Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96077.t1 | XP_013449302.1 | 96.9 | 420 | 10 | 2 | 1 | 419 | 1 | 418 | 1.50E-171 | 612.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96077.t1 | Q9LZX4 | 71.7 | 325 | 90 | 1 | 9 | 331 | 14 | 338 | 9.1e-125 | 448.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96077.t1 | A0A072U0Q0 | 96.9 | 420 | 10 | 2 | 1 | 419 | 1 | 418 | 1.1e-171 | 612.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049419 | MS.gene96077 | 0.844084 | 9.41E-59 | -1.69E-46 |
MS.gene050105 | MS.gene96077 | -0.814341 | 1.62E-51 | -1.69E-46 |
MS.gene051122 | MS.gene96077 | -0.827744 | 1.32E-54 | -1.69E-46 |
MS.gene051597 | MS.gene96077 | -0.829438 | 5.15E-55 | -1.69E-46 |
MS.gene053963 | MS.gene96077 | -0.808486 | 3.03E-50 | -1.69E-46 |
MS.gene056776 | MS.gene96077 | -0.801779 | 7.66E-49 | -1.69E-46 |
MS.gene056779 | MS.gene96077 | -0.806715 | 7.19E-50 | -1.69E-46 |
MS.gene057155 | MS.gene96077 | -0.820461 | 6.78E-53 | -1.69E-46 |
MS.gene058237 | MS.gene96077 | -0.801507 | 8.72E-49 | -1.69E-46 |
MS.gene060851 | MS.gene96077 | -0.80753 | 4.83E-50 | -1.69E-46 |
MS.gene060852 | MS.gene96077 | -0.808864 | 2.51E-50 | -1.69E-46 |
MS.gene060935 | MS.gene96077 | -0.800251 | 1.57E-48 | -1.69E-46 |
MS.gene060937 | MS.gene96077 | -0.811957 | 5.40E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene96077 | MS.gene004647 | PPI |
MS.gene073414 | MS.gene96077 | PPI |
MS.gene96077 | MS.gene00366 | PPI |
MS.gene96077 | MS.gene58643 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96077.t1 | MTR_7g075453 | 96.667 | 420 | 11 | 2 | 1 | 419 | 1 | 418 | 0.0 | 787 |
MS.gene96077.t1 | MTR_3g460780 | 45.631 | 309 | 165 | 3 | 20 | 326 | 29 | 336 | 2.66e-82 | 259 |
MS.gene96077.t1 | MTR_5g098420 | 43.505 | 331 | 173 | 5 | 5 | 326 | 13 | 338 | 3.02e-82 | 259 |
MS.gene96077.t1 | MTR_1g009950 | 42.857 | 175 | 96 | 2 | 1 | 172 | 1 | 174 | 2.23e-40 | 145 |
MS.gene96077.t1 | MTR_2g437700 | 32.647 | 340 | 211 | 11 | 6 | 330 | 12 | 348 | 9.06e-38 | 142 |
MS.gene96077.t1 | MTR_1g009940 | 37.288 | 177 | 107 | 2 | 1 | 174 | 1 | 176 | 2.05e-33 | 127 |
MS.gene96077.t1 | MTR_1g009910 | 37.288 | 177 | 107 | 2 | 1 | 174 | 1 | 176 | 1.42e-32 | 124 |
MS.gene96077.t1 | MTR_1g009920 | 36.250 | 160 | 96 | 3 | 1 | 155 | 1 | 159 | 7.49e-25 | 102 |
MS.gene96077.t1 | MTR_2g090765 | 31.401 | 207 | 132 | 3 | 160 | 356 | 12 | 218 | 1.85e-21 | 93.2 |
MS.gene96077.t1 | MTR_3g108760 | 30.723 | 166 | 110 | 2 | 6 | 171 | 9 | 169 | 3.02e-20 | 90.1 |
MS.gene96077.t1 | MTR_4g059840 | 32.222 | 180 | 117 | 2 | 176 | 350 | 66 | 245 | 3.35e-20 | 90.5 |
MS.gene96077.t1 | MTR_5g098060 | 34.444 | 180 | 104 | 6 | 182 | 355 | 47 | 218 | 6.37e-20 | 89.4 |
MS.gene96077.t1 | MTR_4g059790 | 31.111 | 180 | 119 | 2 | 176 | 350 | 66 | 245 | 1.30e-19 | 89.0 |
MS.gene96077.t1 | MTR_7g101080 | 34.177 | 158 | 99 | 3 | 175 | 327 | 32 | 189 | 1.35e-19 | 88.2 |
MS.gene96077.t1 | MTR_4g053380 | 32.022 | 178 | 106 | 3 | 176 | 343 | 70 | 242 | 1.42e-16 | 80.1 |
MS.gene96077.t1 | MTR_2g017950 | 33.140 | 172 | 91 | 5 | 170 | 325 | 61 | 224 | 3.27e-14 | 73.2 |
MS.gene96077.t1 | MTR_8g087470 | 32.571 | 175 | 99 | 5 | 164 | 325 | 74 | 242 | 4.73e-14 | 73.2 |
MS.gene96077.t1 | MTR_8g087460 | 32.571 | 175 | 99 | 5 | 164 | 325 | 74 | 242 | 5.96e-14 | 72.8 |
MS.gene96077.t1 | MTR_4g059720 | 29.091 | 165 | 100 | 4 | 175 | 327 | 31 | 190 | 7.59e-14 | 71.2 |
MS.gene96077.t1 | MTR_2g093990 | 28.758 | 153 | 95 | 3 | 183 | 326 | 41 | 188 | 2.15e-12 | 67.0 |
MS.gene96077.t1 | MTR_8g087450 | 31.447 | 159 | 94 | 3 | 174 | 322 | 68 | 221 | 2.67e-12 | 67.4 |
MS.gene96077.t1 | MTR_4g059780 | 30.058 | 173 | 104 | 4 | 168 | 328 | 73 | 240 | 3.06e-12 | 67.4 |
