Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92445.t1 | XP_003627797.2 | 95.4 | 367 | 16 | 1 | 1 | 366 | 1 | 367 | 4.80E-198 | 700.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92445.t1 | Q8L7A4 | 65.2 | 353 | 112 | 3 | 14 | 366 | 44 | 385 | 1.4e-126 | 454.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92445.t1 | G7LFA5 | 95.4 | 367 | 16 | 1 | 1 | 366 | 1 | 367 | 3.5e-198 | 700.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene92445 | MS.gene023667 | PPI |
MS.gene92445 | MS.gene74542 | PPI |
MS.gene02100 | MS.gene92445 | PPI |
MS.gene92445 | MS.gene03069 | PPI |
MS.gene27907 | MS.gene92445 | PPI |
MS.gene92445 | MS.gene47863 | PPI |
MS.gene92445 | MS.gene003302 | PPI |
MS.gene92445 | MS.gene058821 | PPI |
MS.gene92445 | MS.gene058831 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92445.t1 | MTR_8g038400 | 95.368 | 367 | 16 | 1 | 1 | 366 | 1 | 367 | 0.0 | 705 |
MS.gene92445.t1 | MTR_3g017500 | 72.802 | 364 | 97 | 2 | 4 | 366 | 8 | 370 | 0.0 | 533 |
MS.gene92445.t1 | MTR_3g017500 | 74.366 | 355 | 89 | 2 | 13 | 366 | 47 | 400 | 0.0 | 533 |
MS.gene92445.t1 | MTR_8g088320 | 46.110 | 347 | 151 | 3 | 18 | 364 | 10 | 320 | 1.75e-110 | 326 |
MS.gene92445.t1 | MTR_2g030230 | 44.669 | 347 | 154 | 3 | 18 | 364 | 19 | 327 | 8.69e-105 | 311 |
MS.gene92445.t1 | MTR_3g067585 | 46.203 | 158 | 84 | 1 | 205 | 362 | 1 | 157 | 2.87e-39 | 137 |
MS.gene92445.t1 | MTR_8g107340 | 40.625 | 160 | 94 | 1 | 205 | 364 | 17 | 175 | 8.23e-38 | 134 |
MS.gene92445.t1 | MTR_2g011590 | 43.312 | 157 | 88 | 1 | 206 | 362 | 1 | 156 | 1.33e-37 | 133 |
MS.gene92445.t1 | MTR_1g031650 | 42.581 | 155 | 87 | 2 | 209 | 362 | 6 | 159 | 2.67e-35 | 127 |
MS.gene92445.t1 | MTR_6g069470 | 41.916 | 167 | 95 | 2 | 199 | 364 | 6 | 171 | 2.52e-33 | 122 |
MS.gene92445.t1 | MTR_2g027100 | 42.675 | 157 | 89 | 1 | 205 | 360 | 1 | 157 | 1.01e-32 | 120 |
MS.gene92445.t1 | MTR_4g084280 | 39.241 | 158 | 95 | 1 | 205 | 362 | 1 | 157 | 1.57e-30 | 115 |
MS.gene92445.t1 | MTR_6g080710 | 45.161 | 124 | 63 | 3 | 11 | 130 | 9 | 131 | 3.38e-25 | 103 |
MS.gene92445.t1 | MTR_8g464390 | 43.902 | 123 | 60 | 4 | 11 | 132 | 9 | 123 | 1.78e-24 | 104 |
MS.gene92445.t1 | MTR_2g080950 | 43.902 | 123 | 60 | 3 | 11 | 132 | 9 | 123 | 2.61e-24 | 103 |
MS.gene92445.t1 | MTR_1g031650 | 40.984 | 122 | 71 | 1 | 241 | 362 | 2 | 122 | 3.83e-23 | 94.0 |
MS.gene92445.t1 | MTR_7g020860 | 37.500 | 144 | 65 | 3 | 28 | 147 | 513 | 655 | 9.90e-21 | 94.4 |
MS.gene92445.t1 | MTR_8g100100 | 39.259 | 135 | 57 | 3 | 28 | 138 | 511 | 644 | 1.20e-20 | 94.0 |
MS.gene92445.t1 | MTR_8g100100 | 39.259 | 135 | 57 | 3 | 28 | 138 | 505 | 638 | 1.23e-20 | 94.0 |
MS.gene92445.t1 | MTR_1g069000 | 48.718 | 78 | 39 | 1 | 18 | 95 | 5 | 81 | 5.69e-19 | 88.6 |
MS.gene92445.t1 | MTR_7g020860 | 53.165 | 79 | 34 | 2 | 28 | 104 | 513 | 590 | 5.93e-19 | 89.0 |
MS.gene92445.t1 | MTR_7g099830 | 48.718 | 78 | 39 | 1 | 18 | 95 | 5 | 81 | 1.91e-18 | 86.7 |
MS.gene92445.t1 | MTR_3g098680 | 36.923 | 130 | 57 | 3 | 27 | 132 | 507 | 635 | 1.68e-17 | 84.7 |
MS.gene92445.t1 | MTR_8g067090 | 50.000 | 64 | 31 | 1 | 29 | 92 | 22 | 84 | 2.33e-16 | 80.1 |
MS.gene92445.t1 | MTR_8g471120 | 50.000 | 64 | 31 | 1 | 29 | 92 | 22 | 84 | 2.33e-16 | 80.1 |
MS.gene92445.t1 | MTR_4g074170 | 36.434 | 129 | 58 | 4 | 20 | 125 | 481 | 608 | 4.52e-16 | 80.1 |
MS.gene92445.t1 | MTR_8g067080 | 45.714 | 70 | 37 | 1 | 23 | 92 | 16 | 84 | 2.09e-15 | 77.4 |
MS.gene92445.t1 | MTR_8g067080 | 45.714 | 70 | 37 | 1 | 23 | 92 | 16 | 84 | 2.32e-15 | 77.4 |
MS.gene92445.t1 | MTR_8g471110 | 45.714 | 70 | 37 | 1 | 23 | 92 | 16 | 84 | 2.32e-15 | 77.4 |
