Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95916.t1 | RHN78313.1 | 94.9 | 1429 | 73 | 0 | 1 | 1429 | 1 | 1429 | 0.00E+00 | 2636.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95916.t1 | A4L9P7 | 24.5 | 1132 | 717 | 33 | 76 | 1160 | 78 | 1118 | 5.0e-69 | 265.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95916.t1 | A0A396JPV6 | 94.9 | 1429 | 73 | 0 | 1 | 1429 | 1 | 1429 | 0.0e+00 | 2636.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064353 | MS.gene95916 | PPI |
| MS.gene95916 | MS.gene045233 | PPI |
| MS.gene035826 | MS.gene95916 | PPI |
| MS.gene95916 | MS.gene95527 | PPI |
| MS.gene064351 | MS.gene95916 | PPI |
| MS.gene79130 | MS.gene95916 | PPI |
| MS.gene043643 | MS.gene95916 | PPI |
| MS.gene95916 | MS.gene043595 | PPI |
| MS.gene035828 | MS.gene95916 | PPI |
| MS.gene46640 | MS.gene95916 | PPI |
| MS.gene95916 | MS.gene067033 | PPI |
| MS.gene99872 | MS.gene95916 | PPI |
| MS.gene95916 | MS.gene75575 | PPI |
| MS.gene92710 | MS.gene95916 | PPI |
| MS.gene043593 | MS.gene95916 | PPI |
| MS.gene77911 | MS.gene95916 | PPI |
| MS.gene95916 | MS.gene73093 | PPI |
| MS.gene043645 | MS.gene95916 | PPI |
| MS.gene95916 | MS.gene035825 | PPI |
| MS.gene95916 | MS.gene045235 | PPI |
| MS.gene045232 | MS.gene95916 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95916.t1 | MTR_1g037280 | 94.421 | 1434 | 75 | 1 | 1 | 1429 | 1 | 1434 | 0.0 | 2702 |
| MS.gene95916.t1 | MTR_1g037280 | 94.978 | 1394 | 70 | 0 | 1 | 1394 | 1 | 1394 | 0.0 | 2649 |
| MS.gene95916.t1 | MTR_1g037280 | 94.907 | 1394 | 70 | 1 | 1 | 1394 | 1 | 1393 | 0.0 | 2643 |
| MS.gene95916.t1 | MTR_4g134080 | 31.722 | 1179 | 694 | 28 | 6 | 1161 | 14 | 1104 | 1.20e-168 | 550 |
| MS.gene95916.t1 | MTR_4g134080 | 31.722 | 1179 | 694 | 28 | 6 | 1161 | 14 | 1104 | 1.22e-168 | 550 |
| MS.gene95916.t1 | MTR_4g134080 | 31.722 | 1179 | 694 | 28 | 6 | 1161 | 14 | 1104 | 1.43e-168 | 550 |
| MS.gene95916.t1 | MTR_2g027090 | 36.261 | 797 | 470 | 16 | 9 | 789 | 9 | 783 | 4.84e-143 | 480 |
| MS.gene95916.t1 | MTR_2g027090 | 32.095 | 377 | 240 | 8 | 808 | 1173 | 739 | 1110 | 7.08e-43 | 172 |
| MS.gene95916.t1 | MTR_1g014300 | 32.367 | 207 | 130 | 1 | 25 | 231 | 39 | 235 | 2.19e-32 | 127 |
| MS.gene95916.t1 | MTR_1g014270 | 37.427 | 171 | 107 | 0 | 61 | 231 | 53 | 223 | 1.24e-31 | 135 |
| MS.gene95916.t1 | MTR_3g106100 | 36.471 | 170 | 108 | 0 | 62 | 231 | 54 | 223 | 3.02e-30 | 130 |
| MS.gene95916.t1 | MTR_4g006875 | 31.878 | 229 | 144 | 2 | 4 | 231 | 9 | 226 | 1.57e-28 | 124 |
| MS.gene95916.t1 | MTR_4g006875 | 35.583 | 163 | 105 | 0 | 69 | 231 | 26 | 188 | 1.98e-28 | 124 |
| MS.gene95916.t1 | MTR_4g030130 | 28.889 | 135 | 84 | 2 | 2 | 135 | 13 | 136 | 6.26e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95916.t1 | AT1G77600 | 42.597 | 1209 | 582 | 17 | 1 | 1174 | 1 | 1132 | 0.0 | 896 |
| MS.gene95916.t1 | AT1G77600 | 42.597 | 1209 | 582 | 17 | 1 | 1174 | 1 | 1132 | 0.0 | 896 |
| MS.gene95916.t1 | AT1G77600 | 42.110 | 1223 | 582 | 18 | 1 | 1174 | 1 | 1146 | 0.0 | 885 |
| MS.gene95916.t1 | AT5G47690 | 33.998 | 1153 | 650 | 28 | 23 | 1151 | 22 | 1087 | 5.83e-174 | 563 |
| MS.gene95916.t1 | AT5G47690 | 33.998 | 1153 | 650 | 28 | 23 | 1151 | 22 | 1087 | 7.47e-174 | 563 |
| MS.gene95916.t1 | AT5G47690 | 33.998 | 1153 | 650 | 28 | 23 | 1151 | 22 | 1087 | 9.62e-174 | 563 |
| MS.gene95916.t1 | AT5G47690 | 32.990 | 1067 | 614 | 27 | 109 | 1151 | 1 | 990 | 1.30e-149 | 495 |
| MS.gene95916.t1 | AT4G31880 | 39.535 | 172 | 103 | 1 | 60 | 231 | 52 | 222 | 1.42e-36 | 150 |
| MS.gene95916.t1 | AT4G31880 | 39.535 | 172 | 103 | 1 | 60 | 231 | 52 | 222 | 1.49e-36 | 150 |
