Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94853.t1 | XP_013452335.1 | 94.5 | 308 | 13 | 1 | 1 | 308 | 51 | 354 | 2.90E-156 | 561.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94853.t1 | Q8LG95 | 70.5 | 220 | 65 | 0 | 21 | 240 | 24 | 243 | 5.0e-88 | 325.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94853.t1 | A0A072UBE9 | 94.5 | 308 | 13 | 1 | 1 | 308 | 51 | 354 | 2.1e-156 | 561.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene94853 | 0.800563 | 1.36E-48 | -1.69E-46 |
| MS.gene050670 | MS.gene94853 | 0.805686 | 1.18E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene94853 | 0.807957 | 3.92E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene94853 | 0.806169 | 9.37E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene94853 | 0.814834 | 1.26E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene94853 | 0.821078 | 4.89E-53 | -1.69E-46 |
| MS.gene055116 | MS.gene94853 | 0.803393 | 3.56E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene94853 | 0.803427 | 3.50E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene94853 | 0.817067 | 4.00E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene94853 | 0.803181 | 3.94E-49 | -1.69E-46 |
| MS.gene057396 | MS.gene94853 | 0.817282 | 3.58E-52 | -1.69E-46 |
| MS.gene057448 | MS.gene94853 | 0.804554 | 2.04E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene94853 | 0.800711 | 1.27E-48 | -1.69E-46 |
| MS.gene058928 | MS.gene94853 | 0.806814 | 6.85E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene94853 | 0.815987 | 6.98E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene94853 | 0.81337 | 2.65E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene94853 | 0.812367 | 4.39E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94853.t1 | MTR_6g053090 | 94.481 | 308 | 13 | 1 | 1 | 308 | 51 | 354 | 0.0 | 574 |
| MS.gene94853.t1 | MTR_3g024400 | 46.269 | 201 | 107 | 1 | 41 | 241 | 75 | 274 | 8.35e-56 | 182 |
| MS.gene94853.t1 | MTR_5g012120 | 39.744 | 156 | 93 | 1 | 66 | 220 | 4 | 159 | 4.44e-36 | 129 |
| MS.gene94853.t1 | MTR_5g012120 | 37.952 | 166 | 100 | 2 | 58 | 220 | 71 | 236 | 1.13e-35 | 130 |
| MS.gene94853.t1 | MTR_3g024400 | 45.455 | 132 | 71 | 1 | 110 | 241 | 96 | 226 | 8.80e-33 | 121 |
| MS.gene94853.t1 | MTR_6g052450 | 75.714 | 70 | 10 | 1 | 1 | 70 | 1 | 63 | 2.04e-23 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94853.t1 | AT4G21190 | 71.963 | 214 | 60 | 0 | 27 | 240 | 30 | 243 | 1.69e-115 | 335 |
| MS.gene94853.t1 | AT4G18975 | 47.208 | 197 | 103 | 1 | 42 | 238 | 58 | 253 | 2.94e-59 | 191 |
| MS.gene94853.t1 | AT4G18975 | 47.208 | 197 | 103 | 1 | 42 | 238 | 85 | 280 | 5.95e-59 | 191 |
| MS.gene94853.t1 | AT4G18975 | 47.208 | 197 | 103 | 1 | 42 | 238 | 85 | 280 | 5.95e-59 | 191 |
| MS.gene94853.t1 | AT4G18975 | 47.208 | 197 | 103 | 1 | 42 | 238 | 85 | 280 | 5.95e-59 | 191 |
| MS.gene94853.t1 | AT1G04590 | 38.462 | 182 | 111 | 1 | 40 | 220 | 131 | 312 | 8.38e-37 | 135 |
| MS.gene94853.t1 | AT1G04590 | 38.378 | 185 | 110 | 2 | 40 | 220 | 131 | 315 | 3.09e-35 | 131 |
Find 54 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGATTCATCTGAGTTTA+TGG | 0.136082 | 6.1:+29281731 | MS.gene94853:CDS |
| ACGTATCTATCGACTTTATT+AGG | 0.199277 | 6.1:-29281573 | None:intergenic |
| TCTCGTTATACTTCTAAATT+TGG | 0.208592 | 6.1:-29281756 | None:intergenic |
| TCCTATAATTACAGTGAAAA+AGG | 0.241597 | 6.1:+29279569 | MS.gene94853:CDS |
| AGAAGAGACTTCAGAGTTAA+TGG | 0.256931 | 6.1:+29281650 | MS.gene94853:CDS |
| AATGTCAAAGAAGAAGTTTA+TGG | 0.291907 | 6.1:+29279510 | MS.gene94853:CDS |
| TCCTCTCTTAAGCCTGGATT+TGG | 0.327589 | 6.1:-29281618 | None:intergenic |
| AAGGAAAGCGTGTAAGAATC+AGG | 0.347993 | 6.1:+29281538 | MS.gene94853:CDS |
| TGAAACTATAGGTAACAAAA+TGG | 0.351629 | 6.1:+29279830 | MS.gene94853:intron |
