AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94805

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94805.t1 MTR_1g069215 96.751 277 9 0 1 277 1 277 0.0 558
MS.gene94805.t1 MTR_3g073070 89.531 277 27 1 1 277 1 275 2.42e-173 479
MS.gene94805.t1 MTR_3g073070 87.072 263 32 1 1 263 1 261 8.13e-166 461
MS.gene94805.t1 MTR_2g036690 47.761 67 33 1 200 266 103 167 2.57e-12 64.7
MS.gene94805.t1 MTR_2g005900 41.053 95 50 3 175 266 58 149 2.90e-12 65.1
MS.gene94805.t1 MTR_2g036690 47.761 67 33 1 200 266 103 167 4.94e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94805.t1 AT3G20970 83.654 208 34 0 68 275 72 279 7.03e-131 372
MS.gene94805.t1 AT1G51390 78.539 219 43 2 50 268 53 267 6.33e-126 359
MS.gene94805.t1 AT3G20970 84.106 151 24 0 68 218 72 222 1.12e-92 273
MS.gene94805.t1 AT5G49940 46.269 67 34 1 200 266 97 161 8.82e-13 65.9
MS.gene94805.t1 AT4G25910 47.761 67 33 1 200 266 96 160 1.06e-12 66.6
MS.gene94805.t1 AT5G49940 46.269 67 34 1 200 266 97 161 2.14e-12 65.5

Find 62 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTTTGCTGCTATTA+TGG 0.182790 1.4:+55668963 MS.gene94805:CDS
TGCGATGATCAAGGAACTTT+TGG 0.229879 1.4:+55669271 MS.gene94805:CDS
CTCCTTTGCCCGGTGGAAAA+TGG 0.230244 1.4:-55668631 None:intergenic
ATTATGGATTTCTACTCTTC+AGG 0.292022 1.4:+55668979 MS.gene94805:CDS
TTCATCGCGGAACGAGGATT+AGG 0.297871 1.4:-55668748 None:intergenic
CCATGACGCATCTTCCGATT+TGG 0.310465 1.4:-55668926 None:intergenic
CAGCAAAGATTTCAGGCTTA+AGG 0.326720 1.4:-55668954 None:intergenic
GTCTTTGGAAGCGGCAGCTT+GGG 0.330417 1.4:-55669022 None:intergenic
ATAATAGCAGCAAAGATTTC+AGG 0.354714 1.4:-55668961 None:intergenic
AACATAAGAGACTCTGGATT+TGG 0.370612 1.4:-55668682 None:intergenic
ATCGTGAATTGCTGTGTCTT+TGG 0.372631 1.4:-55669037 None:intergenic
GATTTGGAGTGGACTGTGTT+TGG 0.376256 1.4:-55668666 None:intergenic
TCATCGCGGAACGAGGATTA+GGG 0.388776 1.4:-55668747 None:intergenic
CAAAGGTGTGGAACAAGAAT+TGG 0.398435 1.4:+55670250 MS.gene94805:CDS
TTCAGAGTCACCGAAGAACT+TGG 0.410747 1.4:-55669738 None:intergenic
TCTTCGGTGACTCTGAAATC+AGG 0.425848 1.4:+55669744 MS.gene94805:CDS
TGTGATTAGTCTCTGATTTG+AGG 0.428418 1.4:-55668498 None:intergenic
GTGATTAGTCTCTGATTTGA+GGG 0.430671 1.4:-55668497 None:intergenic
TGTCTTTGGAAGCGGCAGCT+TGG 0.456320 1.4:-55669023 None:intergenic
GGTGGGGACATTGTGTATTG+TGG 0.468819 1.4:+55669326 MS.gene94805:CDS
TAGTGGCTGCCCAAGTTCTT+CGG 0.469327 1.4:+55669728 MS.gene94805:CDS
