AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92445


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92445.t1 MTR_8g038400 95.368 367 16 1 1 366 1 367 0.0 705
MS.gene92445.t1 MTR_3g017500 72.802 364 97 2 4 366 8 370 0.0 533
MS.gene92445.t1 MTR_3g017500 74.366 355 89 2 13 366 47 400 0.0 533
MS.gene92445.t1 MTR_8g088320 46.110 347 151 3 18 364 10 320 1.75e-110 326
MS.gene92445.t1 MTR_2g030230 44.669 347 154 3 18 364 19 327 8.69e-105 311
MS.gene92445.t1 MTR_3g067585 46.203 158 84 1 205 362 1 157 2.87e-39 137
MS.gene92445.t1 MTR_8g107340 40.625 160 94 1 205 364 17 175 8.23e-38 134
MS.gene92445.t1 MTR_2g011590 43.312 157 88 1 206 362 1 156 1.33e-37 133
MS.gene92445.t1 MTR_1g031650 42.581 155 87 2 209 362 6 159 2.67e-35 127
MS.gene92445.t1 MTR_6g069470 41.916 167 95 2 199 364 6 171 2.52e-33 122
MS.gene92445.t1 MTR_2g027100 42.675 157 89 1 205 360 1 157 1.01e-32 120
MS.gene92445.t1 MTR_4g084280 39.241 158 95 1 205 362 1 157 1.57e-30 115
MS.gene92445.t1 MTR_6g080710 45.161 124 63 3 11 130 9 131 3.38e-25 103
MS.gene92445.t1 MTR_8g464390 43.902 123 60 4 11 132 9 123 1.78e-24 104
MS.gene92445.t1 MTR_2g080950 43.902 123 60 3 11 132 9 123 2.61e-24 103
MS.gene92445.t1 MTR_1g031650 40.984 122 71 1 241 362 2 122 3.83e-23 94.0
MS.gene92445.t1 MTR_7g020860 37.500 144 65 3 28 147 513 655 9.90e-21 94.4
MS.gene92445.t1 MTR_8g100100 39.259 135 57 3 28 138 511 644 1.20e-20 94.0
MS.gene92445.t1 MTR_8g100100 39.259 135 57 3 28 138 505 638 1.23e-20 94.0
MS.gene92445.t1 MTR_1g069000 48.718 78 39 1 18 95 5 81 5.69e-19 88.6
MS.gene92445.t1 MTR_7g020860 53.165 79 34 2 28 104 513 590 5.93e-19 89.0
MS.gene92445.t1 MTR_7g099830 48.718 78 39 1 18 95 5 81 1.91e-18 86.7
MS.gene92445.t1 MTR_3g098680 36.923 130 57 3 27 132 507 635 1.68e-17 84.7
MS.gene92445.t1 MTR_8g067090 50.000 64 31 1 29 92 22 84 2.33e-16 80.1
MS.gene92445.t1 MTR_8g471120 50.000 64 31 1 29 92 22 84 2.33e-16 80.1
MS.gene92445.t1 MTR_4g074170 36.434 129 58 4 20 125 481 608 4.52e-16 80.1
MS.gene92445.t1 MTR_8g067080 45.714 70 37 1 23 92 16 84 2.09e-15 77.4
MS.gene92445.t1 MTR_8g067080 45.714 70 37 1 23 92 16 84 2.32e-15 77.4
MS.gene92445.t1 MTR_8g471110 45.714 70 37 1 23 92 16 84 2.32e-15 77.4
MS.gene92445.t1 MTR_1g008950 36.264 91 56 2 210 298 4 94 1.20e-11 62.0
MS.gene92445.t1 MTR_8g464390 43.750 80 37 3 53 132 1 72 1.59e-11 65.5
MS.gene92445.t1 MTR_2g080950 43.750 80 37 2 53 132 1 72 2.97e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92445.t1 AT3G07940 65.156 353 112 3 14 366 44 385 5.65e-167 471
MS.gene92445.t1 AT4G21160 45.559 349 163 4 18 366 16 337 6.42e-111 327
MS.gene92445.t1 AT4G21160 45.559 349 163 4 18 366 16 337 6.42e-111 327
MS.gene92445.t1 AT4G21160 45.559 349 163 4 18 366 16 337 6.42e-111 327
MS.gene92445.t1 AT4G21160 45.559 349 163 4 18 366 16 337 6.42e-111 327
MS.gene92445.t1 AT4G05330 45.845 349 161 4 18 366 16 336 1.77e-109 323
MS.gene92445.t1 AT4G05330 45.845 349 161 4 18 366 16 336 1.77e-109 323
MS.gene92445.t1 AT4G05330 45.511 323 148 4 44 366 7 301 2.49e-96 289
MS.gene92445.t1 AT3G07940 58.744 223 81 3 19 241 49 260 2.38e-89 270
MS.gene92445.t1 AT1G70790 44.444 153 84 1 209 360 6 158 6.16e-38 135
MS.gene92445.t1 AT1G70790 44.444 153 84 1 209 360 6 158 6.16e-38 135
MS.gene92445.t1 AT1G70790 44.444 153 84 1 209 360 6 158 6.16e-38 135
MS.gene92445.t1 AT1G70800 41.916 167 90 2 197 360 2 164 9.90e-38 134
MS.gene92445.t1 AT1G73580 41.875 160 92 1 205 364 4 162 5.12e-37 132