MS.gene96077.t1 | MTR_2g093980 | 29.825 | 171 | 103 | 4 | 170 | 328 | 54 | 219 | 4.72e-11 | 63.5 |
MS.gene96077.t1 | MTR_2g017970 | 28.177 | 181 | 114 | 4 | 183 | 353 | 68 | 242 | 9.17e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96077.t1 | AT3G60900 | 68.159 | 402 | 123 | 3 | 9 | 406 | 14 | 414 | 1.55e-177 | 502 |
MS.gene96077.t1 | AT2G45470 | 63.659 | 410 | 143 | 5 | 11 | 419 | 16 | 420 | 5.96e-168 | 478 |
MS.gene96077.t1 | AT4G12730 | 44.413 | 358 | 190 | 7 | 5 | 355 | 10 | 365 | 1.63e-88 | 274 |
MS.gene96077.t1 | AT5G55730 | 43.671 | 316 | 173 | 4 | 16 | 329 | 20 | 332 | 2.78e-82 | 259 |
MS.gene96077.t1 | AT5G55730 | 43.671 | 316 | 173 | 4 | 16 | 329 | 20 | 332 | 2.78e-82 | 259 |
MS.gene96077.t1 | AT3G12660 | 50.323 | 155 | 76 | 1 | 14 | 168 | 17 | 170 | 1.83e-41 | 147 |
MS.gene96077.t1 | AT2G24450 | 44.311 | 167 | 91 | 2 | 6 | 172 | 10 | 174 | 6.82e-35 | 130 |
MS.gene96077.t1 | AT3G46550 | 30.882 | 340 | 202 | 12 | 22 | 333 | 30 | 364 | 2.12e-31 | 124 |
MS.gene96077.t1 | AT4G31370 | 38.462 | 169 | 100 | 3 | 18 | 184 | 22 | 188 | 6.26e-27 | 109 |
MS.gene96077.t1 | AT5G03170 | 37.143 | 175 | 102 | 4 | 175 | 341 | 28 | 202 | 3.66e-26 | 106 |
MS.gene96077.t1 | AT2G20520 | 35.326 | 184 | 95 | 7 | 174 | 342 | 26 | 200 | 5.55e-20 | 89.0 |
MS.gene96077.t1 | AT2G04780 | 33.117 | 154 | 94 | 4 | 181 | 328 | 44 | 194 | 7.84e-19 | 85.9 |
MS.gene96077.t1 | AT2G04780 | 33.117 | 154 | 94 | 4 | 181 | 328 | 44 | 194 | 7.84e-19 | 85.9 |
MS.gene96077.t1 | AT5G60490 | 33.557 | 149 | 94 | 3 | 183 | 326 | 39 | 187 | 8.31e-19 | 85.9 |
MS.gene96077.t1 | AT1G03870 | 32.836 | 201 | 119 | 8 | 182 | 373 | 38 | 231 | 1.72e-17 | 82.0 |
MS.gene96077.t1 | AT5G44130 | 31.792 | 173 | 101 | 5 | 182 | 342 | 35 | 202 | 3.04e-17 | 81.3 |
Find 136 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGGATTTGTTTAACGGATT+TGG | 0.248067 | 7.4:-29912152 | None:intergenic |
TTTGAAAGCTTGGTTAAATC+TGG | 0.258664 | 7.4:-29912406 | None:intergenic |
GTTAACATCACCGACTTAAA+AGG | 0.279170 | 7.4:+29912073 | MS.gene96077:CDS |
CAAGCTTTCAAATGCTGAAT+TGG | 0.289600 | 7.4:+29912417 | MS.gene96077:CDS |
GTTGATTTCGTCGGCGAGTT+TGG | 0.289968 | 7.4:-29911837 | None:intergenic |
GAGAATTGCTGATACGGTTT+TGG | 0.305104 | 7.4:+29912606 | MS.gene96077:CDS |
TTTCAATCAACCGCTGATAA+AGG | 0.322266 | 7.4:+29912334 | MS.gene96077:CDS |
TTTCGTCGGCGAGTTTGGTT+TGG | 0.325132 | 7.4:-29911832 | None:intergenic |
GGAGAGGAAGGTGTTGTATT+GGG | 0.325835 | 7.4:-29911810 | None:intergenic |
GGTGTGAACGTGAAAGCTTC+TGG | 0.365284 | 7.4:+29912883 | MS.gene96077:CDS |
GATGTTGTTGACGGCGTTGC+CGG | 0.368716 | 7.4:-29912044 | None:intergenic |
GTGTTGTATTGGGAGTAGTC+GGG | 0.377757 | 7.4:-29911800 | None:intergenic |
CGGTGGAGCGGTGAGGATAC+CGG | 0.382681 | 7.4:-29912218 | None:intergenic |
GGGAGAGGAAGGTGTTGTAT+TGG | 0.383505 | 7.4:-29911811 | None:intergenic |
ATTGTAAGGGATTTGTTTAA+CGG | 0.389662 | 7.4:-29912158 | None:intergenic |
GCTTTAAAAGCTTCATCGTT+CGG | 0.391245 | 7.4:-29912373 | None:intergenic |
GCAGTCGACGGCGCATCAGC+TGG | 0.392326 | 7.4:-29912832 | None:intergenic |
GCCGGAGCCGGAGGCGAAGC+TGG | 0.399756 | 7.4:-29912781 | None:intergenic |
CAATTCAGCATTTGAAAGCT+TGG | 0.401045 | 7.4:-29912416 | None:intergenic |
GGTGTTGTATTGGGAGTAGT+CGG | 0.404765 | 7.4:-29911801 | None:intergenic |
GATAGGGTGGGAGGAGGTGA+TGG | 0.411423 | 7.4:-29911909 | None:intergenic |
TTCGTCGGCGAGTTTGGTTT+GGG | 0.412252 | 7.4:-29911831 | None:intergenic |
GCCAGCTTCGCCTCCGGCTC+CGG | 0.418334 | 7.4:+29912780 | MS.gene96077:CDS |
TTCGCCTCCGGCTCCGGCTC+CGG | 0.418334 | 7.4:+29912786 | MS.gene96077:CDS |
TCGAGGACGGAGATATTGTA+AGG | 0.421192 | 7.4:-29912172 | None:intergenic |
