Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94555.t1 | AEL30895.1 | 85.4 | 384 | 31 | 4 | 1 | 360 | 1 | 383 | 1.50E-164 | 589 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94555.t1 | Q6X7K0 | 40.7 | 386 | 167 | 11 | 1 | 360 | 1 | 350 | 1.2e-40 | 168.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94555.t1 | G0ZGT6 | 85.4 | 384 | 31 | 4 | 1 | 360 | 1 | 383 | 1.1e-164 | 589.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene94555.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene94555 | 0.810532 | 1.10E-50 | -1.69E-46 |
| MS.gene050563 | MS.gene94555 | 0.82332 | 1.48E-53 | -1.69E-46 |
| MS.gene050584 | MS.gene94555 | 0.856255 | 3.64E-62 | -1.69E-46 |
| MS.gene050585 | MS.gene94555 | 0.840807 | 6.96E-58 | -1.69E-46 |
| MS.gene050587 | MS.gene94555 | 0.8938 | 4.48E-75 | -1.69E-46 |
| MS.gene05143 | MS.gene94555 | 0.820805 | 5.65E-53 | -1.69E-46 |
| MS.gene051789 | MS.gene94555 | 0.814524 | 1.47E-51 | -1.69E-46 |
| MS.gene052142 | MS.gene94555 | 0.88542 | 8.26E-72 | -1.69E-46 |
| MS.gene052187 | MS.gene94555 | 0.802005 | 6.89E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene94555 | 0.827534 | 1.48E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene94555 | 0.847527 | 1.09E-59 | -1.69E-46 |
| MS.gene05456 | MS.gene94555 | 0.85767 | 1.39E-62 | -1.69E-46 |
| MS.gene055359 | MS.gene94555 | 0.851421 | 8.97E-61 | -1.69E-46 |
| MS.gene059006 | MS.gene94555 | 0.847741 | 9.54E-60 | -1.69E-46 |
| MS.gene059632 | MS.gene94555 | 0.834731 | 2.53E-56 | -1.69E-46 |
| MS.gene059768 | MS.gene94555 | 0.808112 | 3.63E-50 | -1.69E-46 |
| MS.gene060691 | MS.gene94555 | 0.811391 | 7.17E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94555.t1 | MTR_8g107210 | 85.676 | 377 | 18 | 8 | 1 | 360 | 1 | 358 | 0.0 | 612 |
| MS.gene94555.t1 | MTR_8g095580 | 83.019 | 159 | 9 | 4 | 1 | 154 | 1 | 146 | 7.44e-86 | 257 |
| MS.gene94555.t1 | MTR_3g088485 | 82.803 | 157 | 11 | 2 | 1 | 154 | 1 | 144 | 5.68e-85 | 254 |
| MS.gene94555.t1 | MTR_4g084550 | 50.318 | 157 | 61 | 4 | 42 | 191 | 26 | 172 | 1.07e-37 | 134 |
| MS.gene94555.t1 | MTR_7g060630 | 74.627 | 67 | 17 | 0 | 88 | 154 | 6 | 72 | 3.17e-28 | 109 |
| MS.gene94555.t1 | MTR_1g019130 | 75.000 | 64 | 16 | 0 | 89 | 152 | 89 | 152 | 2.15e-27 | 108 |
| MS.gene94555.t1 | MTR_1g019130 | 75.000 | 64 | 16 | 0 | 89 | 152 | 89 | 152 | 1.18e-26 | 106 |
| MS.gene94555.t1 | MTR_4g063735 | 62.338 | 77 | 27 | 1 | 90 | 166 | 25 | 99 | 2.14e-26 | 106 |
| MS.gene94555.t1 | MTR_5g081990 | 71.429 | 63 | 18 | 0 | 90 | 152 | 33 | 95 | 7.12e-26 | 102 |
| MS.gene94555.t1 | MTR_5g021930 | 70.769 | 65 | 18 | 1 | 88 | 151 | 28 | 92 | 2.87e-25 | 103 |
| MS.gene94555.t1 | MTR_7g025010 | 50.000 | 62 | 31 | 0 | 90 | 151 | 47 | 108 | 1.27e-15 | 78.6 |
| MS.gene94555.t1 | MTR_2g015000 | 50.000 | 62 | 31 | 0 | 90 | 151 | 55 | 116 | 1.83e-15 | 77.8 |
| MS.gene94555.t1 | MTR_7g023810 | 36.170 | 94 | 60 | 0 | 90 | 183 | 68 | 161 | 4.00e-14 | 70.5 |
| MS.gene94555.t1 | MTR_4g088070 | 45.902 | 61 | 33 | 0 | 90 | 150 | 29 | 89 | 6.08e-14 | 72.8 |
| MS.gene94555.t1 | MTR_1g115315 | 40.741 | 81 | 46 | 1 | 90 | 168 | 85 | 165 | 5.01e-13 | 68.9 |
| MS.gene94555.t1 | MTR_1g115315 | 40.741 | 81 | 46 | 1 | 90 | 168 | 85 | 165 | 6.26e-13 | 68.6 |
| MS.gene94555.t1 | MTR_4g088080 | 44.262 | 61 | 34 | 0 | 90 | 150 | 40 | 100 | 3.01e-12 | 67.0 |
| MS.gene94555.t1 | MTR_3g115620 | 42.623 | 61 | 35 | 0 | 90 | 150 | 82 | 142 | 4.53e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94555.t1 | AT3G18010 | 36.567 | 402 | 161 | 14 | 1 | 360 | 1 | 350 | 2.59e-62 | 203 |
| MS.gene94555.t1 | AT2G01500 | 57.692 | 104 | 38 | 3 | 43 | 144 | 16 | 115 | 3.60e-29 | 114 |
| MS.gene94555.t1 | AT2G28610 | 71.014 | 69 | 20 | 0 | 86 | 154 | 4 | 72 | 7.45e-29 | 112 |
| MS.gene94555.t1 | AT5G59340 | 60.714 | 84 | 31 | 1 | 83 | 166 | 7 | 88 | 1.48e-27 | 109 |
| MS.gene94555.t1 | AT1G46480 | 70.769 | 65 | 19 | 0 | 88 | 152 | 88 | 152 | 2.32e-26 | 104 |
| MS.gene94555.t1 | AT3G11260 | 62.162 | 74 | 28 | 0 | 79 | 152 | 13 | 86 | 4.02e-26 | 103 |
| MS.gene94555.t1 | AT1G46480 | 70.769 | 65 | 19 | 0 | 88 | 152 | 88 | 152 | 1.81e-25 | 103 |
| MS.gene94555.t1 | AT2G17950 | 69.697 | 66 | 19 | 1 | 87 | 151 | 35 | 100 | 1.05e-24 | 102 |
| MS.gene94555.t1 | AT5G05770 | 59.459 | 74 | 28 | 1 | 88 | 161 | 27 | 98 | 3.46e-23 | 93.6 |
| MS.gene94555.t1 | AT5G45980 | 37.963 | 108 | 58 | 2 | 90 | 197 | 55 | 153 | 3.27e-16 | 79.0 |
| MS.gene94555.t1 | AT2G33880 | 50.000 | 62 | 31 | 0 | 90 | 151 | 55 | 116 | 4.30e-15 | 76.3 |
| MS.gene94555.t1 | AT2G33880 | 50.000 | 62 | 31 | 0 | 90 | 151 | 55 | 116 | 4.42e-15 | 76.3 |
| MS.gene94555.t1 | AT4G35550 | 47.541 | 61 | 32 | 0 | 90 | 150 | 99 | 159 | 5.02e-13 | 68.9 |
| MS.gene94555.t1 | AT1G20700 | 33.684 | 95 | 59 | 1 | 90 | 180 | 33 | 127 | 2.06e-11 | 62.0 |
| MS.gene94555.t1 | AT3G03660 | 42.029 | 69 | 40 | 0 | 73 | 141 | 16 | 84 | 3.75e-11 | 63.5 |
| MS.gene94555.t1 | AT1G20700 | 33.684 | 95 | 59 | 1 | 90 | 180 | 95 | 189 | 4.56e-11 | 62.0 |
| MS.gene94555.t1 | AT3G03660 | 42.029 | 69 | 40 | 0 | 73 | 141 | 16 | 84 | 4.78e-11 | 63.5 |
| MS.gene94555.t1 | AT1G20700 | 33.684 | 95 | 59 | 1 | 90 | 180 | 95 | 189 | 5.22e-11 | 62.0 |
| MS.gene94555.t1 | AT3G03660 | 42.029 | 69 | 40 | 0 | 73 | 141 | 16 | 84 | 6.08e-11 | 63.2 |
| MS.gene94555.t1 | AT3G03660 | 42.029 | 69 | 40 | 0 | 73 | 141 | 16 | 84 | 7.22e-11 | 63.2 |
| MS.gene94555.t1 | AT5G17810 | 45.455 | 55 | 30 | 0 | 87 | 141 | 18 | 72 | 7.77e-11 | 62.4 |
| MS.gene94555.t1 | AT5G17810 | 45.455 | 55 | 30 | 0 | 87 | 141 | 18 | 72 | 8.22e-11 | 62.4 |
| MS.gene94555.t1 | AT5G17810 | 45.455 | 55 | 30 | 0 | 87 | 141 | 18 | 72 | 8.22e-11 | 62.4 |
Find 76 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGATCTCCATTCCTTAT+TGG | 0.159741 | 4.1:-324467 | None:intergenic |
| ACAGCAAAGAAGAAACTTTA+TGG | 0.180399 | 4.1:+324169 | MS.gene94555:CDS |
| GCCACCATGAATGCGGTTTA+AGG | 0.219928 | 4.1:-322571 | None:intergenic |
| TCCAGTGCTCTTAACTGTTC+TGG | 0.231980 | 4.1:-322821 | None:intergenic |
| CATGATCTCCATTCCTTATT+GGG | 0.239327 | 4.1:-324466 | None:intergenic |
| ACTGCCCAGCTTAGAAAGTT+TGG | 0.297339 | 4.1:+322899 | MS.gene94555:CDS |
| GTAATTCTGCTTCATCGAAT+TGG | 0.317991 | 4.1:-324148 | None:intergenic |
| CACAGTAACAACTAGACTTA+TGG | 0.319387 | 4.1:+324289 | MS.gene94555:CDS |
| GTTATAGTTGAAGTGTTGTT+AGG | 0.334243 | 4.1:-322543 | None:intergenic |
| TAAGCTGGGCAGTGATTTGT+TGG | 0.366393 | 4.1:-322889 | None:intergenic |
| CCTTCCTTAAACCGCATTCA+TGG | 0.383571 | 4.1:+322567 | MS.gene94555:CDS |
| GTGTTGTTAGGAGAAGTAGT+AGG | 0.385300 | 4.1:-322531 | None:intergenic |
| TGTAGTTGATACTGTTTAAG+TGG | 0.389042 | 4.1:-324400 | None:intergenic |
| TTGTAGTAGAGGTGTTTAAG+AGG | 0.411927 | 4.1:-324241 | None:intergenic |
| GCTCTTAACTGTTCTGGTGT+TGG | 0.418756 | 4.1:-322815 | None:intergenic |
| ACGGAAGAAACTCAATAAAC+TGG | 0.421182 | 4.1:-324577 | None:intergenic |
| GCTCTTGAAAAGAAAGACTT+AGG | 0.434053 | 4.1:+323025 | MS.gene94555:CDS |
| AAATGAATAAGTTGAAATCA+TGG | 0.434791 | 4.1:-324331 | None:intergenic |
| GAACTCACCACAACTGCTGC+TGG | 0.437507 | 4.1:-322782 | None:intergenic |
| CAGCAGTTGTGGTGAGTTCA+AGG | 0.440070 | 4.1:+322786 | MS.gene94555:CDS |
| ATATCTCTGTCTCTTTGTGT+TGG | 0.444978 | 4.1:-324529 | None:intergenic |
| GTAGGGACTGGGACTGGTCT+TGG | 0.448389 | 4.1:-322513 | None:intergenic |
| CATACTACAACTACAAAGAA+AGG | 0.456924 | 4.1:+324363 | MS.gene94555:CDS |
| AACATGGCTGATTATCCATT+CGG | 0.461072 | 4.1:+322465 | MS.gene94555:CDS |
| TGTTGTTAGGAGAAGTAGTA+GGG | 0.464395 | 4.1:-322530 | None:intergenic |
| TCCTTATTGGGAAAAGTTGA+AGG | 0.475905 | 4.1:-324454 | None:intergenic |
| TGTAGTAGAGGTGTTTAAGA+GGG | 0.476333 | 4.1:-324240 | None:intergenic |
| CCAATAAGGAATGGAGATCA+TGG | 0.480192 | 4.1:+324467 | MS.gene94555:CDS |
| CAGAAGCTGATTCCATTTGA+CGG | 0.492044 | 4.1:-322991 | None:intergenic |
| TCTAGTTGTTACTGTGGTTG+TGG | 0.492333 | 4.1:-324282 | None:intergenic |
| AGAAACTCAATAAACTGGTT+GGG | 0.503624 | 4.1:-324572 | None:intergenic |
| AAGAAACTCAATAAACTGGT+TGG | 0.507314 | 4.1:-324573 | None:intergenic |
| ACCAGAACAGTTAAGAGCAC+TGG | 0.518122 | 4.1:+322820 | MS.gene94555:CDS |
| AGAATCACAAAGCTAGAGAA+AGG | 0.519499 | 4.1:+322957 | MS.gene94555:CDS |
| CTGATTATCCATTCGGTGGA+AGG | 0.525296 | 4.1:+322472 | MS.gene94555:CDS |
| ATACTACAACTACAAAGAAA+GGG | 0.528240 | 4.1:+324364 | MS.gene94555:CDS |
| TGTTGGATTTGTTCAGCAGA+AGG | 0.532776 | 4.1:-322872 | None:intergenic |
| GTAGAGGTGTTTAAGAGGGT+AGG | 0.534985 | 4.1:-324236 | None:intergenic |
| AATGAATAAGTTGAAATCAT+GGG | 0.536539 | 4.1:-324330 | None:intergenic |
| GAAGTAGTAGGGACTGGGAC+TGG | 0.539424 | 4.1:-322519 | None:intergenic |
| GGGACTGGTCTTGGCATGAG+AGG | 0.539540 | 4.1:-322504 | None:intergenic |
| GATCAGTACTCTAGAACAGA+TGG | 0.548364 | 4.1:+324119 | MS.gene94555:intron |
| CATTCGGTGGAAGGAAACTA+AGG | 0.548710 | 4.1:+322481 | MS.gene94555:CDS |
| AAAGAAGAAACTTTATGGAA+AGG | 0.550327 | 4.1:+324174 | MS.gene94555:CDS |
| CTTAGTTTCCTTCCACCGAA+TGG | 0.550835 | 4.1:-322480 | None:intergenic |
| TTAGGAGAAGTAGTAGGGAC+TGG | 0.552441 | 4.1:-322525 | None:intergenic |
| TAATAATCCAGCAGCAGTTG+TGG | 0.553191 | 4.1:+322775 | MS.gene94555:CDS |
| AAGAGGAAGAGTACTGGTAC+TGG | 0.555814 | 4.1:-323262 | None:intergenic |
| CCTTATTGGGAAAAGTTGAA+GGG | 0.559443 | 4.1:-324453 | None:intergenic |
| TGGATGGTGGGTTACAATGA+AGG | 0.562024 | 4.1:+322432 | MS.gene94555:CDS |
| CTGGAAGAATTGTATAGAAG+AGG | 0.567704 | 4.1:+322839 | MS.gene94555:CDS |
| CATAAGTCTAGTTGTTACTG+TGG | 0.571838 | 4.1:-324288 | None:intergenic |
| AGTTGTTACTGTGGTTGTGG+TGG | 0.572763 | 4.1:-324279 | None:intergenic |
| CTCTGCAAGAGGAAGAGTAC+TGG | 0.573556 | 4.1:-323268 | None:intergenic |
| CCATGAATGCGGTTTAAGGA+AGG | 0.585809 | 4.1:-322567 | None:intergenic |
| GCTAGCTGTTGTTGTAGTAG+AGG | 0.592314 | 4.1:-324252 | None:intergenic |
| GAATTATAGACCTCTGCAAG+AGG | 0.592853 | 4.1:-323279 | None:intergenic |
| TTGTAGTTGTAGTATGTGTG+AGG | 0.596125 | 4.1:-324356 | None:intergenic |
| TAGGAGAAGTAGTAGGGACT+GGG | 0.599416 | 4.1:-322524 | None:intergenic |
| CAGTACTCTTCCTCTTGCAG+AGG | 0.600602 | 4.1:+323269 | MS.gene94555:CDS |
| ACTGGTACTGGAATTTGTAG+AGG | 0.614002 | 4.1:-323250 | None:intergenic |
| ATGGTGGGTTACAATGAAGG+TGG | 0.633455 | 4.1:+322435 | MS.gene94555:CDS |
| TACTACAACAACAGCTAGCG+TGG | 0.635131 | 4.1:+324256 | MS.gene94555:CDS |
| CTGGTACTGGAATTTGTAGA+GGG | 0.635755 | 4.1:-323249 | None:intergenic |
| AGTTGACAACATGTGGATGG+TGG | 0.636173 | 4.1:+322419 | None:intergenic |
| ATGGCTGATTATCCATTCGG+TGG | 0.637470 | 4.1:+322468 | MS.gene94555:CDS |
| AATCATTGCCACCATGAATG+CGG | 0.641369 | 4.1:-322578 | None:intergenic |
| AGTACTCTAGAACAGATGGA+TGG | 0.652013 | 4.1:+324123 | MS.gene94555:intron |
| TCCTTAAACCGCATTCATGG+TGG | 0.652436 | 4.1:+322570 | MS.gene94555:CDS |
| CATCACAATCTGCAGCAGCA+AGG | 0.652597 | 4.1:+322615 | MS.gene94555:CDS |
| GTTGACAACATGTGGATGGT+GGG | 0.672963 | 4.1:+322420 | None:intergenic |
| CCTAGTTGACAACATGTGGA+TGG | 0.687638 | 4.1:+322416 | None:intergenic |
| TGAAGGTGGTGAGTTCAACA+TGG | 0.718834 | 4.1:+322449 | MS.gene94555:CDS |
| CAGTTGTGGTGAGTTCAAGG+TGG | 0.724586 | 4.1:+322789 | MS.gene94555:CDS |
| TTATGGAAAGGAATGCCACG+TGG | 0.750564 | 4.1:+324186 | MS.gene94555:CDS |
| TAACTGCATCATATGCCACG+TGG | 0.781883 | 4.1:-324201 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATAAAATAAAAAA+AGG | - | chr4.1:323852-323871 | None:intergenic | 0.0% |
| !! | AACATATATAAAAACAATAT+TGG | - | chr4.1:322686-322705 | None:intergenic | 10.0% |
| !! | TAAAATAAAATAAAAAAAGG+TGG | - | chr4.1:323849-323868 | None:intergenic | 10.0% |
| !! | GAAAGAAAGAATTTAATTAA+AGG | - | chr4.1:324034-324053 | None:intergenic | 15.0% |
| !! | TTTAAGGAATAATAATCATA+AGG | + | chr4.1:323418-323437 | MS.gene94555:intron | 15.0% |
| !! | AAAAAACAAAAACTAACCAT+AGG | - | chr4.1:323945-323964 | None:intergenic | 20.0% |
| !! | AGAAAAGAAAAGAAAAGAAA+AGG | + | chr4.1:323563-323582 | MS.gene94555:intron | 20.0% |
| !! | AGGTAAGAAAGAAAAAAAAA+GGG | - | chr4.1:323925-323944 | None:intergenic | 20.0% |
| !! | TAGGTAAGAAAGAAAAAAAA+AGG | - | chr4.1:323926-323945 | None:intergenic | 20.0% |
| !! | TTTCATAGAAAGAAGAATAA+TGG | - | chr4.1:323761-323780 | None:intergenic | 20.0% |
| !!! | AAATGAATAAGTTGAAATCA+TGG | - | chr4.1:324334-324353 | None:intergenic | 20.0% |
| !!! | AATGAATAAGTTGAAATCAT+GGG | - | chr4.1:324333-324352 | None:intergenic | 20.0% |
| !!! | ATTATTCCTTAAAGACTTTT+TGG | - | chr4.1:323411-323430 | None:intergenic | 20.0% |
| !!! | TTTAGTATTTTTTTGAGTTG+AGG | + | chr4.1:323984-324003 | MS.gene94555:intron | 20.0% |
| !!! | TTTTTTTTCTTTCTTACCTA+TGG | + | chr4.1:323926-323945 | MS.gene94555:intron | 20.0% |
| ! | AAAAGAGATATGTATTTGTC+TGG | - | chr4.1:323366-323385 | None:intergenic | 25.0% |
| ! | AAAATACTAAATAACGTGTG+AGG | - | chr4.1:323975-323994 | None:intergenic | 25.0% |
| ! | AAAGAAGAAACTTTATGGAA+AGG | + | chr4.1:324174-324193 | MS.gene94555:CDS | 25.0% |
| ! | AAATAAAAAAAGGTGGATGT+TGG | - | chr4.1:323842-323861 | None:intergenic | 25.0% |
| ! | AATTCACCAAAAAGTCTTTA+AGG | + | chr4.1:323402-323421 | MS.gene94555:intron | 25.0% |
| ! | AGAAAGTTTGGAAAAATTGA+AGG | + | chr4.1:322911-322930 | MS.gene94555:CDS | 25.0% |
| ! | ATACTACAACTACAAAGAAA+GGG | + | chr4.1:324364-324383 | MS.gene94555:CDS | 25.0% |
| ! | CTGTAATTATTTAGTGTTAG+AGG | + | chr4.1:323062-323081 | MS.gene94555:intron | 25.0% |
| ! | TCATGTAGTATGTACTAATA+AGG | - | chr4.1:323093-323112 | None:intergenic | 25.0% |
| !! | AAGGCAAAAATGTTTTCTAT+TGG | + | chr4.1:322930-322949 | MS.gene94555:CDS | 25.0% |
| !! | TGATATGTTTTATCATGAGT+AGG | + | chr4.1:322725-322744 | MS.gene94555:intron | 25.0% |
| !!! | AATTTGTTGGGAAATGAAAA+GGG | + | chr4.1:323611-323630 | MS.gene94555:intron | 25.0% |
| !!! | ACTTTTTGGTGAATTGATTA+AGG | - | chr4.1:323397-323416 | None:intergenic | 25.0% |
| !!! | CTTTTTGGTGAATTGATTAA+GGG | - | chr4.1:323396-323415 | None:intergenic | 25.0% |
| !!! | TAATTTGTTGGGAAATGAAA+AGG | + | chr4.1:323610-323629 | MS.gene94555:intron | 25.0% |
| !!! | TTGTTTTTCTTTTTGTCAAC+AGG | + | chr4.1:323180-323199 | MS.gene94555:intron | 25.0% |
| AAGAAACTCAATAAACTGGT+TGG | - | chr4.1:324576-324595 | None:intergenic | 30.0% | |
| ACAGCAAAGAAGAAACTTTA+TGG | + | chr4.1:324169-324188 | MS.gene94555:CDS | 30.0% | |
| AGAAACTCAATAAACTGGTT+GGG | - | chr4.1:324575-324594 | None:intergenic | 30.0% | |
| AGGAATCTGTTTCAATTCAA+AGG | + | chr4.1:324069-324088 | MS.gene94555:intron | 30.0% | |
| CATACTACAACTACAAAGAA+AGG | + | chr4.1:324363-324382 | MS.gene94555:CDS | 30.0% | |
| CTTTCTTTCTTTCTTTCTAC+AGG | + | chr4.1:324049-324068 | MS.gene94555:intron | 30.0% | |
| GGAATCTGTTTCAATTCAAA+GGG | + | chr4.1:324070-324089 | MS.gene94555:intron | 30.0% | |
| GTGAAGTCAAATTAAAGCAA+GGG | - | chr4.1:323814-323833 | None:intergenic | 30.0% | |
| TAAATAACGTGTGAGGAAAA+AGG | - | chr4.1:323968-323987 | None:intergenic | 30.0% | |
| TAATGCACAAACTAGGTATA+GGG | + | chr4.1:323534-323553 | MS.gene94555:intron | 30.0% | |
| TCATTCATTCGTATTGTTGT+TGG | + | chr4.1:323132-323151 | MS.gene94555:intron | 30.0% | |
| TGCTGTTATGAAATTTAGCT+GGG | + | chr4.1:323669-323688 | MS.gene94555:intron | 30.0% | |
| TGTGAAGTCAAATTAAAGCA+AGG | - | chr4.1:323815-323834 | None:intergenic | 30.0% | |
| TTAGTACATACTACATGACA+TGG | + | chr4.1:323095-323114 | MS.gene94555:intron | 30.0% | |
| ! | AAAAAAAAAGGGCATATGCA+CGG | - | chr4.1:323914-323933 | None:intergenic | 30.0% |
| ! | GAAAGAAGAATAATGGAGAT+AGG | - | chr4.1:323754-323773 | None:intergenic | 30.0% |
| ! | GTTTTCATCTCATACTCATA+CGG | + | chr4.1:324006-324025 | MS.gene94555:intron | 30.0% |
| ! | TCCTTGTAGTAGTAATTTGT+TGG | + | chr4.1:323598-323617 | MS.gene94555:intron | 30.0% |
| ! | TGTAGTTGATACTGTTTAAG+TGG | - | chr4.1:324403-324422 | None:intergenic | 30.0% |
| ! | TTTTCCAAACTTTCTAAGCT+GGG | - | chr4.1:322906-322925 | None:intergenic | 30.0% |
| ! | TTTTTCCAAACTTTCTAAGC+TGG | - | chr4.1:322907-322926 | None:intergenic | 30.0% |
| !! | CCTTGTAGTAGTAATTTGTT+GGG | + | chr4.1:323599-323618 | MS.gene94555:intron | 30.0% |
| !! | GTTATAGTTGAAGTGTTGTT+AGG | - | chr4.1:322546-322565 | None:intergenic | 30.0% |
| AACATGGCTGATTATCCATT+CGG | + | chr4.1:322465-322484 | MS.gene94555:CDS | 35.0% | |
| AAGTTGAACACACCAAAAAC+TGG | + | chr4.1:323223-323242 | MS.gene94555:CDS | 35.0% | |
| ACGGAAGAAACTCAATAAAC+TGG | - | chr4.1:324580-324599 | None:intergenic | 35.0% | |
| AGAATCACAAAGCTAGAGAA+AGG | + | chr4.1:322957-322976 | MS.gene94555:CDS | 35.0% | |
| ATATCTCTGTCTCTTTGTGT+TGG | - | chr4.1:324532-324551 | None:intergenic | 35.0% | |
| CACAGTAACAACTAGACTTA+TGG | + | chr4.1:324289-324308 | MS.gene94555:CDS | 35.0% | |
| CAGTAAGTAATGCACAAACT+AGG | + | chr4.1:323527-323546 | MS.gene94555:intron | 35.0% | |
| CATAAGTCTAGTTGTTACTG+TGG | - | chr4.1:324291-324310 | None:intergenic | 35.0% | |
| CATGATCTCCATTCCTTATT+GGG | - | chr4.1:324469-324488 | None:intergenic | 35.0% | |
| CCCAACAAATTACTACTACA+AGG | - | chr4.1:323602-323621 | None:intergenic | 35.0% | |
| CCTTATTGGGAAAAGTTGAA+GGG | - | chr4.1:324456-324475 | None:intergenic | 35.0% | |
| CTGCTGTTATGAAATTTAGC+TGG | + | chr4.1:323668-323687 | MS.gene94555:intron | 35.0% | |
| CTGGAAGAATTGTATAGAAG+AGG | + | chr4.1:322839-322858 | MS.gene94555:CDS | 35.0% | |
| GCTCTTGAAAAGAAAGACTT+AGG | + | chr4.1:323025-323044 | MS.gene94555:CDS | 35.0% | |
| GGTGAATTGATTAAGGGAAA+AGG | - | chr4.1:323390-323409 | None:intergenic | 35.0% | |
| GTAATGCACAAACTAGGTAT+AGG | + | chr4.1:323533-323552 | MS.gene94555:intron | 35.0% | |
| GTAATTCTGCTTCATCGAAT+TGG | - | chr4.1:324151-324170 | None:intergenic | 35.0% | |
| TATAATCAGTGCTTAGTGAG+TGG | - | chr4.1:323452-323471 | None:intergenic | 35.0% | |
| TCCTTATTGGGAAAAGTTGA+AGG | - | chr4.1:324457-324476 | None:intergenic | 35.0% | |
| TGTTGTTAGGAGAAGTAGTA+GGG | - | chr4.1:322533-322552 | None:intergenic | 35.0% | |
| TTGTAGTTGTAGTATGTGTG+AGG | - | chr4.1:324359-324378 | None:intergenic | 35.0% | |
| ! | AAGTCAAGTCAGTAGCTTTT+GGG | + | chr4.1:323718-323737 | MS.gene94555:intron | 35.0% |
| ! | ATGAAATTTAGCTGGGCTTT+TGG | + | chr4.1:323676-323695 | MS.gene94555:intron | 35.0% |
| ! | CAACTTTTCCCAATAAGGAA+TGG | + | chr4.1:324458-324477 | MS.gene94555:CDS | 35.0% |
| ! | TGAAATTTAGCTGGGCTTTT+GGG | + | chr4.1:323677-323696 | MS.gene94555:intron | 35.0% |
| !! | CATGGGTTTTGATGAGTTTT+GGG | - | chr4.1:324316-324335 | None:intergenic | 35.0% |
| !! | TCATGGGTTTTGATGAGTTT+TGG | - | chr4.1:324317-324336 | None:intergenic | 35.0% |
| !! | TGTAGTAGAGGTGTTTAAGA+GGG | - | chr4.1:324243-324262 | None:intergenic | 35.0% |
| !! | TTGTAGTAGAGGTGTTTAAG+AGG | - | chr4.1:324244-324263 | None:intergenic | 35.0% |
| AATCATTGCCACCATGAATG+CGG | - | chr4.1:322581-322600 | None:intergenic | 40.0% | |
| CCAATAAGGAATGGAGATCA+TGG | + | chr4.1:324467-324486 | MS.gene94555:CDS | 40.0% | |
| CCATGATCTCCATTCCTTAT+TGG | - | chr4.1:324470-324489 | None:intergenic | 40.0% | |
| GAATTATAGACCTCTGCAAG+AGG | - | chr4.1:323282-323301 | None:intergenic | 40.0% | |
| TAATAATCCAGCAGCAGTTG+TGG | + | chr4.1:322775-322794 | MS.gene94555:CDS | 40.0% | |
| TCTAGTTGTTACTGTGGTTG+TGG | - | chr4.1:324285-324304 | None:intergenic | 40.0% | |
| ! | AAGGAAGGAATGCAGCTTTT+AGG | - | chr4.1:323638-323657 | None:intergenic | 40.0% |
| ! | ACTGGTACTGGAATTTGTAG+AGG | - | chr4.1:323253-323272 | None:intergenic | 40.0% |
| ! | CAAGTCAAGTCAGTAGCTTT+TGG | + | chr4.1:323717-323736 | MS.gene94555:intron | 40.0% |
| ! | CAGAAGCTGATTCCATTTGA+CGG | - | chr4.1:322994-323013 | None:intergenic | 40.0% |
| ! | CCCTTCAACTTTTCCCAATA+AGG | + | chr4.1:324453-324472 | MS.gene94555:CDS | 40.0% |
| ! | CTGGTACTGGAATTTGTAGA+GGG | - | chr4.1:323252-323271 | None:intergenic | 40.0% |
| ! | GAAATTTAGCTGGGCTTTTG+GGG | + | chr4.1:323678-323697 | MS.gene94555:intron | 40.0% |
| ! | GTGTTGTTAGGAGAAGTAGT+AGG | - | chr4.1:322534-322553 | None:intergenic | 40.0% |
| ! | TGTTGGATTTGTTCAGCAGA+AGG | - | chr4.1:322875-322894 | None:intergenic | 40.0% |
| !! | AGTACTCTAGAACAGATGGA+TGG | + | chr4.1:324123-324142 | MS.gene94555:intron | 40.0% |
| !! | GATCAGTACTCTAGAACAGA+TGG | + | chr4.1:324119-324138 | MS.gene94555:intron | 40.0% |
| !!! | AAGCAAGGGTTGTCTTGTTT+TGG | - | chr4.1:323800-323819 | None:intergenic | 40.0% |
| ACTGCCCAGCTTAGAAAGTT+TGG | + | chr4.1:322899-322918 | MS.gene94555:CDS | 45.0% | |
| AGTTGTTACTGTGGTTGTGG+TGG | - | chr4.1:324282-324301 | None:intergenic | 45.0% | |
| ATGGCTGATTATCCATTCGG+TGG | + | chr4.1:322468-322487 | MS.gene94555:CDS | 45.0% | |
| CCATGAATGCGGTTTAAGGA+AGG | - | chr4.1:322570-322589 | None:intergenic | 45.0% | |
| CCTTCCTTAAACCGCATTCA+TGG | + | chr4.1:322567-322586 | MS.gene94555:CDS | 45.0% | |
| CTGCATTCCTTCCTTTCTGT+CGG | + | chr4.1:323643-323662 | MS.gene94555:intron | 45.0% | |
| CTTAGTTTCCTTCCACCGAA+TGG | - | chr4.1:322483-322502 | None:intergenic | 45.0% | |
| GCTAGCTGTTGTTGTAGTAG+AGG | - | chr4.1:324255-324274 | None:intergenic | 45.0% | |
| GCTCTTAACTGTTCTGGTGT+TGG | - | chr4.1:322818-322837 | None:intergenic | 45.0% | |
| TAACTGCATCATATGCCACG+TGG | - | chr4.1:324204-324223 | None:intergenic | 45.0% | |
| TACTACAACAACAGCTAGCG+TGG | + | chr4.1:324256-324275 | MS.gene94555:CDS | 45.0% | |
| TAGGAGAAGTAGTAGGGACT+GGG | - | chr4.1:322527-322546 | None:intergenic | 45.0% | |
| TCCAGTGCTCTTAACTGTTC+TGG | - | chr4.1:322824-322843 | None:intergenic | 45.0% | |
| TCCTTAAACCGCATTCATGG+TGG | + | chr4.1:322570-322589 | MS.gene94555:CDS | 45.0% | |
| TGAAGGTGGTGAGTTCAACA+TGG | + | chr4.1:322449-322468 | MS.gene94555:CDS | 45.0% | |
| TGCATTCCTTCCTTTCTGTC+GGG | + | chr4.1:323644-323663 | MS.gene94555:intron | 45.0% | |
| TTAGGAGAAGTAGTAGGGAC+TGG | - | chr4.1:322528-322547 | None:intergenic | 45.0% | |
| TTATGGAAAGGAATGCCACG+TGG | + | chr4.1:324186-324205 | MS.gene94555:CDS | 45.0% | |
| ! | ACCAGAACAGTTAAGAGCAC+TGG | + | chr4.1:322820-322839 | MS.gene94555:CDS | 45.0% |
| ! | CATTCGGTGGAAGGAAACTA+AGG | + | chr4.1:322481-322500 | MS.gene94555:CDS | 45.0% |
| ! | CTGATTATCCATTCGGTGGA+AGG | + | chr4.1:322472-322491 | MS.gene94555:CDS | 45.0% |
| ! | TAAGCTGGGCAGTGATTTGT+TGG | - | chr4.1:322892-322911 | None:intergenic | 45.0% |
| ! | TGTAGAGGGTAGCCAGTTTT+TGG | - | chr4.1:323238-323257 | None:intergenic | 45.0% |
| ! | TTTTGTCAACAGGCGCAAGT+AGG | + | chr4.1:323190-323209 | MS.gene94555:intron | 45.0% |
| !! | AAGAGGAAGAGTACTGGTAC+TGG | - | chr4.1:323265-323284 | None:intergenic | 45.0% |
| !! | ATGGTGGGTTACAATGAAGG+TGG | + | chr4.1:322435-322454 | MS.gene94555:CDS | 45.0% |
| !! | GTAGAGGTGTTTAAGAGGGT+AGG | - | chr4.1:324239-324258 | None:intergenic | 45.0% |
| !! | TGGATGGTGGGTTACAATGA+AGG | + | chr4.1:322432-322451 | MS.gene94555:CDS | 45.0% |
| !!! | CAAGGGTTGTCTTGTTTTGG+TGG | - | chr4.1:323797-323816 | None:intergenic | 45.0% |
| !! | GTATTATATAATATAATATA+TGG | + | chr4.1:322637-322656 | MS.gene94555:intron | 5.0% |
| CAGCAGTTGTGGTGAGTTCA+AGG | + | chr4.1:322786-322805 | MS.gene94555:CDS | 50.0% | |
| CAGTACTCTTCCTCTTGCAG+AGG | + | chr4.1:323269-323288 | MS.gene94555:CDS | 50.0% | |
| CAGTTGTGGTGAGTTCAAGG+TGG | + | chr4.1:322789-322808 | MS.gene94555:CDS | 50.0% | |
| CATCACAATCTGCAGCAGCA+AGG | + | chr4.1:322615-322634 | MS.gene94555:CDS | 50.0% | |
| GCAAAAACGACGCCGTCAAA+TGG | + | chr4.1:322979-322998 | MS.gene94555:CDS | 50.0% | |
| GCATTCCTTCCTTTCTGTCG+GGG | + | chr4.1:323645-323664 | MS.gene94555:intron | 50.0% | |
| GCCACCATGAATGCGGTTTA+AGG | - | chr4.1:322574-322593 | None:intergenic | 50.0% | |
| ! | CTCTGCAAGAGGAAGAGTAC+TGG | - | chr4.1:323271-323290 | None:intergenic | 50.0% |
| GAACTCACCACAACTGCTGC+TGG | - | chr4.1:322785-322804 | None:intergenic | 55.0% | |
| GAAGTAGTAGGGACTGGGAC+TGG | - | chr4.1:322522-322541 | None:intergenic | 55.0% | |
| TAACAGCAGCCCCGACAGAA+AGG | - | chr4.1:323657-323676 | None:intergenic | 55.0% | |
| AGCAGCCCCGACAGAAAGGA+AGG | - | chr4.1:323653-323672 | None:intergenic | 60.0% | |
| !! | GGGACTGGTCTTGGCATGAG+AGG | - | chr4.1:322507-322526 | None:intergenic | 60.0% |
| !! | GTAGGGACTGGGACTGGTCT+TGG | - | chr4.1:322516-322535 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 322429 | 324610 | 322429 | ID=MS.gene94555 |
| chr4.1 | mRNA | 322429 | 324610 | 322429 | ID=MS.gene94555.t1;Parent=MS.gene94555 |
| chr4.1 | exon | 322429 | 322636 | 322429 | ID=MS.gene94555.t1.exon1;Parent=MS.gene94555.t1 |
| chr4.1 | CDS | 322429 | 322636 | 322429 | ID=cds.MS.gene94555.t1;Parent=MS.gene94555.t1 |
| chr4.1 | exon | 322747 | 323046 | 322747 | ID=MS.gene94555.t1.exon2;Parent=MS.gene94555.t1 |
| chr4.1 | CDS | 322747 | 323046 | 322747 | ID=cds.MS.gene94555.t1;Parent=MS.gene94555.t1 |
| chr4.1 | exon | 323202 | 323290 | 323202 | ID=MS.gene94555.t1.exon3;Parent=MS.gene94555.t1 |
| chr4.1 | CDS | 323202 | 323290 | 323202 | ID=cds.MS.gene94555.t1;Parent=MS.gene94555.t1 |
| chr4.1 | exon | 324125 | 324610 | 324125 | ID=MS.gene94555.t1.exon4;Parent=MS.gene94555.t1 |
| chr4.1 | CDS | 324125 | 324610 | 324125 | ID=cds.MS.gene94555.t1;Parent=MS.gene94555.t1 |
| Gene Sequence |
| Protein sequence |