AGATGGAAATGGTGAGGCAG+AGG 0.494910 1.4:-55668608 None:intergenic
GGAACGAGGATTAGGGAAAT+CGG 0.495781 1.4:-55668740 None:intergenic
CAAGAAGAAGCAGCTTTAAG+TGG 0.496309 1.4:+55670281 MS.gene94805:CDS
AGCAGCTTTAAGTGGACAAA+CGG 0.505572 1.4:+55670289 MS.gene94805:CDS
TCGTATCCGACCAACTGTAC+AGG 0.532621 1.4:+55669298 MS.gene94805:CDS
CAAATCGGAAGATGCGTCAT+GGG 0.534660 1.4:+55668927 MS.gene94805:CDS
GGATGAAACATAAGAGACTC+TGG 0.539372 1.4:-55668688 None:intergenic
ACATCCATGACAGGTTTACC+AGG 0.541119 1.4:-55668709 None:intergenic
TGAAACAGTTGCGATGATCA+AGG 0.541980 1.4:+55669262 MS.gene94805:CDS
AATTGCTGTGTCTTTGGAAG+CGG 0.547638 1.4:-55669031 None:intergenic
CCAAATCGGAAGATGCGTCA+TGG 0.548834 1.4:+55668926 MS.gene94805:CDS
TTGCTGCATTTACAGGTCAA+AGG 0.551548 1.4:+55670233 MS.gene94805:intron
CGACCAACTGTACAGGATGA+TGG 0.562611 1.4:+55669305 MS.gene94805:CDS
GTGGAAAATGGAGATGGAAA+TGG 0.563081 1.4:-55668619 None:intergenic
AAACATACTCCTCCTTTGCC+CGG 0.564888 1.4:-55668641 None:intergenic
TCAGAGTCACCGAAGAACTT+GGG 0.566646 1.4:-55669737 None:intergenic
GCATTGCGGTTGTAGTTGCA+AGG 0.571191 1.4:-55668574 None:intergenic
GAGTCTCTTATGTTTCATCC+TGG 0.574002 1.4:+55668691 MS.gene94805:CDS
TGCCCGGTGGAAAATGGAGA+TGG 0.578393 1.4:-55668625 None:intergenic
CCACCATCATCCTGTACAGT+TGG 0.579401 1.4:-55669308 None:intergenic
AACTGTACAGGATGATGGTG+GGG 0.584854 1.4:+55669310 MS.gene94805:CDS
GGTAAACCTGTCATGGATGT+TGG 0.587174 1.4:+55668712 MS.gene94805:CDS
TCATCCTGGTAAACCTGTCA+TGG 0.592000 1.4:+55668705 MS.gene94805:CDS
GGAGAATTCATCGCGGAACG+AGG 0.593137 1.4:-55668754 None:intergenic
CAACTGTACAGGATGATGGT+GGG 0.594080 1.4:+55669309 MS.gene94805:CDS
ATCGTCAAACTCAAAATGCA+AGG 0.595778 1.4:+55669699 MS.gene94805:CDS
CCAACTGTACAGGATGATGG+TGG 0.609164 1.4:+55669308 MS.gene94805:CDS
GCGCTACCAACATCCATGAC+AGG 0.609183 1.4:-55668718 None:intergenic
CATCATCCTGTACAGTTGGT+CGG 0.612141 1.4:-55669304 None:intergenic
GCTTGGGAGTCTAGAAAGAG+TGG 0.628813 1.4:-55669006 None:intergenic
GCATTTACAGGTCAAAGGTG+TGG 0.632082 1.4:+55670238 MS.gene94805:intron
AAGAGACTCTGGATTTGGAG+TGG 0.639473 1.4:-55668677 None:intergenic
TAGTTGCAAGGTTGAAACGA+TGG 0.642224 1.4:-55668562 None:intergenic
AAAATGCAAGGAGCATGTAG+TGG 0.643660 1.4:+55669711 MS.gene94805:CDS
CATACTCCTCCTTTGCCCGG+TGG 0.656092 1.4:-55668638 None:intergenic
TGTGAAGGATGACGGTGGTG+AGG 0.663047 1.4:+55668425 None:intergenic
TTAGGAAAACGATTACGACT+AGG 0.664261 1.4:+55668463 MS.gene94805:CDS