MS.gene92445.t1 AT1G66360 43.125 160 88 2 205 362 1 159 1.16e-35 128
MS.gene92445.t1 AT1G70810 40.506 158 93 1 205 362 1 157 6.22e-35 126
MS.gene92445.t1 AT5G37740 40.994 161 91 2 205 362 1 160 1.44e-32 120
MS.gene92445.t1 AT2G01540 40.523 153 90 1 209 360 6 158 1.65e-32 120
MS.gene92445.t1 AT3G17980 35.882 170 106 2 195 364 5 171 2.91e-32 119
MS.gene92445.t1 AT5G47710 39.623 159 95 1 205 362 1 159 5.15e-32 118
MS.gene92445.t1 AT5G47710 39.623 159 95 1 205 362 1 159 5.15e-32 118
MS.gene92445.t1 AT5G47710 39.623 159 95 1 205 362 1 159 5.15e-32 118
MS.gene92445.t1 AT5G47710 39.623 159 95 1 205 362 1 159 5.15e-32 118
MS.gene92445.t1 AT1G48590 39.429 175 99 4 192 364 26 195 8.08e-32 119
MS.gene92445.t1 AT1G48590 40.123 162 92 3 205 364 6 164 1.31e-31 117
MS.gene92445.t1 AT1G48590 40.123 162 92 3 205 364 6 164 1.31e-31 117
MS.gene92445.t1 AT1G23140 37.342 158 98 1 205 362 1 157 3.53e-30 114
MS.gene92445.t1 AT5G37740 38.372 172 90 4 205 362 1 170 1.21e-29 112
MS.gene92445.t1 AT5G54310 42.857 140 71 4 11 149 9 140 1.96e-26 110
MS.gene92445.t1 AT3G17660 41.463 123 63 3 11 132 9 123 1.80e-24 99.4
MS.gene92445.t1 AT3G17660 41.463 123 63 3 11 132 9 123 3.70e-24 99.8
MS.gene92445.t1 AT3G17660 41.463 123 63 3 11 132 9 123 7.86e-24 99.0
MS.gene92445.t1 AT1G70790 42.857 119 67 1 243 360 3 121 1.08e-23 95.9
MS.gene92445.t1 AT5G13300 38.312 154 72 4 3 135 488 639 1.71e-19 90.5
MS.gene92445.t1 AT1G10870 27.304 293 172 9 28 281 478 768 2.96e-19 89.7
MS.gene92445.t1 AT5G61980 49.462 93 44 2 12 102 493 584 3.47e-19 89.7
MS.gene92445.t1 AT1G10870 26.846 298 172 9 28 281 478 773 1.17e-18 88.2
MS.gene92445.t1 AT3G53710 46.835 79 41 1 18 96 5 82 1.67e-17 84.0
MS.gene92445.t1 AT3G53710 46.835 79 41 1 18 96 5 82 1.67e-17 84.0
MS.gene92445.t1 AT3G53710 46.835 79 41 1 18 96 5 82 1.67e-17 84.0
MS.gene92445.t1 AT2G37550 46.154 78 41 1 18 95 5 81 2.96e-17 83.2
MS.gene92445.t1 AT2G37550 46.154 78 41 1 18 95 5 81 2.96e-17 83.2
MS.gene92445.t1 AT3G17660 36.585 123 59 3 11 132 9 113 3.39e-17 80.1
MS.gene92445.t1 AT1G48590 29.480 173 87 3 192 364 26 163 6.96e-17 77.8
MS.gene92445.t1 AT1G60860 38.462 117 55 3 28 128 307 422 1.29e-16 81.6
MS.gene92445.t1 AT1G60860 38.462 117 55 3 28 128 367 482 1.53e-16 81.6
MS.gene92445.t1 AT1G60860 38.462 117 55 3 28 128 478 593 1.55e-16 81.6
MS.gene92445.t1 AT2G35210 47.826 69 35 1 23 91 16 83 8.49e-16 78.2
MS.gene92445.t1 AT2G35210 47.826 69 35 1 23 91 16 83 1.70e-15 77.8
MS.gene92445.t1 AT5G46750 47.826 69 35 1 23 91 16 83 1.83e-15 77.4
MS.gene92445.t1 AT4G17890 46.377 69 36 1 23 91 19 86 7.27e-15 75.5
MS.gene92445.t1 AT4G17890 46.377 69 36 1 23 91 19 86 9.12e-15 75.5

Find 66 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCGAACTTACCACTTTA+AGG 0.124157 8.4:+59744138 None:intergenic
CCCTTATGTCATCCTTTCTT+TGG 0.175750 8.4:-59744351 MS.gene92445:CDS
ACCAACACTTACACCCATTT+TGG 0.208803 8.4:+59746016 None:intergenic
TATCCAAGCTATTGAATTAG+AGG 0.240207 8.4:+59743449 None:intergenic
TCAATTGAGGTATGTGGTTT+TGG 0.244703 8.4:+59745024 None:intergenic
TGAATTTGTTGGATTGATTA+AGG 0.287189 8.4:-59744426 MS.gene92445:CDS
GCGGAACTCCAGAGCCAAAA+TGG 0.294574 8.4:-59746030 MS.gene92445:CDS
CCTTATGTCATCCTTTCTTT+GGG 0.326292 8.4:-59744350 MS.gene92445:CDS
TTTATTTGCATCAAGTGTTC+TGG 0.328020 8.4:-59745828 MS.gene92445:CDS
GGAATAATTTGAATCCAGTT+TGG 0.333280 8.4:-59744202 MS.gene92445:CDS
TCTGGCATACATAGAAGTTT+AGG 0.375842 8.4:-59745810 MS.gene92445:CDS
