTGGTTTTGT+TGG + chr2.4:18991800-18991819 MS.gene059801:intron 40.0%
!!! CCTTACAAGCTGGTTTTGTT+GGG + chr2.4:18991801-18991820 MS.gene059801:intron 40.0%
!!! GCAGGAACAGATTTTGGAAT+AGG - chr2.4:18993941-18993960 None:intergenic 40.0%
AAACCAGCTTGTAAGGTGAG+GGG - chr2.4:18991797-18991816 None:intergenic 45.0%
AATGCTCAACTGCCACTCAA+CGG - chr2.4:18989959-18989978 None:intergenic 45.0%
ACACTCGAGGATGAGATTGT+TGG + chr2.4:18990022-18990041 MS.gene059801:intron 45.0%
ACTGTGCTCTGTGCACAAAA+TGG + chr2.4:18991424-18991443 MS.gene059801:intron 45.0%
AGAATTTCTTGCGTCAGCAC+TGG + chr2.4:18992215-18992234 MS.gene059801:CDS 45.0%
AGGAGAGAAGATGAGAGGTA+AGG - chr2.4:18988619-18988638 None:intergenic 45.0%
AGTCTCATCCTCATGACACA+GGG - chr2.4:18992752-18992771 None:intergenic 45.0%
ATTCCTGCACCCTCGAAATT+TGG - chr2.4:18992372-18992391 None:intergenic 45.0%
ATTCTAGACTGTCACAAGCC+TGG + chr2.4:18990710-18990729 MS.gene059801:intron 45.0%
ATTGCTCAGTAGTTGGGAAG+GGG - chr2.4:18990350-18990369 None:intergenic 45.0%
ATTGTGTTCCTAAAGGGGGT+TGG - chr2.4:18992935-18992954 None:intergenic 45.0%
CAAAACCAGCTTGTAAGGTG+AGG - chr2.4:18991799-18991818 None:intergenic 45.0%
CAAACAGAGCCTTAGTGTGT+GGG - chr2.4:18989054-18989073 None:intergenic 45.0%
CAAGAAAATCAAGGAGGAGC+AGG - chr2.4:18994321-18994340 None:intergenic 45.0%
CAGTTTGAACCTTGCTCTCA+TGG + chr2.4:18991295-18991314 MS.gene059801:CDS 45.0%
CATGAGAGCAAGGTTCAAAC+TGG - chr2.4:18991297-18991316 None:intergenic 45.0%
CCCAACAAAACCAGCTTGTA+AGG - chr2.4:18991804-18991823 None:intergenic 45.0%
CGAAGCTAGTTGACATGATC+AGG + chr2.4:18993809-18993828 MS.gene059801:CDS 45.0%
CTCTTGATTATGAACCGCCA+AGG + chr2.4:18993617-18993636 MS.gene059801:CDS 45.0%
CTGGATGTCCAACAGAAATC+CGG - chr2.4:18991122-18991141 None:intergenic 45.0%
CTGTACCAAGAATTGAGCCA+AGG - chr2.4:18991327-18991346 None:intergenic 45.0%
CTTGGCTCAATTCTTGGTAC+AGG + chr2.4:18991325-18991344 MS.gene059801:CDS 45.0%
GAAATCATGATTGTGAGCGG+TGG + chr2.4:18989719-18989738 MS.gene059801:intron 45.0%
GACTTCCTTGGCTCAATTCT+TGG + chr2.4:18991319-18991338 MS.gene059801:CDS 45.0%
GATGTATTGCTCAAGGGAGT+TGG + chr2.4:18990604-18990623 MS.gene059801:CDS 45.0%
GATTTAGATAGGGTGCAGAG+TGG + chr2.4:18990168-18990187 MS.gene059801:intron 45.0%
GGAAAAGGAGAGAAGATGAG+AGG - chr2.4:18988624-18988643 None:intergenic 45.0%
GGAATACATGACATTGGGGT+TGG + chr2.4:18989627-18989646 MS.gene059801:intron 45.0%