AAATGGAGATGGAAATGGTG+AGG 0.703537 1.4:-55668614 None:intergenic
GCTGATGCATTATGTACCTG+AGG 0.715793 1.4:+55669779 MS.gene94805:CDS
AGCAAGAGGAGAATTCATCG+CGG 0.788482 1.4:-55668761 None:intergenic
TGAACTGTGAAGGATGACGG+TGG 0.822277 1.4:+55668420 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACTTAAATTTCATAAA+AGG + chr1.4:55669119-55669138 MS.gene94805:intron 10.0%
!!! TTTTATGAAATTTAAGTAAA+AGG - chr1.4:55669120-55669139 None:intergenic 10.0%
!! ATATAAAAAACAAGTAAAAG+AGG - chr1.4:55669654-55669673 None:intergenic 15.0%
!!! GAACTTTATCTTATTATTTT+AGG + chr1.4:55669477-55669496 MS.gene94805:intron 15.0%
!!! TAATTTTATTTCAAGGAATT+TGG + chr1.4:55669094-55669113 MS.gene94805:intron 15.0%
!!! TCATCAATTATTTTTTAACA+CGG - chr1.4:55669507-55669526 None:intergenic 15.0%
!! AAATAGAAAACCTAATTCAA+TGG - chr1.4:55670018-55670037 None:intergenic 20.0%
!! AGCATATCTTATAAGTTAAT+TGG - chr1.4:55669986-55670005 None:intergenic 20.0%
!! ATATAAATGGAAACAACAAA+TGG - chr1.4:55669841-55669860 None:intergenic 20.0%
!! GTTGAACAATTCATATAAAT+TGG - chr1.4:55670179-55670198 None:intergenic 20.0%
!! TAAAAAAACAATCAGAAAAC+AGG - chr1.4:55668854-55668873 None:intergenic 20.0%
!! TCAATCACCATAAATATAAA+TGG - chr1.4:55669854-55669873 None:intergenic 20.0%
!!! AAATCAATTTTTGCTATTGA+TGG + chr1.4:55668784-55668803 MS.gene94805:CDS 20.0%
!!! ATTGCTGTAATTTTATTTCA+AGG + chr1.4:55669087-55669106 MS.gene94805:intron 20.0%
!!! ATTGTTTTTTTAATTGTTGC+AGG + chr1.4:55668862-55668881 MS.gene94805:intron 20.0%
!!! GTTGTTTCCATTTATATTTA+TGG + chr1.4:55669844-55669863 MS.gene94805:intron 20.0%
!!! TTATTTAAAGCAGCATTAAA+AGG + chr1.4:55670146-55670165 MS.gene94805:intron 20.0%
! AATAAAAGAAATGAAAGGAG+TGG - chr1.4:55668827-55668846 None:intergenic 25.0%
! ACATATTACAAGGATAAACT+TGG + chr1.4:55669957-55669976 MS.gene94805:intron 25.0%
! AGAGTATAGATTATTCATTG+AGG - chr1.4:55669407-55669426 None:intergenic 25.0%
! ATGCTAACAAATCATACTAA+AGG + chr1.4:55669543-55669562 MS.gene94805:intron 25.0%
! GCACAAATAAAAGAAATGAA+AGG - chr1.4:55668832-55668851 None:intergenic 25.0%
! TTCTATTTATCTTACAGGAT+TGG + chr1.4:55670030-55670049 MS.gene94805:intron 25.0%
!! AGGTTTTCTATTTATCTTAC+AGG + chr1.4:55670025-55670044 MS.gene94805:intron 25.0%
!! GGAAATTTGCTCATTTAATT+TGG - chr1.4:55669578-55669597 None:intergenic 25.0%
AAATAACAAGGGGAAACTTA+CGG - chr1.4:55669359-55669378 None:intergenic 30.0%