GCAGGTATGGTTGAATTTGT+TGG 0.378256 8.4:-59744437 MS.gene92445:CDS
TGATGCATCAAGCTGGAAAC+AGG 0.392763 8.4:-59746066 MS.gene92445:CDS
AAAATCAGATCTTCAAGTCT+TGG 0.398805 8.4:-59745855 MS.gene92445:intron
AAGAGCGCTCTGAATATATC+AGG 0.411157 8.4:-59745002 MS.gene92445:intron
AGTTGATGCATTAGAGAAGT+TGG 0.412436 8.4:-59745106 MS.gene92445:CDS
AACCGAACTTACCACTTTAA+GGG 0.415970 8.4:+59744139 None:intergenic
TTAAGGGGAGGAATGTTCTC+TGG 0.431886 8.4:+59744155 None:intergenic
CAAGGAAGAAGTGTATCATT+AGG 0.434906 8.4:-59744821 MS.gene92445:CDS
CCTGGTAGGAAAGATGTATC+AGG 0.437093 8.4:-59746519 MS.gene92445:intron
ATTAGACTTTCATTCCAAAC+TGG 0.450148 8.4:+59744188 None:intergenic
CTTCCTTGAGATGGTACAAA+TGG 0.455222 8.4:+59744836 None:intergenic
CGCTCTTCAATTGAGGTATG+TGG 0.465006 8.4:+59745018 None:intergenic
TGGCTCTGGAGTTCCGCAAT+CGG 0.472934 8.4:+59746036 None:intergenic
CCCAAAGAAAGGATGACATA+AGG 0.480442 8.4:+59744350 None:intergenic
TTTACTGTTATAGGCAGGTA+TGG 0.481028 8.4:-59744450 MS.gene92445:intron
TTCAGAGCGCTCTTCAATTG+AGG 0.487339 8.4:+59745011 None:intergenic
CGAGGAACTGCAGTTTATGA+TGG 0.487985 8.4:-59744882 MS.gene92445:CDS
CTCTAGATGCATGGACTCGT+TGG 0.492503 8.4:+59743610 None:intergenic
TCAAATTTGATGCATCAAGC+TGG 0.501569 8.4:-59746073 MS.gene92445:CDS
TTCAAAGAAGAGTACCTCAT+TGG 0.502303 8.4:-59744675 MS.gene92445:intron
TCACTTGGTGTCCCAAAGAA+AGG 0.502315 8.4:+59744339 None:intergenic
GTTGATGCATTAGAGAAGTT+GGG 0.502430 8.4:-59745105 MS.gene92445:CDS
CCAAAGAAAGGATGACATAA+GGG 0.504098 8.4:+59744351 None:intergenic
AATTATTAGGTACACACAAA+AGG 0.506680 8.4:-59746099 MS.gene92445:intron
TGTGCAGCTAGTATATGATA+AGG 0.514462 8.4:-59743723 MS.gene92445:intron
CGGAACTCCAGAGCCAAAAT+GGG 0.516197 8.4:-59746029 MS.gene92445:CDS
ATTAAGGTTAAAGTTATGAA+AGG 0.516242 8.4:-59744410 MS.gene92445:CDS
TACAAATTTCTCTAGATGCA+TGG 0.539159 8.4:+59743601 None:intergenic
CATCATTGAAGCTAGATCAA+TGG 0.540544 8.4:-59745140 MS.gene92445:CDS
GAACATTCCTCCCCTTAAAG+TGG 0.545423 8.4:-59744150 MS.gene92445:intron
AAGGATGACATAAGGGTCAC+TGG 0.548413 8.4:+59744358 None:intergenic
TCCTCAAGGCATGAAAGTCC+TGG 0.549985 8.4:-59746537 MS.gene92445:CDS
AGTAACATACCTTTGATATG+TGG 0.551071 8.4:+59745784 None:intergenic
CCTGATACATCTTTCCTACC+AGG 0.552594 8.4:+59746519 None:intergenic
AGAGAAATTTGTAGCAAGCA+AGG 0.560939 8.4:-59743591 MS.gene92445:CDS
TCACTACATCTCTAATTGCT+AGG 0.565921 8.4:+59744381 None:intergenic
GCGCTGACAAGACATCATAT+CGG 0.569887 8.4:-59744746 MS.gene92445:CDS
ACCGAACTTACCACTTTAAG+GGG 0.573276 8.4:+59744140 None:intergenic
TGTCCATTTGTACCATCTCA+AGG 0.588611 8.4:-59744839 MS.gene92445:CDS
GATACACTTCTTCCTTGAGA+TGG 0.597028 8.4:+59744827 None:intergenic
TAAATGAAACATTACCAATG+AGG 0.599438 8.4:+59744661 None:intergenic
GACATGCATTCCGAAAGAGC+TGG 0.610586 8.4:-59744724 MS.gene92445:CDS
AAAGGCTAGAAATGTCCTCA+AGG 0.614230 8.4:-59746551 None:intergenic
GTGTCATATCTCTTGATGAT+GGG 0.614583 8.4:-59743547 MS.gene92445:CDS
TTTAGGAGTCCACATATCAA+AGG 0.615847 8.4:-59745793 MS.gene92445:intron
GGTGTCATATCTCTTGATGA+TGG 0.616255 8.4:-59743548 MS.gene92445:CDS
GACAACAGTCTTGTTAGAGA+TGG 0.617464 8.4:-59743569 MS.gene92445:CDS
ACCAGGACTTTCATGCCTTG+AGG 0.618520 8.4:+59746536 None:intergenic
AATTGCATACGAGAAATCTA+CGG 0.625889 8.4:-59743633 MS.gene92445:CDS
GCAATTGCAGCTAAAACTAG+TGG 0.635267 8.4:+59743650 None:intergenic
GAACTTACCACTTTAAGGGG+AGG 0.637663 8.4:+59744143 None:intergenic
CAAGGCATGAAAGTCCTGGT+AGG 0.641398 8.4:-59746533 MS.gene92445:CDS