GGAATTGTCAGGGAGAAAGT+TGG + chr2.4:18991346-18991365 MS.gene059801:CDS 45.0%
GGAGAGAAGATGAGAGGTAA+GGG - chr2.4:18988618-18988637 None:intergenic 45.0%
GGATCACTTGTCAGTTCATC+TGG - chr2.4:18991141-18991160 None:intergenic 45.0%
TCATCATCACCATGTTGGGT+TGG - chr2.4:18988849-18988868 None:intergenic 45.0%
TGCTGCACATACATAACCAC+TGG - chr2.4:18990269-18990288 None:intergenic 45.0%
TGGTAACATGTGTGGAGATG+TGG + chr2.4:18989786-18989805 MS.gene059801:intron 45.0%
TGTATTGCTCAAGGGAGTTG+GGG + chr2.4:18990606-18990625 MS.gene059801:CDS 45.0%
TGTTATGTGGGCGTGAATGA+AGG + chr2.4:18990060-18990079 MS.gene059801:intron 45.0%
TTGGATGGAAACACAGGTCA+TGG - chr2.4:18989375-18989394 None:intergenic 45.0%
! CGTCCATTTGACTTCGTTGT+AGG + chr2.4:18990860-18990879 MS.gene059801:intron 45.0%
! CTCTCCTTTTCCACTTCTTC+AGG + chr2.4:18988632-18988651 MS.gene059801:CDS 45.0%
! GAGTGTGGCTTGTAAAGTGA+GGG - chr2.4:18993500-18993519 None:intergenic 45.0%
! GGTATCTTGGTGCAAGTTAC+AGG - chr2.4:18993589-18993608 None:intergenic 45.0%
! GTCTGTGTTGGTCCATATGA+GGG + chr2.4:18989606-18989625 MS.gene059801:intron 45.0%
! GTGGATTAATGTGGTACCCT+TGG + chr2.4:18990187-18990206 MS.gene059801:intron 45.0%
! GTTGGGGAGACATGTTTTCA+CGG + chr2.4:18989645-18989664 MS.gene059801:intron 45.0%
! TCGGGAAAGGTTTTTGTACG+AGG + chr2.4:18989985-18990004 MS.gene059801:intron 45.0%
! TGAGTGTGGCTTGTAAAGTG+AGG - chr2.4:18993501-18993520 None:intergenic 45.0%
! TGTCTGTGTTGGTCCATATG+AGG + chr2.4:18989605-18989624 MS.gene059801:intron 45.0%
! TGTGCACAGAGCACAGTTTT+AGG - chr2.4:18991421-18991440 None:intergenic 45.0%
! TTGGGGAGACATGTTTTCAC+GGG + chr2.4:18989646-18989665 MS.gene059801:intron 45.0%
!! ATTTGGTGTCCGACTTGAGT+TGG + chr2.4:18989485-18989504 MS.gene059801:intron 45.0%
!! GAAGGGGATTTTGGTACTGA+AGG + chr2.4:18988978-18988997 MS.gene059801:intron 45.0%
!! GAGCATTGAATACTCGGGAA+AGG + chr2.4:18989972-18989991 MS.gene059801:intron 45.0%
!! GGAGAGCACCTATATCTAGA+TGG - chr2.4:18991021-18991040 None:intergenic 45.0%
!!! CGTTTTTTGAAGAAGCACCG+TGG + chr2.4:18990402-18990421 MS.gene059801:intron 45.0%
!! ACAATTAAAAAAAAAAAAAT+TGG - chr2.4:18993708-18993727 None:intergenic 5.0%
!! TAAACAAAAAAATATATATT+TGG - chr2.4:18991970-18991989 None:intergenic 5.0%
!!! TTTTTTATAAAATAAATTGT+GGG + chr2.4:18988752-18988771 MS.gene059801:intron 5.0%
AGCTCAAGGAGGTTATCCAC+AGG + chr2.4:18990992-18991011 MS.gene059801:CDS 50.0%