| GACCAAGATATCCTCGAGTT+TGG | 0.361562 | 6.1:+29278097 | MS.gene94853:CDS |
| TGAATCATCTGAAATTTGTT+TGG | 0.368446 | 6.1:-29281718 | None:intergenic |
| TTGACGAAGCAGAAGAGCTT+TGG | 0.377250 | 6.1:+29279929 | MS.gene94853:CDS |
| TATTTGATATGTTAATTTGT+TGG | 0.381277 | 6.1:-29277951 | None:intergenic |
| TAGTAGTTCTGTTGTCTCAA+TGG | 0.409178 | 6.1:+29281422 | MS.gene94853:CDS |
| TTCCAAACTCGAGGATATCT+TGG | 0.417267 | 6.1:-29278099 | None:intergenic |
| CTATATTCCCATTGCGGTGG+TGG | 0.430282 | 6.1:-29281507 | None:intergenic |
| AAAATATCCACCACCGCAAT+GGG | 0.433687 | 6.1:+29281500 | MS.gene94853:CDS |
| AAGGTATTTGCTGCTGCAAA+AGG | 0.436480 | 6.1:+29278069 | MS.gene94853:intron |
| CTCTAGAATACGAGAAAGAA+TGG | 0.450096 | 6.1:+29279601 | MS.gene94853:CDS |
| ACTCGAGGATATCTTGGTCT+TGG | 0.456302 | 6.1:-29278093 | None:intergenic |
| CTATCTTCCTCTCTTAAGCC+TGG | 0.457380 | 6.1:-29281624 | None:intergenic |
| CTCTTGATACCTATGTCGCT+TGG | 0.459035 | 6.1:+29279535 | MS.gene94853:CDS |
| GGATGATGAACAATTCGAAC+AGG | 0.474763 | 6.1:+29281671 | MS.gene94853:CDS |
| CATGTAGGTATTTGCAGACA+TGG | 0.476328 | 6.1:+29281380 | MS.gene94853:intron |
| AGTTCTGTTGTCTCAATGGT+TGG | 0.480356 | 6.1:+29281426 | MS.gene94853:CDS |
| GATATGTTAATTTGTTGGTA+TGG | 0.485734 | 6.1:-29277946 | None:intergenic |
| CTTCAAAGAGCTAGGTATGA+TGG | 0.487411 | 6.1:+29281455 | MS.gene94853:CDS |
| ATATCTATCTACTGTAAAAG+AGG | 0.491255 | 6.1:+29280009 | MS.gene94853:CDS |
| CTTGCATGATAAGATGTTTG+AGG | 0.498325 | 6.1:+29280032 | MS.gene94853:CDS |
| TCTTGATACCTATGTCGCTT+GGG | 0.501458 | 6.1:+29279536 | MS.gene94853:CDS |
| GGATGCCGATTTAAAATGCA+TGG | 0.521969 | 6.1:+29281692 | MS.gene94853:CDS |
| ATTGAGACAACAGAACTACT+AGG | 0.527919 | 6.1:-29281420 | None:intergenic |
| AACAAAATGGATGCTAAGCA+AGG | 0.531400 | 6.1:+29279843 | MS.gene94853:CDS |
| GACAATGTTCAACCAAATCC+AGG | 0.541175 | 6.1:+29281606 | MS.gene94853:CDS |
| GCTCTTCTGCTTCGTCAACT+CGG | 0.545541 | 6.1:-29279924 | None:intergenic |
| TTCTAGTTCCCAAGCGACAT+AGG | 0.558781 | 6.1:-29279544 | None:intergenic |
| AATACGAGAAAGAATGGAAG+CGG | 0.559112 | 6.1:+29279607 | MS.gene94853:CDS |
| AAGGGTCAAGGAAAGACAAT+GGG | 0.563191 | 6.1:+29279862 | MS.gene94853:CDS |
| AGAATGGAAGCGGATAATAC+AGG | 0.564642 | 6.1:+29279617 | MS.gene94853:CDS |
| TTATTAGTCTTCCAAACTCG+AGG | 0.571818 | 6.1:-29278108 | None:intergenic |
| GGAAATGTCTTCAAAGAGCT+AGG | 0.573832 | 6.1:+29281447 | MS.gene94853:CDS |
| CGTGTAAGAATCAGGGTGCA+AGG | 0.595586 | 6.1:+29281546 | MS.gene94853:CDS |
| TGGGAATATAGATACATCAA+AGG | 0.602911 | 6.1:+29281519 | MS.gene94853:CDS |
| ACTACTTAATGCTTTAGCAG+AGG | 0.604140 | 6.1:+29279897 | MS.gene94853:CDS |
| ATGTATCTATATTCCCATTG+CGG | 0.604796 | 6.1:-29281513 | None:intergenic |
| AGGAAAGCGTGTAAGAATCA+GGG | 0.610217 | 6.1:+29281539 | MS.gene94853:CDS |
| TATGGTTTAGCAATAAGTAG+AGG | 0.629980 | 6.1:-29277928 | None:intergenic |
| TGGATGCTAAGCAAGGGTCA+AGG | 0.634274 | 6.1:+29279850 | MS.gene94853:CDS |
| CAAGGGTCAAGGAAAGACAA+TGG | 0.634494 | 6.1:+29279861 | MS.gene94853:CDS |
| TATCTATATTCCCATTGCGG+TGG | 0.638033 | 6.1:-29281510 | None:intergenic |
| ACAAAATGGATGCTAAGCAA+GGG | 0.649924 | 6.1:+29279844 | MS.gene94853:CDS |
| ACCAAATCCAGGCTTAAGAG+AGG | 0.654831 | 6.1:+29281617 | MS.gene94853:CDS |
| AAAGCTATTAATGCAGTACA+CGG | 0.681216 | 6.1:+29279954 | MS.gene94853:CDS |
| GTAGGTATTTGCAGACATGG+AGG | 0.706718 | 6.1:+29281383 | MS.gene94853:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATATTCTGTAAATA+TGG | + | chr6.1:29280256-29280275 | MS.gene94853:intron | 10.0% |
| !! | ATTTACATGTTTACTATATT+CGG | - | chr6.1:29280914-29280933 | None:intergenic | 15.0% |
| !!! | TAATTTTCTCAAATTATTAG+CGG | - | chr6.1:29278339-29278358 | None:intergenic | 15.0% |