GATGCATTAGAGAAGTTGGG+TGG 0.652196 8.4:-59745102 MS.gene92445:CDS
AGACTACAGAATGTTGAGAG+AGG 0.662594 8.4:-59743500 MS.gene92445:CDS
TAAGTGTAACATGAACTACT+CGG 0.721246 8.4:+59744797 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATATATAAAGACT+TGG + chr8.4:59745975-59745994 None:intergenic 10.0%
!! TTAATTAAATTTATTGTGTT+TGG - chr8.4:59746246-59746265 MS.gene92445:intron 10.0%
!! AAAAGTAAAAACTTATATCT+TGG - chr8.4:59743824-59743843 MS.gene92445:intron 15.0%
!! ATAAAAGAATATATTCCATT+AGG + chr8.4:59745460-59745479 None:intergenic 15.0%
!! ATTAATCATTCTATTATTCT+GGG + chr8.4:59743529-59743548 None:intergenic 15.0%
!! GTACCTAATAATTTATAAAA+AGG + chr8.4:59743891-59743910 None:intergenic 15.0%
!! TATAATGAAAAATTTAGTAG+AGG - chr8.4:59743659-59743678 MS.gene92445:CDS 15.0%
!!! AAATTCTTAACATCTTTTTA+GGG - chr8.4:59744518-59744537 MS.gene92445:intron 15.0%
!!! AAGCCTTTTTATAAATTATT+AGG - chr8.4:59743885-59743904 MS.gene92445:intron 15.0%
!!! TCTTATTTAAACTTTTTTAC+TGG - chr8.4:59744553-59744572 MS.gene92445:intron 15.0%
!!! TTTGGTTTTTTTATATTACT+TGG + chr8.4:59744958-59744977 None:intergenic 15.0%
!! AATTTATAAAAAGGCTTATG+TGG + chr8.4:59743882-59743901 None:intergenic 20.0%
!! ATCCAAAATAGAAATCAAAA+TGG - chr8.4:59745919-59745938 MS.gene92445:intron 20.0%
!! ATGAACTAATAATGATATAG+AGG + chr8.4:59744083-59744102 None:intergenic 20.0%
!! ATTAAGGTTAAAGTTATGAA+AGG - chr8.4:59745587-59745606 MS.gene92445:intron 20.0%
!! CAATGTCATAAATTAAACTT+TGG - chr8.4:59744457-59744476 MS.gene92445:intron 20.0%
!! GAAAAATATGAATAAAGTAG+AGG - chr8.4:59745704-59745723 MS.gene92445:intron 20.0%
!! GATTAATCATTCTATTATTC+TGG + chr8.4:59743530-59743549 None:intergenic 20.0%
!! TAATTTATTATCCTCTTGAA+AGG - chr8.4:59743848-59743867 MS.gene92445:intron 20.0%
!! TGTGTAATTCATATTATAGA+AGG - chr8.4:59746081-59746100 MS.gene92445:CDS 20.0%
!! TTAATCATTCTATTATTCTG+GGG + chr8.4:59743528-59743547 None:intergenic 20.0%
!! TTGTTACTATTTACTGTTAT+AGG - chr8.4:59745538-59745557 MS.gene92445:intron 20.0%
!!! AGTATTTTTTTCACAAAAAC+AGG + chr8.4:59743617-59743636 None:intergenic 20.0%
!!! ATTGCTTGATACATTTTAAA+AGG - chr8.4:59746214-59746233 MS.gene92445:intron 20.0%
!!! ATTTTCAACTGATGATTTTA+TGG - chr8.4:59746301-59746320 MS.gene92445:intron 20.0%
!!! CAAATTCTTAACATCTTTTT+AGG - chr8.4:59744517-59744536 MS.gene92445:intron 20.0%
!!! TTTTCAACTGATGATTTTAT+GGG - chr8.4:59746302-59746321 MS.gene92445:intron 20.0%
!!! TTTTTTCCTGAAAAATCATT+AGG + chr8.4:59745093-59745112 None:intergenic 20.0%
! AATTATTAGGTACACACAAA+AGG - chr8.4:59743898-59743917 MS.gene92445:intron 25.0%
! ACTAATAATGATATAGAGGT+TGG + chr8.4:59744079-59744098 None:intergenic 25.0%
! AGGACATTTCTTAATAACAA+TGG + chr8.4:59745073-59745092 None:intergenic 25.0%
! CAATCAACAATAGAGATAAA+TGG + chr8.4:59746198-59746217 None:intergenic 25.0%
! TAAAGTAGAGGAAATGAAAA+AGG - chr8.4:59745716-59745735 MS.gene92445:intron 25.0%
! TAAATGAAACATTACCAATG+AGG + chr8.4:59745339-59745358 None:intergenic 25.0%
! TAATCATTCTATTATTCTGG+GGG + chr8.4:59743527-59743546 None:intergenic 25.0%
! TCATTGACAGTAATTTAAGA+TGG + chr8.4:59744429-59744448 None:intergenic 25.0%
! TTAATATTTGTTCTTGCAGT+CGG - chr8.4:59745754-59745773 MS.gene92445:intron 25.0%
!! AAATGTCCTAATGATTTTTC+AGG - chr8.4:59745084-59745103 MS.gene92445:CDS 25.0%
!! TTCTATTTGTATGTTTTGTG+CGG - chr8.4:59745037-59745056 MS.gene92445:CDS 25.0%
!! TTGCATCAATTGATTCAAAA+AGG + chr8.4:59745409-59745428 None:intergenic 25.0%