AATCAACTTAAGAATGCCAT+AGG - chr1.4:55669931-55669950 None:intergenic 30.0%
ACATTGAAACCCAAATAACA+AGG - chr1.4:55669371-55669390 None:intergenic 30.0%
ATAATAGCAGCAAAGATTTC+AGG - chr1.4:55668964-55668983 None:intergenic 30.0%
ATTATGGATTTCTACTCTTC+AGG + chr1.4:55668979-55668998 MS.gene94805:CDS 30.0%
ATTGAAACCCAAATAACAAG+GGG - chr1.4:55669369-55669388 None:intergenic 30.0%
CATTGAAACCCAAATAACAA+GGG - chr1.4:55669370-55669389 None:intergenic 30.0%
TACAAATGCTTCATTACAGA+AGG - chr1.4:55669903-55669922 None:intergenic 30.0%
TAGTTGTCATCCATTGAATT+AGG + chr1.4:55670005-55670024 MS.gene94805:intron 30.0%
TGAAATCTTTGCTGCTATTA+TGG + chr1.4:55668963-55668982 MS.gene94805:CDS 30.0%
TTCAAGATCTCAAAACTGAA+TGG + chr1.4:55669208-55669227 MS.gene94805:intron 30.0%
! GCAAAAATTGATTTAGCAAG+AGG - chr1.4:55668778-55668797 None:intergenic 30.0%
! TTTTGTCACTGTTACCAAAT+CGG + chr1.4:55668912-55668931 MS.gene94805:CDS 30.0%
!! GATTTTGAGGACATATTACA+AGG + chr1.4:55669947-55669966 MS.gene94805:intron 30.0%
!! GTTTGTTTTCTCTAGAGATA+CGG + chr1.4:55669674-55669693 MS.gene94805:intron 30.0%
!! TAAGTTTCCCCTTGTTATTT+GGG + chr1.4:55669359-55669378 MS.gene94805:intron 30.0%
!! TTTGTTTTCTCTAGAGATAC+GGG + chr1.4:55669675-55669694 MS.gene94805:intron 30.0%
!!! ATTCAGTTTTGAGATCTTGA+AGG - chr1.4:55669209-55669228 None:intergenic 30.0%
!!! GCATTCTTAAGTTGATTTTG+AGG + chr1.4:55669934-55669953 MS.gene94805:intron 30.0%
AACATAAGAGACTCTGGATT+TGG - chr1.4:55668685-55668704 None:intergenic 35.0%
AAGCATTTGTACCTTTCCTA+TGG + chr1.4:55669912-55669931 MS.gene94805:intron 35.0%
ACTTAAGAATGCCATAGGAA+AGG - chr1.4:55669926-55669945 None:intergenic 35.0%
ATCGTCAAACTCAAAATGCA+AGG + chr1.4:55669699-55669718 MS.gene94805:CDS 35.0%
CGACAACAATGATATTGTCT+TGG - chr1.4:55669599-55669618 None:intergenic 35.0%
TAGTATGCACAGTGACAAAT+AGG - chr1.4:55670090-55670109 None:intergenic 35.0%
TTAGGAAAACGATTACGACT+AGG + chr1.4:55668463-55668482 MS.gene94805:CDS 35.0%
! ACAAATTGTTTTCGCTGTCT+GGG + chr1.4:55668532-55668551 MS.gene94805:CDS 35.0%
! GTCGTAATCGTTTTCCTAAT+CGG - chr1.4:55668462-55668481 None:intergenic 35.0%
! TACAAATTGTTTTCGCTGTC+TGG + chr1.4:55668531-55668550 MS.gene94805:CDS 35.0%
!! AGGAAGAGAAAAAAGCATTG+CGG - chr1.4:55668591-55668610 None:intergenic 35.0%
!! GTAAGTTTCCCCTTGTTATT+TGG + chr1.4:55669358-55669377 MS.gene94805:intron 35.0%
!! GTGATTAGTCTCTGATTTGA+GGG - chr1.4:55668500-55668519 None:intergenic 35.0%