| !!! | TATTTGATATGTTAATTTGT+TGG | - | chr6.1:29277954-29277973 | None:intergenic | 15.0% |
| !! | AAAAATCAAATAAAGTGGTA+TGG | + | chr6.1:29280741-29280760 | MS.gene94853:intron | 20.0% |
| !! | AAAGTTATTGGAGTAAAAAT+AGG | + | chr6.1:29280212-29280231 | MS.gene94853:intron | 20.0% |
| !! | ACAAACAAATGTTGTTAATA+TGG | + | chr6.1:29281324-29281343 | MS.gene94853:intron | 20.0% |
| !! | ATGAACATAAAAAAATCACA+AGG | - | chr6.1:29279670-29279689 | None:intergenic | 20.0% |
| !! | GGAAGACTAATAAAAAAATT+GGG | + | chr6.1:29278118-29278137 | MS.gene94853:CDS | 20.0% |
| !! | TGGAAGACTAATAAAAAAAT+TGG | + | chr6.1:29278117-29278136 | MS.gene94853:CDS | 20.0% |
| !! | TTGGATAAAAGAAAAGTTAT+TGG | + | chr6.1:29280200-29280219 | MS.gene94853:intron | 20.0% |
| !! | TTGTATATTCAAAGTTCAAA+TGG | + | chr6.1:29280167-29280186 | MS.gene94853:intron | 20.0% |
| !!! | AAATTACTTTCTGAAACTAT+AGG | + | chr6.1:29279819-29279838 | MS.gene94853:intron | 20.0% |
| !!! | TTTTTTCAGTATATTTCCAA+TGG | - | chr6.1:29280392-29280411 | None:intergenic | 20.0% |
| ! | AAATAACTGAATGAAAACTG+AGG | + | chr6.1:29280464-29280483 | MS.gene94853:intron | 25.0% |
| ! | AAATTGAGTAAATATTGAGC+CGG | - | chr6.1:29281358-29281377 | None:intergenic | 25.0% |
| ! | AATGTCAAAGAAGAAGTTTA+TGG | + | chr6.1:29279510-29279529 | MS.gene94853:CDS | 25.0% |
| ! | ACAAATGTTGTTAATATGGA+TGG | + | chr6.1:29281328-29281347 | MS.gene94853:intron | 25.0% |
| ! | ACTGAAAAAAAAAATGAGCA+AGG | + | chr6.1:29280402-29280421 | MS.gene94853:intron | 25.0% |
| ! | ATATCTATCTACTGTAAAAG+AGG | + | chr6.1:29280009-29280028 | MS.gene94853:CDS | 25.0% |
| ! | ATTCCTTTGATTAAAAGAGT+CGG | + | chr6.1:29278704-29278723 | MS.gene94853:intron | 25.0% |
| ! | ATTTACTCAATTTCTCATGT+AGG | + | chr6.1:29281365-29281384 | MS.gene94853:intron | 25.0% |
| ! | CTGAAAAAAAAAATGAGCAA+GGG | + | chr6.1:29280403-29280422 | MS.gene94853:intron | 25.0% |
| ! | GGCAAAAAAATCAAATAAAG+TGG | + | chr6.1:29280736-29280755 | MS.gene94853:intron | 25.0% |
| ! | TAGTATTTAACAATGTCAGA+TGG | + | chr6.1:29278837-29278856 | MS.gene94853:intron | 25.0% |
| ! | TCCTATAATTACAGTGAAAA+AGG | + | chr6.1:29279569-29279588 | MS.gene94853:CDS | 25.0% |
| ! | TCTCTTAAGAAGTAAACATA+CGG | + | chr6.1:29281107-29281126 | MS.gene94853:intron | 25.0% |
| ! | TGAAACTATAGGTAACAAAA+TGG | + | chr6.1:29279830-29279849 | MS.gene94853:intron | 25.0% |
| ! | TGGGTTAAAGTCATAAAAAT+TGG | + | chr6.1:29278967-29278986 | MS.gene94853:intron | 25.0% |
| ! | TTCAAATGGCAAATATACAT+TGG | + | chr6.1:29280181-29280200 | MS.gene94853:intron | 25.0% |
| !! | ATTTTATCAAAGAATCTACG+TGG | - | chr6.1:29279988-29280007 | None:intergenic | 25.0% |
| !! | TGAATCATCTGAAATTTGTT+TGG | - | chr6.1:29281721-29281740 | None:intergenic | 25.0% |
| !!! | AAAAATTGGGACTATTTCTA+AGG | + | chr6.1:29278131-29278150 | MS.gene94853:CDS | 25.0% |
| !!! | ACCTTTTTCACTGTAATTAT+AGG | - | chr6.1:29279573-29279592 | None:intergenic | 25.0% |
| !!! | ATTGAATAATGCCATTTTCT+CGG | - | chr6.1:29278630-29278649 | None:intergenic | 25.0% |
| !!! | CCTTAGTTCTATAGTTTTTA+GGG | + | chr6.1:29278002-29278021 | MS.gene94853:intron | 25.0% |
| !!! | GATACATTGACTTCTTTATA+TGG | - | chr6.1:29278874-29278893 | None:intergenic | 25.0% |
| !!! | GATATGTTAATTTGTTGGTA+TGG | - | chr6.1:29277949-29277968 | None:intergenic | 25.0% |
| !!! | TCCTTAGTTCTATAGTTTTT+AGG | + | chr6.1:29278001-29278020 | MS.gene94853:intron | 25.0% |
| !!! | TTTCATCAATTAGCTTGTAT+TGG | - | chr6.1:29280295-29280314 | None:intergenic | 25.0% |
| AAAAGACTTGTCAAATACTC+AGG | + | chr6.1:29280527-29280546 | MS.gene94853:intron | 30.0% | |
| AAAATAAAACACCATGGTGA+CGG | - | chr6.1:29279132-29279151 | None:intergenic | 30.0% | |
| AAAGAAGTCAATGTATCCTT+TGG | + | chr6.1:29278877-29278896 | MS.gene94853:intron | 30.0% | |