!!! ATTTTTCAGGAAAAAATACG+AGG - chr8.4:59745097-59745116 MS.gene92445:CDS 25.0%
!!! TGAATTTGTTGGATTGATTA+AGG - chr8.4:59745571-59745590 MS.gene92445:intron 25.0%
!!! TGCCATTTTGATTTCTATTT+TGG + chr8.4:59745924-59745943 None:intergenic 25.0%
!!! TTAAGTACTGATTTTGATCA+AGG + chr8.4:59744795-59744814 None:intergenic 25.0%
AAAATCAGATCTTCAAGTCT+TGG - chr8.4:59744142-59744161 MS.gene92445:intron 30.0%
AAAATGATCTCCGAATCTAA+TGG - chr8.4:59743781-59743800 MS.gene92445:intron 30.0%
AAGAGATAAGAATACTCACT+TGG + chr8.4:59745676-59745695 None:intergenic 30.0%
AAGTTCGATTCAACGAAAAT+CGG + chr8.4:59744007-59744026 None:intergenic 30.0%
AATCATTCTATTATTCTGGG+GGG + chr8.4:59743526-59743545 None:intergenic 30.0%
AATTGCATACGAGAAATCTA+CGG - chr8.4:59746364-59746383 MS.gene92445:intron 30.0%
AGTAACATACCTTTGATATG+TGG + chr8.4:59744216-59744235 None:intergenic 30.0%
ATCTGTAATAGTCAAACATG+TGG + chr8.4:59744835-59744854 None:intergenic 30.0%
ATTAGACTTTCATTCCAAAC+TGG + chr8.4:59745812-59745831 None:intergenic 30.0%
GGAATAATTTGAATCCAGTT+TGG - chr8.4:59745795-59745814 MS.gene92445:CDS 30.0%
TAAGTGTAACATGAACTACT+CGG + chr8.4:59745203-59745222 None:intergenic 30.0%
TACAAATTTCTCTAGATGCA+TGG + chr8.4:59746399-59746418 None:intergenic 30.0%
TACTATTTACTGTTATAGGC+AGG - chr8.4:59745542-59745561 MS.gene92445:intron 30.0%
TAGTATTATGCATGACCTAA+TGG - chr8.4:59745442-59745461 MS.gene92445:intron 30.0%
TTTATTTGCATCAAGTGTTC+TGG - chr8.4:59744169-59744188 MS.gene92445:CDS 30.0%
! AAGAGAAAATGAAAGAGCAT+TGG + chr8.4:59746053-59746072 None:intergenic 30.0%
! TTTTCACAAAAACAGGTGAA+AGG + chr8.4:59743610-59743629 None:intergenic 30.0%
!! AAAATGGCATACTTTTTGCA+TGG - chr8.4:59745935-59745954 MS.gene92445:intron 30.0%
!! CTTATTTTCATAAGTCCTCT+AGG - chr8.4:59744611-59744630 MS.gene92445:intron 30.0%
!! TTCTATTTTGGATCTCAACA+CGG + chr8.4:59745912-59745931 None:intergenic 30.0%
!!! ACATCTTTTTAGGGTTTGTT+TGG - chr8.4:59744527-59744546 MS.gene92445:intron 30.0%
!!! ATTTTGATCAAGGTACTGTT+TGG + chr8.4:59744785-59744804 None:intergenic 30.0%
!!! ATTTTTTTCTCCGGATCTAA+AGG + chr8.4:59743766-59743785 None:intergenic 30.0%
!!! TTCGGTTGTTTTTCAGTTTA+TGG - chr8.4:59745874-59745893 MS.gene92445:intron 30.0%
!!! TTTTACTTTTTAGAGCAGCA+CGG + chr8.4:59743814-59743833 None:intergenic 30.0%
AACCGAACTTACCACTTTAA+GGG + chr8.4:59745861-59745880 None:intergenic 35.0%
ACCAATATCTCATGTGATGT+CGG + chr8.4:59744315-59744334 None:intergenic 35.0%
AGAGAAATTTGTAGCAAGCA+AGG - chr8.4:59746406-59746425 MS.gene92445:intron 35.0%
CAAAAACAGGTGAAAGGAAA+AGG + chr8.4:59743604-59743623 None:intergenic 35.0%
CATCATTGAAGCTAGATCAA+TGG - chr8.4:59744857-59744876 MS.gene92445:CDS 35.0%
CCAAAGAAAGGATGACATAA+GGG + chr8.4:59745649-59745668 None:intergenic 35.0%
CCTTATGTCATCCTTTCTTT+GGG - chr8.4:59745647-59745666 MS.gene92445:intron 35.0%
GCATTGGACATGAAAAAGAA+GGG + chr8.4:59746008-59746027 None:intergenic 35.0%
GGAAAAACAATCCAAAGCAA+AGG + chr8.4:59746032-59746051 None:intergenic 35.0%
GTGATGTACAATGTAGTGTA+TGG - chr8.4:59743709-59743728 MS.gene92445:CDS 35.0%
GTTGATGCATTAGAGAAGTT+GGG - chr8.4:59744892-59744911 MS.gene92445:CDS 35.0%
TCAAAGGAATTCCATGTAGA+AGG - chr8.4:59744394-59744413 MS.gene92445:CDS 35.0%
TCAAATTTGATGCATCAAGC+TGG - chr8.4:59743924-59743943 MS.gene92445:intron 35.0%
TCACTACATCTCTAATTGCT+AGG + chr8.4:59745619-59745638 None:intergenic 35.0%
TCTGGCATACATAGAAGTTT+AGG - chr8.4:59744187-59744206 MS.gene92445:CDS 35.0%