| MS.gene95916.t1 | AT1G80810 | 39.655 | 174 | 105 | 0 | 60 | 233 | 54 | 227 | 8.47e-33 | 137 |
| MS.gene95916.t1 | AT1G15940 | 39.645 | 169 | 102 | 0 | 62 | 230 | 58 | 226 | 1.63e-32 | 138 |
| MS.gene95916.t1 | AT1G80810 | 39.884 | 173 | 104 | 0 | 60 | 232 | 2 | 174 | 1.89e-32 | 137 |
| MS.gene95916.t1 | AT1G80810 | 39.884 | 173 | 104 | 0 | 60 | 232 | 2 | 174 | 2.00e-32 | 137 |
| MS.gene95916.t1 | AT1G80810 | 39.884 | 173 | 104 | 0 | 60 | 232 | 2 | 174 | 2.00e-32 | 137 |
| MS.gene95916.t1 | AT1G80810 | 39.884 | 173 | 104 | 0 | 60 | 232 | 54 | 226 | 2.81e-32 | 137 |
Find 245 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGATGACGGTGGATTTA+AGG | 0.152329 | 1.3:+20993993 | MS.gene95916:CDS |
| CTTACTGCAAATATTCATTT+TGG | 0.158706 | 1.3:-21004548 | None:intergenic |
| AAATCACTTCTAATAGTTTC+TGG | 0.185261 | 1.3:-20989477 | None:intergenic |
| AAGAGATGCCACTTGTTTAT+TGG | 0.186396 | 1.3:+21004852 | MS.gene95916:CDS |
| AAAGGCACTGAATACTATTT+TGG | 0.215599 | 1.3:+20991193 | MS.gene95916:CDS |
| GTTTGATCAGATGGAGTATT+TGG | 0.219701 | 1.3:+20999727 | MS.gene95916:intron |
| TAAACAAGTGGCATCTCTTT+TGG | 0.230720 | 1.3:-21004848 | None:intergenic |
| TATTGGTTTGTTTGCGGATC+TGG | 0.235562 | 1.3:+20988870 | MS.gene95916:CDS |
| GTCTATGTGGCAAATCCTTT+TGG | 0.236592 | 1.3:+20990396 | MS.gene95916:CDS |
| ACCCCTCCGCGCGGAGAATT+TGG | 0.238445 | 1.3:+20999303 | MS.gene95916:CDS |
| GGACAATGATGTTCCCTCTT+TGG | 0.239274 | 1.3:-21006884 | None:intergenic |
| AATAGCAGAGACCGCAAATT+TGG | 0.243915 | 1.3:-20998405 | None:intergenic |
| TCAATCAGCTTGTCATTTAC+AGG | 0.257752 | 1.3:-20996656 | None:intergenic |
| GTATCTTTGAAGTTGTTTCT+AGG | 0.258326 | 1.3:-21004922 | None:intergenic |
| CAAGTGCCTCCGTCTGATTC+TGG | 0.266339 | 1.3:+21004670 | MS.gene95916:CDS |
| ATGGTGAAGCGGAAAATTTC+AGG | 0.268425 | 1.3:-21002406 | None:intergenic |
| TGTTTATCAGATGGAGTCTT+TGG | 0.268530 | 1.3:+20999251 | MS.gene95916:intron |
| CAATTACTTGAATAATCTTC+TGG | 0.278526 | 1.3:-20999124 | None:intergenic |
| TGAAAGACTTAGGGATAAAA+AGG | 0.284745 | 1.3:+20990743 | MS.gene95916:CDS |
| GAATGAGATGATAAACTATT+TGG | 0.286082 | 1.3:+20991305 | MS.gene95916:CDS |
| GGCAATACGGAAGAAATTAA+AGG | 0.286256 | 1.3:+20991326 | MS.gene95916:CDS |
| GATGTATTTAAACTCATTAT+TGG | 0.292432 | 1.3:+20988853 | MS.gene95916:CDS |
| CCCAACCATTATGCAAAATC+TGG | 0.294391 | 1.3:+20999034 | MS.gene95916:CDS |
| ACATATGGCAGAGTTTATTA+AGG | 0.299383 | 1.3:+21003519 | MS.gene95916:CDS |
| AGCTGAACACCCTAGTTTGC+AGG | 0.303496 | 1.3:+20989917 | MS.gene95916:CDS |
| ACAAGTTATTATCTTTGATT+TGG | 0.303962 | 1.3:-20992673 | None:intergenic |
| CAAAGATACATGTGGCTCTA+AGG | 0.312039 | 1.3:+21004936 | MS.gene95916:CDS |
| CTCAAACTCATCTCCGATAT+CGG | 0.315949 | 1.3:+20987334 | MS.gene95916:CDS |
| TTCCTCGCTTTCATTCAAAA+TGG | 0.330449 | 1.3:-20989449 | None:intergenic |
| ACCTGAGCAGCTTCTGTTGA+AGG | 0.332104 | 1.3:+20990609 | MS.gene95916:intron |
| CAATGCTCTGTTCCAGATCT+TGG | 0.333888 | 1.3:+20999543 | MS.gene95916:CDS |
| CTTCTTTCTCCTGCAGGCAT+TGG | 0.334133 | 1.3:+21003805 | MS.gene95916:CDS |
| TTACAAACTACATACTTTGA+TGG | 0.335176 | 1.3:-20992747 | None:intergenic |
| CAGATCCCAGAGCATGGAAT+TGG | 0.335494 | 1.3:+20991076 | MS.gene95916:intron |
| GTTTGTTCCCTTGAAACTAA+TGG | 0.338281 | 1.3:+20990710 | MS.gene95916:CDS |
| ATATACCGGGTGGAACTTAC+AGG | 0.342993 | 1.3:-21007857 | None:intergenic |
| TCGGTTAAAAGCTGTTATTT+TGG | 0.349900 | 1.3:+20990242 | MS.gene95916:CDS |
| GAAGAACCAACTTTCACAAT+TGG | 0.354302 | 1.3:+20992719 | MS.gene95916:CDS |
| TCAAGTACTTGAATAATCTT+CGG | 0.362388 | 1.3:-20999600 | None:intergenic |
| CAAGTACTTGAATAATCTTC+GGG | 0.363125 | 1.3:-20999599 | None:intergenic |
| CTGTTCGCGGCTGAGGAGAC+TGG | 0.364886 | 1.3:-20988523 | None:intergenic |
| TTCATTAATGTTCTGCTTCG+TGG | 0.366746 | 1.3:-21001008 | None:intergenic |
| CGATATTTCTTCAATTAAGC+TGG | 0.368701 | 1.3:-20990058 | None:intergenic |
| GACAGAGACGGCGTGGGCTG+CGG | 0.369037 | 1.3:+20989961 | MS.gene95916:CDS |
| CTTAAATCCACCGTCATCAT+TGG | 0.371498 | 1.3:-20993992 | None:intergenic |
| ACCTGCTCGCAAGGGTCAAC+AGG | 0.371549 | 1.3:+21004513 | MS.gene95916:CDS |
| ATAAGGATTGCAAGGAGTTC+AGG | 0.374450 | 1.3:+20990975 | MS.gene95916:CDS |
| TCATTAATGTTCTGCTTCGT+GGG | 0.379844 | 1.3:-21001007 | None:intergenic |
| AAACTTGAAAGATAATTTCA+TGG | 0.380268 | 1.3:-20989999 | None:intergenic |
| TTTGATGCTTTGCTATGATA+AGG | 0.381462 | 1.3:+20990958 | MS.gene95916:CDS |
| CAGCTTAATTGAAGAAATAT+CGG | 0.383625 | 1.3:+20990059 | MS.gene95916:CDS |
| AATCACTTCTAATAGTTTCT+GGG | 0.385190 | 1.3:-20989476 | None:intergenic |
| CTGCACAAGCTGGTTGAAAT+TGG | 0.386106 | 1.3:+21004028 | MS.gene95916:CDS |
| ATCCAATTTGTAGGCTGATC+AGG | 0.387190 | 1.3:+20990212 | MS.gene95916:intron |
| TCTCTACTTGGGAAACTGTC+TGG | 0.389430 | 1.3:-21004592 | None:intergenic |
| TTCTAGGGCATTTGAAAAGT+TGG | 0.390445 | 1.3:-21004906 | None:intergenic |
| TCCACTCTTCTTTCTCCTGC+AGG | 0.391465 | 1.3:+21003799 | MS.gene95916:CDS |
| CGACAACCTTCTTCTGTTGA+AGG | 0.394170 | 1.3:+21003565 | MS.gene95916:CDS |
| ACATACCTTTGCGATCAAAA+TGG | 0.394400 | 1.3:-21002425 | None:intergenic |
| CTAGAGAGAATGTGCTTACA+TGG | 0.396271 | 1.3:+20998368 | MS.gene95916:CDS |
| TGATCACCCTGCATATGTTT+TGG | 0.397914 | 1.3:+21003597 | MS.gene95916:CDS |
| CCGTCTGATTCTGGATCAGT+TGG | 0.397960 | 1.3:+21004679 | MS.gene95916:CDS |
| AAGTGTATGCTGACATTTGT+AGG | 0.399605 | 1.3:+21003680 | MS.gene95916:CDS |
| CACTGAATTATTTCGAATCA+AGG | 0.401173 | 1.3:+20988670 | MS.gene95916:CDS |
| CAAGAACCAATTCCATGCTC+TGG | 0.401194 | 1.3:-20991082 | None:intergenic |
| ATGTTCCCTCTTTGGCTGCT+AGG | 0.402349 | 1.3:-21006876 | None:intergenic |
| CCCAGAGATTGCAAAATTGT+TGG | 0.404532 | 1.3:-20999510 | None:intergenic |
| CTGATAGATGCTGTGGTTTG+TGG | 0.404803 | 1.3:+20988593 | MS.gene95916:CDS |
| GCAGAACATTAATGAACTCT+TGG | 0.406714 | 1.3:+21001015 | MS.gene95916:CDS |
| GTATTCGTTATTTCTCTACT+TGG | 0.409687 | 1.3:-21004604 | None:intergenic |
| GTGGCGGTCTTCTTCAGCAT+GGG | 0.414521 | 1.3:+20988612 | MS.gene95916:CDS |
| GATGGACTTCTTGTGAAGAT+TGG | 0.415055 | 1.3:+20993868 | MS.gene95916:CDS |
| TCAATTTGAGATCCAAGATC+TGG | 0.415102 | 1.3:-20999555 | None:intergenic |
| CTCCGAGCCTTTCAGCATTG+AGG | 0.415607 | 1.3:-20996600 | None:intergenic |
| CAGCAAATCTTGTCAATTGA+AGG | 0.416739 | 1.3:+20999790 | MS.gene95916:CDS |
| TCCGAGCCTTTCAGCATTGA+GGG | 0.420202 | 1.3:-20996599 | None:intergenic |
| TATCTTTGAAGTTGTTTCTA+GGG | 0.420430 | 1.3:-21004921 | None:intergenic |
| TTGTCTTCAAAAGGAGGTTC+AGG | 0.420758 | 1.3:-20988695 | None:intergenic |
| CTGAAGTCTCTGAAAGACTT+AGG | 0.422787 | 1.3:+20990733 | MS.gene95916:CDS |
| TTTCAGTCCTCTTCATGAAA+AGG | 0.425682 | 1.3:+20991175 | MS.gene95916:CDS |
| GACTTCAGCCATTAGTTTCA+AGG | 0.429451 | 1.3:-20990718 | None:intergenic |
| AGGCTGATCAGGTTGATATT+CGG | 0.431025 | 1.3:+20990223 | MS.gene95916:intron |
| AGCGAGTTGAGTTCCGATAT+CGG | 0.431457 | 1.3:-20987347 | None:intergenic |
| TCTACTTGAGTTTCAAAAGC+TGG | 0.431914 | 1.3:-20999080 | None:intergenic |
| TGTGAGCTGTAAGGGTTCTC+TGG | 0.437654 | 1.3:+21004798 | MS.gene95916:CDS |
| AAAGTGTTGCTTATTAATGC+TGG | 0.439806 | 1.3:+20988954 | MS.gene95916:CDS |
| CCAGAGATTGCAAAATTGTT+GGG | 0.444162 | 1.3:-20999509 | None:intergenic |
| CTCAAATGCTTGTCTTCAAA+AGG | 0.444732 | 1.3:-20988704 | None:intergenic |
| TCTTTGGCTGTTCGCGGCTG+AGG | 0.447594 | 1.3:-20988530 | None:intergenic |
| AAGCAAACTACTGCTACAAC+AGG | 0.447619 | 1.3:+21006850 | MS.gene95916:CDS |
| TCTTCTTCAGCATGGGGATA+AGG | 0.449335 | 1.3:+20988619 | MS.gene95916:CDS |
| ACAGAGACGGCGTGGGCTGC+GGG | 0.449590 | 1.3:+20989962 | MS.gene95916:CDS |
| GGTCATCAAAGTCAAATAAT+CGG | 0.453439 | 1.3:-20990632 | None:intergenic |
| GCTGAAAGGCTCGGAGAAGC+TGG | 0.453836 | 1.3:+20996607 | MS.gene95916:CDS |
| AAAATATATCTTCAGAGAAA+AGG | 0.454729 | 1.3:+21004641 | MS.gene95916:CDS |
| TCCTGTTGACCCTTGCGAGC+AGG | 0.456837 | 1.3:-21004514 | None:intergenic |
| CGGAGAATTTGGTCAATTGA+AGG | 0.457921 | 1.3:+20999314 | MS.gene95916:CDS |
| TGTGATACAGAAATTTCTCC+TGG | 0.458664 | 1.3:-21004076 | None:intergenic |
| ATCTTCTGATGTTATTGTCT+CGG | 0.459001 | 1.3:-21007816 | None:intergenic |
| ACTCATTATTGGTTTGTTTG+CGG | 0.461013 | 1.3:+20988864 | MS.gene95916:CDS |
| TAGTGATTCTGTGAGCTGTA+AGG | 0.462430 | 1.3:+21004789 | MS.gene95916:CDS |
| CTCGGAGAAGCTGGTTCAAA+TGG | 0.463737 | 1.3:+20996616 | MS.gene95916:CDS |
| AGTTGTCTCAAAATTATTTG+AGG | 0.464264 | 1.3:+20998451 | MS.gene95916:CDS |
| ATTTGCCACATAGACAGCTT+TGG | 0.464896 | 1.3:-20990388 | None:intergenic |
| TCAGGTGTCTGTTAGGAAGA+AGG | 0.466388 | 1.3:+20990835 | MS.gene95916:intron |
| CAAAGCATCAAAACTTTACA+TGG | 0.467743 | 1.3:-20990947 | None:intergenic |
| TGTGGCGGTCTTCTTCAGCA+TGG | 0.469195 | 1.3:+20988611 | MS.gene95916:CDS |
| TCTGCTTCGTGGGGTTCCCT+TGG | 0.472453 | 1.3:-21000997 | None:intergenic |
| AAAGCACAAGCAAATCTGAT+AGG | 0.479460 | 1.3:-21003078 | None:intergenic |
| GTTTGTCCAATTGTGAAAGT+TGG | 0.481602 | 1.3:-20992725 | None:intergenic |
| TTTACTTCTTTGGCTGTTCG+CGG | 0.482036 | 1.3:-20988536 | None:intergenic |
| CTCTCGGACCTATGCTCCTA+AGG | 0.482173 | 1.3:+21004372 | MS.gene95916:CDS |
| AAGTACACCAAAACATATGC+AGG | 0.482688 | 1.3:-21003604 | None:intergenic |
| AAAACACCTCTGAAAGAAAC+CGG | 0.483480 | 1.3:+21004758 | MS.gene95916:CDS |
| TATTCGTTATTTCTCTACTT+GGG | 0.484378 | 1.3:-21004603 | None:intergenic |
| TAAAACTCAGAAATTGTTGA+AGG | 0.485738 | 1.3:+21003044 | MS.gene95916:CDS |
| TTGACGATGAAGTCTTTGTT+CGG | 0.485867 | 1.3:-20987382 | None:intergenic |
| TGAAGTCTCTGAAAGACTTA+GGG | 0.486997 | 1.3:+20990734 | MS.gene95916:CDS |
| CCCCTCAATGCTGAAAGGCT+CGG | 0.487251 | 1.3:+20996598 | MS.gene95916:CDS |
| ACATGATATTTAGCAATTGA+AGG | 0.490794 | 1.3:-21007990 | None:intergenic |
| GAAGGCCTCACAGAAGTTGA+TGG | 0.491941 | 1.3:+20990853 | MS.gene95916:CDS |
| TGATTTGGTTTAACTTGTGA+AGG | 0.492234 | 1.3:-20992658 | None:intergenic |
| TTCTTCTGTAAATCTTCTGC+TGG | 0.497573 | 1.3:+20994017 | MS.gene95916:CDS |
| CTGAGAGAAGAAAGCTCACT+AGG | 0.498678 | 1.3:-21006820 | None:intergenic |
| ACTTCATAAACCTGCTCGCA+AGG | 0.499606 | 1.3:+21004504 | MS.gene95916:CDS |
| CAGAACATTAATGAACTCTT+GGG | 0.500227 | 1.3:+21001016 | MS.gene95916:CDS |
| ACTTTAAATGCATTAAGTCC+AGG | 0.500632 | 1.3:+21004058 | MS.gene95916:CDS |
| ATTGCTCCTTCAACAGAAGA+AGG | 0.501511 | 1.3:-21003571 | None:intergenic |
| GTTTCAAGGGAACAAACATC+AGG | 0.501858 | 1.3:-20990704 | None:intergenic |
| TTCTTCATCTTGCTAAGAAG+TGG | 0.503925 | 1.3:+21002368 | MS.gene95916:CDS |
| TCAGTAATGCTGATGGTCAC+CGG | 0.508493 | 1.3:+21003834 | MS.gene95916:CDS |
| TCCCGAGCATCTTTCTGTTG+CGG | 0.509417 | 1.3:+20991118 | MS.gene95916:CDS |
| AGTGATTCTGTGAGCTGTAA+GGG | 0.509715 | 1.3:+21004790 | MS.gene95916:CDS |
| TTCGTGGGGTTCCCTTGGTA+AGG | 0.513100 | 1.3:-21000992 | None:intergenic |
| GCGCGGAGGGGTACCATACA+AGG | 0.516581 | 1.3:-20999292 | None:intergenic |
| GATATTTCTTCAATTAAGCT+GGG | 0.517070 | 1.3:-20990057 | None:intergenic |
| CAGAAAACTCACATCATCCT+TGG | 0.517733 | 1.3:-21004149 | None:intergenic |
| TCTATTCTTTCAATAGCCAA+TGG | 0.523899 | 1.3:+20999006 | MS.gene95916:CDS |
| TGATAAACTATTTGGCAATA+CGG | 0.526283 | 1.3:+20991313 | MS.gene95916:CDS |
| AGCTGGAACAGAGCATTGTA+TGG | 0.526934 | 1.3:-20999063 | None:intergenic |
| TCCGCAACAGAAAGATGCTC+GGG | 0.527111 | 1.3:-20991119 | None:intergenic |
| GAAATAATTCAGTGACGCAA+AGG | 0.528935 | 1.3:-20988661 | None:intergenic |
| TAATGGTTGGGACATTCCAT+TGG | 0.529375 | 1.3:-20999022 | None:intergenic |
| CAACCGCCTGCATCCTCACT+CGG | 0.532732 | 1.3:-20990653 | None:intergenic |
| CTAACGTTTCTTTCAATCTG+AGG | 0.532966 | 1.3:+20996699 | MS.gene95916:CDS |
| AACTGCAACAAGGAAGAGTA+AGG | 0.533008 | 1.3:-21008039 | None:intergenic |
| GACGATCTGACATCCTTGTA+TGG | 0.537508 | 1.3:+20999279 | MS.gene95916:CDS |
| ATGACTGCAAGAAGCATATG+AGG | 0.539368 | 1.3:-20990033 | None:intergenic |
| TCTTCATCTTGCTAAGAAGT+GGG | 0.541111 | 1.3:+21002369 | MS.gene95916:CDS |
| TTCCGCAACAGAAAGATGCT+CGG | 0.542585 | 1.3:-20991120 | None:intergenic |
| ACTTCAGCCATTAGTTTCAA+GGG | 0.543546 | 1.3:-20990717 | None:intergenic |
| GATTATCTTTCCAATGATGA+CGG | 0.544905 | 1.3:+20993982 | MS.gene95916:CDS |
| AGAGTAAGGAAACCACTGAA+TGG | 0.545682 | 1.3:-21008025 | None:intergenic |
| AAATAATTCAGTGACGCAAA+GGG | 0.548105 | 1.3:-20988660 | None:intergenic |
| AAGAACCAATTCCATGCTCT+GGG | 0.548415 | 1.3:-20991081 | None:intergenic |
| AAGGTATCAAAATTTGCCGT+GGG | 0.548579 | 1.3:-21004102 | None:intergenic |
| GAAGCTGGTTCAAATGGTGT+TGG | 0.548698 | 1.3:+20996622 | MS.gene95916:CDS |
| CAGTAATGCTGATGGTCACC+GGG | 0.548985 | 1.3:+21003835 | MS.gene95916:CDS |
| TGAAAGCCGGTTTCTTTCAG+AGG | 0.549767 | 1.3:-21004764 | None:intergenic |
| GACCAAATTCTCCGCGCGGA+GGG | 0.550547 | 1.3:-20999305 | None:intergenic |
| TGATATCAACCAATGCCTGC+AGG | 0.551132 | 1.3:-21003814 | None:intergenic |
| TAAATATACCTTAGGAGCAT+AGG | 0.551621 | 1.3:-21004380 | None:intergenic |
| ACCAAATTCTCCGCGCGGAG+GGG | 0.552621 | 1.3:-20999304 | None:intergenic |
| TGTGTAGGCACGATTTCCAC+TGG | 0.553949 | 1.3:+21005974 | MS.gene95916:intron |
| CCAACCATTATGCAAAATCT+GGG | 0.553970 | 1.3:+20999035 | MS.gene95916:CDS |
| CTCAGATTGAAAGAAACGTT+AGG | 0.557712 | 1.3:-20996698 | None:intergenic |
| TACTGTAAGAAATGTTGTGA+AGG | 0.558571 | 1.3:+20990890 | MS.gene95916:CDS |
| TATTTGCAGTAAGCTCGACT+TGG | 0.560768 | 1.3:+21004558 | MS.gene95916:CDS |
| CTTGGTGCAGCAAGTGTGGA+TGG | 0.561232 | 1.3:+21007779 | MS.gene95916:CDS |
| GATTATGCCGTTCCATTCAG+TGG | 0.561418 | 1.3:+21008013 | MS.gene95916:CDS |
| AGTTGATAAGAAGCACAAGT+TGG | 0.564113 | 1.3:-20989856 | None:intergenic |
| CGTTGAACATCTCGAGAACA+AGG | 0.565812 | 1.3:-20988993 | None:intergenic |
| TGATGACCGAGTGAGGATGC+AGG | 0.565959 | 1.3:+20990647 | MS.gene95916:CDS |
| TTGCGGAAAGGACAAAGCAC+TGG | 0.567584 | 1.3:+20991135 | MS.gene95916:CDS |
| TCAAGCAATCAGAAAAGTCG+AGG | 0.568814 | 1.3:+21003898 | MS.gene95916:CDS |
| TTGCTATGATAAGGATTGCA+AGG | 0.568868 | 1.3:+20990967 | MS.gene95916:CDS |
| TTAACAACTCTTGTGCCTCT+CGG | 0.569157 | 1.3:+21004356 | MS.gene95916:CDS |
| AATTAGTACTTGTGCTCATG+AGG | 0.572015 | 1.3:+20989891 | MS.gene95916:CDS |
| GATATTTAGCAATTGAAGGT+GGG | 0.572916 | 1.3:-21007986 | None:intergenic |
| GTCTGAACTGCAAATATCAC+AGG | 0.573815 | 1.3:-20990682 | None:intergenic |
| TGATATTTAGCAATTGAAGG+TGG | 0.575603 | 1.3:-21007987 | None:intergenic |
| AGCATCTTTCTGTTGCGGAA+AGG | 0.576447 | 1.3:+20991123 | MS.gene95916:CDS |
| CAGAATCACTAGATGAAAGC+CGG | 0.577612 | 1.3:-21004777 | None:intergenic |
| TGGCGGTCTTCTTCAGCATG+GGG | 0.578280 | 1.3:+20988613 | MS.gene95916:CDS |
| TCGCAGACAAGCCAAATTTG+CGG | 0.579234 | 1.3:+20998394 | MS.gene95916:CDS |
| TCTTGTATTTATGACAGAGA+CGG | 0.583969 | 1.3:+20989949 | MS.gene95916:CDS |
| TGTGTGCAGTGAAAATGATA+AGG | 0.584117 | 1.3:+21002315 | MS.gene95916:intron |
| ATTGAGATTATAGCGATGGC+AGG | 0.584614 | 1.3:+20996674 | MS.gene95916:CDS |
| AGAGCTTGGTGCAGCAAGTG+TGG | 0.585217 | 1.3:+21007775 | MS.gene95916:intron |
| AAATGCTTGTCTTCAAAAGG+AGG | 0.585800 | 1.3:-20988701 | None:intergenic |
| CCGAGCCTTTCAGCATTGAG+GGG | 0.585990 | 1.3:-20996598 | None:intergenic |
| AAAGGTATCAAAATTTGCCG+TGG | 0.588101 | 1.3:-21004103 | None:intergenic |
| GGATGCCTAGCAGCCAAAGA+GGG | 0.591116 | 1.3:+21006871 | MS.gene95916:CDS |
| CAGCATCATTAACAAGCTCC+CGG | 0.592343 | 1.3:-21003853 | None:intergenic |
| GAAATGTTGTGAAGGAAGCA+TGG | 0.592659 | 1.3:+20990898 | MS.gene95916:CDS |
| GAATTTCAGATCCCAGAGCA+TGG | 0.595894 | 1.3:+20991070 | MS.gene95916:intron |
| TATCTTTCCAATGATGACGG+TGG | 0.597073 | 1.3:+20993985 | MS.gene95916:CDS |
| AACTGAATGTTCAGAACTCG+AGG | 0.602101 | 1.3:-20998432 | None:intergenic |
| GCTGATTGAGATTATAGCGA+TGG | 0.603646 | 1.3:+20996670 | MS.gene95916:CDS |
| TATTTATGACAGAGACGGCG+TGG | 0.610217 | 1.3:+20989954 | MS.gene95916:CDS |
| CACAGAAGGCAACTGCAACA+AGG | 0.613870 | 1.3:-21008049 | None:intergenic |
| GGTTATCATAATAGAAGACA+TGG | 0.614977 | 1.3:-20989428 | None:intergenic |
| TTGCGATCAAAATGGTGAAG+CGG | 0.617921 | 1.3:-21002417 | None:intergenic |
| AAAGATAATCTAAAACACAC+TGG | 0.621750 | 1.3:-20993969 | None:intergenic |
| CATTAATGTTCTGCTTCGTG+GGG | 0.624545 | 1.3:-21001006 | None:intergenic |
| AGCATTCTCCAATAAACAAG+TGG | 0.626337 | 1.3:-21004860 | None:intergenic |
| AGGATGCCTAGCAGCCAAAG+AGG | 0.626376 | 1.3:+21006870 | MS.gene95916:CDS |
| AGAATGATACGGGAAAATGA+TGG | 0.630687 | 1.3:+21001049 | MS.gene95916:CDS |
| AATGCAGAAGCTGCACAAGC+TGG | 0.634189 | 1.3:+21004018 | MS.gene95916:intron |
| TGACCAAATTCTCCGCGCGG+AGG | 0.637911 | 1.3:-20999306 | None:intergenic |
| GGTTAAAGTATTGGATACTG+TGG | 0.641308 | 1.3:+20988924 | MS.gene95916:CDS |
| ATTTATGACAGAGACGGCGT+GGG | 0.642216 | 1.3:+20989955 | MS.gene95916:CDS |
| CTAGTCAGAAGTTACACAGA+AGG | 0.644035 | 1.3:-21008063 | None:intergenic |
| CTTCATAAACCTGCTCGCAA+GGG | 0.644216 | 1.3:+21004505 | MS.gene95916:CDS |
| GAAGCCACTGATAGATGCTG+TGG | 0.646591 | 1.3:+20988586 | MS.gene95916:CDS |
| CTCACTCTATACAATGACAA+AGG | 0.649677 | 1.3:-21004121 | None:intergenic |
| TATACCGGGTGGAACTTACA+GGG | 0.649782 | 1.3:-21007856 | None:intergenic |
| ATAGATGCTGTGGTTTGTGG+CGG | 0.653066 | 1.3:+20988596 | MS.gene95916:CDS |
| AAGGAAACCACTGAATGGAA+CGG | 0.655413 | 1.3:-21008020 | None:intergenic |
| CATGAAACTTCTGTGCAACA+TGG | 0.656236 | 1.3:-20990293 | None:intergenic |
| TTGACTTTGATGACCGAGTG+AGG | 0.656661 | 1.3:+20990640 | MS.gene95916:CDS |
| GCCTGCAGGAGAAAGAAGAG+TGG | 0.659028 | 1.3:-21003800 | None:intergenic |
| GTTGATATCAGTAATGCTGA+TGG | 0.664565 | 1.3:+21003827 | MS.gene95916:CDS |
| AACAACTTCAAAGATACATG+TGG | 0.665571 | 1.3:+21004928 | MS.gene95916:CDS |
| TTTGAGCGAGGTGAGATCCA+TGG | 0.668375 | 1.3:-20987317 | None:intergenic |
| ATGTGCCAAAGCTGTCTATG+TGG | 0.669466 | 1.3:+20990383 | MS.gene95916:CDS |
| GTGTTGCTTATTAATGCTGG+AGG | 0.670131 | 1.3:+20988957 | MS.gene95916:CDS |
| TTTCTGTATCACAAGCCCCA+CGG | 0.672759 | 1.3:+21004086 | MS.gene95916:CDS |
| TCCAGGTTAAAAGAACGAGA+CGG | 0.680293 | 1.3:+21007939 | MS.gene95916:intron |
| CCAACTGATCCAGAATCAGA+CGG | 0.683014 | 1.3:-21004679 | None:intergenic |
| ATCGGAGATGAGTTTGAGCG+AGG | 0.686621 | 1.3:-20987329 | None:intergenic |
| AGTACACCAAAACATATGCA+GGG | 0.687009 | 1.3:-21003603 | None:intergenic |
| CTGAGAGCACTGATAATCTG+CGG | 0.688901 | 1.3:+21003115 | MS.gene95916:CDS |
| TATTTCCATCAACTTCTGTG+AGG | 0.695527 | 1.3:-20990858 | None:intergenic |
| TTATTTGAAAGATCTGCCAG+TGG | 0.697903 | 1.3:-21005990 | None:intergenic |
| GATACCCTGTAAGTTCCACC+CGG | 0.699517 | 1.3:+21007852 | MS.gene95916:CDS |
| AGGTATCAAAATTTGCCGTG+GGG | 0.699630 | 1.3:-21004101 | None:intergenic |
| CAAACCACAGCATCTATCAG+TGG | 0.707630 | 1.3:-20988590 | None:intergenic |
| CTTAGGAGCATAGGTCCGAG+AGG | 0.719753 | 1.3:-21004371 | None:intergenic |
| AATTGACCAAATTCTCCGCG+CGG | 0.724871 | 1.3:-20999309 | None:intergenic |
| GTATAGAGTGAGTCTCACCA+AGG | 0.741431 | 1.3:+21004132 | MS.gene95916:CDS |
| CTGAGATGTATCATGCGATG+AGG | 0.742334 | 1.3:-20999765 | None:intergenic |
| TTGTATGGTACCCCTCCGCG+CGG | 0.744544 | 1.3:+20999294 | MS.gene95916:CDS |
| ACTGATCCAGAATCAGACGG+AGG | 0.753799 | 1.3:-21004676 | None:intergenic |
| TGACCGAGTGAGGATGCAGG+CGG | 0.772188 | 1.3:+20990650 | MS.gene95916:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 20987319 | 21008085 | 20987319 | ID=MS.gene95916 |
| chr1.3 | mRNA | 20987319 | 21008085 | 20987319 | ID=MS.gene95916.t1;Parent=MS.gene95916 |
| chr1.3 | exon | 20987319 | 20987414 | 20987319 | ID=MS.gene95916.t1.exon1;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20987319 | 20987414 | 20987319 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20988494 | 20988727 | 20988494 | ID=MS.gene95916.t1.exon2;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20988494 | 20988727 | 20988494 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20988853 | 20989034 | 20988853 | ID=MS.gene95916.t1.exon3;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20988853 | 20989034 | 20988853 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20989399 | 20989525 | 20989399 | ID=MS.gene95916.t1.exon4;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20989399 | 20989525 | 20989399 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20989853 | 20990080 | 20989853 | ID=MS.gene95916.t1.exon5;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20989853 | 20990080 | 20989853 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20990225 | 20990441 | 20990225 | ID=MS.gene95916.t1.exon6;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20990225 | 20990441 | 20990225 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20990619 | 20990764 | 20990619 | ID=MS.gene95916.t1.exon7;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20990619 | 20990764 | 20990619 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20990839 | 20990996 | 20990839 | ID=MS.gene95916.t1.exon8;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20990839 | 20990996 | 20990839 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20991079 | 20991228 | 20991079 | ID=MS.gene95916.t1.exon9;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20991079 | 20991228 | 20991079 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20991299 | 20991347 | 20991299 | ID=MS.gene95916.t1.exon10;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20991299 | 20991347 | 20991299 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20992566 | 20992754 | 20992566 | ID=MS.gene95916.t1.exon11;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20992566 | 20992754 | 20992566 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20993868 | 20994038 | 20993868 | ID=MS.gene95916.t1.exon12;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20993868 | 20994038 | 20993868 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20996581 | 20996720 | 20996581 | ID=MS.gene95916.t1.exon13;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20996581 | 20996720 | 20996581 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20998352 | 20998472 | 20998352 | ID=MS.gene95916.t1.exon14;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20998352 | 20998472 | 20998352 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20998999 | 20999139 | 20998999 | ID=MS.gene95916.t1.exon15;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20998999 | 20999139 | 20998999 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20999261 | 20999335 | 20999261 | ID=MS.gene95916.t1.exon16;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20999261 | 20999335 | 20999261 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20999501 | 20999614 | 20999501 | ID=MS.gene95916.t1.exon17;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20999501 | 20999614 | 20999501 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 20999737 | 20999811 | 20999737 | ID=MS.gene95916.t1.exon18;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 20999737 | 20999811 | 20999737 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 21000956 | 21001083 | 21000956 | ID=MS.gene95916.t1.exon19;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 21000956 | 21001083 | 21000956 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 21002324 | 21002441 | 21002324 | ID=MS.gene95916.t1.exon20;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 21002324 | 21002441 | 21002324 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 21003009 | 21003143 | 21003009 | ID=MS.gene95916.t1.exon21;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 21003009 | 21003143 | 21003009 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 21003511 | 21003701 | 21003511 | ID=MS.gene95916.t1.exon22;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 21003511 | 21003701 | 21003511 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 21003799 | 21003946 | 21003799 | ID=MS.gene95916.t1.exon23;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 21003799 | 21003946 | 21003799 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 21004025 | 21004159 | 21004025 | ID=MS.gene95916.t1.exon24;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 21004025 | 21004159 | 21004025 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 21004292 | 21004393 | 21004292 | ID=MS.gene95916.t1.exon25;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 21004292 | 21004393 | 21004292 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 21004493 | 21004957 | 21004493 | ID=MS.gene95916.t1.exon26;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 21004493 | 21004957 | 21004493 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 21005981 | 21006030 | 21005981 | ID=MS.gene95916.t1.exon27;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 21005981 | 21006030 | 21005981 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 21006816 | 21006913 | 21006816 | ID=MS.gene95916.t1.exon28;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 21006816 | 21006913 | 21006816 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 21007777 | 21007873 | 21007777 | ID=MS.gene95916.t1.exon29;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 21007777 | 21007873 | 21007777 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| chr1.3 | exon | 21007944 | 21008085 | 21007944 | ID=MS.gene95916.t1.exon30;Parent=MS.gene95916.t1 |
| chr1.3 | CDS | 21007944 | 21008085 | 21007944 | ID=cds.MS.gene95916.t1;Parent=MS.gene95916.t1 |
| Gene Sequence |
| Protein sequence |