CGTTGCCGGTGGTTTGGAAG+AGG | 0.425548 | 7.4:-29912030 | None:intergenic |
GGACTAAGACGGTGATGGTT+TGG | 0.426408 | 7.4:-29911865 | None:intergenic |
TATTAAAGCGGTGAGGTTAA+CGG | 0.427878 | 7.4:-29912251 | None:intergenic |
GGGGTTGGAGGAGAGGATTT+CGG | 0.428919 | 7.4:-29911780 | None:intergenic |
GCATCAGCTGGAGCACCATC+TGG | 0.433541 | 7.4:-29912820 | None:intergenic |
ACTGCGGCGGAGAAGAGTTC+TGG | 0.441570 | 7.4:+29912850 | MS.gene96077:CDS |
TGACGGCGTTGCCGGTGGTT+TGG | 0.446971 | 7.4:-29912036 | None:intergenic |
GCACCAGCAGGCTCCGGTGC+CGG | 0.453273 | 7.4:-29912703 | None:intergenic |
GGTGGTTTGGAAGAGGGTGG+TGG | 0.455188 | 7.4:-29912023 | None:intergenic |
GGACTCTCACCAGCCGGAGC+CGG | 0.456408 | 7.4:-29912799 | None:intergenic |
TTGGGAGTAGTCGGGGTTGG+AGG | 0.460136 | 7.4:-29911792 | None:intergenic |
GTTGCCGGTGGTTTGGAAGA+GGG | 0.460606 | 7.4:-29912029 | None:intergenic |
GACTTAAAAGGCGGTAAAGT+CGG | 0.461657 | 7.4:+29912085 | MS.gene96077:CDS |
TACTTCACCTTCTCCGGCAC+CGG | 0.462547 | 7.4:+29912690 | MS.gene96077:CDS |
AACGGATCCGATGTTGTTGA+CGG | 0.462733 | 7.4:-29912053 | None:intergenic |
CCTCCGGCTCCGGCTCCGGC+TGG | 0.463306 | 7.4:+29912790 | MS.gene96077:CDS |
AGAGGATTTCGGTGATGTTG+TGG | 0.464601 | 7.4:-29911769 | None:intergenic |
GTTTGCTACTTCACCTTCTC+CGG | 0.464608 | 7.4:+29912684 | MS.gene96077:CDS |
AGTAGTCGAGGAGGACTAAG+AGG | 0.470428 | 7.4:-29911955 | None:intergenic |
TCTCCGGCACCGGAGCCTGC+TGG | 0.471174 | 7.4:+29912700 | MS.gene96077:CDS |
GGTGGAGCGGTGAGGATACC+GGG | 0.472678 | 7.4:-29912217 | None:intergenic |
AGTAGTCGGGGTTGGAGGAG+AGG | 0.477034 | 7.4:-29911787 | None:intergenic |
GGCGGAGATTGTGGTGGCGA+TGG | 0.477900 | 7.4:-29911747 | None:intergenic |
GAGGATTTCGGTGATGTTGT+GGG | 0.478105 | 7.4:-29911768 | None:intergenic |
GTATTGGGAGTAGTCGGGGT+TGG | 0.479082 | 7.4:-29911795 | None:intergenic |
GGTGGAGAGAGTGGTGCCAT+TGG | 0.480599 | 7.4:-29912005 | None:intergenic |
GAAGAGGGTGGTGGAGAGAG+TGG | 0.485135 | 7.4:-29912014 | None:intergenic |
ACCTGCTTCTGCTCCTTCAC+CGG | 0.486509 | 7.4:+29912738 | MS.gene96077:CDS |
AGTTTAGCTGCAAACGGTGC+CGG | 0.490029 | 7.4:+29912517 | MS.gene96077:CDS |
TGAGAAGGAGGATGAGAGAG+TGG | 0.492390 | 7.4:-29911718 | None:intergenic |
ATTTCTAGTTTAGCTGCAAA+CGG | 0.494895 | 7.4:+29912511 | MS.gene96077:CDS |
TCCATTGCCAGCTTCGCCTC+CGG | 0.495146 | 7.4:+29912774 | MS.gene96077:CDS |
CGGCGAGTTTGGTTTGGGAG+AGG | 0.496272 | 7.4:-29911826 | None:intergenic |
GGCTTCGGCTCCGCTGCTCC+CGG | 0.499991 | 7.4:+29912106 | MS.gene96077:CDS |
TCACCAGCCGGAGCCGGAGC+CGG | 0.504721 | 7.4:-29912793 | None:intergenic |
TGATAGTGTGCTTCTTCCAT+CGG | 0.504863 | 7.4:+29912657 | MS.gene96077:CDS |
AGCGGTGAGGTTAACGGAGG+AGG | 0.505875 | 7.4:-29912245 | None:intergenic |
TTCTTCGAGAATTGCTGATA+CGG | 0.508193 | 7.4:+29912600 | MS.gene96077:CDS |
GCCGGTGAAGGAGCAGAAGC+AGG | 0.510054 | 7.4:-29912739 | None:intergenic |
GTCGGTGAAGGAGCACCAGC+AGG | 0.511641 | 7.4:-29912715 | None:intergenic |
GCAGGCTCCGGTGCCGGAGA+AGG | 0.514781 | 7.4:-29912697 | None:intergenic |
GAAGGAGCACCAGCAGGCTC+CGG | 0.515834 | 7.4:-29912709 | None:intergenic |
CTCTTCTCCGCCGCAGTCGA+CGG | 0.518732 | 7.4:-29912844 | None:intergenic |
AGATGAGTCGAGTTTAGAGC+CGG | 0.520592 | 7.4:-29912125 | None:intergenic |
AAAGGCGGTAAAGTCGGCTT+CGG | 0.521698 | 7.4:+29912091 | MS.gene96077:CDS |
CGATGGAGAGGATGAGAAGG+AGG | 0.524116 | 7.4:-29911730 | None:intergenic |
TTGGCGGGAGTTGATTTCGT+CGG | 0.524457 | 7.4:-29911846 | None:intergenic |
CGAGGAGGACTAAGAGGGAG+AGG | 0.527333 | 7.4:-29911949 | None:intergenic |
AAGAGTTCTGGTAAATCTGC+TGG | 0.530173 | 7.4:+29912862 | MS.gene96077:CDS |
TTAACGGAGGAGGAAGGCGG+TGG | 0.530434 | 7.4:-29912235 | None:intergenic |