AGGAAGTCACCATGAGAGCA+AGG - chr2.4:18991307-18991326 None:intergenic 50.0%
AGTCGGACACCAACTCAAGT+CGG - chr2.4:18989497-18989516 None:intergenic 50.0%
AGTCTGGACATGTGTCAGAG+AGG + chr2.4:18993013-18993032 MS.gene059801:intron 50.0%
ATGATTGTGAGCGGTGGTAC+TGG + chr2.4:18989725-18989744 MS.gene059801:intron 50.0%
ATGCTCAACTGCCACTCAAC+GGG - chr2.4:18989958-18989977 None:intergenic 50.0%
CAGTCTCATCCTCATGACAC+AGG - chr2.4:18992753-18992772 None:intergenic 50.0%
CCAAACAGAGCCTTAGTGTG+TGG - chr2.4:18989055-18989074 None:intergenic 50.0%
CCAAGCAGTTCCAAAGCTAG+TGG - chr2.4:18988510-18988529 None:intergenic 50.0%
CCACACACTAAGGCTCTGTT+TGG + chr2.4:18989052-18989071 MS.gene059801:intron 50.0%
CGGGAACACCAAGCATACTT+TGG - chr2.4:18989939-18989958 None:intergenic 50.0%
CTCTTGACGATACAGGAGCA+AGG - chr2.4:18990234-18990253 None:intergenic 50.0%
CTTGTTACCCAGGGAGAACA+GGG + chr2.4:18992162-18992181 MS.gene059801:intron 50.0%
GAACCGCCAAGGTAACATCT+TGG + chr2.4:18993628-18993647 MS.gene059801:intron 50.0%
GCTGCATGCAGCTGAATGTT+GGG + chr2.4:18992700-18992719 MS.gene059801:intron 50.0%
GCTTTCTGACGTGCAGATTC+AGG + chr2.4:18990544-18990563 MS.gene059801:intron 50.0%
TGCTCTCATGGTGACTTCCT+TGG + chr2.4:18991307-18991326 MS.gene059801:CDS 50.0%
TGCTGCATGCAGCTGAATGT+TGG + chr2.4:18992699-18992718 MS.gene059801:intron 50.0%
! GCTGCAACTACCACTAGCTT+TGG + chr2.4:18988497-18988516 MS.gene059801:CDS 50.0%
! GCTGGTTTCGTAAGCTATCC+TGG - chr2.4:18994109-18994128 None:intergenic 50.0%
! TCTCCAAATTTCGAGGGTGC+AGG + chr2.4:18992366-18992385 MS.gene059801:intron 50.0%
! TCTTGCGTCAGCACTGGATA+AGG + chr2.4:18992221-18992240 MS.gene059801:CDS 50.0%
!! CCACTAGCTTTGGAACTGCT+TGG + chr2.4:18988507-18988526 MS.gene059801:CDS 50.0%
!! GGGTGCAGAGTGGATTAATG+TGG + chr2.4:18990178-18990197 MS.gene059801:intron 50.0%
!! TGAAGAAGCACCGTGGTTGA+TGG + chr2.4:18990409-18990428 MS.gene059801:intron 50.0%
ACACCCCTCACCTTACAAGC+TGG + chr2.4:18991791-18991810 MS.gene059801:intron 55.0%
CCAAGGTAACATCTTGGCCC+TGG + chr2.4:18993634-18993653 MS.gene059801:intron 55.0%
CCAGGGCCAAGATGTTACCT+TGG - chr2.4:18993637-18993656 None:intergenic 55.0%
CCTGTTCTCCCTGGGTAACA+AGG - chr2.4:18992164-18992183 None:intergenic 55.0%
CCTTGTTACCCAGGGAGAAC+AGG + chr2.4:18992161-18992180 MS.gene059801:intron 55.0%
CTCTTTAGGCTGAACGGTGC+CGG + chr2.4:18991100-18991119 MS.gene059801:intron 55.0%