TGGTTAAGTTTCCTTTCAAG+AGG + chr8.4:59743862-59743881 None:intergenic 35.0%
TGTGCAGCTAGTATATGATA+AGG - chr8.4:59746274-59746293 MS.gene92445:intron 35.0%
TTCAGATCTCTAGTACTCAA+AGG - chr8.4:59744378-59744397 MS.gene92445:CDS 35.0%
TTTACTGTTATAGGCAGGTA+TGG - chr8.4:59745547-59745566 MS.gene92445:intron 35.0%
TTTAGGAGTCCACATATCAA+AGG - chr8.4:59744204-59744223 MS.gene92445:CDS 35.0%
! AGCATTGGACATGAAAAAGA+AGG + chr8.4:59746009-59746028 None:intergenic 35.0%
! AGTTGATGCATTAGAGAAGT+TGG - chr8.4:59744891-59744910 MS.gene92445:CDS 35.0%
! CAAGGAAGAAGTGTATCATT+AGG - chr8.4:59745176-59745195 MS.gene92445:intron 35.0%
! GTGTCATATCTCTTGATGAT+GGG - chr8.4:59746450-59746469 MS.gene92445:intron 35.0%
! TATTTGTATGTTTTGTGCGG+AGG - chr8.4:59745040-59745059 MS.gene92445:CDS 35.0%
! TCAATTGAGGTATGTGGTTT+TGG + chr8.4:59744976-59744995 None:intergenic 35.0%
! TTCGTTGAATCGAACTTGTT+AGG - chr8.4:59744010-59744029 MS.gene92445:intron 35.0%
!! TTCAAAGAAGAGTACCTCAT+TGG - chr8.4:59745322-59745341 MS.gene92445:intron 35.0%
!!! TCGGAGATCATTTTTTTCTC+CGG + chr8.4:59743775-59743794 None:intergenic 35.0%
ACCGAACTTACCACTTTAAG+GGG + chr8.4:59745860-59745879 None:intergenic 40.0%
AGACTACAGAATGTTGAGAG+AGG - chr8.4:59746497-59746516 MS.gene92445:intron 40.0%
CAACCGAACTTACCACTTTA+AGG + chr8.4:59745862-59745881 None:intergenic 40.0%
CCCAAAGAAAGGATGACATA+AGG + chr8.4:59745650-59745669 None:intergenic 40.0%
CCCTTATGTCATCCTTTCTT+TGG - chr8.4:59745646-59745665 MS.gene92445:intron 40.0%
CGGTAAAAACACGCGTTATA+AGG - chr8.4:59745774-59745793 MS.gene92445:intron 40.0%
CTTCCTTGAGATGGTACAAA+TGG + chr8.4:59745164-59745183 None:intergenic 40.0%
GATACACTTCTTCCTTGAGA+TGG + chr8.4:59745173-59745192 None:intergenic 40.0%
GCAATTGCAGCTAAAACTAG+TGG + chr8.4:59746350-59746369 None:intergenic 40.0%
GCAGGTATGGTTGAATTTGT+TGG - chr8.4:59745560-59745579 MS.gene92445:intron 40.0%
GTTACCTAGTTGAGCAAGTT+TGG + chr8.4:59743686-59743705 None:intergenic 40.0%
TCCCCTTAAAGTGGTAAGTT+CGG - chr8.4:59745856-59745875 MS.gene92445:intron 40.0%
TCCGACATCACATGAGATAT+TGG - chr8.4:59744311-59744330 MS.gene92445:intron 40.0%
TGCTGTAAAGCCTTTAGATC+CGG - chr8.4:59743753-59743772 MS.gene92445:intron 40.0%
TGTCCATTTGTACCATCTCA+AGG - chr8.4:59745158-59745177 MS.gene92445:intron 40.0%
! AATCCAAAGCAAAGGAGCAT+TGG + chr8.4:59746024-59746043 None:intergenic 40.0%
! ACCAACACTTACACCCATTT+TGG + chr8.4:59743984-59744003 None:intergenic 40.0%
! CTTTTCTTGTCCAGCTCTTT+CGG + chr8.4:59745286-59745305 None:intergenic 40.0%
! GGTGTCATATCTCTTGATGA+TGG - chr8.4:59746449-59746468 MS.gene92445:intron 40.0%
! GTTTTCGTCAGATATCCTAG+AGG + chr8.4:59744629-59744648 None:intergenic 40.0%
!! AAGAGCGCTCTGAATATATC+AGG - chr8.4:59744995-59745014 MS.gene92445:intron 40.0%
!! GACAACAGTCTTGTTAGAGA+TGG - chr8.4:59746428-59746447 MS.gene92445:intron 40.0%
AAGGATGACATAAGGGTCAC+TGG + chr8.4:59745642-59745661 None:intergenic 45.0%
AGACAGTCTCACAAGTCACA+AGG + chr8.4:59744586-59744605 None:intergenic 45.0%
CCTGATACATCTTTCCTACC+AGG + chr8.4:59743481-59743500 None:intergenic 45.0%
CCTGGTAGGAAAGATGTATC+AGG - chr8.4:59743478-59743497 MS.gene92445:CDS 45.0%
CGAGGAACTGCAGTTTATGA+TGG - chr8.4:59745115-59745134 MS.gene92445:CDS 45.0%
CGCTCTTCAATTGAGGTATG+TGG + chr8.4:59744982-59745001 None:intergenic 45.0%
GAACATTCCTCCCCTTAAAG+TGG - chr8.4:59745847-59745866 MS.gene92445:CDS 45.0%
GACAGTCTCACAAGTCACAA+GGG + chr8.4:59744585-59744604 None:intergenic 45.0%
GATGCATTAGAGAAGTTGGG+TGG - chr8.4:59744895-59744914 MS.gene92445:intron 45.0%