MS.gene92445.t1 | MTR_1g008950 | 36.264 | 91 | 56 | 2 | 210 | 298 | 4 | 94 | 1.20e-11 | 62.0 |
MS.gene92445.t1 | MTR_8g464390 | 43.750 | 80 | 37 | 3 | 53 | 132 | 1 | 72 | 1.59e-11 | 65.5 |
MS.gene92445.t1 | MTR_2g080950 | 43.750 | 80 | 37 | 2 | 53 | 132 | 1 | 72 | 2.97e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92445.t1 | AT3G07940 | 65.156 | 353 | 112 | 3 | 14 | 366 | 44 | 385 | 5.65e-167 | 471 |
MS.gene92445.t1 | AT4G21160 | 45.559 | 349 | 163 | 4 | 18 | 366 | 16 | 337 | 6.42e-111 | 327 |
MS.gene92445.t1 | AT4G21160 | 45.559 | 349 | 163 | 4 | 18 | 366 | 16 | 337 | 6.42e-111 | 327 |
MS.gene92445.t1 | AT4G21160 | 45.559 | 349 | 163 | 4 | 18 | 366 | 16 | 337 | 6.42e-111 | 327 |
MS.gene92445.t1 | AT4G21160 | 45.559 | 349 | 163 | 4 | 18 | 366 | 16 | 337 | 6.42e-111 | 327 |
MS.gene92445.t1 | AT4G05330 | 45.845 | 349 | 161 | 4 | 18 | 366 | 16 | 336 | 1.77e-109 | 323 |
MS.gene92445.t1 | AT4G05330 | 45.845 | 349 | 161 | 4 | 18 | 366 | 16 | 336 | 1.77e-109 | 323 |
MS.gene92445.t1 | AT4G05330 | 45.511 | 323 | 148 | 4 | 44 | 366 | 7 | 301 | 2.49e-96 | 289 |
MS.gene92445.t1 | AT3G07940 | 58.744 | 223 | 81 | 3 | 19 | 241 | 49 | 260 | 2.38e-89 | 270 |
MS.gene92445.t1 | AT1G70790 | 44.444 | 153 | 84 | 1 | 209 | 360 | 6 | 158 | 6.16e-38 | 135 |
MS.gene92445.t1 | AT1G70790 | 44.444 | 153 | 84 | 1 | 209 | 360 | 6 | 158 | 6.16e-38 | 135 |
MS.gene92445.t1 | AT1G70790 | 44.444 | 153 | 84 | 1 | 209 | 360 | 6 | 158 | 6.16e-38 | 135 |
MS.gene92445.t1 | AT1G70800 | 41.916 | 167 | 90 | 2 | 197 | 360 | 2 | 164 | 9.90e-38 | 134 |
MS.gene92445.t1 | AT1G73580 | 41.875 | 160 | 92 | 1 | 205 | 364 | 4 | 162 | 5.12e-37 | 132 |
MS.gene92445.t1 | AT1G66360 | 43.125 | 160 | 88 | 2 | 205 | 362 | 1 | 159 | 1.16e-35 | 128 |
MS.gene92445.t1 | AT1G70810 | 40.506 | 158 | 93 | 1 | 205 | 362 | 1 | 157 | 6.22e-35 | 126 |
MS.gene92445.t1 | AT5G37740 | 40.994 | 161 | 91 | 2 | 205 | 362 | 1 | 160 | 1.44e-32 | 120 |
MS.gene92445.t1 | AT2G01540 | 40.523 | 153 | 90 | 1 | 209 | 360 | 6 | 158 | 1.65e-32 | 120 |
MS.gene92445.t1 | AT3G17980 | 35.882 | 170 | 106 | 2 | 195 | 364 | 5 | 171 | 2.91e-32 | 119 |
MS.gene92445.t1 | AT5G47710 | 39.623 | 159 | 95 | 1 | 205 | 362 | 1 | 159 | 5.15e-32 | 118 |
MS.gene92445.t1 | AT5G47710 | 39.623 | 159 | 95 | 1 | 205 | 362 | 1 | 159 | 5.15e-32 | 118 |
MS.gene92445.t1 | AT5G47710 | 39.623 | 159 | 95 | 1 | 205 | 362 | 1 | 159 | 5.15e-32 | 118 |
MS.gene92445.t1 | AT5G47710 | 39.623 | 159 | 95 | 1 | 205 | 362 | 1 | 159 | 5.15e-32 | 118 |
MS.gene92445.t1 | AT1G48590 | 39.429 | 175 | 99 | 4 | 192 | 364 | 26 | 195 | 8.08e-32 | 119 |
MS.gene92445.t1 | AT1G48590 | 40.123 | 162 | 92 | 3 | 205 | 364 | 6 | 164 | 1.31e-31 | 117 |
MS.gene92445.t1 | AT1G48590 | 40.123 | 162 | 92 | 3 | 205 | 364 | 6 | 164 | 1.31e-31 | 117 |
MS.gene92445.t1 | AT1G23140 | 37.342 | 158 | 98 | 1 | 205 | 362 | 1 | 157 | 3.53e-30 | 114 |
MS.gene92445.t1 | AT5G37740 | 38.372 | 172 | 90 | 4 | 205 | 362 | 1 | 170 | 1.21e-29 | 112 |
MS.gene92445.t1 | AT5G54310 | 42.857 | 140 | 71 | 4 | 11 | 149 | 9 | 140 | 1.96e-26 | 110 |
MS.gene92445.t1 | AT3G17660 | 41.463 | 123 | 63 | 3 | 11 | 132 | 9 | 123 | 1.80e-24 | 99.4 |
MS.gene92445.t1 | AT3G17660 | 41.463 | 123 | 63 | 3 | 11 | 132 | 9 | 123 | 3.70e-24 | 99.8 |
MS.gene92445.t1 | AT3G17660 | 41.463 | 123 | 63 | 3 | 11 | 132 | 9 | 123 | 7.86e-24 | 99.0 |
MS.gene92445.t1 | AT1G70790 | 42.857 | 119 | 67 | 1 | 243 | 360 | 3 | 121 | 1.08e-23 | 95.9 |
MS.gene92445.t1 | AT5G13300 | 38.312 | 154 | 72 | 4 | 3 | 135 | 488 | 639 | 1.71e-19 | 90.5 |
MS.gene92445.t1 | AT1G10870 | 27.304 | 293 | 172 | 9 | 28 | 281 | 478 | 768 | 2.96e-19 | 89.7 |
MS.gene92445.t1 | AT5G61980 | 49.462 | 93 | 44 | 2 | 12 | 102 | 493 | 584 | 3.47e-19 | 89.7 |
MS.gene92445.t1 | AT1G10870 | 26.846 | 298 | 172 | 9 | 28 | 281 | 478 | 773 | 1.17e-18 | 88.2 |
MS.gene92445.t1 | AT3G53710 | 46.835 | 79 | 41 | 1 | 18 | 96 | 5 | 82 | 1.67e-17 | 84.0 |
MS.gene92445.t1 | AT3G53710 | 46.835 | 79 | 41 | 1 | 18 | 96 | 5 | 82 | 1.67e-17 | 84.0 |
MS.gene92445.t1 | AT3G53710 | 46.835 | 79 | 41 | 1 | 18 | 96 | 5 | 82 | 1.67e-17 | 84.0 |
MS.gene92445.t1 | AT2G37550 | 46.154 | 78 | 41 | 1 | 18 | 95 | 5 | 81 | 2.96e-17 | 83.2 |
MS.gene92445.t1 | AT2G37550 | 46.154 | 78 | 41 | 1 | 18 | 95 | 5 | 81 | 2.96e-17 | 83.2 |
MS.gene92445.t1 | AT3G17660 | 36.585 | 123 | 59 | 3 | 11 | 132 | 9 | 113 | 3.39e-17 | 80.1 |
MS.gene92445.t1 | AT1G48590 | 29.480 | 173 | 87 | 3 | 192 | 364 | 26 | 163 | 6.96e-17 | 77.8 |
MS.gene92445.t1 | AT1G60860 | 38.462 | 117 | 55 | 3 | 28 | 128 | 307 | 422 | 1.29e-16 | 81.6 |
MS.gene92445.t1 | AT1G60860 | 38.462 | 117 | 55 | 3 | 28 | 128 | 367 | 482 | 1.53e-16 | 81.6 |
MS.gene92445.t1 | AT1G60860 | 38.462 | 117 | 55 | 3 | 28 | 128 | 478 | 593 | 1.55e-16 | 81.6 |
MS.gene92445.t1 | AT2G35210 | 47.826 | 69 | 35 | 1 | 23 | 91 | 16 | 83 | 8.49e-16 | 78.2 |
MS.gene92445.t1 | AT2G35210 | 47.826 | 69 | 35 | 1 | 23 | 91 | 16 | 83 | 1.70e-15 | 77.8 |
MS.gene92445.t1 | AT5G46750 | 47.826 | 69 | 35 | 1 | 23 | 91 | 16 | 83 | 1.83e-15 | 77.4 |
MS.gene92445.t1 | AT4G17890 | 46.377 | 69 | 36 | 1 | 23 | 91 | 19 | 86 | 7.27e-15 | 75.5 |
MS.gene92445.t1 | AT4G17890 | 46.377 | 69 | 36 | 1 | 23 | 91 | 19 | 86 | 9.12e-15 | 75.5 |
Find 66 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACCGAACTTACCACTTTA+AGG | 0.124157 | 8.4:+59744138 | None:intergenic |
CCCTTATGTCATCCTTTCTT+TGG | 0.175750 | 8.4:-59744351 | MS.gene92445:CDS |
ACCAACACTTACACCCATTT+TGG | 0.208803 | 8.4:+59746016 | None:intergenic |
TATCCAAGCTATTGAATTAG+AGG | 0.240207 | 8.4:+59743449 | None:intergenic |
TCAATTGAGGTATGTGGTTT+TGG | 0.244703 | 8.4:+59745024 | None:intergenic |
TGAATTTGTTGGATTGATTA+AGG | 0.287189 | 8.4:-59744426 | MS.gene92445:CDS |
GCGGAACTCCAGAGCCAAAA+TGG | 0.294574 | 8.4:-59746030 | MS.gene92445:CDS |
CCTTATGTCATCCTTTCTTT+GGG | 0.326292 | 8.4:-59744350 | MS.gene92445:CDS |
TTTATTTGCATCAAGTGTTC+TGG | 0.328020 | 8.4:-59745828 | MS.gene92445:CDS |
GGAATAATTTGAATCCAGTT+TGG | 0.333280 | 8.4:-59744202 | MS.gene92445:CDS |
TCTGGCATACATAGAAGTTT+AGG | 0.375842 | 8.4:-59745810 | MS.gene92445:CDS |
GCAGGTATGGTTGAATTTGT+TGG | 0.378256 | 8.4:-59744437 | MS.gene92445:CDS |
TGATGCATCAAGCTGGAAAC+AGG | 0.392763 | 8.4:-59746066 | MS.gene92445:CDS |
AAAATCAGATCTTCAAGTCT+TGG | 0.398805 | 8.4:-59745855 | MS.gene92445:intron |
AAGAGCGCTCTGAATATATC+AGG | 0.411157 | 8.4:-59745002 | MS.gene92445:intron |
AGTTGATGCATTAGAGAAGT+TGG | 0.412436 | 8.4:-59745106 | MS.gene92445:CDS |
AACCGAACTTACCACTTTAA+GGG | 0.415970 | 8.4:+59744139 | None:intergenic |
TTAAGGGGAGGAATGTTCTC+TGG | 0.431886 | 8.4:+59744155 | None:intergenic |
CAAGGAAGAAGTGTATCATT+AGG | 0.434906 | 8.4:-59744821 | MS.gene92445:CDS |
CCTGGTAGGAAAGATGTATC+AGG | 0.437093 | 8.4:-59746519 | MS.gene92445:intron |
ATTAGACTTTCATTCCAAAC+TGG | 0.450148 | 8.4:+59744188 | None:intergenic |
CTTCCTTGAGATGGTACAAA+TGG | 0.455222 | 8.4:+59744836 | None:intergenic |
CGCTCTTCAATTGAGGTATG+TGG | 0.465006 | 8.4:+59745018 | None:intergenic |
TGGCTCTGGAGTTCCGCAAT+CGG | 0.472934 | 8.4:+59746036 | None:intergenic |
CCCAAAGAAAGGATGACATA+AGG | 0.480442 | 8.4:+59744350 | None:intergenic |
TTTACTGTTATAGGCAGGTA+TGG | 0.481028 | 8.4:-59744450 | MS.gene92445:intron |
TTCAGAGCGCTCTTCAATTG+AGG | 0.487339 | 8.4:+59745011 | None:intergenic |
CGAGGAACTGCAGTTTATGA+TGG | 0.487985 | 8.4:-59744882 | MS.gene92445:CDS |
CTCTAGATGCATGGACTCGT+TGG | 0.492503 | 8.4:+59743610 | None:intergenic |
TCAAATTTGATGCATCAAGC+TGG | 0.501569 | 8.4:-59746073 | MS.gene92445:CDS |
TTCAAAGAAGAGTACCTCAT+TGG | 0.502303 | 8.4:-59744675 | MS.gene92445:intron |
TCACTTGGTGTCCCAAAGAA+AGG | 0.502315 | 8.4:+59744339 | None:intergenic |
GTTGATGCATTAGAGAAGTT+GGG | 0.502430 | 8.4:-59745105 | MS.gene92445:CDS |
CCAAAGAAAGGATGACATAA+GGG | 0.504098 | 8.4:+59744351 | None:intergenic |
AATTATTAGGTACACACAAA+AGG | 0.506680 | 8.4:-59746099 | MS.gene92445:intron |
TGTGCAGCTAGTATATGATA+AGG | 0.514462 | 8.4:-59743723 | MS.gene92445:intron |
CGGAACTCCAGAGCCAAAAT+GGG | 0.516197 | 8.4:-59746029 | MS.gene92445:CDS |
ATTAAGGTTAAAGTTATGAA+AGG | 0.516242 | 8.4:-59744410 | MS.gene92445:CDS |
TACAAATTTCTCTAGATGCA+TGG | 0.539159 | 8.4:+59743601 | None:intergenic |
CATCATTGAAGCTAGATCAA+TGG | 0.540544 | 8.4:-59745140 | MS.gene92445:CDS |
GAACATTCCTCCCCTTAAAG+TGG | 0.545423 | 8.4:-59744150 | MS.gene92445:intron |
AAGGATGACATAAGGGTCAC+TGG | 0.548413 | 8.4:+59744358 | None:intergenic |
TCCTCAAGGCATGAAAGTCC+TGG | 0.549985 | 8.4:-59746537 | MS.gene92445:CDS |
AGTAACATACCTTTGATATG+TGG | 0.551071 | 8.4:+59745784 | None:intergenic |
CCTGATACATCTTTCCTACC+AGG | 0.552594 | 8.4:+59746519 | None:intergenic |
AGAGAAATTTGTAGCAAGCA+AGG | 0.560939 | 8.4:-59743591 | MS.gene92445:CDS |
TCACTACATCTCTAATTGCT+AGG | 0.565921 | 8.4:+59744381 | None:intergenic |
GCGCTGACAAGACATCATAT+CGG | 0.569887 | 8.4:-59744746 | MS.gene92445:CDS |
ACCGAACTTACCACTTTAAG+GGG | 0.573276 | 8.4:+59744140 | None:intergenic |
TGTCCATTTGTACCATCTCA+AGG | 0.588611 | 8.4:-59744839 | MS.gene92445:CDS |
GATACACTTCTTCCTTGAGA+TGG | 0.597028 | 8.4:+59744827 | None:intergenic |
TAAATGAAACATTACCAATG+AGG | 0.599438 | 8.4:+59744661 | None:intergenic |
GACATGCATTCCGAAAGAGC+TGG | 0.610586 | 8.4:-59744724 | MS.gene92445:CDS |
AAAGGCTAGAAATGTCCTCA+AGG | 0.614230 | 8.4:-59746551 | None:intergenic |
GTGTCATATCTCTTGATGAT+GGG | 0.614583 | 8.4:-59743547 | MS.gene92445:CDS |
TTTAGGAGTCCACATATCAA+AGG | 0.615847 | 8.4:-59745793 | MS.gene92445:intron |
GGTGTCATATCTCTTGATGA+TGG | 0.616255 | 8.4:-59743548 | MS.gene92445:CDS |
GACAACAGTCTTGTTAGAGA+TGG | 0.617464 | 8.4:-59743569 | MS.gene92445:CDS |
ACCAGGACTTTCATGCCTTG+AGG | 0.618520 | 8.4:+59746536 | None:intergenic |
AATTGCATACGAGAAATCTA+CGG | 0.625889 | 8.4:-59743633 | MS.gene92445:CDS |
GCAATTGCAGCTAAAACTAG+TGG | 0.635267 | 8.4:+59743650 | None:intergenic |
GAACTTACCACTTTAAGGGG+AGG | 0.637663 | 8.4:+59744143 | None:intergenic |
CAAGGCATGAAAGTCCTGGT+AGG | 0.641398 | 8.4:-59746533 | MS.gene92445:CDS |
GATGCATTAGAGAAGTTGGG+TGG | 0.652196 | 8.4:-59745102 | MS.gene92445:CDS |
AGACTACAGAATGTTGAGAG+AGG | 0.662594 | 8.4:-59743500 | MS.gene92445:CDS |
TAAGTGTAACATGAACTACT+CGG | 0.721246 | 8.4:+59744797 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAATATATAAAGACT+TGG | + | chr8.4:59745975-59745994 | None:intergenic | 10.0% |
!! | TTAATTAAATTTATTGTGTT+TGG | - | chr8.4:59746246-59746265 | MS.gene92445:intron | 10.0% |
!! | AAAAGTAAAAACTTATATCT+TGG | - | chr8.4:59743824-59743843 | MS.gene92445:intron | 15.0% |
!! | ATAAAAGAATATATTCCATT+AGG | + | chr8.4:59745460-59745479 | None:intergenic | 15.0% |
!! | ATTAATCATTCTATTATTCT+GGG | + | chr8.4:59743529-59743548 | None:intergenic | 15.0% |
!! | GTACCTAATAATTTATAAAA+AGG | + | chr8.4:59743891-59743910 | None:intergenic | 15.0% |
!! | TATAATGAAAAATTTAGTAG+AGG | - | chr8.4:59743659-59743678 | MS.gene92445:CDS | 15.0% |
!!! | AAATTCTTAACATCTTTTTA+GGG | - | chr8.4:59744518-59744537 | MS.gene92445:intron | 15.0% |
!!! | AAGCCTTTTTATAAATTATT+AGG | - | chr8.4:59743885-59743904 | MS.gene92445:intron | 15.0% |