!! TAATGCAAACTTGTTACCTC+AGG - chr1.4:55669798-55669817 None:intergenic 35.0%
!! TGTGATTAGTCTCTGATTTG+AGG - chr1.4:55668501-55668520 None:intergenic 35.0%
!! TTGTTTTCTCTAGAGATACG+GGG + chr1.4:55669676-55669695 MS.gene94805:intron 35.0%
AAATGAAAGGAGTGGAGAGA+GGG - chr1.4:55668819-55668838 None:intergenic 40.0%
AAATGGAGATGGAAATGGTG+AGG - chr1.4:55668617-55668636 None:intergenic 40.0%
AGATAAAGTTCAACCCACCT+AGG - chr1.4:55669468-55669487 None:intergenic 40.0%
ATCGTGAATTGCTGTGTCTT+TGG - chr1.4:55669040-55669059 None:intergenic 40.0%
ATGCTTACCTGTTTGCATAC+AGG + chr1.4:55669232-55669251 MS.gene94805:intron 40.0%
CAGCAAAGATTTCAGGCTTA+AGG - chr1.4:55668957-55668976 None:intergenic 40.0%
GAATCATCCTGTATGCAAAC+AGG - chr1.4:55669242-55669261 None:intergenic 40.0%
GAGTCTCTTATGTTTCATCC+TGG + chr1.4:55668691-55668710 MS.gene94805:CDS 40.0%
GCAAAGGTAGAATGGAACTT+TGG - chr1.4:55669446-55669465 None:intergenic 40.0%
GGATGAAACATAAGAGACTC+TGG - chr1.4:55668691-55668710 None:intergenic 40.0%
GTAAATGCAGCAAGCAACAT+TGG - chr1.4:55670226-55670245 None:intergenic 40.0%
GTGGAAAATGGAGATGGAAA+TGG - chr1.4:55668622-55668641 None:intergenic 40.0%
TAGTTGCAAGGTTGAAACGA+TGG - chr1.4:55668565-55668584 None:intergenic 40.0%
TGAAACAGTTGCGATGATCA+AGG + chr1.4:55669262-55669281 MS.gene94805:CDS 40.0%
TTGCTGCATTTACAGGTCAA+AGG + chr1.4:55670233-55670252 MS.gene94805:intron 40.0%
! AAAATGCAAGGAGCATGTAG+TGG + chr1.4:55669711-55669730 MS.gene94805:CDS 40.0%
! AATTGCTGTGTCTTTGGAAG+CGG - chr1.4:55669034-55669053 None:intergenic 40.0%
! ATGTTGCTTGCTGCATTTAC+AGG + chr1.4:55670226-55670245 MS.gene94805:intron 40.0%
! CAAAGGTGTGGAACAAGAAT+TGG + chr1.4:55670250-55670269 MS.gene94805:CDS 40.0%
! GGAATCACTCGTGTTTTCTT+TGG + chr1.4:55668883-55668902 MS.gene94805:intron 40.0%
! TGCGATGATCAAGGAACTTT+TGG + chr1.4:55669271-55669290 MS.gene94805:CDS 40.0%
! TTTCCATCTCCATTTTCCAC+CGG + chr1.4:55668622-55668641 MS.gene94805:CDS 40.0%
!! AGCAGCTTTAAGTGGACAAA+CGG + chr1.4:55670289-55670308 MS.gene94805:CDS 40.0%
!! CAAGAAGAAGCAGCTTTAAG+TGG + chr1.4:55670281-55670300 MS.gene94805:CDS 40.0%
AAACATACTCCTCCTTTGCC+CGG - chr1.4:55668644-55668663 None:intergenic 45.0%
AAGAGACTCTGGATTTGGAG+TGG - chr1.4:55668680-55668699 None:intergenic 45.0%
AATGAAAGGAGTGGAGAGAG+GGG - chr1.4:55668818-55668837 None:intergenic 45.0%
AATTCACGATCCAAGTGCTC+GGG + chr1.4:55669156-55669175 MS.gene94805:intron 45.0%
ACATCCATGACAGGTTTACC+AGG - chr1.4:55668712-55668731 None:intergenic 45.0%