GCCAAAATGGGTGTAAGTGT+TGG - chr8.4:59743980-59743999 MS.gene92445:intron 45.0%
GGCATGTATCTCCTTCTACA+TGG + chr8.4:59744408-59744427 None:intergenic 45.0%
TGATGCATCAAGCTGGAAAC+AGG - chr8.4:59743931-59743950 MS.gene92445:intron 45.0%
TGTCCAATGCTCCTTTGCTT+TGG - chr8.4:59746018-59746037 MS.gene92445:intron 45.0%
TTAAGGGGAGGAATGTTCTC+TGG + chr8.4:59745845-59745864 None:intergenic 45.0%
! AGGACCAAACTTGCTCAACT+AGG - chr8.4:59743679-59743698 MS.gene92445:CDS 45.0%
! GAACTTACCACTTTAAGGGG+AGG + chr8.4:59745857-59745876 None:intergenic 45.0%
! GCGCTGACAAGACATCATAT+CGG - chr8.4:59745251-59745270 MS.gene92445:intron 45.0%
! TTCAGAGCGCTCTTCAATTG+AGG + chr8.4:59744989-59745008 None:intergenic 45.0%
!! TCACTTGGTGTCCCAAAGAA+AGG + chr8.4:59745661-59745680 None:intergenic 45.0%
!!! AACAGGTTTTGTGCCGATTG+CGG - chr8.4:59743948-59743967 MS.gene92445:intron 45.0%
!!! ACTTACACCCATTTTGGCTC+TGG + chr8.4:59743978-59743997 None:intergenic 45.0%
ACCAGGACTTTCATGCCTTG+AGG + chr8.4:59743464-59743483 None:intergenic 50.0%
CAAGGCATGAAAGTCCTGGT+AGG - chr8.4:59743464-59743483 MS.gene92445:CDS 50.0%
CGGAACTCCAGAGCCAAAAT+GGG - chr8.4:59743968-59743987 MS.gene92445:intron 50.0%
CGGTGCAGAGCCATTAGATT+CGG + chr8.4:59743794-59743813 None:intergenic 50.0%
CTCTAGATGCATGGACTCGT+TGG + chr8.4:59746390-59746409 None:intergenic 50.0%
GACATGCATTCCGAAAGAGC+TGG - chr8.4:59745273-59745292 MS.gene92445:intron 50.0%
TCCTCAAGGCATGAAAGTCC+TGG - chr8.4:59743460-59743479 MS.gene92445:CDS 50.0%
GCGGAACTCCAGAGCCAAAA+TGG - chr8.4:59743967-59743986 MS.gene92445:intron 55.0%
!! TGGCTCTGGAGTTCCGCAAT+CGG + chr8.4:59743964-59743983 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 59743457 59746562 59743457 ID=MS.gene92445
chr8.4 mRNA 59743457 59746562 59743457 ID=MS.gene92445.t1;Parent=MS.gene92445
chr8.4 exon 59746520 59746562 59746520 ID=MS.gene92445.t1.exon1;Parent=MS.gene92445.t1
chr8.4 CDS 59746520 59746562 59746520 ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1
chr8.4 exon 59746028 59746112 59746028 ID=MS.gene92445.t1.exon2;Parent=MS.gene92445.t1
chr8.4 CDS 59746028 59746112 59746028 ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1
chr8.4 exon 59745794 59745869 59745794 ID=MS.gene92445.t1.exon3;Parent=MS.gene92445.t1
chr8.4 CDS 59745794 59745869 59745794 ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1
chr8.4 exon 59745003 59745166 59745003 ID=MS.gene92445.t1.exon4;Parent=MS.gene92445.t1
chr8.4 CDS 59745003 59745166 59745003 ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1
chr8.4 exon 59744676 59744913 59744676 ID=MS.gene92445.t1.exon5;Parent=MS.gene92445.t1
chr8.4 CDS 59744676 59744913 59744676 ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1
chr8.4 exon 59744343 59744459 59744343 ID=MS.gene92445.t1.exon6;Parent=MS.gene92445.t1
chr8.4 CDS 59744343 59744459 59744343 ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1
chr8.4 exon 59744151 59744246 59744151 ID=MS.gene92445.t1.exon7;Parent=MS.gene92445.t1
chr8.4 CDS 59744151 59744246 59744151 ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1
chr8.4 exon 59743457 59743738 59743457 ID=MS.gene92445.t1.exon8;Parent=MS.gene92445.t1
chr8.4 CDS 59743457 59743738 59743457 ID=cds.MS.gene92445.t1;Parent=MS.gene92445.t1
Gene Sequence

>MS.gene92445