CTGGACATGTGTCAGAGAGG+AGG + chr2.4:18993016-18993035 MS.gene059801:intron 55.0%
GGGCCAAGATGTTACCTTGG+CGG - chr2.4:18993634-18993653 None:intergenic 55.0%
GGTACAAGCAACCGAGCAAG+TGG + chr2.4:18989746-18989765 MS.gene059801:intron 55.0%
GTTGATGCAGTAGCCAGTGC+AGG + chr2.4:18993769-18993788 MS.gene059801:CDS 55.0%
TGAGCTAGCCAACCCCCTTT+AGG + chr2.4:18992924-18992943 MS.gene059801:intron 55.0%
! GAACGGTGCCGGATTTCTGT+TGG + chr2.4:18991111-18991130 MS.gene059801:CDS 55.0%
!! TGCTTGGTGTTCCCGTTGAG+TGG + chr2.4:18989944-18989963 MS.gene059801:intron 55.0%
AAGCAACCGAGCAAGTGGCG+TGG + chr2.4:18989751-18989770 MS.gene059801:intron 60.0%
AGCAACCGAGCAAGTGGCGT+GGG + chr2.4:18989752-18989771 MS.gene059801:intron 60.0%
ATCAGCCCACGCCACTTGCT+CGG - chr2.4:18989760-18989779 None:intergenic 60.0%
CTGAGCACCCTGTTCTCCCT+GGG - chr2.4:18992172-18992191 None:intergenic 60.0%
TCTGAGCACCCTGTTCTCCC+TGG - chr2.4:18992173-18992192 None:intergenic 60.0%
! TGGCGTGGGCTGATGATGAG+TGG + chr2.4:18989766-18989785 MS.gene059801:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 18988494 18994623 18988494 ID=MS.gene059801
chr2.4 mRNA 18988494 18994623 18988494 ID=MS.gene059801.t1;Parent=MS.gene059801
chr2.4 exon 18988494 18988653 18988494 ID=MS.gene059801.t1.exon1;Parent=MS.gene059801.t1
chr2.4 CDS 18988494 18988653 18988494 ID=cds.MS.gene059801.t1;Parent=MS.gene059801.t1
chr2.4 exon 18990560 18990669 18990560 ID=MS.gene059801.t1.exon2;Parent=MS.gene059801.t1
chr2.4 CDS 18990560 18990669 18990560 ID=cds.MS.gene059801.t1;Parent=MS.gene059801.t1
chr2.4 exon 18990882 18991013 18990882 ID=MS.gene059801.t1.exon3;Parent=MS.gene059801.t1
chr2.4 CDS 18990882 18991013 18990882 ID=cds.MS.gene059801.t1;Parent=MS.gene059801.t1
chr2.4 exon 18991108 18991181 18991108 ID=MS.gene059801.t1.exon4;Parent=MS.gene059801.t1
chr2.4 CDS 18991108 18991181 18991108 ID=cds.MS.gene059801.t1;Parent=MS.gene059801.t1
chr2.4 exon 18991279 18991384 18991279 ID=MS.gene059801.t1.exon5;Parent=MS.gene059801.t1
chr2.4 CDS 18991279 18991384 18991279 ID=cds.MS.gene059801.t1;Parent=MS.gene059801.t1
chr2.4 exon 18992174 18992242 18992174 ID=MS.gene059801.t1.exon6;Parent=MS.gene059801.t1
chr2.4 CDS 18992174 18992242 18992174 ID=cds.MS.gene059801.t1;Parent=MS.gene059801.t1
chr2.4 exon 18993574 18993638 18993574 ID=MS.gene059801.t1.exon7;Parent=MS.gene059801.t1