!!! | TCTTATTTAAACTTTTTTAC+TGG | - | chr8.4:59744553-59744572 | MS.gene92445:intron | 15.0% |
!!! | TTTGGTTTTTTTATATTACT+TGG | + | chr8.4:59744958-59744977 | None:intergenic | 15.0% |
!! | AATTTATAAAAAGGCTTATG+TGG | + | chr8.4:59743882-59743901 | None:intergenic | 20.0% |
!! | ATCCAAAATAGAAATCAAAA+TGG | - | chr8.4:59745919-59745938 | MS.gene92445:intron | 20.0% |
!! | ATGAACTAATAATGATATAG+AGG | + | chr8.4:59744083-59744102 | None:intergenic | 20.0% |
!! | ATTAAGGTTAAAGTTATGAA+AGG | - | chr8.4:59745587-59745606 | MS.gene92445:intron | 20.0% |
!! | CAATGTCATAAATTAAACTT+TGG | - | chr8.4:59744457-59744476 | MS.gene92445:intron | 20.0% |
!! | GAAAAATATGAATAAAGTAG+AGG | - | chr8.4:59745704-59745723 | MS.gene92445:intron | 20.0% |
!! | GATTAATCATTCTATTATTC+TGG | + | chr8.4:59743530-59743549 | None:intergenic | 20.0% |
!! | TAATTTATTATCCTCTTGAA+AGG | - | chr8.4:59743848-59743867 | MS.gene92445:intron | 20.0% |
!! | TGTGTAATTCATATTATAGA+AGG | - | chr8.4:59746081-59746100 | MS.gene92445:CDS | 20.0% |
!! | TTAATCATTCTATTATTCTG+GGG | + | chr8.4:59743528-59743547 | None:intergenic | 20.0% |
!! | TTGTTACTATTTACTGTTAT+AGG | - | chr8.4:59745538-59745557 | MS.gene92445:intron | 20.0% |
!!! | AGTATTTTTTTCACAAAAAC+AGG | + | chr8.4:59743617-59743636 | None:intergenic | 20.0% |
!!! | ATTGCTTGATACATTTTAAA+AGG | - | chr8.4:59746214-59746233 | MS.gene92445:intron | 20.0% |
!!! | ATTTTCAACTGATGATTTTA+TGG | - | chr8.4:59746301-59746320 | MS.gene92445:intron | 20.0% |
!!! | CAAATTCTTAACATCTTTTT+AGG | - | chr8.4:59744517-59744536 | MS.gene92445:intron | 20.0% |
!!! | TTTTCAACTGATGATTTTAT+GGG | - | chr8.4:59746302-59746321 | MS.gene92445:intron | 20.0% |
!!! | TTTTTTCCTGAAAAATCATT+AGG | + | chr8.4:59745093-59745112 | None:intergenic | 20.0% |
! | AATTATTAGGTACACACAAA+AGG | - | chr8.4:59743898-59743917 | MS.gene92445:intron | 25.0% |
! | ACTAATAATGATATAGAGGT+TGG | + | chr8.4:59744079-59744098 | None:intergenic | 25.0% |
! | AGGACATTTCTTAATAACAA+TGG | + | chr8.4:59745073-59745092 | None:intergenic | 25.0% |
! | CAATCAACAATAGAGATAAA+TGG | + | chr8.4:59746198-59746217 | None:intergenic | 25.0% |
! | TAAAGTAGAGGAAATGAAAA+AGG | - | chr8.4:59745716-59745735 | MS.gene92445:intron | 25.0% |
! | TAAATGAAACATTACCAATG+AGG | + | chr8.4:59745339-59745358 | None:intergenic | 25.0% |
! | TAATCATTCTATTATTCTGG+GGG | + | chr8.4:59743527-59743546 | None:intergenic | 25.0% |
! | TCATTGACAGTAATTTAAGA+TGG | + | chr8.4:59744429-59744448 | None:intergenic | 25.0% |
! | TTAATATTTGTTCTTGCAGT+CGG | - | chr8.4:59745754-59745773 | MS.gene92445:intron | 25.0% |
!! | AAATGTCCTAATGATTTTTC+AGG | - | chr8.4:59745084-59745103 | MS.gene92445:CDS | 25.0% |
!! | TTCTATTTGTATGTTTTGTG+CGG | - | chr8.4:59745037-59745056 | MS.gene92445:CDS | 25.0% |
!! | TTGCATCAATTGATTCAAAA+AGG | + | chr8.4:59745409-59745428 | None:intergenic | 25.0% |
!!! | ATTTTTCAGGAAAAAATACG+AGG | - | chr8.4:59745097-59745116 | MS.gene92445:CDS | 25.0% |
!!! | TGAATTTGTTGGATTGATTA+AGG | - | chr8.4:59745571-59745590 | MS.gene92445:intron | 25.0% |
!!! | TGCCATTTTGATTTCTATTT+TGG | + | chr8.4:59745924-59745943 | None:intergenic | 25.0% |
!!! | TTAAGTACTGATTTTGATCA+AGG | + | chr8.4:59744795-59744814 | None:intergenic | 25.0% |
AAAATCAGATCTTCAAGTCT+TGG | - | chr8.4:59744142-59744161 | MS.gene92445:intron | 30.0% | |
AAAATGATCTCCGAATCTAA+TGG | - | chr8.4:59743781-59743800 | MS.gene92445:intron | 30.0% | |
AAGAGATAAGAATACTCACT+TGG | + | chr8.4:59745676-59745695 | None:intergenic | 30.0% | |
AAGTTCGATTCAACGAAAAT+CGG | + | chr8.4:59744007-59744026 | None:intergenic | 30.0% | |
