Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94894.t1 | XP_003605381.1 | 95.6 | 481 | 21 | 0 | 1 | 481 | 33 | 513 | 2.90E-259 | 904 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94894.t1 | Q9SA38 | 49.3 | 481 | 238 | 3 | 2 | 476 | 29 | 509 | 6.5e-135 | 482.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94894.t1 | B7FM11 | 95.6 | 481 | 21 | 0 | 1 | 481 | 33 | 513 | 2.1e-259 | 904.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049821 | MS.gene94894 | 0.802699 | 4.96E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene94894 | 0.801292 | 9.64E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene94894 | 0.839764 | 1.30E-57 | -1.69E-46 |
| MS.gene050808 | MS.gene94894 | 0.806454 | 8.16E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene94894 | 0.845946 | 2.96E-59 | -1.69E-46 |
| MS.gene051720 | MS.gene94894 | 0.843015 | 1.82E-58 | -1.69E-46 |
| MS.gene051957 | MS.gene94894 | 0.801526 | 8.64E-49 | -1.69E-46 |
| MS.gene053396 | MS.gene94894 | 0.805642 | 1.21E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene94894 | 0.827942 | 1.18E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene94894 | 0.830635 | 2.63E-55 | -1.69E-46 |
| MS.gene055466 | MS.gene94894 | 0.842573 | 2.38E-58 | -1.69E-46 |
| MS.gene055468 | MS.gene94894 | 0.833001 | 6.85E-56 | -1.69E-46 |
| MS.gene056005 | MS.gene94894 | 0.814746 | 1.32E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene94894 | 0.800737 | 1.25E-48 | -1.69E-46 |
| MS.gene057414 | MS.gene94894 | 0.803335 | 3.66E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene94894 | 0.810848 | 9.40E-51 | -1.69E-46 |
| MS.gene060519 | MS.gene94894 | 0.831138 | 1.98E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene94894 | 0.815848 | 7.49E-52 | -1.69E-46 |
| MS.gene060634 | MS.gene94894 | -0.82025 | 7.57E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94894.t1 | MTR_4g030210 | 95.634 | 481 | 21 | 0 | 1 | 481 | 33 | 513 | 0.0 | 917 |
| MS.gene94894.t1 | MTR_4g030040 | 84.551 | 479 | 73 | 1 | 1 | 478 | 27 | 505 | 0.0 | 830 |
| MS.gene94894.t1 | MTR_4g030040 | 84.551 | 479 | 73 | 1 | 1 | 478 | 28 | 506 | 0.0 | 829 |
| MS.gene94894.t1 | MTR_8g039190 | 73.597 | 481 | 122 | 2 | 1 | 477 | 29 | 508 | 0.0 | 728 |
| MS.gene94894.t1 | MTR_5g080050 | 70.370 | 486 | 134 | 3 | 1 | 477 | 27 | 511 | 0.0 | 677 |
| MS.gene94894.t1 | MTR_5g082760 | 69.980 | 493 | 132 | 3 | 1 | 477 | 29 | 521 | 0.0 | 676 |
| MS.gene94894.t1 | MTR_8g039070 | 66.736 | 481 | 119 | 4 | 1 | 477 | 29 | 472 | 0.0 | 633 |