TGGTGCCATTGGTGAGTTGG+TGG | 0.531046 | 7.4:-29911994 | None:intergenic |
GCCGGAGGCGAAGCTGGCAA+TGG | 0.534845 | 7.4:-29912775 | None:intergenic |
GAGTTTGGTTTGGGAGAGGA+AGG | 0.536198 | 7.4:-29911822 | None:intergenic |
TGTAACAGAATCACCGGCAG+TGG | 0.540100 | 7.4:-29912560 | None:intergenic |
GACGGAGATAGGGTGGGAGG+AGG | 0.541655 | 7.4:-29911915 | None:intergenic |
CCAGCCGGAGCCGGAGCCGG+AGG | 0.542388 | 7.4:-29912790 | None:intergenic |
GAGTGGTGCCATTGGTGAGT+TGG | 0.544988 | 7.4:-29911997 | None:intergenic |
TGATCGGAGCTGTGATTTCG+AGG | 0.545737 | 7.4:-29912189 | None:intergenic |
CCATCTGGACTCTCACCAGC+CGG | 0.545959 | 7.4:-29912805 | None:intergenic |
GCAGAAGCAGGTGTCGGTGA+AGG | 0.547162 | 7.4:-29912727 | None:intergenic |
CTAAGACGGTGATGGTTTGG+CGG | 0.548620 | 7.4:-29911862 | None:intergenic |
GCTGCTAAATATCTTCCCAT+TGG | 0.550430 | 7.4:+29912463 | MS.gene96077:CDS |
TGGCGATGGAGAGGATGAGA+AGG | 0.551333 | 7.4:-29911733 | None:intergenic |
TGCTTCTGCTCCTTCACCGG+CGG | 0.552323 | 7.4:+29912741 | MS.gene96077:CDS |
TAAGACGGTGATGGTTTGGC+GGG | 0.555575 | 7.4:-29911861 | None:intergenic |
GATTACACTGTTACCACTGC+CGG | 0.557909 | 7.4:+29912547 | MS.gene96077:CDS |
GAGTTTAGAGCCGGGAGCAG+CGG | 0.559118 | 7.4:-29912116 | None:intergenic |
AGGATACCGGGAGCGATGAT+CGG | 0.559985 | 7.4:-29912205 | None:intergenic |
GATGTTGTGGGCGGAGATTG+TGG | 0.561060 | 7.4:-29911756 | None:intergenic |
GCATCGCTTATCTCATCCAA+CGG | 0.561376 | 7.4:+29912298 | MS.gene96077:CDS |
AAGAGAATGCGGCGTTGTTG+AGG | 0.561650 | 7.4:-29911886 | None:intergenic |
CCGGCTGGTGAGAGTCCAGA+TGG | 0.562214 | 7.4:+29912805 | MS.gene96077:CDS |
TGATGCGCCGTCGACTGCGG+CGG | 0.568393 | 7.4:+29912837 | MS.gene96077:CDS |
GGAGGAGGAAGGCGGTGGAG+CGG | 0.570170 | 7.4:-29912230 | None:intergenic |
GTAGGCGCATCCGCCGGTGA+AGG | 0.570599 | 7.4:-29912751 | None:intergenic |
AGCTGATGCGCCGTCGACTG+CGG | 0.570732 | 7.4:+29912834 | MS.gene96077:CDS |
GGCGAAGCTGGCAATGGAGT+AGG | 0.573463 | 7.4:-29912769 | None:intergenic |
ATGAAGTGTAACAGAATCAC+CGG | 0.576578 | 7.4:-29912566 | None:intergenic |
GAAGTAGCAAACAGCTCCGA+TGG | 0.576758 | 7.4:-29912673 | None:intergenic |
TGTTGTATTGGGAGTAGTCG+GGG | 0.579767 | 7.4:-29911799 | None:intergenic |
CGGAGCTGTGATTTCGAGGA+CGG | 0.584105 | 7.4:-29912185 | None:intergenic |
GTGAGGTTAACGGAGGAGGA+AGG | 0.588094 | 7.4:-29912241 | None:intergenic |
GTTGAGGACTAAGACGGTGA+TGG | 0.588296 | 7.4:-29911870 | None:intergenic |
CGAGGACGGAGATATTGTAA+GGG | 0.592002 | 7.4:-29912171 | None:intergenic |
AATGGAGTAGGCGCATCCGC+CGG | 0.593139 | 7.4:-29912757 | None:intergenic |
GATGAGTCGAGTTTAGAGCC+GGG | 0.594374 | 7.4:-29912124 | None:intergenic |
AGGAAGGCGGTGGAGCGGTG+AGG | 0.594409 | 7.4:-29912225 | None:intergenic |
TCAACAGAGTAAATAGCAAG+AGG | 0.595143 | 7.4:-29912637 | None:intergenic |
GATTCTGTTACACTTCATAC+CGG | 0.596215 | 7.4:+29912571 | MS.gene96077:CDS |
TAGTGTTGTCGAAGTAGTCG+AGG | 0.598199 | 7.4:-29911967 | None:intergenic |
ACCACCCTCTTCCAAACCAC+CGG | 0.602359 | 7.4:+29912025 | MS.gene96077:CDS |
ACAGCTCCGATCATCGCTCC+CGG | 0.603436 | 7.4:+29912199 | MS.gene96077:CDS |
GTTGTTGACGGCGTTGCCGG+TGG | 0.605559 | 7.4:-29912041 | None:intergenic |
AATCGTTAAACCTTTATCAG+CGG | 0.607866 | 7.4:-29912344 | None:intergenic |
AAACTCCACCAACTCACCAA+TGG | 0.611545 | 7.4:+29911989 | MS.gene96077:CDS |
TTTGACGACGGAGATAGGGT+GGG | 0.613696 | 7.4:-29911921 | None:intergenic |
GGCAACGCCGTCAACAACAT+CGG | 0.622693 | 7.4:+29912046 | MS.gene96077:CDS |
GTAGTCGAGGAGGACTAAGA+GGG | 0.625311 | 7.4:-29911954 | None:intergenic |
GAAGGAGCAGAAGCAGGTGT+CGG | 0.631537 | 7.4:-29912733 | None:intergenic |
GCCGGTGGTTTGGAAGAGGG+TGG | 0.634462 | 7.4:-29912026 | None:intergenic |
GACGACGGAGATAGGGTGGG+AGG | 0.635668 | 7.4:-29911918 | None:intergenic |
AGATTGTGGTGGCGATGGAG+AGG | 0.636808 | 7.4:-29911742 | None:intergenic |
GGAGGTGATGGAAGAGAATG+CGG | 0.642997 | 7.4:-29911897 | None:intergenic |
AGGTTAACGGAGGAGGAAGG+CGG | 0.656601 | 7.4:-29912238 | None:intergenic |
GATTTCGGTGATGTTGTGGG+CGG | 0.675153 | 7.4:-29911765 | None:intergenic |
AATTCTCGAAGAATCAACTC+CGG | 0.685415 | 7.4:-29912590 | None:intergenic |
AACATCACCGACTTAAAAGG+CGG | 0.699119 | 7.4:+29912076 | MS.gene96077:CDS |
TGTTGTCGAAGTAGTCGAGG+AGG | 0.701272 | 7.4:-29911964 | None:intergenic |
GTTGTGGGCGGAGATTGTGG+TGG | 0.702975 | 7.4:-29911753 | None:intergenic |
GGCGTTGTTGAGGACTAAGA+CGG | 0.713613 | 7.4:-29911876 | None:intergenic |
TAAAGCGGTGAGGTTAACGG+AGG | 0.741946 | 7.4:-29912248 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACAGTGTAATCAAATTTTC+CGG | - | chr7.4:29912539-29912558 | None:intergenic | 25.0% |
!! | ATTGTAAGGGATTTGTTTAA+CGG | - | chr7.4:29912161-29912180 | None:intergenic | 25.0% |
AATCGTTAAACCTTTATCAG+CGG | - | chr7.4:29912347-29912366 | None:intergenic | 30.0% | |
TTTGAAAGCTTGGTTAAATC+TGG | - | chr7.4:29912409-29912428 | None:intergenic | 30.0% | |
! | GTAGTTTTCAAAGATCCAAT+GGG | - | chr7.4:29912481-29912500 | None:intergenic | 30.0% |
!! | ATTTCTAGTTTAGCTGCAAA+CGG | + | chr7.4:29912511-29912530 | MS.gene96077:CDS | 30.0% |
!! | TTTTAAGTCGGTGATGTTAA+CGG | - | chr7.4:29912074-29912093 | None:intergenic | 30.0% |
!!! | AAACGTTTTGATTAAACCGT+TGG | - | chr7.4:29912317-29912336 | None:intergenic | 30.0% |
!!! | GATGAAGCTTTTAAAGCTAA+AGG | + | chr7.4:29912379-29912398 | MS.gene96077:CDS | 30.0% |
AATTCTCGAAGAATCAACTC+CGG | - | chr7.4:29912593-29912612 | None:intergenic | 35.0% | |
ACCGCTTTAATAGAAAAAGC+CGG | + | chr7.4:29912262-29912281 | MS.gene96077:CDS | 35.0% | |
ATGAAGTGTAACAGAATCAC+CGG | - | chr7.4:29912569-29912588 | None:intergenic | 35.0% | |
CAAGCTTTCAAATGCTGAAT+TGG | + | chr7.4:29912417-29912436 | MS.gene96077:CDS | 35.0% | |
CAATTCAGCATTTGAAAGCT+TGG | - | chr7.4:29912419-29912438 | None:intergenic | 35.0% | |
GATTCTGTTACACTTCATAC+CGG | + | chr7.4:29912571-29912590 | MS.gene96077:CDS | 35.0% | |
TATTAAAGCGGTGAGGTTAA+CGG | - | chr7.4:29912254-29912273 | None:intergenic | 35.0% | |
TCAACAGAGTAAATAGCAAG+AGG | - | chr7.4:29912640-29912659 | None:intergenic | 35.0% | |
TTCTTCGAGAATTGCTGATA+CGG | + | chr7.4:29912600-29912619 | MS.gene96077:CDS | 35.0% | |
TTTCAATCAACCGCTGATAA+AGG | + | chr7.4:29912334-29912353 | MS.gene96077:CDS | 35.0% | |
! | CGTAGTTTTCAAAGATCCAA+TGG | - | chr7.4:29912482-29912501 | None:intergenic | 35.0% |
! | CTTTTTCTATTAAAGCGGTG+AGG | - | chr7.4:29912261-29912280 | None:intergenic | 35.0% |
!! | ACCGGCTTTTTCTATTAAAG+CGG | - | chr7.4:29912266-29912285 | None:intergenic | 35.0% |
!! | AGGGATTTGTTTAACGGATT+TGG | - | chr7.4:29912155-29912174 | None:intergenic | 35.0% |
!! | GCTTTAAAAGCTTCATCGTT+CGG | - | chr7.4:29912376-29912395 | None:intergenic | 35.0% |
!! | GTTAACATCACCGACTTAAA+AGG | + | chr7.4:29912073-29912092 | MS.gene96077:CDS | 35.0% |
!!! | ATTTTTTTGACGACGGAGAT+AGG | - | chr7.4:29911929-29911948 | None:intergenic | 35.0% |
!!! | TTTTTTTGACGACGGAGATA+GGG | - | chr7.4:29911928-29911947 | None:intergenic | 35.0% |
GACTTAAAAGGCGGTAAAGT+CGG | + | chr7.4:29912085-29912104 | MS.gene96077:CDS | 40.0% | |
GCTGCTAAATATCTTCCCAT+TGG | + | chr7.4:29912463-29912482 | MS.gene96077:CDS | 40.0% | |
! | AAGAGTTCTGGTAAATCTGC+TGG | + | chr7.4:29912862-29912881 | MS.gene96077:CDS | 40.0% |
! | CGATGCAAATGTTTTGCAAC+CGG | - | chr7.4:29912284-29912303 | None:intergenic | 40.0% |
! | GAGAATTGCTGATACGGTTT+TGG | + | chr7.4:29912606-29912625 | MS.gene96077:CDS | 40.0% |
! | TGATAGTGTGCTTCTTCCAT+CGG | + | chr7.4:29912657-29912676 | MS.gene96077:CDS | 40.0% |
!! | AACATCACCGACTTAAAAGG+CGG | + | chr7.4:29912076-29912095 | MS.gene96077:CDS | 40.0% |
!! | GACTTTACCGCCTTTTAAGT+CGG | - | chr7.4:29912086-29912105 | None:intergenic | 40.0% |
!!! | GGAGAGGATTTTTTTGACGA+CGG | - | chr7.4:29911936-29911955 | None:intergenic | 40.0% |
AAACTCCACCAACTCACCAA+TGG | + | chr7.4:29911989-29912008 | MS.gene96077:CDS | 45.0% | |
AACGGATCCGATGTTGTTGA+CGG | - | chr7.4:29912056-29912075 | None:intergenic | 45.0% | |
AGAGGATTTCGGTGATGTTG+TGG | - | chr7.4:29911772-29911791 | None:intergenic | 45.0% | |
CGAGGACGGAGATATTGTAA+GGG | - | chr7.4:29912174-29912193 | None:intergenic | 45.0% | |
GAGGATTTCGGTGATGTTGT+GGG | - | chr7.4:29911771-29911790 | None:intergenic | 45.0% | |
GATTACACTGTTACCACTGC+CGG | + | chr7.4:29912547-29912566 | MS.gene96077:CDS | 45.0% | |
GCATCGCTTATCTCATCCAA+CGG | + | chr7.4:29912298-29912317 | MS.gene96077:CDS | 45.0% | |
GTGTTGTATTGGGAGTAGTC+GGG | - | chr7.4:29911803-29911822 | None:intergenic | 45.0% | |
TAGTGTTGTCGAAGTAGTCG+AGG | - | chr7.4:29911970-29911989 | None:intergenic | 45.0% | |
TCGAGGACGGAGATATTGTA+AGG | - | chr7.4:29912175-29912194 | None:intergenic | 45.0% | |
TGTTGTATTGGGAGTAGTCG+GGG | - | chr7.4:29911802-29911821 | None:intergenic | 45.0% | |
! | AGATGAGTCGAGTTTAGAGC+CGG | - | chr7.4:29912128-29912147 | None:intergenic | 45.0% |
! | GGTGTTGTATTGGGAGTAGT+CGG | - | chr7.4:29911804-29911823 | None:intergenic | 45.0% |
! | GTTTGCTACTTCACCTTCTC+CGG | + | chr7.4:29912684-29912703 | MS.gene96077:CDS | 45.0% |
!! | GACTGCTTTGTCTGCTTTTG+TGG | + | chr7.4:29912924-29912943 | MS.gene96077:CDS | 45.0% |
!! | GGAGAGGAAGGTGTTGTATT+GGG | - | chr7.4:29911813-29911832 | None:intergenic | 45.0% |
AAGAGAATGCGGCGTTGTTG+AGG | - | chr7.4:29911889-29911908 | None:intergenic | 50.0% | |
AGTAGTCGAGGAGGACTAAG+AGG | - | chr7.4:29911958-29911977 | None:intergenic | 50.0% | |
AGTTTAGCTGCAAACGGTGC+CGG | + | chr7.4:29912517-29912536 | MS.gene96077:CDS | 50.0% | |
GAAGTAGCAAACAGCTCCGA+TGG | - | chr7.4:29912676-29912695 | None:intergenic | 50.0% | |
GATTTCGGTGATGTTGTGGG+CGG | - | chr7.4:29911768-29911787 | None:intergenic | 50.0% | |
GGCGTTGTTGAGGACTAAGA+CGG | - | chr7.4:29911879-29911898 | None:intergenic | 50.0% | |
GGTGTGAACGTGAAAGCTTC+TGG | + | chr7.4:29912883-29912902 | MS.gene96077:CDS | 50.0% | |
GTAGTCGAGGAGGACTAAGA+GGG | - | chr7.4:29911957-29911976 | None:intergenic | 50.0% | |
GTTGAGGACTAAGACGGTGA+TGG | - | chr7.4:29911873-29911892 | None:intergenic | 50.0% | |
TAAAGCGGTGAGGTTAACGG+AGG | - | chr7.4:29912251-29912270 | None:intergenic | 50.0% | |
TGAGAAGGAGGATGAGAGAG+TGG | - | chr7.4:29911721-29911740 | None:intergenic | 50.0% | |
TGATCGGAGCTGTGATTTCG+AGG | - | chr7.4:29912192-29912211 | None:intergenic | 50.0% | |
TGTAACAGAATCACCGGCAG+TGG | - | chr7.4:29912563-29912582 | None:intergenic | 50.0% | |
TGTTGTCGAAGTAGTCGAGG+AGG | - | chr7.4:29911967-29911986 | None:intergenic | 50.0% | |
TTTCGTCGGCGAGTTTGGTT+TGG | - | chr7.4:29911835-29911854 | None:intergenic | 50.0% | |
TTTGACGACGGAGATAGGGT+GGG | - | chr7.4:29911924-29911943 | None:intergenic | 50.0% | |
! | AAAGGCGGTAAAGTCGGCTT+CGG | + | chr7.4:29912091-29912110 | MS.gene96077:CDS | 50.0% |
! | CTAAGACGGTGATGGTTTGG+CGG | - | chr7.4:29911865-29911884 | None:intergenic | 50.0% |
! | GATGAGTCGAGTTTAGAGCC+GGG | - | chr7.4:29912127-29912146 | None:intergenic | 50.0% |
! | GGACTAAGACGGTGATGGTT+TGG | - | chr7.4:29911868-29911887 | None:intergenic | 50.0% |
! | GTTGATTTCGTCGGCGAGTT+TGG | - | chr7.4:29911840-29911859 | None:intergenic | 50.0% |
! | TAAGACGGTGATGGTTTGGC+GGG | - | chr7.4:29911864-29911883 | None:intergenic | 50.0% |
! | TTCGTCGGCGAGTTTGGTTT+GGG | - | chr7.4:29911834-29911853 | None:intergenic | 50.0% |
! | TTGGCGGGAGTTGATTTCGT+CGG | - | chr7.4:29911849-29911868 | None:intergenic | 50.0% |
! | TTTTGACGACGGAGATAGGG+TGG | - | chr7.4:29911925-29911944 | None:intergenic | 50.0% |
!! | GAGTTTGGTTTGGGAGAGGA+AGG | - | chr7.4:29911825-29911844 | None:intergenic | 50.0% |
!! | GGAGGTGATGGAAGAGAATG+CGG | - | chr7.4:29911900-29911919 | None:intergenic | 50.0% |
!! | GGGAGAGGAAGGTGTTGTAT+TGG | - | chr7.4:29911814-29911833 | None:intergenic | 50.0% |
ACCACCCTCTTCCAAACCAC+CGG | + | chr7.4:29912025-29912044 | MS.gene96077:CDS | 55.0% | |
ACCTGCTTCTGCTCCTTCAC+CGG | + | chr7.4:29912738-29912757 | MS.gene96077:CDS | 55.0% | |
AGGATACCGGGAGCGATGAT+CGG | - | chr7.4:29912208-29912227 | None:intergenic | 55.0% | |
AGGTTAACGGAGGAGGAAGG+CGG | - | chr7.4:29912241-29912260 | None:intergenic | 55.0% | |
CGATGGAGAGGATGAGAAGG+AGG | - | chr7.4:29911733-29911752 | None:intergenic | 55.0% | |
CGGAGCTGTGATTTCGAGGA+CGG | - | chr7.4:29912188-29912207 | None:intergenic | 55.0% | |
GAAGGAGCAGAAGCAGGTGT+CGG | - | chr7.4:29912736-29912755 | None:intergenic | 55.0% | |
GATGTTGTGGGCGGAGATTG+TGG | - | chr7.4:29911759-29911778 | None:intergenic | 55.0% | |
GATGTTGTTGACGGCGTTGC+CGG | - | chr7.4:29912047-29912066 | None:intergenic | 55.0% | |
GGCAACGCCGTCAACAACAT+CGG | + | chr7.4:29912046-29912065 | MS.gene96077:CDS | 55.0% | |
GGGGTTGGAGGAGAGGATTT+CGG | - | chr7.4:29911783-29911802 | None:intergenic | 55.0% | |
GTATTGGGAGTAGTCGGGGT+TGG | - | chr7.4:29911798-29911817 | None:intergenic | 55.0% | |
GTGAGGTTAACGGAGGAGGA+AGG | - | chr7.4:29912244-29912263 | None:intergenic | 55.0% | |
TACTTCACCTTCTCCGGCAC+CGG | + | chr7.4:29912690-29912709 | MS.gene96077:CDS | 55.0% | |
TGGCGATGGAGAGGATGAGA+AGG | - | chr7.4:29911736-29911755 | None:intergenic | 55.0% | |
! | AGATTGTGGTGGCGATGGAG+AGG | - | chr7.4:29911745-29911764 | None:intergenic | 55.0% |
! | GTTGCCGGTGGTTTGGAAGA+GGG | - | chr7.4:29912032-29912051 | None:intergenic | 55.0% |
!! | GAGTGGTGCCATTGGTGAGT+TGG | - | chr7.4:29912000-29912019 | None:intergenic | 55.0% |
!! | TGGTGCCATTGGTGAGTTGG+TGG | - | chr7.4:29911997-29912016 | None:intergenic | 55.0% |
AATGGAGTAGGCGCATCCGC+CGG | - | chr7.4:29912760-29912779 | None:intergenic | 60.0% | |
ACAGCTCCGATCATCGCTCC+CGG | + | chr7.4:29912199-29912218 | MS.gene96077:CDS | 60.0% | |
ACTGCGGCGGAGAAGAGTTC+TGG | + | chr7.4:29912850-29912869 | MS.gene96077:CDS | 60.0% | |
AGCGGTGAGGTTAACGGAGG+AGG | - | chr7.4:29912248-29912267 | None:intergenic | 60.0% | |
AGTAGTCGGGGTTGGAGGAG+AGG | - | chr7.4:29911790-29911809 | None:intergenic | 60.0% | |
CCATCTGGACTCTCACCAGC+CGG | - | chr7.4:29912808-29912827 | None:intergenic | 60.0% | |
CGAGGAGGACTAAGAGGGAG+AGG | - | chr7.4:29911952-29911971 | None:intergenic | 60.0% | |
GATAGGGTGGGAGGAGGTGA+TGG | - | chr7.4:29911912-29911931 | None:intergenic | 60.0% | |
GGCGAAGCTGGCAATGGAGT+AGG | - | chr7.4:29912772-29912791 | None:intergenic | 60.0% | |
GTTGTGGGCGGAGATTGTGG+TGG | - | chr7.4:29911756-29911775 | None:intergenic | 60.0% | |
TCCATTGCCAGCTTCGCCTC+CGG | + | chr7.4:29912774-29912793 | MS.gene96077:CDS | 60.0% | |
TGCTTCTGCTCCTTCACCGG+CGG | + | chr7.4:29912741-29912760 | MS.gene96077:CDS | 60.0% | |
TTAACGGAGGAGGAAGGCGG+TGG | - | chr7.4:29912238-29912257 | None:intergenic | 60.0% | |
TTGGGAGTAGTCGGGGTTGG+AGG | - | chr7.4:29911795-29911814 | None:intergenic | 60.0% | |
! | CGTTGCCGGTGGTTTGGAAG+AGG | - | chr7.4:29912033-29912052 | None:intergenic | 60.0% |
! | GAGTTTAGAGCCGGGAGCAG+CGG | - | chr7.4:29912119-29912138 | None:intergenic | 60.0% |
! | GCATCAGCTGGAGCACCATC+TGG | - | chr7.4:29912823-29912842 | None:intergenic | 60.0% |
! | GGTGGTTTGGAAGAGGGTGG+TGG | - | chr7.4:29912026-29912045 | None:intergenic | 60.0% |
!! | CGGCGAGTTTGGTTTGGGAG+AGG | - | chr7.4:29911829-29911848 | None:intergenic | 60.0% |
!! | GAAGAGGGTGGTGGAGAGAG+TGG | - | chr7.4:29912017-29912036 | None:intergenic | 60.0% |
!! | GCAGAAGCAGGTGTCGGTGA+AGG | - | chr7.4:29912730-29912749 | None:intergenic | 60.0% |
!! | GGTGGAGAGAGTGGTGCCAT+TGG | - | chr7.4:29912008-29912027 | None:intergenic | 60.0% |
CCGGCTGGTGAGAGTCCAGA+TGG | + | chr7.4:29912805-29912824 | MS.gene96077:CDS | 65.0% | |
CGGTGGAGCGGTGAGGATAC+CGG | - | chr7.4:29912221-29912240 | None:intergenic | 65.0% | |
CTCTTCTCCGCCGCAGTCGA+CGG | - | chr7.4:29912847-29912866 | None:intergenic | 65.0% | |
GACGACGGAGATAGGGTGGG+AGG | - | chr7.4:29911921-29911940 | None:intergenic | 65.0% | |
GACGGAGATAGGGTGGGAGG+AGG | - | chr7.4:29911918-29911937 | None:intergenic | 65.0% | |
GCCGGTGAAGGAGCAGAAGC+AGG | - | chr7.4:29912742-29912761 | None:intergenic | 65.0% | |
GGTGGAGCGGTGAGGATACC+GGG | - | chr7.4:29912220-29912239 | None:intergenic | 65.0% | |
GTTGTTGACGGCGTTGCCGG+TGG | - | chr7.4:29912044-29912063 | None:intergenic | 65.0% | |
TGACGGCGTTGCCGGTGGTT+TGG | - | chr7.4:29912039-29912058 | None:intergenic | 65.0% | |
! | AGCTGATGCGCCGTCGACTG+CGG | + | chr7.4:29912834-29912853 | MS.gene96077:CDS | 65.0% |
! | GCCGGTGGTTTGGAAGAGGG+TGG | - | chr7.4:29912029-29912048 | None:intergenic | 65.0% |
! | GGCGGAGATTGTGGTGGCGA+TGG | - | chr7.4:29911750-29911769 | None:intergenic | 65.0% |
!! | GAAGGAGCACCAGCAGGCTC+CGG | - | chr7.4:29912712-29912731 | None:intergenic | 65.0% |
!! | GTCGGTGAAGGAGCACCAGC+AGG | - | chr7.4:29912718-29912737 | None:intergenic | 65.0% |
AGGAAGGCGGTGGAGCGGTG+AGG | - | chr7.4:29912228-29912247 | None:intergenic | 70.0% | |
GCAGTCGACGGCGCATCAGC+TGG | - | chr7.4:29912835-29912854 | None:intergenic | 70.0% | |
GCCGGAGGCGAAGCTGGCAA+TGG | - | chr7.4:29912778-29912797 | None:intergenic | 70.0% | |
GGACTCTCACCAGCCGGAGC+CGG | - | chr7.4:29912802-29912821 | None:intergenic | 70.0% | |
GGAGGAGGAAGGCGGTGGAG+CGG | - | chr7.4:29912233-29912252 | None:intergenic | 70.0% | |
GTAGGCGCATCCGCCGGTGA+AGG | - | chr7.4:29912754-29912773 | None:intergenic | 70.0% | |
! | TGATGCGCCGTCGACTGCGG+CGG | + | chr7.4:29912837-29912856 | MS.gene96077:CDS | 70.0% |
GCACCAGCAGGCTCCGGTGC+CGG | - | chr7.4:29912706-29912725 | None:intergenic | 75.0% | |
GCCAGCTTCGCCTCCGGCTC+CGG | + | chr7.4:29912780-29912799 | MS.gene96077:CDS | 75.0% | |
GGCTTCGGCTCCGCTGCTCC+CGG | + | chr7.4:29912106-29912125 | MS.gene96077:CDS | 75.0% | |
TCACCAGCCGGAGCCGGAGC+CGG | - | chr7.4:29912796-29912815 | None:intergenic | 75.0% | |
TTCGCCTCCGGCTCCGGCTC+CGG | + | chr7.4:29912786-29912805 | MS.gene96077:CDS | 75.0% | |
! | GCAGGCTCCGGTGCCGGAGA+AGG | - | chr7.4:29912700-29912719 | None:intergenic | 75.0% |
! | TCTCCGGCACCGGAGCCTGC+TGG | + | chr7.4:29912700-29912719 | MS.gene96077:CDS | 75.0% |
! | GCCGGAGCCGGAGGCGAAGC+TGG | - | chr7.4:29912784-29912803 | None:intergenic | 80.0% |
! | CCAGCCGGAGCCGGAGCCGG+AGG | - | chr7.4:29912793-29912812 | None:intergenic | 85.0% |
! | CCTCCGGCTCCGGCTCCGGC+TGG | + | chr7.4:29912790-29912809 | MS.gene96077:CDS | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 29911710 | 29912969 | 29911710 | ID=MS.gene96077 |
chr7.4 | mRNA | 29911710 | 29912969 | 29911710 | ID=MS.gene96077.t1;Parent=MS.gene96077 |
chr7.4 | exon | 29911710 | 29912969 | 29911710 | ID=MS.gene96077.t1.exon1;Parent=MS.gene96077.t1 |
chr7.4 | CDS | 29911710 | 29912969 | 29911710 | ID=cds.MS.gene96077.t1;Parent=MS.gene96077.t1 |
Gene Sequence |
Protein sequence |