ATGTCCTCAAGGCATGAAAGTCCTGGTAGGAAAGATGTATCAGGTTAGAACATTTCATCATTTACACCCCCCAGAATAATAGAATGATTAATCTTGTACAAAAATAAAAATAGATTTATTCATATAATACAATCTTTTCATCAACCTTTTCCTTTCACCTGTTTTTGTGAAAAAAATACTGTATGAAAAAAAAAATTCATAATATAATGAAAAATTTAGTAGAGGACCAAACTTGCTCAACTAGGTAACTTAGTGATGTACAATGTAGTGTATGGATTCTCTGCAGCGTTGCGACATGCTGTAAAGCCTTTAGATCCGGAGAAAAAAATGATCTCCGAATCTAATGGCTCTGCACCGTGCTGCTCTAAAAAGTAAAAACTTATATCTTGGTTAATTTATTATCCTCTTGAAAGGAAACTTAACCACATAAGCCTTTTTATAAATTATTAGGTACACACAAAAGGCTATCAAATTTGATGCATCAAGCTGGAAACAGGTTTTGTGCCGATTGCGGAACTCCAGAGCCAAAATGGGTGTAAGTGTTGGTCCGATTTTCGTTGAATCGAACTTGTTAGGATATTTCACTGTTTTTTTTTATTCTAAATAACATTATCAGTAGCCAACCTCTATATCATTATTAGTTCATGTTATTCACACTTGTTCTTATTCATTTCATTGTTTATTGAAAATCAGATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGTTTAGGAGTCCACATATCAAAGGTATGTTACTGATTAAGCATTACATGTTTATCGAAATATGAGTTCATCACTCGACATTGATTGTTAGTATTTGTGAAAATGTTTATCCGACATCACATGAGATATTGGTCAAATAAAATGCTTGCATATAGATTGAAAAAGAATGTCATGAGTTCAGATCTCTAGTACTCAAAGGAATTCCATGTAGAAGGAGATACATGCCATCTTAAATTACTGTCAATGAGAAATAAGCAATGTCATAAATTAAACTTTGGTAGCTTAGAACTAAACTAAAAGTGAGTCTGCATACATCAAATTCTTAACATCTTTTTAGGGTTTGTTTGGATTTCTTATTTAAACTTTTTTACTGGCATAGTCCCTTGTGACTTGTGAGACTGTCTGAGAACTTATTTTCATAAGTCCTCTAGGATATCTGACGAAAACTGCTTATAGTTTATGTAAAATTTAAAATAGTTCGACTTTATTTTATCTTTTGTTATAAAAAAAGTTTATACATAAGCACTTATATGATAGACGTTTATAGCTTATAGTGTAAATGCTCAATCAAGTTGTTAATCCAAACAGTACCTTGATCAAAATCAGTACTTAAATACTGCTACATGAGCACCACATGTTTGACTATTACAGATTGCATCATTGAAGCTAGATCAATGGTCAGATGAACAAGTTGATGCATTAGAGAAGTTGGGTGGAAATACATTGTTAAATAAAAAATATGAAGCTTGCTTACCAAGTAATATAAAAAAACCAAAACCACATACCTCAATTGAAGAGCGCTCTGAATATATCAGGTAACTAAAAGTAAACAGAATTCTATTTGTATGTTTTGTGCGGAGGAATCGCACCATTGTTATTAAGAAATGTCCTAATGATTTTTCAGGAAAAAATACGAGGAACTGCAGTTTATGATGGATAGTGATGAGAATTCATCATGTCCATTTGTACCATCTCAAGGAAGAAGTGTATCATTAGGTCCGAGTAGTTCATGTTACACTTATCATATTGACAACAAAAAATACGACAAAGCGCTGACAAGACATCATATCGGACATGCATTCCGAAAGAGCTGGACAAGAAAAGATTCTGAGCACAAGTGTTCAAAGAAGAGTACCTCATTGGTAATGTTTCATTTAATAAATGACAATTATATCAGCAAAATTTTCATATAAACTAAAGTACTCCTTTTTGAATCAATTGATGCAACAAATATGCTATATAGTATTATGCATGACCTAATGGAATATATTCTTTTATGATAAACTTATTGAAATGTTGTCTTTCTTTTTTCTTTTTTCTTTTTGAATACTCAGTTTTGTTACTATTTACTGTTATAGGCAGGTATGGTTGAATTTGTTGGATTGATTAAGGTTAAAGTTATGAAAGGCACTCACCTAGCAATTAGAGATGTAGTGACCAGTGACCCTTATGTCATCCTTTCTTTGGGACACCAAGTGAGTATTCTTATCTCTTAACTACTTGAAAAATATGAATAAAGTAGAGGAAATGAAAAAGGTATAGTGTAACACTTTTAATATTTGTTCTTGCAGTCGGTAAAAACACGCGTTATAAGGAATAATTTGAATCCAGTTTGGAATGAAAGTCTAATGCTATCAATTCCAGAGAACATTCCTCCCCTTAAAGTGGTAAGTTCGGTTGTTTTTCAGTTTATGGTAATCTCTAAATCCGTGTTGAGATCCAAAATAGAAATCAAAATGGCATACTTTTTGCATGGTTTTAATTATGTGACCAAGTCTTTATATATTTTTTTTTTTTATTTCTCCCTTCTTTTTCATGTCCAATGCTCCTTTGCTTTGGATTGTTTTTCCAATGCTCTTTCATTTTCTCTTTATATCTTTGTGTAATTCATATTATAGAAGGAAAAAAATAGCTAGATATTTCTTCTTACTAATTTTTGTTCTTGTACTTCATGTAACTGTCTTTGCATTTACATTTACATCATAAATCACTGCCATTTATCTCTATTGTTGATTGCTTGATACATTTTAAAAGGAAATCATGTTTAATTAAATTTATTGTGTTTGGTCTCATGTGCAGCTAGTATATGATAAGGATACATTTTCAACTGATGATTTTATGGGCGAAGCTGAAATAGACATTCAACCACTAGTTTTAGCTGCAATTGCATACGAGAAATCTACGGCCAACGAGTCCATGCATCTAGAGAAATTTGTAGCAAGCAAGGACAACAGTCTTGTTAGAGATGGTGTCATATCTCTTGATGATGGGAAGATCAAACAAGAAATCTCAGTGAGACTACAGAATGTTGAGAGAGGTGTTCTTGAGATTGAGCTTGAGTGTGTTCCTCTAATTCAATAG

Protein sequence

>MS.gene92445.t1

MSSRHESPGRKDVSGTHKRLSNLMHQAGNRFCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKIASLKLDQWSDEQVDALEKLGGNTLLNKKYEACLPSNIKKPKPHTSIEERSEYIRKKYEELQFMMDSDENSSCPFVPSQGRSVSLGPSSSCYTYHIDNKKYDKALTRHHIGHAFRKSWTRKDSEHKCSKKSTSLAGMVEFVGLIKVKVMKGTHLAIRDVVTSDPYVILSLGHQSVKTRVIRNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVLAAIAYEKSTANESMHLEKFVASKDNSLVRDGVISLDDGKIKQEISVRLQNVERGVLEIELECVPLIQ