AGCAAGAGGAGAATTCATCG+CGG - chr1.4:55668764-55668783 None:intergenic 45.0%
CAAATCGGAAGATGCGTCAT+GGG + chr1.4:55668927-55668946 MS.gene94805:CDS 45.0%
CAATTCACGATCCAAGTGCT+CGG + chr1.4:55669155-55669174 MS.gene94805:intron 45.0%
CATCATCCTGTACAGTTGGT+CGG - chr1.4:55669307-55669326 None:intergenic 45.0%
CATTCTACCTTTGCCTAGGT+GGG + chr1.4:55669452-55669471 MS.gene94805:intron 45.0%
GAAATGAAAGGAGTGGAGAG+AGG - chr1.4:55668820-55668839 None:intergenic 45.0%
GCATTTACAGGTCAAAGGTG+TGG + chr1.4:55670238-55670257 MS.gene94805:intron 45.0%
GCTGATGCATTATGTACCTG+AGG + chr1.4:55669779-55669798 MS.gene94805:CDS 45.0%
GGAACGAGGATTAGGGAAAT+CGG - chr1.4:55668743-55668762 None:intergenic 45.0%
GGTAAACCTGTCATGGATGT+TGG + chr1.4:55668712-55668731 MS.gene94805:CDS 45.0%
GTTCCATTCTACCTTTGCCT+AGG + chr1.4:55669448-55669467 MS.gene94805:intron 45.0%
TCAGAGTCACCGAAGAACTT+GGG - chr1.4:55669740-55669759 None:intergenic 45.0%
TCATCCTGGTAAACCTGTCA+TGG + chr1.4:55668705-55668724 MS.gene94805:CDS 45.0%
TTCAGAGTCACCGAAGAACT+TGG - chr1.4:55669741-55669760 None:intergenic 45.0%
! AACTGTACAGGATGATGGTG+GGG + chr1.4:55669310-55669329 MS.gene94805:CDS 45.0%
! AGGCGTACTGTTTTCCGATT+AGG + chr1.4:55668445-55668464 MS.gene94805:CDS 45.0%
! CAACTGTACAGGATGATGGT+GGG + chr1.4:55669309-55669328 MS.gene94805:CDS 45.0%
! CGGGAGTATGAGATTTGTCT+AGG + chr1.4:55669175-55669194 MS.gene94805:intron 45.0%
! TTCCATCTCCATTTTCCACC+GGG + chr1.4:55668623-55668642 MS.gene94805:CDS 45.0%
!! GATTTGGAGTGGACTGTGTT+TGG - chr1.4:55668669-55668688 None:intergenic 45.0%
!! TCTTCGGTGACTCTGAAATC+AGG + chr1.4:55669744-55669763 MS.gene94805:CDS 45.0%
AGATGGAAATGGTGAGGCAG+AGG - chr1.4:55668611-55668630 None:intergenic 50.0%
AGTTCAACCCACCTAGGCAA+AGG - chr1.4:55669462-55669481 None:intergenic 50.0%
ATCTCATACTCCCGAGCACT+TGG - chr1.4:55669169-55669188 None:intergenic 50.0%
ATGAAAGGAGTGGAGAGAGG+GGG - chr1.4:55668817-55668836 None:intergenic 50.0%
CCAAATCGGAAGATGCGTCA+TGG + chr1.4:55668926-55668945 MS.gene94805:CDS 50.0%
CCACCATCATCCTGTACAGT+TGG - chr1.4:55669311-55669330 None:intergenic 50.0%
CCACCTAGGCAAAGGTAGAA+TGG - chr1.4:55669454-55669473 None:intergenic 50.0%
CCATGACGCATCTTCCGATT+TGG - chr1.4:55668929-55668948 None:intergenic 50.0%
CCATTCTACCTTTGCCTAGG+TGG + chr1.4:55669451-55669470 MS.gene94805:intron 50.0%
CGACCAACTGTACAGGATGA+TGG + chr1.4:55669305-55669324 MS.gene94805:CDS 50.0%