AATCATTCTATTATTCTGGG+GGG | + | chr8.4:59743526-59743545 | None:intergenic | 30.0% | |
AATTGCATACGAGAAATCTA+CGG | - | chr8.4:59746364-59746383 | MS.gene92445:intron | 30.0% | |
AGTAACATACCTTTGATATG+TGG | + | chr8.4:59744216-59744235 | None:intergenic | 30.0% | |
ATCTGTAATAGTCAAACATG+TGG | + | chr8.4:59744835-59744854 | None:intergenic | 30.0% | |
ATTAGACTTTCATTCCAAAC+TGG | + | chr8.4:59745812-59745831 | None:intergenic | 30.0% | |
GGAATAATTTGAATCCAGTT+TGG | - | chr8.4:59745795-59745814 | MS.gene92445:CDS | 30.0% | |
TAAGTGTAACATGAACTACT+CGG | + | chr8.4:59745203-59745222 | None:intergenic | 30.0% | |
TACAAATTTCTCTAGATGCA+TGG | + | chr8.4:59746399-59746418 | None:intergenic | 30.0% | |
TACTATTTACTGTTATAGGC+AGG | - | chr8.4:59745542-59745561 | MS.gene92445:intron | 30.0% | |
TAGTATTATGCATGACCTAA+TGG | - | chr8.4:59745442-59745461 | MS.gene92445:intron | 30.0% | |
TTTATTTGCATCAAGTGTTC+TGG | - | chr8.4:59744169-59744188 | MS.gene92445:CDS | 30.0% | |
! | AAGAGAAAATGAAAGAGCAT+TGG | + | chr8.4:59746053-59746072 | None:intergenic | 30.0% |
! | TTTTCACAAAAACAGGTGAA+AGG | + | chr8.4:59743610-59743629 | None:intergenic | 30.0% |
!! | AAAATGGCATACTTTTTGCA+TGG | - | chr8.4:59745935-59745954 | MS.gene92445:intron | 30.0% |
!! | CTTATTTTCATAAGTCCTCT+AGG | - | chr8.4:59744611-59744630 | MS.gene92445:intron | 30.0% |
!! | TTCTATTTTGGATCTCAACA+CGG | + | chr8.4:59745912-59745931 | None:intergenic | 30.0% |
!!! | ACATCTTTTTAGGGTTTGTT+TGG | - | chr8.4:59744527-59744546 | MS.gene92445:intron | 30.0% |
!!! | ATTTTGATCAAGGTACTGTT+TGG | + | chr8.4:59744785-59744804 | None:intergenic | 30.0% |
!!! | ATTTTTTTCTCCGGATCTAA+AGG | + | chr8.4:59743766-59743785 | None:intergenic | 30.0% |
!!! | TTCGGTTGTTTTTCAGTTTA+TGG | - | chr8.4:59745874-59745893 | MS.gene92445:intron | 30.0% |
!!! | TTTTACTTTTTAGAGCAGCA+CGG | + | chr8.4:59743814-59743833 | None:intergenic | 30.0% |
AACCGAACTTACCACTTTAA+GGG | + | chr8.4:59745861-59745880 | None:intergenic | 35.0% | |
ACCAATATCTCATGTGATGT+CGG | + | chr8.4:59744315-59744334 | None:intergenic | 35.0% | |
AGAGAAATTTGTAGCAAGCA+AGG | - | chr8.4:59746406-59746425 | MS.gene92445:intron | 35.0% | |
CAAAAACAGGTGAAAGGAAA+AGG | + | chr8.4:59743604-59743623 | None:intergenic | 35.0% | |
CATCATTGAAGCTAGATCAA+TGG | - | chr8.4:59744857-59744876 | MS.gene92445:CDS | 35.0% | |
CCAAAGAAAGGATGACATAA+GGG | + | chr8.4:59745649-59745668 | None:intergenic | 35.0% | |
CCTTATGTCATCCTTTCTTT+GGG | - | chr8.4:59745647-59745666 | MS.gene92445:intron | 35.0% | |
GCATTGGACATGAAAAAGAA+GGG | + | chr8.4:59746008-59746027 | None:intergenic | 35.0% | |
GGAAAAACAATCCAAAGCAA+AGG | + | chr8.4:59746032-59746051 | None:intergenic | 35.0% | |
GTGATGTACAATGTAGTGTA+TGG | - | chr8.4:59743709-59743728 | MS.gene92445:CDS | 35.0% | |
GTTGATGCATTAGAGAAGTT+GGG | - | chr8.4:59744892-59744911 | MS.gene92445:CDS | 35.0% | |
TCAAAGGAATTCCATGTAGA+AGG | - | chr8.4:59744394-59744413 | MS.gene92445:CDS | 35.0% | |
TCAAATTTGATGCATCAAGC+TGG | - | chr8.4:59743924-59743943 | MS.gene92445:intron | 35.0% | |
TCACTACATCTCTAATTGCT+AGG | + | chr8.4:59745619-59745638 | None:intergenic | 35.0% | |
TCTGGCATACATAGAAGTTT+AGG | - | chr8.4:59744187-59744206 | MS.gene92445:CDS | 35.0% | |
TGGTTAAGTTTCCTTTCAAG+AGG | + | chr8.4:59743862-59743881 | None:intergenic | 35.0% | |
TGTGCAGCTAGTATATGATA+AGG | - | chr8.4:59746274-59746293 | MS.gene92445:intron | 35.0% | |
TTCAGATCTCTAGTACTCAA+AGG | - | chr8.4:59744378-59744397 | MS.gene92445:CDS | 35.0% | |
TTTACTGTTATAGGCAGGTA+TGG | - | chr8.4:59745547-59745566 | MS.gene92445:intron | 35.0% | |
TTTAGGAGTCCACATATCAA+AGG | - | chr8.4:59744204-59744223 | MS.gene92445:CDS | 35.0% | |