chr2.4 CDS 18993574 18993638 18993574 ID=cds.MS.gene059801.t1;Parent=MS.gene059801.t1
chr2.4 exon 18993732 18993830 18993732 ID=MS.gene059801.t1.exon8;Parent=MS.gene059801.t1
chr2.4 CDS 18993732 18993830 18993732 ID=cds.MS.gene059801.t1;Parent=MS.gene059801.t1
chr2.4 exon 18994524 18994623 18994524 ID=MS.gene059801.t1.exon9;Parent=MS.gene059801.t1
chr2.4 CDS 18994524 18994623 18994524 ID=cds.MS.gene059801.t1;Parent=MS.gene059801.t1
Gene Sequence

>MS.gene059801

ATGGCTGCAACTACCACTAGCTTTGGAACTGCTTGGTGTCTTAGAAGAGTAACTCAAGCTTTTGCACTTTCTCATTCTCATAATCTCCGCAACAATGCTAACAACCTCTCTTTTCAAAGGACCCTTACCTCTCATCTTCTCTCCTTTTCCACTTCTTCAGGTTACTCTCTACTTTCTTCATCCATTTCTATTTTTTTTTTTTTGTAGGTTGATTCTATTTGGCATTACCATTATGTTCAATTGTTCAAAATCATAGTCTTTTTTATAAAATAAATTGTGGGTTTTGAATGAAATTGTTTTTTTTTTGTCCATTATTTAATTTATTTTCAGTTACATGAATTAGTGTATTTCTCCAACCCAACATGGTGATGATGAATATATTGCTGAATTGGACCAAAGGGTTTCATAAATTGTAGTAAAGTTTAAAACTTGGTGTTTGTAATTTTTCAAAAGTCATAAACTTTGCTACATGTGAAGCAATAGTGAAGGGGATTTTGGTACTGAAGGATATATTATGTACTATGTTGTTATGAGCTTGTGTTATTAGTGAAACTTTACCCACACACTAAGGCTCTGTTTGGATAAACAACTAAATTAAACACTTATAACATAAGCGCTTACCATATAAGTGCTTATCTATAAGCTATTTCTACTACAAAAGATAAAATAAAGTCAAGTTGTTTCACTTAGCTATCTGAGAAGGTATATGGAGATAAGCTGAAAGCAGGTCATGAACATATCATAAACGGTTTCTATAACCTGTGTCAAATAGTCTCACAAGTATTAATGTCAGTTGATAAACTCAAATAAGTCAATCCAAACAAACCCTAAAATCAAAATGAAGTGCTTGACTGATCAATTAATCAAATCAACTTGAGCCATGACCTGTGTTTCCATCCAAGTAGAAACTTAAGTTTGAATTCCATCCCACTGACTGTAATATAACACAACTTGAATCATATTTAGCATTGACACTTCAGACTGAAAGTGTATTTGGTGTCCGACTTGAGTTGGTGTCCGACTTGTGATTACATTCATTCACTTTCCTAAAGTATTATGGTGTCTACTTGTCAGTGTCGTGTCTGACATCCGTGTCCGTGTCATTGTTTGATGTCTGTGTTGGTCCATATGAGGGAATACATGACATTGGGGTTGGGGAGACATGTTTTCACGGGCTTATATGGAATGAGAATCAATGGCTTTGATCTGATTCAATAGTATTAAAGAAATCATGATTGTGAGCGGTGGTACTGGTACAAGCAACCGAGCAAGTGGCGTGGGCTGATGATGAGTGGTAACATGTGTGGAGATGTGGCAAACTAAATGGTGAAAAGAGGTAACATGTATGGCCAGTCTCTTGAAAGTATGTCTGATAGTTGGCTTGGTCCAAGTGACGAGTAGTAAGAAAATGGTTAAGATGGGTCTTGATTTGGTGAAGAATGCCAAAGTATGCTTGGTGTTCCCGTTGAGTGGCAGTTGAGCATTGAATACTCGGGAAAGGTTTTTGTACGAGGAGTGTTAAAGACTTACACTCGAGGATGAGATTGTTGGTAACTCGTCTGTTAGTGTTATGTGGGCGTGAATGAAGGAGTTTCACATTGTTTATTATTGGACAAGGTGAACGAAGACCGTATAGAATGGAAAGGACAACGAAACTAATACCTTAAGGTTTTTGATTTAGATAGGGTGCAGAGTGGATTAATGTGGTACCCTTGGTAAGTTCTTCATTACATATCTCCTTGCTCCTGTATCGTCAAGAGTTATTATTGGTGCCAGTGGTTATGTATGTGCAGCAGATATTTCAGTAGTAATGTTTATGACTGGATAACTTTTAAATCACGTGATTTTGCATTCCCCTTCCCAACTACTGAGCAATTTTGATGATTTATCCTTTGATCATTTGGTCGACGTTTTTTGAAGAAGCACCGTGGTTGATGGAGAAGATATATTCATAACTACTTTTGAGTTGTAGTTCATTATAATATGTATTTCTTCTTAGCTAAATCATTATTTTGGCATCTCAATGTCGATCCAGTTTCACATTTTTAATGCTTTCTGACGTGCAGATTCAGGTGCAAGCACGACAGTGCATGCTTCAAAACGAGAAGTTGATGTATTGCTCAAGGGAGTTGGGGAGAAAAGTGTAGAAAATGAAGTGAAGCATGTTCTTGAGATGGTACTTTCTTGTTTTTTATCCCTTGATCCATACAAATTTCATTCTAGACTGTCACAAGCCTGGAACTTTTTTTTCTACATGGAAGTCTAATATTCATTACCAGTGTCAACATTTGATGTATGGTTCGGCCTTTGAGCCATTATATATCATTTTATGCTATAGAACATCATTTGATCCCTAACTTGGTTGTCGTCCATTTGACTTCGTTGTAGGCTAGACGAGCATCATTAAAACGAGAGATTCTCCATACAAATTTTCTAACCCCTCCAGTGCTAAAAGAATCTATGCAAGTATTGGAAAAATTAGCGGACATTAAAGCATTAGCTCAAGGAGGTTATCCACAGGTAACCATCTAGATATAGGTGCTCTCCATTACCTTGATACAGTAAAGTGTTTGCATCGTATCGCTTGTAGACACATAATATATATGCTCTTTAGGCTGAACGGTGCCGGATTTCTGTTGGACATCCAGATGAACTGACAAGTGATCCAGATGTTATTTCGGCATTGAGGTAAACTTTGTTACCAAAATTTCCAAGCCCAATACAGAAATTGTTGATGCTCCTAGATGCCTTTCATAGTATATTTAGATAAAATTACTCTTTTCAGCATTACAGGGAACTTCCAGTTTGAACCTTGCTCTCATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTGTCAGGGAGAAAGTTGGGGATATTATATTGCAGGTATTCTATAGTTTTCGCCATTTACTACTTTTACCTAAAACTGTGCTCTGTGCACAAAATGGTATTAACTTAAGAATTGAATAATATTATTATTATTATTTAAACACGTTCATATGATATTTTATATACAACAAAGGATCAGAAAAGTCTTCACAAGGAATATCTATGGCTGTTTAATCAACAACTATGGCTGTCTTGGCCTGTGTATATAGTAAAAGATCCCTGTCTAAAGTTGTGCATATCTCTCATATTAATTAATGACTTCATTTTGTTGTTTTACGACTCTATATTCTATTATAATGTAAAATTAATCGCAGAGTGCATCTGAACAAAGTTAAATCATTGTGACTGGTGAGAGTTCTACATTAGACGTGACATGACCTCAAAAAATGTTTATAAGTGGGAGACACCCCTCACCTTACAAGCTGGTTTTGTTGGGTTAAGTTAGGGAACTACTTTAGTTTGCAACTATGTTGACGATCCATTGGTTTAGCCTCAACTTAAAGTTTCTGGACATGACCTGGATTAAATTATTTTATTTTCATCCATTATATGTTTTATTTGACCATTTTGGCTGTCTTTCCAAATATATATTTTTTTGTTTATTTTCGCAATGTGCATATGATACCCAATTAAGAAAGATATAGAGATTAATGAGCTGGATAAAGATGTGATAAACGATAGAACATTATGACGTCTTTTGATAGTTGTTGTTTTTGTATTTTCGCAATGTGCATATAAAACCCTTCGTATTTTGTATAACTTTGACTTTGTTACCTTGTTACCCAGGGAGAACAGGGTGCTCAGATAATTGTTGTACCAGAGCTTGTAGAATTTCTTGCGTCAGCACTGGATAAGGTAATGTTCTTGACTTACCTCATTTTACAGACTACCTTCTTAATAAATTTACGTATCAAAACAAAAGGAAATGATTGTGTAATCGTGGTGATGAGTATATCATTAATGTTGATATGAATGTCGTCTCCAAATTTCGAGGGTGCAGGAATTTTTTAAAATCTCGGATGAGTGTAGCAGACTATTCATAAAATATCACAAAAATGTTTTTATTCCTCTGAATAAATATTACTAAATTTCGTAGTTTGAAGGTGAAAATTGGACAACAGACAATAGCACAAGTATCACACTTTAAGTACCTTGGGTCTGTCATAAAAAGTACGGGAAGATAAAAGAACTTTTTACTATAGGATCTTAGTAGGATGGATAAACTGGAGGAATGCTTCTAGTGTGATCTGCGATAAAGAAACGTTATTCAAGTTTAAAGGAAATTATACCGTATGGCCATAAGACTTGCAATGCTGCATGCAGCTGAATGTTGGGTCATGAAGAAACAATAAGAAAGAAAACCCTGTGTCATGAGGATGAGACTGTTAAGATGGATGAGTGGTCAAACATGACAAGATAGAATTAGGAATACAATCTTTTTATTGGATAGACTAATGTTAGTATATTAGGTATGTGTATTTTTCCTTCACCAAGGTTTTGGTCATTTAACTCCTTCAACCCTTAGCTCTAATGTGTTGAGCTAGCCAACCCCCTTTAGGAACACAATTATAAAACGAAATGCGGTAGCTAGAATTCCAGAAAAGATGATAGAACATGTCTTAGATAGTCTGGACATGTGTCAGAGAGGAGGATGTTATGATGTGTCAGTGAAAGTGGAGACACAAGACAAGATATTCTCGAAAATGAATTCATTAGAGAAAGACGTGGTGGCACTTGTTATGAAAAAATTGACAGAATCCTTTAACTTAAGTGATTTGGGAAAATGTGGAGAAGATTTGTAGAAGATCTAGTAAAGAAAGTAGATCATATGGGAGGTAGTTCAATTGTTAAAGCCTTAAAGGTGAATAAGAACTATTGATCAAATCATTGAAAAGGATTCAGATTTAAATGGTTTGTAAATTATGTGTCAACATACATGATTTATGTTTTTTTTTCTTTCTATATAGCAAACTTCACCTGATGGAAAGTTTTTTTTTCTTTTTCTGTGTGCGGCTTTCGAGCAGTTTGTTGTGTTAGTGTTGCTAATTGTTGAGAAGTTCCACATTATATGTGATATGACTTGAAATTGTGTTTATAAATGGGAGACATCCCTCACTTTACAAGCCACACTCAATTCAAATCTTAAGAATAATTATCTTCTGATTGCATTCTTCTTATTCATTCAGGTTCGTAATGTTCCTGTAACTTGCACCAAGATACCATTAATTTCTCTTGATTATGAACCGCCAAGGTAACATCTTGGCCCTGGTTTGAAGTTGACATAAAAATAGCACTTAACTGTGTGATTCAGACTTCACCAATTTTTTTTTTTTTAATTGTGCAGAACAAAATCATTCAAAACTATAGAAGCGTCACTAAGAGTTGATGCAGTAGCCAGTGCAGGATTTAAGATTTCACGTTCGAAGCTAGTTGACATGATCAGGTTCGCAATCCCTAATTTGTGTATATATGATGTCTGTGGAATATTATTGAATTCTTGATTTGCTTATGGTTGTAGTACACTGGTCCTTGAGAACTTGTTTTCTGAATCCTATTCCAAAATCTGTTCCTGCATAGTGAAATGATGCTTGGTCATAAAACGTTGTACATAACATAAGTCAATATATGGATGAGGCTATTTGAATTGGCTTATTTGAGCTTATGAAAACAGTTTATGACATATCCATAAGCTGTTTTCAGCTTATATTCATAAGCTCTCCAGGATAGCTTACGAAACCAGCTCATAAGTTTTATAACTTATATGAAAACAATTTGACTTTATTTTATCTTATGTTACAGAAATAGTTTTTATATAAGCACTTGTGTGATAAGAGTTTATGCTTTAAGCGCTTAATTAAGTTGTGTATCCAAATAGAGCATAAATTTAATGTCTCTGACTATGATTAGCTTTATTTTCAGCAGTTTCTTAGCCTGCTCCTCCTTGATTTTCTTGCACTTATTTCAAAGTTTTCATTATCTAGAAATGTATTCTCGAGCATAGAATTGTTACCCTTTGGTTATTTTGGCATATGACATGCTTGTTTTAGCATGATTTATACTATATAAACTCTTTTGCATGAAATATTTTGGCTTACATTATTATATGATGATTGTGCTAAACATATTGTGCTCATAGCAATGGCAATGTACGTATCAACTGGATCCCAATTACTACAAAAGGAACCACAATCAAGAGTGGAGATCTTGTATCAGTTAGTGGATTGGGAAGATTAAAG

Protein sequence

>MS.gene059801.t1

MAATTTSFGTAWCLRRVTQAFALSHSHNLRNNANNLSFQRTLTSHLLSFSTSSDSGASTTVHASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMQVLEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGSILGTGIVREKVGDIILQGEQGAQIIVVPELVEFLASALDKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASLRVDAVASAGFKISRSKLVDMISNGNVRINWIPITTKGTTIKSGDLVSVSGLGRLK