| AAAGCTATTAATGCAGTACA+CGG | + | chr6.1:29279954-29279973 | MS.gene94853:CDS | 30.0% | |
| AACCAAAATCATAGAGTAAG+AGG | + | chr6.1:29280436-29280455 | MS.gene94853:intron | 30.0% | |
| AACCAAAGCATAAACTACTA+AGG | - | chr6.1:29278744-29278763 | None:intergenic | 30.0% | |
| AACCTTAGTAGTTTATGCTT+TGG | + | chr6.1:29278739-29278758 | MS.gene94853:intron | 30.0% | |
| AATTTCAAAAAGCTACCACA+TGG | + | chr6.1:29279255-29279274 | MS.gene94853:intron | 30.0% | |
| AGATGATTCATCTGAGTTTA+TGG | + | chr6.1:29281731-29281750 | MS.gene94853:CDS | 30.0% | |
| AGTTCATAGACAAATAGTGA+AGG | - | chr6.1:29278922-29278941 | None:intergenic | 30.0% | |
| ATCAAATAAAGTGGTATGGA+TGG | + | chr6.1:29280745-29280764 | MS.gene94853:intron | 30.0% | |
| ATGAAACAAAGATGTCCATT+CGG | + | chr6.1:29280309-29280328 | MS.gene94853:intron | 30.0% | |
| ATGAAGCATAGATACAAACA+CGG | + | chr6.1:29278272-29278291 | MS.gene94853:intron | 30.0% | |
| ATGTAAGTATTATGTCGTGT+TGG | + | chr6.1:29278648-29278667 | MS.gene94853:intron | 30.0% | |
| ATGTATCTATATTCCCATTG+CGG | - | chr6.1:29281516-29281535 | None:intergenic | 30.0% | |
| CAGACTAAATTGAACACATA+GGG | - | chr6.1:29280958-29280977 | None:intergenic | 30.0% | |
| CCCTAAAAACTATAGAACTA+AGG | - | chr6.1:29278005-29278024 | None:intergenic | 30.0% | |
| CTGAATTAAGATACATTACC+GGG | + | chr6.1:29279032-29279051 | MS.gene94853:intron | 30.0% | |
| CTTTCACAAATTTCTCATAC+CGG | - | chr6.1:29279106-29279125 | None:intergenic | 30.0% | |
| GACTTTATACAGAAAACCTT+AGG | + | chr6.1:29279412-29279431 | MS.gene94853:intron | 30.0% | |
| GATGATTTATGTTCCTTCTT+TGG | + | chr6.1:29279767-29279786 | MS.gene94853:intron | 30.0% | |
| GCTGAATTAAGATACATTAC+CGG | + | chr6.1:29279031-29279050 | MS.gene94853:intron | 30.0% | |
| GTTACGGAAAAGTTACTTAT+TGG | + | chr6.1:29279009-29279028 | MS.gene94853:intron | 30.0% | |
| GTTCATAGACAAATAGTGAA+GGG | - | chr6.1:29278921-29278940 | None:intergenic | 30.0% | |
| GTTTCTTACTAGTTGTGATA+TGG | + | chr6.1:29278761-29278780 | MS.gene94853:intron | 30.0% | |
| TAAGAGAGAAAATCATCAAC+AGG | - | chr6.1:29281094-29281113 | None:intergenic | 30.0% | |
| TAGAGTCGTTATTTATAGAC+AGG | + | chr6.1:29280808-29280827 | MS.gene94853:intron | 30.0% | |
| TATGGTTTAGCAATAAGTAG+AGG | - | chr6.1:29277931-29277950 | None:intergenic | 30.0% | |
| TCAGACTAAATTGAACACAT+AGG | - | chr6.1:29280959-29280978 | None:intergenic | 30.0% | |
| TGGGAATATAGATACATCAA+AGG | + | chr6.1:29281519-29281538 | MS.gene94853:CDS | 30.0% | |
| TGTTAATATGGATGGAATTC+CGG | + | chr6.1:29281336-29281355 | MS.gene94853:intron | 30.0% | |
| TTGAATGTGATCACATTTGT+CGG | + | chr6.1:29278484-29278503 | MS.gene94853:intron | 30.0% | |
| ! | AGAACTAACACTTTTATCGA+AGG | - | chr6.1:29278545-29278564 | None:intergenic | 30.0% |
| ! | GGTTTCCATGCATTTTAAAT+CGG | - | chr6.1:29281700-29281719 | None:intergenic | 30.0% |
| ! | TATTTTATGGCGGTTCAAAA+TGG | + | chr6.1:29279146-29279165 | MS.gene94853:intron | 30.0% |
| !! | ACGTATCTATCGACTTTATT+AGG | - | chr6.1:29281576-29281595 | None:intergenic | 30.0% |
| !! | TTTCGTTGATAGTTAGGTTA+CGG | + | chr6.1:29278993-29279012 | MS.gene94853:intron | 30.0% |
| !!! | CACCATGGTGTTTTATTTTA+TGG | + | chr6.1:29279133-29279152 | MS.gene94853:intron | 30.0% |
| !!! | CATGGTGTTTTATTTTATGG+CGG | + | chr6.1:29279136-29279155 | MS.gene94853:intron | 30.0% |
| !!! | TGGTAGCTTTTTGAAATTTG+TGG | - | chr6.1:29279253-29279272 | None:intergenic | 30.0% |
| !!! | TGTCTATGAACTAGTCTTTT+CGG | + | chr6.1:29278930-29278949 | MS.gene94853:intron | 30.0% |
| AAAAAAAATGAGCAAGGGAG+AGG | + | chr6.1:29280408-29280427 | MS.gene94853:intron | 35.0% | |
| AACAAAATGGATGCTAAGCA+AGG | + | chr6.1:29279843-29279862 | MS.gene94853:CDS | 35.0% | |
| AATACGAGAAAGAATGGAAG+CGG | + | chr6.1:29279607-29279626 | MS.gene94853:CDS | 35.0% | |
| AATGAAAACTGAGGCAGAAA+AGG | + | chr6.1:29280473-29280492 | MS.gene94853:intron | 35.0% | |
| ACAAAATGGATGCTAAGCAA+GGG | + | chr6.1:29279844-29279863 | MS.gene94853:CDS | 35.0% | |
| ACAATCCAGTCCTATATTCT+AGG | - | chr6.1:29281146-29281165 | None:intergenic | 35.0% | |
| ACTACTTAATGCTTTAGCAG+AGG | + | chr6.1:29279897-29279916 | MS.gene94853:CDS | 35.0% | |
| AGAAGAGACTTCAGAGTTAA+TGG | + | chr6.1:29281650-29281669 | MS.gene94853:CDS | 35.0% | |
| ATCTCTTGCAGTCAGTTATT+TGG | - | chr6.1:29281254-29281273 | None:intergenic | 35.0% | |
| ATGAAAACTGAGGCAGAAAA+GGG | + | chr6.1:29280474-29280493 | MS.gene94853:intron | 35.0% | |
| ATTACCGGGTTGTCAAATAT+CGG | + | chr6.1:29279046-29279065 | MS.gene94853:intron | 35.0% | |
| ATTGAGACAACAGAACTACT+AGG | - | chr6.1:29281423-29281442 | None:intergenic | 35.0% | |
| CGCCATAAAATAAAACACCA+TGG | - | chr6.1:29279138-29279157 | None:intergenic | 35.0% | |
| CTGTTAGTTATCCGAGAAAA+TGG | + | chr6.1:29278616-29278635 | MS.gene94853:intron | 35.0% | |
| CTTGCATGATAAGATGTTTG+AGG | + | chr6.1:29280032-29280051 | MS.gene94853:CDS | 35.0% | |
| GAGATAACTACAGTTATGTG+AGG | + | chr6.1:29281269-29281288 | MS.gene94853:intron | 35.0% | |
| GGTATGGATGGAATCTATAA+GGG | + | chr6.1:29280757-29280776 | MS.gene94853:intron | 35.0% | |
| GTAAGACTACTGTATTCCAT+TGG | + | chr6.1:29280373-29280392 | MS.gene94853:intron | 35.0% | |
| GTTATTTATAGACAGGCCTA+GGG | + | chr6.1:29280815-29280834 | MS.gene94853:intron | 35.0% | |
| TCTCAAATTATTAGCGGTGT+CGG | - | chr6.1:29278333-29278352 | None:intergenic | 35.0% | |
| TCTCTTGCAGTCAGTTATTT+GGG | - | chr6.1:29281253-29281272 | None:intergenic | 35.0% | |
| TCTTAATGGTGTTCAGCTAA+GGG | - | chr6.1:29280348-29280367 | None:intergenic | 35.0% | |
| TGGTATGGATGGAATCTATA+AGG | + | chr6.1:29280756-29280775 | MS.gene94853:intron | 35.0% | |
| TTATCGCTGTCTATGAATCA+CGG | - | chr6.1:29278443-29278462 | None:intergenic | 35.0% | |
| TTATTTATAGACAGGCCTAG+GGG | + | chr6.1:29280816-29280835 | MS.gene94853:intron | 35.0% | |
| TTCTTAATGGTGTTCAGCTA+AGG | - | chr6.1:29280349-29280368 | None:intergenic | 35.0% | |
| ! | ATGGAATACAGTAGTCTTAC+TGG | - | chr6.1:29280373-29280392 | None:intergenic | 35.0% |
| ! | CTCCTCTTACTCTATGATTT+TGG | - | chr6.1:29280441-29280460 | None:intergenic | 35.0% |
| ! | CTTTTCAGTATAGATGCAAG+TGG | + | chr6.1:29280715-29280734 | MS.gene94853:intron | 35.0% |
| ! | TAGTAGTTCTGTTGTCTCAA+TGG | + | chr6.1:29281422-29281441 | MS.gene94853:CDS | 35.0% |
| ! | TTCGGTTAGACTCTTTTCAT+GGG | + | chr6.1:29278948-29278967 | MS.gene94853:intron | 35.0% |
| ! | TTTCGGTTAGACTCTTTTCA+TGG | + | chr6.1:29278947-29278966 | MS.gene94853:intron | 35.0% |
| !! | CTCTAGAATACGAGAAAGAA+TGG | + | chr6.1:29279601-29279620 | MS.gene94853:CDS | 35.0% |
| !! | TAGTCTTACTGGCTTCTTAA+TGG | - | chr6.1:29280362-29280381 | None:intergenic | 35.0% |
| !! | TTATTAGTCTTCCAAACTCG+AGG | - | chr6.1:29278111-29278130 | None:intergenic | 35.0% |
| !! | TTTGATCAGTAGCTTTAGTG+TGG | + | chr6.1:29281054-29281073 | MS.gene94853:intron | 35.0% |
| !!! | GTGGTTGATATTTTGACAAC+CGG | + | chr6.1:29279084-29279103 | MS.gene94853:intron | 35.0% |
| !!! | TGGTGTTTTCGTTGATAGTT+AGG | + | chr6.1:29278987-29279006 | MS.gene94853:intron | 35.0% |
| AAAAATATCCACCACCGCAA+TGG | + | chr6.1:29281499-29281518 | MS.gene94853:CDS | 40.0% | |
| AAAATATCCACCACCGCAAT+GGG | + | chr6.1:29281500-29281519 | MS.gene94853:CDS | 40.0% | |
| AAACGAATATAGCGAATGCG+AGG | - | chr6.1:29278187-29278206 | None:intergenic | 40.0% | |
| AAGGAGAGGATAAGGGTTTA+GGG | + | chr6.1:29281019-29281038 | MS.gene94853:intron | 40.0% | |
| AAGGGTCAAGGAAAGACAAT+GGG | + | chr6.1:29279862-29279881 | MS.gene94853:CDS | 40.0% | |
| AAGTCAATGTATCCTTTGGC+GGG | + | chr6.1:29278881-29278900 | MS.gene94853:intron | 40.0% | |
| AATATAGGACTGGATTGTGC+GGG | + | chr6.1:29281148-29281167 | MS.gene94853:intron | 40.0% | |
| AGAATGGAAGCGGATAATAC+AGG | + | chr6.1:29279617-29279636 | MS.gene94853:CDS | 40.0% | |
| AGTTCTGTTGTCTCAATGGT+TGG | + | chr6.1:29281426-29281445 | MS.gene94853:CDS | 40.0% | |
| CATGTAGGTATTTGCAGACA+TGG | + | chr6.1:29281380-29281399 | MS.gene94853:intron | 40.0% | |
| CCAGAAATGCAAATCATCCA+AGG | - | chr6.1:29279447-29279466 | None:intergenic | 40.0% | |
| CGATTACAAATGGCAGAACA+AGG | - | chr6.1:29279190-29279209 | None:intergenic | 40.0% | |
| CGTTATTTATAGACAGGCCT+AGG | + | chr6.1:29280814-29280833 | MS.gene94853:intron | 40.0% | |
| CTAACAATTAAGTCACCCCT+AGG | - | chr6.1:29280834-29280853 | None:intergenic | 40.0% | |
| CTGTCTATGAATCACGGATT+AGG | - | chr6.1:29278437-29278456 | None:intergenic | 40.0% | |
| CTTCAAAGAGCTAGGTATGA+TGG | + | chr6.1:29281455-29281474 | MS.gene94853:CDS | 40.0% | |
| GAAGTCAATGTATCCTTTGG+CGG | + | chr6.1:29278880-29278899 | MS.gene94853:intron | 40.0% | |
| GAATATAGGACTGGATTGTG+CGG | + | chr6.1:29281147-29281166 | MS.gene94853:intron | 40.0% | |
| GACAATGTTCAACCAAATCC+AGG | + | chr6.1:29281606-29281625 | MS.gene94853:CDS | 40.0% | |
| GATAGGATATGAGCGAACAA+AGG | + | chr6.1:29280496-29280515 | MS.gene94853:intron | 40.0% | |
| GGAAATGTCTTCAAAGAGCT+AGG | + | chr6.1:29281447-29281466 | MS.gene94853:CDS | 40.0% | |
| GGATGATGAACAATTCGAAC+AGG | + | chr6.1:29281671-29281690 | MS.gene94853:CDS | 40.0% | |
| GTCAATGTCACTGTCGTATT+TGG | - | chr6.1:29278236-29278255 | None:intergenic | 40.0% | |
| GTTCCTTCTTTGGATAGCTT+CGG | + | chr6.1:29279777-29279796 | MS.gene94853:intron | 40.0% | |
| TATCTATATTCCCATTGCGG+TGG | - | chr6.1:29281513-29281532 | None:intergenic | 40.0% | |
| TCCAAGGAAAAATCAGCCTA+AGG | - | chr6.1:29279431-29279450 | None:intergenic | 40.0% | |
| TCCATATCCAGGAAATCTTC+AGG | - | chr6.1:29280556-29280575 | None:intergenic | 40.0% | |
| TCCTGAAGATTTCCTGGATA+TGG | + | chr6.1:29280552-29280571 | MS.gene94853:intron | 40.0% | |
| TTCCAAACTCGAGGATATCT+TGG | - | chr6.1:29278102-29278121 | None:intergenic | 40.0% | |
| TTCCTTCTTTGGATAGCTTC+GGG | + | chr6.1:29279778-29279797 | MS.gene94853:intron | 40.0% | |
| TTGGTCCTAGAATATAGGAC+TGG | + | chr6.1:29281138-29281157 | MS.gene94853:intron | 40.0% | |
| TTTATGGCGGTTCAAAATGG+TGG | + | chr6.1:29279149-29279168 | MS.gene94853:intron | 40.0% | |
| ! | AAGGAAAGCGTGTAAGAATC+AGG | + | chr6.1:29281538-29281557 | MS.gene94853:CDS | 40.0% |
| ! | AAGGTATTTGCTGCTGCAAA+AGG | + | chr6.1:29278069-29278088 | MS.gene94853:intron | 40.0% |
| ! | ACAGCGTTGTCGATTACAAA+TGG | - | chr6.1:29279200-29279219 | None:intergenic | 40.0% |
| ! | AGGAAAGCGTGTAAGAATCA+GGG | + | chr6.1:29281539-29281558 | MS.gene94853:CDS | 40.0% |
| ! | CCTTGGATGATTTGCATTTC+TGG | + | chr6.1:29279444-29279463 | MS.gene94853:intron | 40.0% |
| ! | GTATTATGTCGTGTTGGTGT+AGG | + | chr6.1:29278654-29278673 | MS.gene94853:intron | 40.0% |
| ! | TCTTGATACCTATGTCGCTT+GGG | + | chr6.1:29279536-29279555 | MS.gene94853:CDS | 40.0% |
| ! | TTCAGCTAAGGGCTATTTCA+GGG | - | chr6.1:29280337-29280356 | None:intergenic | 40.0% |
| !! | ACCTTAGGCTGATTTTTCCT+TGG | + | chr6.1:29279427-29279446 | MS.gene94853:intron | 40.0% |
| !! | AGTCCTATATTCTAGGACCA+AGG | - | chr6.1:29281139-29281158 | None:intergenic | 40.0% |
| !! | CTATATTCTAGGACCAAGGA+CGG | - | chr6.1:29281135-29281154 | None:intergenic | 40.0% |
| !! | GGATGCCGATTTAAAATGCA+TGG | + | chr6.1:29281692-29281711 | MS.gene94853:CDS | 40.0% |
| !!! | CTCTTAGTGGCTAGTCTTTT+GGG | + | chr6.1:29279353-29279372 | MS.gene94853:intron | 40.0% |
| !!! | GCACCGACTCTTTTAATCAA+AGG | - | chr6.1:29278710-29278729 | None:intergenic | 40.0% |
| AACTGAGGCAGAAAAGGGAT+AGG | + | chr6.1:29280479-29280498 | MS.gene94853:intron | 45.0% | |
| ACCAAATCCAGGCTTAAGAG+AGG | + | chr6.1:29281617-29281636 | MS.gene94853:CDS | 45.0% | |
| ACTCGAGGATATCTTGGTCT+TGG | - | chr6.1:29278096-29278115 | None:intergenic | 45.0% | |
| AGATTTCCTGGATATGGAGC+AGG | + | chr6.1:29280558-29280577 | MS.gene94853:intron | 45.0% | |
| ATGGCCGATATTTGACAACC+CGG | - | chr6.1:29279053-29279072 | None:intergenic | 45.0% | |
| CAAGGAGAGGATAAGGGTTT+AGG | + | chr6.1:29281018-29281037 | MS.gene94853:intron | 45.0% | |
| CAAGGGTCAAGGAAAGACAA+TGG | + | chr6.1:29279861-29279880 | MS.gene94853:CDS | 45.0% | |
| CAATGTTATGAGTTCCACGC+CGG | + | chr6.1:29279330-29279349 | MS.gene94853:intron | 45.0% | |
| CAGGATTCCTGAAGATTTCC+TGG | + | chr6.1:29280546-29280565 | MS.gene94853:intron | 45.0% | |
| CCAAACCAAGGAGAGGATAA+GGG | + | chr6.1:29281012-29281031 | MS.gene94853:intron | 45.0% | |
| CGTCCTTGGTCCTAGAATAT+AGG | + | chr6.1:29281133-29281152 | MS.gene94853:intron | 45.0% | |
| CTAAACCCTTATCCTCTCCT+TGG | - | chr6.1:29281020-29281039 | None:intergenic | 45.0% | |
| CTATCTTCCTCTCTTAAGCC+TGG | - | chr6.1:29281627-29281646 | None:intergenic | 45.0% | |
| CTCTTGATACCTATGTCGCT+TGG | + | chr6.1:29279535-29279554 | MS.gene94853:CDS | 45.0% | |
| CTCTTTCAACAGTGACCATG+TGG | - | chr6.1:29279273-29279292 | None:intergenic | 45.0% | |
| GACCAAGATATCCTCGAGTT+TGG | + | chr6.1:29278097-29278116 | MS.gene94853:CDS | 45.0% | |
| GGACTTCCTCGAGAAAAACT+CGG | - | chr6.1:29280994-29281013 | None:intergenic | 45.0% | |
| GTAGGTATTTGCAGACATGG+AGG | + | chr6.1:29281383-29281402 | MS.gene94853:intron | 45.0% | |
| GTCTGTATCTGTGTTGTGTC+TGG | - | chr6.1:29278301-29278320 | None:intergenic | 45.0% | |
| TCCAAACCAAGGAGAGGATA+AGG | + | chr6.1:29281011-29281030 | MS.gene94853:intron | 45.0% | |
| TCCTCTCTTAAGCCTGGATT+TGG | - | chr6.1:29281621-29281640 | None:intergenic | 45.0% | |
| TCCTTCTTTGGATAGCTTCG+GGG | + | chr6.1:29279779-29279798 | MS.gene94853:intron | 45.0% | |
| TTGACGAAGCAGAAGAGCTT+TGG | + | chr6.1:29279929-29279948 | MS.gene94853:CDS | 45.0% | |
| TTGTCAAATATCGGCCATGC+TGG | + | chr6.1:29279055-29279074 | MS.gene94853:intron | 45.0% | |
| ! | AAAGACTAGCCACTAAGAGC+CGG | - | chr6.1:29279352-29279371 | None:intergenic | 45.0% |
| ! | CAAACACCGAGTTTTTCTCG+AGG | + | chr6.1:29280985-29281004 | MS.gene94853:intron | 45.0% |
| ! | GTTCAGCTAAGGGCTATTTC+AGG | - | chr6.1:29280338-29280357 | None:intergenic | 45.0% |
| ! | TCAGCTAAGGGCTATTTCAG+GGG | - | chr6.1:29280336-29280355 | None:intergenic | 45.0% |
| !! | CACATTTGTCGGTGTTGTGT+TGG | + | chr6.1:29278495-29278514 | MS.gene94853:intron | 45.0% |
| !! | TTCTAGTTCCCAAGCGACAT+AGG | - | chr6.1:29279547-29279566 | None:intergenic | 45.0% |
| !! | TTGGGTTGGACTCTCTTCAT+CGG | + | chr6.1:29279371-29279390 | MS.gene94853:intron | 45.0% |
| !!! | GCTCTTAGTGGCTAGTCTTT+TGG | + | chr6.1:29279352-29279371 | MS.gene94853:intron | 45.0% |
| !!! | TAGTGGCTAGTCTTTTGGGT+TGG | + | chr6.1:29279357-29279376 | MS.gene94853:intron | 45.0% |
| !!! | ATTTTTATGATTTTATTATA+AGG | + | chr6.1:29278050-29278069 | MS.gene94853:intron | 5.0% |
| AGGAAGTCCAAACCAAGGAG+AGG | + | chr6.1:29281005-29281024 | MS.gene94853:intron | 50.0% | |
| CCCTTATCCTCTCCTTGGTT+TGG | - | chr6.1:29281015-29281034 | None:intergenic | 50.0% | |
| CGTGTAAGAATCAGGGTGCA+AGG | + | chr6.1:29281546-29281565 | MS.gene94853:CDS | 50.0% | |
| CTATATTCCCATTGCGGTGG+TGG | - | chr6.1:29281510-29281529 | None:intergenic | 50.0% | |
| GAGAGGATAAGGGTTTAGGG+AGG | + | chr6.1:29281022-29281041 | MS.gene94853:intron | 50.0% | |
| GCTCTTCTGCTTCGTCAACT+CGG | - | chr6.1:29279927-29279946 | None:intergenic | 50.0% | |
| TAAACATACGGCTCCGTCCT+TGG | + | chr6.1:29281119-29281138 | MS.gene94853:intron | 50.0% | |
| TACAACTGAAGAGTCGCGCT+CGG | - | chr6.1:29280655-29280674 | None:intergenic | 50.0% | |