! | AGCATTGGACATGAAAAAGA+AGG | + | chr8.4:59746009-59746028 | None:intergenic | 35.0% |
! | AGTTGATGCATTAGAGAAGT+TGG | - | chr8.4:59744891-59744910 | MS.gene92445:CDS | 35.0% |
! | CAAGGAAGAAGTGTATCATT+AGG | - | chr8.4:59745176-59745195 | MS.gene92445:intron | 35.0% |
! | GTGTCATATCTCTTGATGAT+GGG | - | chr8.4:59746450-59746469 | MS.gene92445:intron | 35.0% |
! | TATTTGTATGTTTTGTGCGG+AGG | - | chr8.4:59745040-59745059 | MS.gene92445:CDS | 35.0% |
! | TCAATTGAGGTATGTGGTTT+TGG | + | chr8.4:59744976-59744995 | None:intergenic | 35.0% |
! | TTCGTTGAATCGAACTTGTT+AGG | - | chr8.4:59744010-59744029 | MS.gene92445:intron | 35.0% |
!! | TTCAAAGAAGAGTACCTCAT+TGG | - | chr8.4:59745322-59745341 | MS.gene92445:intron | 35.0% |
!!! | TCGGAGATCATTTTTTTCTC+CGG | + | chr8.4:59743775-59743794 | None:intergenic | 35.0% |
ACCGAACTTACCACTTTAAG+GGG | + | chr8.4:59745860-59745879 | None:intergenic | 40.0% | |
AGACTACAGAATGTTGAGAG+AGG | - | chr8.4:59746497-59746516 | MS.gene92445:intron | 40.0% | |
CAACCGAACTTACCACTTTA+AGG | + | chr8.4:59745862-59745881 | None:intergenic | 40.0% | |
CCCAAAGAAAGGATGACATA+AGG | + | chr8.4:59745650-59745669 | None:intergenic | 40.0% | |
CCCTTATGTCATCCTTTCTT+TGG | - | chr8.4:59745646-59745665 | MS.gene92445:intron | 40.0% | |
CGGTAAAAACACGCGTTATA+AGG | - | chr8.4:59745774-59745793 | MS.gene92445:intron | 40.0% | |
CTTCCTTGAGATGGTACAAA+TGG | + | chr8.4:59745164-59745183 | None:intergenic | 40.0% | |
GATACACTTCTTCCTTGAGA+TGG | + | chr8.4:59745173-59745192 | None:intergenic | 40.0% | |
GCAATTGCAGCTAAAACTAG+TGG | + | chr8.4:59746350-59746369 | None:intergenic | 40.0% | |
GCAGGTATGGTTGAATTTGT+TGG | - | chr8.4:59745560-59745579 | MS.gene92445:intron | 40.0% | |
GTTACCTAGTTGAGCAAGTT+TGG | + | chr8.4:59743686-59743705 | None:intergenic | 40.0% | |
TCCCCTTAAAGTGGTAAGTT+CGG | - | chr8.4:59745856-59745875 | MS.gene92445:intron | 40.0% | |
TCCGACATCACATGAGATAT+TGG | - | chr8.4:59744311-59744330 | MS.gene92445:intron | 40.0% | |
TGCTGTAAAGCCTTTAGATC+CGG | - | chr8.4:59743753-59743772 | MS.gene92445:intron | 40.0% | |
TGTCCATTTGTACCATCTCA+AGG | - | chr8.4:59745158-59745177 | MS.gene92445:intron | 40.0% | |
! | AATCCAAAGCAAAGGAGCAT+TGG | + | chr8.4:59746024-59746043 | None:intergenic | 40.0% |
! | ACCAACACTTACACCCATTT+TGG | + | chr8.4:59743984-59744003 | None:intergenic | 40.0% |
! | CTTTTCTTGTCCAGCTCTTT+CGG | + | chr8.4:59745286-59745305 | None:intergenic | 40.0% |
! | GGTGTCATATCTCTTGATGA+TGG | - | chr8.4:59746449-59746468 | MS.gene92445:intron | 40.0% |
! | GTTTTCGTCAGATATCCTAG+AGG | + | chr8.4:59744629-59744648 | None:intergenic | 40.0% |
!! | AAGAGCGCTCTGAATATATC+AGG | - | chr8.4:59744995-59745014 | MS.gene92445:intron | 40.0% |
!! | GACAACAGTCTTGTTAGAGA+TGG | - | chr8.4:59746428-59746447 | MS.gene92445:intron | 40.0% |
AAGGATGACATAAGGGTCAC+TGG | + | chr8.4:59745642-59745661 | None:intergenic | 45.0% | |
AGACAGTCTCACAAGTCACA+AGG | + | chr8.4:59744586-59744605 | None:intergenic | 45.0% | |
CCTGATACATCTTTCCTACC+AGG | + | chr8.4:59743481-59743500 | None:intergenic | 45.0% | |
CCTGGTAGGAAAGATGTATC+AGG | - | chr8.4:59743478-59743497 | MS.gene92445:CDS | 45.0% | |
CGAGGAACTGCAGTTTATGA+TGG | - | chr8.4:59745115-59745134 | MS.gene92445:CDS | 45.0% | |
CGCTCTTCAATTGAGGTATG+TGG | + | chr8.4:59744982-59745001 | None:intergenic | 45.0% | |
GAACATTCCTCCCCTTAAAG+TGG | - | chr8.4:59745847-59745866 | MS.gene92445:CDS | 45.0% | |
GACAGTCTCACAAGTCACAA+GGG | + | chr8.4:59744585-59744604 | None:intergenic | 45.0% | |
GATGCATTAGAGAAGTTGGG+TGG | - | chr8.4:59744895-59744914 | MS.gene92445:intron | 45.0% | |
GCCAAAATGGGTGTAAGTGT+TGG | - | chr8.4:59743980-59743999 | MS.gene92445:intron | 45.0% | |
GGCATGTATCTCCTTCTACA+TGG | + | chr8.4:59744408-59744427 | None:intergenic | 45.0% | |
TGATGCATCAAGCTGGAAAC+AGG | - | chr8.4:59743931-59743950 | MS.gene92445:intron | 45.0% | |
TGTCCAATGCTCCTTTGCTT+TGG | - | chr8.4:59746018-59746037 | MS.gene92445:intron | 45.0% | |
TTAAGGGGAGGAATGTTCTC+TGG | + | chr8.4:59745845-59745864 | None:intergenic | 45.0% | |
! | AGGACCAAACTTGCTCAACT+AGG | - | chr8.4:59743679-59743698 | MS.gene92445:CDS | 45.0% |
! | GAACTTACCACTTTAAGGGG+AGG | + | chr8.4:59745857-59745876 | None:intergenic | 45.0% |
! | GCGCTGACAAGACATCATAT+CGG | - | chr8.4:59745251-59745270 | MS.gene92445:intron | 45.0% |
! | TTCAGAGCGCTCTTCAATTG+AGG | + | chr8.4:59744989-59745008 | None:intergenic | 45.0% |
!! | TCACTTGGTGTCCCAAAGAA+AGG | + | chr8.4:59745661-59745680 | None:intergenic | 45.0% |
!!! | AACAGGTTTTGTGCCGATTG+CGG | - | chr8.4:59743948-59743967 | MS.gene92445:intron | 45.0% |
!!! | ACTTACACCCATTTTGGCTC+TGG | + | chr8.4:59743978-59743997 | None:intergenic | 45.0% |
ACCAGGACTTTCATGCCTTG+AGG | + | chr8.4:59743464-59743483 | None:intergenic | 50.0% | |
CAAGGCATGAAAGTCCTGGT+AGG | - | chr8.4:59743464-59743483 | MS.gene92445:CDS | 50.0% | |
CGGAACTCCAGAGCCAAAAT+GGG | - | chr8.4:59743968-59743987 | MS.gene92445:intron | 50.0% | |
CGGTGCAGAGCCATTAGATT+CGG | + | chr8.4:59743794-59743813 | None:intergenic | 50.0% | |
CTCTAGATGCATGGACTCGT+TGG | + | chr8.4:59746390-59746409 | None:intergenic | 50.0% | |
GACATGCATTCCGAAAGAGC+TGG | - | chr8.4:59745273-59745292 | MS.gene92445:intron | 50.0% | |
TCCTCAAGGCATGAAAGTCC+TGG | - | chr8.4:59743460-59743479 | MS.gene92445:CDS | 50.0% | |
GCGGAACTCCAGAGCCAAAA+TGG | - | chr8.4:59743967-59743986 | MS.gene92445:intron | 55.0% | |
!! | TGGCTCTGGAGTTCCGCAAT+CGG | + | chr8.4:59743964-59743983 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 59743457 | 59746562 | 59743457 | ID=MS.gene92445 |
chr8.4 | mRNA | 59743457 | 59746562 | 59743457 | ID=MS.gene92445.t1;Parent=MS.gene92445 |
chr8.4 | exon | 59746520 | 59746562 | 59746520 | ID=MS.gene92445.t1.exon1;Parent=MS.gene92445.t1 |
chr8.4 | CDS | 59746520 | 59746562 | 59746520 | ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1 |
chr8.4 | exon | 59746028 | 59746112 | 59746028 | ID=MS.gene92445.t1.exon2;Parent=MS.gene92445.t1 |
chr8.4 | CDS | 59746028 | 59746112 | 59746028 | ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1 |
chr8.4 | exon | 59745794 | 59745869 | 59745794 | ID=MS.gene92445.t1.exon3;Parent=MS.gene92445.t1 |
chr8.4 | CDS | 59745794 | 59745869 | 59745794 | ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1 |
chr8.4 | exon | 59745003 | 59745166 | 59745003 | ID=MS.gene92445.t1.exon4;Parent=MS.gene92445.t1 |
chr8.4 | CDS | 59745003 | 59745166 | 59745003 | ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1 |
chr8.4 | exon | 59744676 | 59744913 | 59744676 | ID=MS.gene92445.t1.exon5;Parent=MS.gene92445.t1 |
chr8.4 | CDS | 59744676 | 59744913 | 59744676 | ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1 |
chr8.4 | exon | 59744343 | 59744459 | 59744343 | ID=MS.gene92445.t1.exon6;Parent=MS.gene92445.t1 |
chr8.4 | CDS | 59744343 | 59744459 | 59744343 | ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1 |
chr8.4 | exon | 59744151 | 59744246 | 59744151 | ID=MS.gene92445.t1.exon7;Parent=MS.gene92445.t1 |
chr8.4 | CDS | 59744151 | 59744246 | 59744151 | ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1 |
chr8.4 | exon | 59743457 | 59743738 | 59743457 | ID=MS.gene92445.t1.exon8;Parent=MS.gene92445.t1 |
chr8.4 | CDS | 59743457 | 59743738 | 59743457 | ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1 |
Gene Sequence |
Protein sequence |