CGAGCACTTGGATCGTGAAT+TGG - chr1.4:55669157-55669176 None:intergenic 50.0%
GCATTGCGGTTGTAGTTGCA+AGG - chr1.4:55668577-55668596 None:intergenic 50.0%
GCTTGGGAGTCTAGAAAGAG+TGG - chr1.4:55669009-55669028 None:intergenic 50.0%
GGTGGGGACATTGTGTATTG+TGG + chr1.4:55669326-55669345 MS.gene94805:CDS 50.0%
TAGTGGCTGCCCAAGTTCTT+CGG + chr1.4:55669728-55669747 MS.gene94805:CDS 50.0%
TCATCGCGGAACGAGGATTA+GGG - chr1.4:55668750-55668769 None:intergenic 50.0%
TCGTATCCGACCAACTGTAC+AGG + chr1.4:55669298-55669317 MS.gene94805:CDS 50.0%
TTCATCGCGGAACGAGGATT+AGG - chr1.4:55668751-55668770 None:intergenic 50.0%
! CCAACTGTACAGGATGATGG+TGG + chr1.4:55669308-55669327 MS.gene94805:CDS 50.0%
CTCCTTTGCCCGGTGGAAAA+TGG - chr1.4:55668634-55668653 None:intergenic 55.0%
GCGCTACCAACATCCATGAC+AGG - chr1.4:55668721-55668740 None:intergenic 55.0%
GGAGAATTCATCGCGGAACG+AGG - chr1.4:55668757-55668776 None:intergenic 55.0%
TGAAAGGAGTGGAGAGAGGG+GGG - chr1.4:55668816-55668835 None:intergenic 55.0%
TGCCCGGTGGAAAATGGAGA+TGG - chr1.4:55668628-55668647 None:intergenic 55.0%
! CATTTTCCACCGGGCAAAGG+AGG + chr1.4:55668632-55668651 MS.gene94805:CDS 55.0%
! CTCCATTTTCCACCGGGCAA+AGG + chr1.4:55668629-55668648 MS.gene94805:CDS 55.0%
! GTCTTTGGAAGCGGCAGCTT+GGG - chr1.4:55669025-55669044 None:intergenic 55.0%
! TGTCTTTGGAAGCGGCAGCT+TGG - chr1.4:55669026-55669045 None:intergenic 55.0%
CATACTCCTCCTTTGCCCGG+TGG - chr1.4:55668641-55668660 None:intergenic 60.0%
GAAAGGAGTGGAGAGAGGGG+GGG - chr1.4:55668815-55668834 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 55668433 55670316 55668433 ID=MS.gene94805
chr1.4 mRNA 55668433 55670316 55668433 ID=MS.gene94805.t1;Parent=MS.gene94805
chr1.4 exon 55668433 55668805 55668433 ID=MS.gene94805.t1.exon1;Parent=MS.gene94805.t1
chr1.4 CDS 55668433 55668805 55668433 ID=cds.MS.gene94805.t1;Parent=MS.gene94805.t1
chr1.4 exon 55668884 55669059 55668884 ID=MS.gene94805.t1.exon2;Parent=MS.gene94805.t1
chr1.4 CDS 55668884 55669059 55668884 ID=cds.MS.gene94805.t1;Parent=MS.gene94805.t1
chr1.4 exon 55669254 55669357 55669254 ID=MS.gene94805.t1.exon3;Parent=MS.gene94805.t1
chr1.4 CDS 55669254 55669357 55669254 ID=cds.MS.gene94805.t1;Parent=MS.gene94805.t1
chr1.4 exon 55669689 55669800 55669689 ID=MS.gene94805.t1.exon4;Parent=MS.gene94805.t1
chr1.4 CDS 55669689 55669800 55669689 ID=cds.MS.gene94805.t1;Parent=MS.gene94805.t1
chr1.4 exon 55670248 55670316 55670248 ID=MS.gene94805.t1.exon5;Parent=MS.gene94805.t1