| TCTCGAGGAAGTCCAAACCA+AGG | + | chr6.1:29281000-29281019 | MS.gene94853:intron | 50.0% | |
| TGAAAGAGTGAAAGCCGTCG+TGG | + | chr6.1:29279285-29279304 | MS.gene94853:intron | 50.0% | |
| TGGATGCTAAGCAAGGGTCA+AGG | + | chr6.1:29279850-29279869 | MS.gene94853:CDS | 50.0% | |
| TGTGAAAGATGCCGTCACCA+TGG | + | chr6.1:29279118-29279137 | MS.gene94853:intron | 50.0% | |
| ! | TTTAGAGCCGACATCCACGA+CGG | - | chr6.1:29279302-29279321 | None:intergenic | 50.0% |
| !! | GATGTCGGCTCTAAAAGAGG+TGG | + | chr6.1:29279307-29279326 | MS.gene94853:intron | 50.0% |
| !! | GTGGATGTCGGCTCTAAAAG+AGG | + | chr6.1:29279304-29279323 | MS.gene94853:intron | 50.0% |
| ATATCGGCCATGCTGGATCG+CGG | + | chr6.1:29279062-29279081 | MS.gene94853:intron | 55.0% | |
| CTCTGACACGACACTGACAC+AGG | - | chr6.1:29278380-29278399 | None:intergenic | 55.0% | |
| GATATGGAGCAGGACGTGAG+TGG | + | chr6.1:29280568-29280587 | MS.gene94853:intron | 55.0% | |
| GATTAGGCGTGTCCTGGAGT+CGG | - | chr6.1:29278421-29278440 | None:intergenic | 55.0% | |
| GCCCCGAAGCTATCCAAAGA+AGG | - | chr6.1:29279783-29279802 | None:intergenic | 55.0% | |
| GTGAAAGCCGTCGTGGATGT+CGG | + | chr6.1:29279292-29279311 | MS.gene94853:intron | 55.0% | |
| TAGTGAAGGGATGTCCGCCA+TGG | - | chr6.1:29278908-29278927 | None:intergenic | 55.0% | |
| TCACGTCCTGCTCCATATCC+AGG | - | chr6.1:29280567-29280586 | None:intergenic | 55.0% | |
| TGTATCCTTTGGCGGGACCA+TGG | + | chr6.1:29278888-29278907 | MS.gene94853:intron | 55.0% | |
| ! | GGCTATTTCAGGGGACCGAA+TGG | - | chr6.1:29280327-29280346 | None:intergenic | 55.0% |
| !! | ATCACGGATTAGGCGTGTCC+TGG | - | chr6.1:29278427-29278446 | None:intergenic | 55.0% |
| ATCCTTTGGCGGGACCATGG+CGG | + | chr6.1:29278891-29278910 | MS.gene94853:intron | 60.0% | |
| GCAGGACGTGAGTGGAATGG+AGG | + | chr6.1:29280576-29280595 | MS.gene94853:intron | 60.0% | |
| GGAGCAGGACGTGAGTGGAA+TGG | + | chr6.1:29280573-29280592 | MS.gene94853:intron | 60.0% | |
| TCAACCACCGCGATCCAGCA+TGG | - | chr6.1:29279072-29279091 | None:intergenic | 60.0% | |
| TCCTGGAGTCGGACACACGT+CGG | - | chr6.1:29278410-29278429 | None:intergenic | 60.0% | |
| !! | AGTTCCACGCCGGCTCTTAG+TGG | + | chr6.1:29279340-29279359 | MS.gene94853:intron | 60.0% |
| ACCGACGTGTGTCCGACTCC+AGG | + | chr6.1:29278406-29278425 | MS.gene94853:intron | 65.0% | |
| CTAGCCACTAAGAGCCGGCG+TGG | - | chr6.1:29279347-29279366 | None:intergenic | 65.0% | |
| GTCCGCCATGGTCCCGCCAA+AGG | - | chr6.1:29278896-29278915 | None:intergenic | 70.0% | |
| TCGGCCATGCTGGATCGCGG+TGG | + | chr6.1:29279065-29279084 | MS.gene94853:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 29277907 | 29281773 | 29277907 | ID=MS.gene94853 |
| chr6.1 | mRNA | 29277907 | 29281773 | 29277907 | ID=MS.gene94853.t1;Parent=MS.gene94853 |
| chr6.1 | exon | 29277907 | 29277987 | 29277907 | ID=MS.gene94853.t1.exon1;Parent=MS.gene94853.t1 |
| chr6.1 | CDS | 29277907 | 29277987 | 29277907 | ID=cds.MS.gene94853.t1;Parent=MS.gene94853.t1 |
| chr6.1 | exon | 29278072 | 29278173 | 29278072 | ID=MS.gene94853.t1.exon2;Parent=MS.gene94853.t1 |
| chr6.1 | CDS | 29278072 | 29278173 | 29278072 | ID=cds.MS.gene94853.t1;Parent=MS.gene94853.t1 |
| chr6.1 | exon | 29279495 | 29279638 | 29279495 | ID=MS.gene94853.t1.exon3;Parent=MS.gene94853.t1 |
| chr6.1 | CDS | 29279495 | 29279638 | 29279495 | ID=cds.MS.gene94853.t1;Parent=MS.gene94853.t1 |
| chr6.1 | exon | 29279841 | 29280053 | 29279841 | ID=MS.gene94853.t1.exon4;Parent=MS.gene94853.t1 |
| chr6.1 | CDS | 29279841 | 29280053 | 29279841 | ID=cds.MS.gene94853.t1;Parent=MS.gene94853.t1 |
| chr6.1 | exon | 29281387 | 29281773 | 29281387 | ID=MS.gene94853.t1.exon5;Parent=MS.gene94853.t1 |
| chr6.1 | CDS | 29281387 | 29281773 | 29281387 | ID=cds.MS.gene94853.t1;Parent=MS.gene94853.t1 |
| Gene Sequence |
| Protein sequence |