| MS.gene94894.t1 | MTR_8g447340 | 47.336 | 488 | 246 | 4 | 2 | 478 | 32 | 519 | 3.08e-168 | 485 |
| MS.gene94894.t1 | MTR_2g081930 | 32.186 | 494 | 310 | 7 | 1 | 474 | 35 | 523 | 5.59e-76 | 248 |
| MS.gene94894.t1 | MTR_4g120720 | 39.465 | 299 | 144 | 6 | 51 | 344 | 2 | 268 | 1.75e-61 | 202 |
| MS.gene94894.t1 | MTR_4g081490 | 30.769 | 390 | 246 | 7 | 103 | 478 | 66 | 445 | 9.54e-48 | 171 |
| MS.gene94894.t1 | MTR_2g081950 | 31.186 | 388 | 242 | 7 | 102 | 469 | 18 | 400 | 2.31e-45 | 163 |
| MS.gene94894.t1 | MTR_2g081960 | 33.645 | 107 | 71 | 0 | 1 | 107 | 34 | 140 | 1.20e-17 | 80.1 |
| MS.gene94894.t1 | MTR_4g081480 | 30.841 | 107 | 70 | 2 | 1 | 103 | 38 | 144 | 1.82e-14 | 70.9 |
| MS.gene94894.t1 | MTR_3g116060 | 27.742 | 155 | 109 | 1 | 115 | 266 | 68 | 222 | 6.97e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94894.t1 | AT1G16390 | 49.272 | 481 | 238 | 3 | 2 | 476 | 29 | 509 | 7.39e-175 | 501 |
| MS.gene94894.t1 | AT1G79360 | 48.276 | 493 | 239 | 6 | 2 | 478 | 24 | 516 | 1.15e-171 | 493 |
| MS.gene94894.t1 | AT1G79410 | 45.135 | 483 | 259 | 6 | 1 | 479 | 28 | 508 | 8.35e-146 | 427 |
| MS.gene94894.t1 | AT1G16370 | 43.892 | 483 | 266 | 5 | 1 | 479 | 33 | 514 | 2.07e-144 | 424 |
| MS.gene94894.t1 | AT1G73220 | 37.782 | 487 | 290 | 4 | 1 | 478 | 48 | 530 | 2.78e-107 | 329 |
| MS.gene94894.t1 | AT3G20660 | 30.754 | 491 | 318 | 10 | 1 | 479 | 37 | 517 | 8.63e-71 | 234 |
| MS.gene94894.t1 | AT3G51490 | 30.058 | 173 | 113 | 3 | 101 | 266 | 3 | 174 | 4.19e-13 | 72.0 |
| MS.gene94894.t1 | AT3G51490 | 30.058 | 173 | 113 | 3 | 101 | 266 | 53 | 224 | 4.83e-13 | 72.0 |
| MS.gene94894.t1 | AT3G51490 | 29.189 | 185 | 123 | 3 | 101 | 278 | 53 | 236 | 5.64e-13 | 71.6 |
| MS.gene94894.t1 | AT1G20840 | 29.193 | 161 | 99 | 2 | 115 | 266 | 68 | 222 | 3.14e-11 | 66.2 |
| MS.gene94894.t1 | AT1G20840 | 29.193 | 161 | 99 | 2 | 115 | 266 | 68 | 222 | 3.14e-11 | 66.2 |
Find 74 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCATGACCATGAAGATTT+TGG | 0.105653 | 4.1:+70176234 | None:intergenic |
| TCAAATTCCTTATCGGATTT+TGG | 0.181510 | 4.1:-70175975 | MS.gene94894:CDS |
| GGAATTGGAATGGTTTATTT+TGG | 0.195131 | 4.1:-70175508 | MS.gene94894:CDS |
| ATCTTCTCTTATGGTGTGTT+TGG | 0.229402 | 4.1:-70175103 | MS.gene94894:CDS |
| TCTTCTCTTATGGTGTGTTT+GGG | 0.236997 | 4.1:-70175102 | MS.gene94894:CDS |
| GAAGCAATTGCAATGCTTAA+AGG | 0.243155 | 4.1:-70175691 | MS.gene94894:CDS |
| TTCTTCATAGGTTGCCTAAT+TGG | 0.243229 | 4.1:-70176129 | MS.gene94894:CDS |
| TTGTGTCGCTACTTATTTCT+TGG | 0.264486 | 4.1:-70175407 | MS.gene94894:CDS |
| TAAGCATTGCAATTGCTTCT+TGG | 0.272991 | 4.1:+70175695 | None:intergenic |
| CCACAATCTTCATTCTTCAT+AGG | 0.305982 | 4.1:-70176141 | MS.gene94894:CDS |
| CCTTTAGCCGTTGGGAACTT+AGG | 0.321956 | 4.1:-70175481 | MS.gene94894:CDS |
| TCGGCTTTCAAATTCCTTAT+CGG | 0.326745 | 4.1:-70175982 | MS.gene94894:CDS |
| GAGAGGAGTTTACGAACATT+TGG | 0.340782 | 4.1:-70176408 | MS.gene94894:CDS |
| ATGGTTCTTGGTATTGGAAT+TGG | 0.344101 | 4.1:-70175523 | MS.gene94894:CDS |
| GCAAAATCCCAAAATCTTCA+TGG | 0.345391 | 4.1:-70176242 | MS.gene94894:CDS |
| TGTGTTATGTGTGTTGTTGT+TGG | 0.359401 | 4.1:-70175328 | MS.gene94894:CDS |
| ACAAGCTCTTTGTGATACTA+TGG | 0.364002 | 4.1:-70175026 | MS.gene94894:CDS |
| GCTATAATTTACTCAATCAT+TGG | 0.374272 | 4.1:-70175769 | MS.gene94894:CDS |
| CTTAGGGTTCGACATTTACT+TGG | 0.376808 | 4.1:-70175464 | MS.gene94894:CDS |
| ATGTGTGTTGTTGTTGGATC+AGG | 0.394930 | 4.1:-70175322 | MS.gene94894:CDS |
| CTTTAGCCGTTGGGAACTTA+GGG | 0.397423 | 4.1:-70175480 | MS.gene94894:CDS |
| GCAATGATGGTTCTTGGTAT+TGG | 0.397888 | 4.1:-70175529 | MS.gene94894:CDS |
| GTCGTGTTCCTCACACTTGT+CGG | 0.398211 | 4.1:+70175205 | None:intergenic |
| GAAAAGAATGGTTGCAATGA+TGG | 0.411878 | 4.1:-70175542 | MS.gene94894:CDS |
| CTACTTATTTCTTGGAGAAT+CGG | 0.419849 | 4.1:-70175399 | MS.gene94894:CDS |
| ATGGTTGCAATGATGGTTCT+TGG | 0.423914 | 4.1:-70175535 | MS.gene94894:CDS |
| ATTGAAAATGCAAGAATTGA+CGG | 0.431608 | 4.1:+70175367 | None:intergenic |
| GGAGTACAAGGAATCAAAGT+TGG | 0.436137 | 4.1:-70175301 | MS.gene94894:CDS |
| TGTTGTGTTTAATGCCTTGA+TGG | 0.436862 | 4.1:-70175440 | MS.gene94894:CDS |
| TCCCAAAATCTTCATGGTCA+TGG | 0.441703 | 4.1:-70176236 | MS.gene94894:CDS |
| CTAATGCAAAAGAACCAATT+AGG | 0.442316 | 4.1:+70176115 | None:intergenic |
| CCTAAGTTCCCAACGGCTAA+AGG | 0.454852 | 4.1:+70175481 | None:intergenic |
| CAAAGTTGTTTGAGACAAGC+TGG | 0.456719 | 4.1:-70175570 | MS.gene94894:CDS |
| TTGGTATGCCTTTAGCCGTT+GGG | 0.459450 | 4.1:-70175489 | MS.gene94894:CDS |
| AGAGCTTGTCCTTTAGTCTC+TGG | 0.466490 | 4.1:+70175040 | None:intergenic |
| CCCAAAATCTTCATGGTCAT+GGG | 0.481349 | 4.1:-70176235 | MS.gene94894:CDS |
| ACTTTAGCTGATACATCCCT+TGG | 0.481619 | 4.1:-70176090 | MS.gene94894:CDS |
| ATGATTGAGTAAATTATAGC+TGG | 0.481999 | 4.1:+70175772 | None:intergenic |
| GAGGAACACGACAACGTCAT+TGG | 0.501684 | 4.1:-70175194 | MS.gene94894:CDS |
| TTTGGTATGCCTTTAGCCGT+TGG | 0.503043 | 4.1:-70175490 | MS.gene94894:CDS |
| TAAAAGCCACCTTGGAGACT+CGG | 0.517844 | 4.1:+70175732 | None:intergenic |
| TCTTGGTATTGGAATTGGAA+TGG | 0.520997 | 4.1:-70175518 | MS.gene94894:CDS |
| GGAGTTTACGAACATTTGGA+TGG | 0.525287 | 4.1:-70176404 | MS.gene94894:CDS |
| GTTGTTGGATCAGGAGTACA+AGG | 0.526318 | 4.1:-70175313 | MS.gene94894:CDS |
| TAGTACGGAATGGAGGTTCA+CGG | 0.527397 | 4.1:-70175905 | MS.gene94894:CDS |
| ATGAACGCCAAAATCCGATA+AGG | 0.531545 | 4.1:+70175968 | None:intergenic |
| CCTTGCATTAAAAGCCACCT+TGG | 0.537931 | 4.1:+70175724 | None:intergenic |
| AAGCTGGGCTTTGAAAAGAA+TGG | 0.539389 | 4.1:-70175554 | MS.gene94894:CDS |
| GAGTACAAGGAATCAAAGTT+GGG | 0.541950 | 4.1:-70175300 | MS.gene94894:CDS |
| AACCAATGTTTGGATTTACT+CGG | 0.542219 | 4.1:-70176001 | MS.gene94894:CDS |
| CTTCTCTTATGGTGTGTTTG+GGG | 0.557389 | 4.1:-70175101 | MS.gene94894:CDS |
| TGTGCAAGTAGCTTCGTCAC+AGG | 0.558448 | 4.1:-70176168 | MS.gene94894:CDS |
| AATCTGTGCAATGCCATGTT+GGG | 0.563621 | 4.1:+70176295 | None:intergenic |
| AAAGTTGTTTGAGACAAGCT+GGG | 0.565151 | 4.1:-70175569 | MS.gene94894:CDS |
| ACAAGGAATCAAAGTTGGGT+TGG | 0.576373 | 4.1:-70175296 | MS.gene94894:CDS |
| GAATCTGTGCAATGCCATGT+TGG | 0.577316 | 4.1:+70176294 | None:intergenic |
| TGAAAACACAATGATGATTG+AGG | 0.578552 | 4.1:+70176023 | None:intergenic |
| AAATCTTCATGGTCATGGGA+TGG | 0.583642 | 4.1:-70176231 | MS.gene94894:CDS |
| ACAAGACGGTATTTCCATCA+AGG | 0.595551 | 4.1:+70175426 | None:intergenic |
| TGCATTTAGCAACAAACTCG+CGG | 0.597000 | 4.1:+70175639 | None:intergenic |
| TCTTTGTTACCGAGTCTCCA+AGG | 0.601885 | 4.1:-70175741 | MS.gene94894:CDS |
| ACGGAATGGAGGTTCACGGT+TGG | 0.606795 | 4.1:-70175901 | MS.gene94894:CDS |
| AGCCGAGTAAATCCAAACAT+TGG | 0.608114 | 4.1:+70175999 | None:intergenic |
| CATCAGATGAAATGATAGAG+AGG | 0.609645 | 4.1:-70176425 | None:intergenic |
| GAGTTTACGAACATTTGGAT+GGG | 0.612517 | 4.1:-70176403 | MS.gene94894:CDS |
| AATGCTTAAAGGAATGAGCT+CGG | 0.634915 | 4.1:-70175680 | MS.gene94894:CDS |
| AAATAAGTAGCGACACAAGA+CGG | 0.636296 | 4.1:+70175412 | None:intergenic |
| AGTTGTTTCCGACAAGTGTG+AGG | 0.640373 | 4.1:-70175213 | MS.gene94894:CDS |
| ACACCGACGATTACCCAACA+TGG | 0.652539 | 4.1:-70176308 | MS.gene94894:CDS |
| GTCGAACCCTAAGTTCCCAA+CGG | 0.657526 | 4.1:+70175474 | None:intergenic |
| TTAGGGTACATGTCATTACC+CGG | 0.657645 | 4.1:-70175853 | MS.gene94894:CDS |
| CCTATGAAGAATGAAGATTG+TGG | 0.667133 | 4.1:+70176141 | None:intergenic |
| ATGCCATGTTGGGTAATCGT+CGG | 0.699036 | 4.1:+70176305 | None:intergenic |
| TTGTTACCGAGTCTCCAAGG+TGG | 0.709073 | 4.1:-70175738 | MS.gene94894:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAATCATATCTCAA+TGG | - | chr4.1:70175205-70175224 | MS.gene94894:CDS | 20.0% |
| !! | AAAAATGATATCTTCTCTTA+TGG | - | chr4.1:70176293-70176312 | MS.gene94894:CDS | 20.0% |
| !!! | AATATTTTTGCTTCACATTA+GGG | - | chr4.1:70175535-70175554 | MS.gene94894:CDS | 20.0% |
| ! | ATGATTGAGTAAATTATAGC+TGG | + | chr4.1:70175636-70175655 | None:intergenic | 25.0% |
| ! | ATTGAAAATGCAAGAATTGA+CGG | + | chr4.1:70176041-70176060 | None:intergenic | 25.0% |
| ! | GCTATAATTTACTCAATCAT+TGG | - | chr4.1:70175636-70175655 | MS.gene94894:CDS | 25.0% |
| !!! | ATGTGTTCTTGTTTTGTTAA+CGG | - | chr4.1:70175470-70175489 | MS.gene94894:CDS | 25.0% |
| !!! | GAATATTTTTGCTTCACATT+AGG | - | chr4.1:70175534-70175553 | MS.gene94894:CDS | 25.0% |
| !!! | GATATGATTGTTTTTTGTGA+TGG | + | chr4.1:70175201-70175220 | None:intergenic | 25.0% |
| AACCAATGTTTGGATTTACT+CGG | - | chr4.1:70175404-70175423 | MS.gene94894:CDS | 30.0% | |
| CTAATGCAAAAGAACCAATT+AGG | + | chr4.1:70175293-70175312 | None:intergenic | 30.0% | |
| GTTAACGGAAAAAGTTAGTA+CGG | - | chr4.1:70175485-70175504 | MS.gene94894:CDS | 30.0% | |
| TGAAAACACAATGATGATTG+AGG | + | chr4.1:70175385-70175404 | None:intergenic | 30.0% | |
| ! | CTACTTATTTCTTGGAGAAT+CGG | - | chr4.1:70176006-70176025 | MS.gene94894:CDS | 30.0% |
| ! | GGAATTGGAATGGTTTATTT+TGG | - | chr4.1:70175897-70175916 | MS.gene94894:CDS | 30.0% |
| ! | TCAAATTCCTTATCGGATTT+TGG | - | chr4.1:70175430-70175449 | MS.gene94894:CDS | 30.0% |
| ! | TTGTGTTTTCAACCAATGTT+TGG | - | chr4.1:70175394-70175413 | MS.gene94894:CDS | 30.0% |
| !!! | AGTCCTTTTTTAATATCTGC+TGG | - | chr4.1:70176266-70176285 | MS.gene94894:CDS | 30.0% |
| !!! | ATCGTTTTTTAGTGCTACTA+CGG | - | chr4.1:70176139-70176158 | MS.gene94894:CDS | 30.0% |
| !!! | CAACATGTTTTTTCTTCCAA+GGG | + | chr4.1:70175334-70175353 | None:intergenic | 30.0% |
| !!! | GTCCTTTTTTAATATCTGCT+GGG | - | chr4.1:70176267-70176286 | MS.gene94894:CDS | 30.0% |
| !!! | TCAACATGTTTTTTCTTCCA+AGG | + | chr4.1:70175335-70175354 | None:intergenic | 30.0% |
| !!! | TTTTGGGATTTTGCAAATGT+TGG | + | chr4.1:70175157-70175176 | None:intergenic | 30.0% |
| AAAAAGTTAGTACGGAATGG+AGG | - | chr4.1:70175493-70175512 | MS.gene94894:CDS | 35.0% | |
| AAATAAGTAGCGACACAAGA+CGG | + | chr4.1:70175996-70176015 | None:intergenic | 35.0% | |
| AATGCTTAAAGGAATGAGCT+CGG | - | chr4.1:70175725-70175744 | MS.gene94894:CDS | 35.0% | |
| ACAAGCTCTTTGTGATACTA+TGG | - | chr4.1:70176379-70176398 | MS.gene94894:CDS | 35.0% | |
| ATCTTCTCTTATGGTGTGTT+TGG | - | chr4.1:70176302-70176321 | MS.gene94894:CDS | 35.0% | |
| CCACAATCTTCATTCTTCAT+AGG | - | chr4.1:70175264-70175283 | MS.gene94894:CDS | 35.0% | |
| CCTATGAAGAATGAAGATTG+TGG | + | chr4.1:70175267-70175286 | None:intergenic | 35.0% | |
| CGTGGAAAAATGTTTACATC+TGG | - | chr4.1:70175601-70175620 | MS.gene94894:CDS | 35.0% | |
| CTCCCAGCAGATATTAAAAA+AGG | + | chr4.1:70176272-70176291 | None:intergenic | 35.0% | |
| GAAAAGAATGGTTGCAATGA+TGG | - | chr4.1:70175863-70175882 | MS.gene94894:CDS | 35.0% | |
| GAAGCAATTGCAATGCTTAA+AGG | - | chr4.1:70175714-70175733 | MS.gene94894:CDS | 35.0% | |
| GAGTACAAGGAATCAAAGTT+GGG | - | chr4.1:70176105-70176124 | MS.gene94894:CDS | 35.0% | |
| GAGTTTACGAACATTTGGAT+GGG | - | chr4.1:70175002-70175021 | MS.gene94894:CDS | 35.0% | |
| GCAAAATCCCAAAATCTTCA+TGG | - | chr4.1:70175163-70175182 | MS.gene94894:CDS | 35.0% | |
| TCGAAAAACATAAGCTACAC+CGG | + | chr4.1:70175574-70175593 | None:intergenic | 35.0% | |
| TCGGCTTTCAAATTCCTTAT+CGG | - | chr4.1:70175423-70175442 | MS.gene94894:CDS | 35.0% | |
| TCTTCTCTTATGGTGTGTTT+GGG | - | chr4.1:70176303-70176322 | MS.gene94894:CDS | 35.0% | |
| TGTTGTGTTTAATGCCTTGA+TGG | - | chr4.1:70175965-70175984 | MS.gene94894:CDS | 35.0% | |
| TTCTTCATAGGTTGCCTAAT+TGG | - | chr4.1:70175276-70175295 | MS.gene94894:CDS | 35.0% | |
| ! | AAAGTTGTTTGAGACAAGCT+GGG | - | chr4.1:70175836-70175855 | MS.gene94894:CDS | 35.0% |
| ! | ATGGTTCTTGGTATTGGAAT+TGG | - | chr4.1:70175882-70175901 | MS.gene94894:CDS | 35.0% |
| ! | GTGAGACAAGCTATTGTTTT+CGG | - | chr4.1:70176233-70176252 | MS.gene94894:CDS | 35.0% |
| ! | TAAGCATTGCAATTGCTTCT+TGG | + | chr4.1:70175713-70175732 | None:intergenic | 35.0% |
| ! | TCTTGGTATTGGAATTGGAA+TGG | - | chr4.1:70175887-70175906 | MS.gene94894:CDS | 35.0% |
| ! | TGTGTTATGTGTGTTGTTGT+TGG | - | chr4.1:70176077-70176096 | MS.gene94894:CDS | 35.0% |
| ! | TTGTGTCGCTACTTATTTCT+TGG | - | chr4.1:70175998-70176017 | MS.gene94894:CDS | 35.0% |
| !! | ATGTTTTTCGATCTTCATCG+TGG | - | chr4.1:70175583-70175602 | MS.gene94894:CDS | 35.0% |
| !!! | CTTTTTTAATATCTGCTGGG+AGG | - | chr4.1:70176270-70176289 | MS.gene94894:CDS | 35.0% |
| AAATCTTCATGGTCATGGGA+TGG | - | chr4.1:70175174-70175193 | MS.gene94894:CDS | 40.0% | |
| AAATGCACCCCCTAAACAAA+AGG | - | chr4.1:70175782-70175801 | MS.gene94894:CDS | 40.0% | |
| AATCTGTGCAATGCCATGTT+GGG | + | chr4.1:70175113-70175132 | None:intergenic | 40.0% | |
| ACAAGACGGTATTTCCATCA+AGG | + | chr4.1:70175982-70176001 | None:intergenic | 40.0% | |
| ACAAGGAATCAAAGTTGGGT+TGG | - | chr4.1:70176109-70176128 | MS.gene94894:CDS | 40.0% | |
| ACTTTAGCTGATACATCCCT+TGG | - | chr4.1:70175315-70175334 | MS.gene94894:CDS | 40.0% | |
| AGCCGAGTAAATCCAAACAT+TGG | + | chr4.1:70175409-70175428 | None:intergenic | 40.0% | |
| ATGAACGCCAAAATCCGATA+AGG | + | chr4.1:70175440-70175459 | None:intergenic | 40.0% | |
| ATGGTTGCAATGATGGTTCT+TGG | - | chr4.1:70175870-70175889 | MS.gene94894:CDS | 40.0% | |
| CCCAAAATCTTCATGGTCAT+GGG | - | chr4.1:70175170-70175189 | MS.gene94894:CDS | 40.0% | |
| CGAAAAACATAAGCTACACC+GGG | + | chr4.1:70175573-70175592 | None:intergenic | 40.0% | |
| CGGAAAAAGTTAGTACGGAA+TGG | - | chr4.1:70175490-70175509 | MS.gene94894:CDS | 40.0% | |
| CTTAGGGTTCGACATTTACT+TGG | - | chr4.1:70175941-70175960 | MS.gene94894:CDS | 40.0% | |
| CTTCTCTTATGGTGTGTTTG+GGG | - | chr4.1:70176304-70176323 | MS.gene94894:CDS | 40.0% | |
| GAGAGGAGTTTACGAACATT+TGG | - | chr4.1:70174997-70175016 | MS.gene94894:CDS | 40.0% | |
| GCAATGATGGTTCTTGGTAT+TGG | - | chr4.1:70175876-70175895 | MS.gene94894:CDS | 40.0% | |
| GGAGTACAAGGAATCAAAGT+TGG | - | chr4.1:70176104-70176123 | MS.gene94894:CDS | 40.0% | |
| GGAGTTTACGAACATTTGGA+TGG | - | chr4.1:70175001-70175020 | MS.gene94894:CDS | 40.0% | |
| TCCCAAAATCTTCATGGTCA+TGG | - | chr4.1:70175169-70175188 | MS.gene94894:CDS | 40.0% | |
| TGCATTTAGCAACAAACTCG+CGG | + | chr4.1:70175769-70175788 | None:intergenic | 40.0% | |
| TTAGGGTACATGTCATTACC+CGG | - | chr4.1:70175552-70175571 | MS.gene94894:CDS | 40.0% | |
| ! | ATGTGTGTTGTTGTTGGATC+AGG | - | chr4.1:70176083-70176102 | MS.gene94894:CDS | 40.0% |
| ! | CAAAGTTGTTTGAGACAAGC+TGG | - | chr4.1:70175835-70175854 | MS.gene94894:CDS | 40.0% |
| ! | CCCATGACCATGAAGATTTT+GGG | + | chr4.1:70175173-70175192 | None:intergenic | 40.0% |
| ! | CTTGCATTTTCAATAGCGAG+TGG | - | chr4.1:70176047-70176066 | MS.gene94894:CDS | 40.0% |
| ! | TCCCATGACCATGAAGATTT+TGG | + | chr4.1:70175174-70175193 | None:intergenic | 40.0% |
| !! | AAACCCGAAGCCTTTTGTTT+AGG | + | chr4.1:70175795-70175814 | None:intergenic | 40.0% |
| !! | AACCCGAAGCCTTTTGTTTA+GGG | + | chr4.1:70175794-70175813 | None:intergenic | 40.0% |
| !! | AAGCTGGGCTTTGAAAAGAA+TGG | - | chr4.1:70175851-70175870 | MS.gene94894:CDS | 40.0% |
| !! | GGATTTTGGCGTTCATCTAT+AGG | - | chr4.1:70175444-70175463 | MS.gene94894:CDS | 40.0% |
| !!! | CTTGTTTTGCCAGAGACTAA+AGG | - | chr4.1:70176356-70176375 | MS.gene94894:CDS | 40.0% |
| ACCCCCTAAACAAAAGGCTT+CGG | - | chr4.1:70175788-70175807 | MS.gene94894:CDS | 45.0% | |
| AGAGCTTGTCCTTTAGTCTC+TGG | + | chr4.1:70176368-70176387 | None:intergenic | 45.0% | |
| ATGCCATGTTGGGTAATCGT+CGG | + | chr4.1:70175103-70175122 | None:intergenic | 45.0% | |
| CCTTGCATTAAAAGCCACCT+TGG | + | chr4.1:70175684-70175703 | None:intergenic | 45.0% | |
| CTTTAGCCGTTGGGAACTTA+GGG | - | chr4.1:70175925-70175944 | MS.gene94894:CDS | 45.0% | |
| GAATCTGTGCAATGCCATGT+TGG | + | chr4.1:70175114-70175133 | None:intergenic | 45.0% | |
| TAAAAGCCACCTTGGAGACT+CGG | + | chr4.1:70175676-70175695 | None:intergenic | 45.0% | |
| TAGTACGGAATGGAGGTTCA+CGG | - | chr4.1:70175500-70175519 | MS.gene94894:CDS | 45.0% | |
| TCTTTGTTACCGAGTCTCCA+AGG | - | chr4.1:70175664-70175683 | MS.gene94894:CDS | 45.0% | |
| TTGGTATGCCTTTAGCCGTT+GGG | - | chr4.1:70175916-70175935 | MS.gene94894:CDS | 45.0% | |
| TTTGGTATGCCTTTAGCCGT+TGG | - | chr4.1:70175915-70175934 | MS.gene94894:CDS | 45.0% | |
| ! | AGTTGTTTCCGACAAGTGTG+AGG | - | chr4.1:70176192-70176211 | MS.gene94894:CDS | 45.0% |
| ! | CCAAGGTGGCTTTTAATGCA+AGG | - | chr4.1:70175681-70175700 | MS.gene94894:CDS | 45.0% |
| ! | GTTGTTGGATCAGGAGTACA+AGG | - | chr4.1:70176092-70176111 | MS.gene94894:CDS | 45.0% |
| !! | ACCCGAAGCCTTTTGTTTAG+GGG | + | chr4.1:70175793-70175812 | None:intergenic | 45.0% |
| ACACCGACGATTACCCAACA+TGG | - | chr4.1:70175097-70175116 | MS.gene94894:CDS | 50.0% | |
| CCCCCTAAACAAAAGGCTTC+GGG | - | chr4.1:70175789-70175808 | MS.gene94894:CDS | 50.0% | |
| CCTAAGTTCCCAACGGCTAA+AGG | + | chr4.1:70175927-70175946 | None:intergenic | 50.0% | |
| CCTTTAGCCGTTGGGAACTT+AGG | - | chr4.1:70175924-70175943 | MS.gene94894:CDS | 50.0% | |
| GAGGAACACGACAACGTCAT+TGG | - | chr4.1:70176211-70176230 | MS.gene94894:CDS | 50.0% | |
| GTCGAACCCTAAGTTCCCAA+CGG | + | chr4.1:70175934-70175953 | None:intergenic | 50.0% | |
| GTCGTGTTCCTCACACTTGT+CGG | + | chr4.1:70176203-70176222 | None:intergenic | 50.0% | |
| TGTGCAAGTAGCTTCGTCAC+AGG | - | chr4.1:70175237-70175256 | MS.gene94894:CDS | 50.0% | |
| TTGTTACCGAGTCTCCAAGG+TGG | - | chr4.1:70175667-70175686 | MS.gene94894:CDS | 50.0% | |
| !! | CCCGAAGCCTTTTGTTTAGG+GGG | + | chr4.1:70175792-70175811 | None:intergenic | 50.0% |
| ACGGAATGGAGGTTCACGGT+TGG | - | chr4.1:70175504-70175523 | MS.gene94894:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 70174991 | 70176436 | 70174991 | ID=MS.gene94894 |
| chr4.1 | mRNA | 70174991 | 70176436 | 70174991 | ID=MS.gene94894.t1;Parent=MS.gene94894 |
| chr4.1 | exon | 70174991 | 70176436 | 70174991 | ID=MS.gene94894.t1.exon1;Parent=MS.gene94894.t1 |
| chr4.1 | CDS | 70174991 | 70176436 | 70174991 | ID=cds.MS.gene94894.t1;Parent=MS.gene94894.t1 |
| Gene Sequence |
| Protein sequence |