chr1.4 CDS 55670248 55670316 55670248 ID=cds.MS.gene94805.t1;Parent=MS.gene94805.t1
Gene Sequence

>MS.gene94805

ATGACGGTGGTGAGGCGTACTGTTTTCCGATTAGGAAAACGATTACGACTAGGACTCTTCAATTCCCTCAAATCAGAGACTAATCACAATGATCTAAATACAAATTGTTTTCGCTGTCTGGGTGCAACGCCATCGTTTCAACCTTGCAACTACAACCGCAATGCTTTTTTCTCTTCCTCTGCCTCACCATTTCCATCTCCATTTTCCACCGGGCAAAGGAGGAGTATGTTTATCCAAACACAGTCCACTCCAAATCCAGAGTCTCTTATGTTTCATCCTGGTAAACCTGTCATGGATGTTGGTAGCGCCGATTTCCCTAATCCTCGTTCCGCGATGAATTCTCCTCTTGCTAAATCAATTTTTGCTATTGATGGTACTGCCCCCCCTCTCTCCACTCCTTTCATTTCTTTTATTTGTGCCTGTTTTCTGATTGTTTTTTTAATTGTTGCAGGAATCACTCGTGTTTTCTTTGGATCTGATTTTGTCACTGTTACCAAATCGGAAGATGCGTCATGGGAATTCCTTAAGCCTGAAATCTTTGCTGCTATTATGGATTTCTACTCTTCAGGTGAACCACTCTTTCTAGACTCCCAAGCTGCCGCTTCCAAAGACACAGCAATTCACGATGTAAGTTTTTCTCATTTCTATGCTGATATTGCTGTAATTTTATTTCAAGGAATTTGGCCTTTTACTTAAATTTCATAAAAGGTCAAATTTATTACCAATTCACGATCCAAGTGCTCGGGAGTATGAGATTTGTCTAGGTTTTGACACCTTCAAGATCTCAAAACTGAATGGTATGCTTACCTGTTTGCATACAGGATGATTCTGAAACAGTTGCGATGATCAAGGAACTTTTGGAGACTCGTATCCGACCAACTGTACAGGATGATGGTGGGGACATTGTGTATTGTGGTTTTGATCCGTAAGTTTCCCCTTGTTATTTGGGTTTCAATGTTACATGCACTTAACCTCAATGAATAATCTATACTCTTAACAAAATAGAAGTTCCAAAGTTCCATTCTACCTTTGCCTAGGTGGGTTGAACTTTATCTTATTATTTTAGGATCTCCGTGTTAAAAAATAATTGATGATATCTCATACAACAACATGCTAACAAATCATACTAAAGGTGAAATTAACCAAATTAAATGAGCAAATTTCCAAGACAATATCATTGTTGTCGTTGACAATGCTAATGTTTGACATTATAGAATTCCTCTTTTACTTGTTTTTTATATGTTTGTTTTCTCTAGAGATACGGGGATCGTCAAACTCAAAATGCAAGGAGCATGTAGTGGCTGCCCAAGTTCTTCGGTGACTCTGAAATCAGGCATTGAGAATATGCTGATGCATTATGTACCTGAGGTAACAAGTTTGCATTATAATTTGTGATGAAACTGATCCATTTGTTGTTTCCATTTATATTTATGGTGATTGAATTGATTGAAATCTTCAACTTATCGTCCTTCTGTAATGAAGCATTTGTACCTTTCCTATGGCATTCTTAAGTTGATTTTGAGGACATATTACAAGGATAAACTTGGAGACCAATTAACTTATAAGATATGCTAGTTGTCATCCATTGAATTAGGTTTTCTATTTATCTTACAGGATTGGTTGCATGCAAGTTGTCGAATTTATATTAAACAGACCTATTTGTCACTGTGCATACTAGAAAGTATAGACAAAGCTGTATTGATTATTGAGTTTTTATTTAAAGCAGCATTAAAAGGCTGAGTTCCAATTTATATGAATTGTTCAACTATATAATATTGAGAAACAATCTTCCAATGTTGCTTGCTGCATTTACAGGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGCAAGAAGAAGCAGCTTTAAGTGGACAAACGGAGTAG
Protein sequence

>MS.gene94805.t1

MTVVRRTVFRLGKRLRLGLFNSLKSETNHNDLNTNCFRCLGATPSFQPCNYNRNAFFSSSASPFPSPFSTGQRRSMFIQTQSTPNPESLMFHPGKPVMDVGSADFPNPRSAMNSPLAKSIFAIDGITRVFFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGEPLFLDSQAAASKDTAIHDDDSETVAMIKELLETRIRPTVQDDGGDIVYCGFDPDTGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDAEQEEAALSGQTE