AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96077


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96077.t1 MTR_7g075453 96.667 420 11 2 1 419 1 418 0.0 787
MS.gene96077.t1 MTR_3g460780 45.631 309 165 3 20 326 29 336 2.66e-82 259
MS.gene96077.t1 MTR_5g098420 43.505 331 173 5 5 326 13 338 3.02e-82 259
MS.gene96077.t1 MTR_1g009950 42.857 175 96 2 1 172 1 174 2.23e-40 145
MS.gene96077.t1 MTR_2g437700 32.647 340 211 11 6 330 12 348 9.06e-38 142
MS.gene96077.t1 MTR_1g009940 37.288 177 107 2 1 174 1 176 2.05e-33 127
MS.gene96077.t1 MTR_1g009910 37.288 177 107 2 1 174 1 176 1.42e-32 124
MS.gene96077.t1 MTR_1g009920 36.250 160 96 3 1 155 1 159 7.49e-25 102
MS.gene96077.t1 MTR_2g090765 31.401 207 132 3 160 356 12 218 1.85e-21 93.2
MS.gene96077.t1 MTR_3g108760 30.723 166 110 2 6 171 9 169 3.02e-20 90.1
MS.gene96077.t1 MTR_4g059840 32.222 180 117 2 176 350 66 245 3.35e-20 90.5
MS.gene96077.t1 MTR_5g098060 34.444 180 104 6 182 355 47 218 6.37e-20 89.4
MS.gene96077.t1 MTR_4g059790 31.111 180 119 2 176 350 66 245 1.30e-19 89.0
MS.gene96077.t1 MTR_7g101080 34.177 158 99 3 175 327 32 189 1.35e-19 88.2
MS.gene96077.t1 MTR_4g053380 32.022 178 106 3 176 343 70 242 1.42e-16 80.1
MS.gene96077.t1 MTR_2g017950 33.140 172 91 5 170 325 61 224 3.27e-14 73.2
MS.gene96077.t1 MTR_8g087470 32.571 175 99 5 164 325 74 242 4.73e-14 73.2
MS.gene96077.t1 MTR_8g087460 32.571 175 99 5 164 325 74 242 5.96e-14 72.8
MS.gene96077.t1 MTR_4g059720 29.091 165 100 4 175 327 31 190 7.59e-14 71.2
MS.gene96077.t1 MTR_2g093990 28.758 153 95 3 183 326 41 188 2.15e-12 67.0
MS.gene96077.t1 MTR_8g087450 31.447 159 94 3 174 322 68 221 2.67e-12 67.4
MS.gene96077.t1 MTR_4g059780 30.058 173 104 4 168 328 73 240 3.06e-12 67.4
MS.gene96077.t1 MTR_2g093980 29.825 171 103 4 170 328 54 219 4.72e-11 63.5
MS.gene96077.t1 MTR_2g017970 28.177 181 114 4 183 353 68 242 9.17e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96077.t1 AT3G60900 68.159 402 123 3 9 406 14 414 1.55e-177 502
MS.gene96077.t1 AT2G45470 63.659 410 143 5 11 419 16 420 5.96e-168 478
MS.gene96077.t1 AT4G12730 44.413 358 190 7 5 355 10 365 1.63e-88 274
MS.gene96077.t1 AT5G55730 43.671 316 173 4 16 329 20 332 2.78e-82 259
MS.gene96077.t1 AT5G55730 43.671 316 173 4 16 329 20 332 2.78e-82 259
MS.gene96077.t1 AT3G12660 50.323 155 76 1 14 168 17 170 1.83e-41 147
MS.gene96077.t1 AT2G24450 44.311 167 91 2 6 172 10 174 6.82e-35 130
MS.gene96077.t1 AT3G46550 30.882 340 202 12 22 333 30 364 2.12e-31 124
MS.gene96077.t1 AT4G31370 38.462 169 100 3 18 184 22 188 6.26e-27 109
MS.gene96077.t1 AT5G03170 37.143 175 102 4 175 341 28 202 3.66e-26 106
MS.gene96077.t1 AT2G20520 35.326 184 95 7 174 342 26 200 5.55e-20 89.0
MS.gene96077.t1 AT2G04780 33.117 154 94 4 181 328 44 194 7.84e-19 85.9
MS.gene96077.t1 AT2G04780 33.117 154 94 4 181 328 44 194 7.84e-19 85.9
MS.gene96077.t1 AT5G60490 33.557 149 94 3 183 326 39 187 8.31e-19 85.9
MS.gene96077.t1 AT1G03870 32.836 201 119 8 182 373 38 231 1.72e-17 82.0
MS.gene96077.t1 AT5G44130 31.792 173 101 5 182 342 35 202 3.04e-17 81.3

Find 136 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGATTTGTTTAACGGATT+TGG 0.248067 7.4:-29912152 None:intergenic
TTTGAAAGCTTGGTTAAATC+TGG 0.258664 7.4:-29912406 None:intergenic
GTTAACATCACCGACTTAAA+AGG 0.279170 7.4:+29912073 MS.gene96077:CDS
CAAGCTTTCAAATGCTGAAT+TGG 0.289600 7.4:+29912417 MS.gene96077:CDS
GTTGATTTCGTCGGCGAGTT+TGG 0.289968 7.4:-29911837 None:intergenic
GAGAATTGCTGATACGGTTT+TGG 0.305104 7.4:+29912606 MS.gene96077:CDS
TTTCAATCAACCGCTGATAA+AGG 0.322266 7.4:+29912334 MS.gene96077:CDS
TTTCGTCGGCGAGTTTGGTT+TGG 0.325132 7.4:-29911832 None:intergenic
GGAGAGGAAGGTGTTGTATT+GGG 0.325835 7.4:-29911810 None:intergenic
GGTGTGAACGTGAAAGCTTC+TGG 0.365284 7.4:+29912883 MS.gene96077:CDS
GATGTTGTTGACGGCGTTGC+CGG 0.368716 7.4:-29912044 None:intergenic
GTGTTGTATTGGGAGTAGTC+GGG 0.377757 7.4:-29911800 None:intergenic
CGGTGGAGCGGTGAGGATAC+CGG 0.382681 7.4:-29912218 None:intergenic
GGGAGAGGAAGGTGTTGTAT+TGG 0.383505 7.4:-29911811 None:intergenic
ATTGTAAGGGATTTGTTTAA+CGG 0.389662 7.4:-29912158 None:intergenic
GCTTTAAAAGCTTCATCGTT+CGG 0.391245 7.4:-29912373 None:intergenic
GCAGTCGACGGCGCATCAGC+TGG 0.392326 7.4:-29912832 None:intergenic
GCCGGAGCCGGAGGCGAAGC+TGG 0.399756 7.4:-29912781 None:intergenic
CAATTCAGCATTTGAAAGCT+TGG 0.401045 7.4:-29912416 None:intergenic
GGTGTTGTATTGGGAGTAGT+CGG 0.404765 7.4:-29911801 None:intergenic
GATAGGGTGGGAGGAGGTGA+TGG 0.411423 7.4:-29911909 None:intergenic
TTCGTCGGCGAGTTTGGTTT+GGG 0.412252 7.4:-29911831 None:intergenic
GCCAGCTTCGCCTCCGGCTC+CGG 0.418334 7.4:+29912780 MS.gene96077:CDS
TTCGCCTCCGGCTCCGGCTC+CGG 0.418334 7.4:+29912786 MS.gene96077:CDS
TCGAGGACGGAGATATTGTA+AGG 0.421192 7.4:-29912172 None:intergenic
CGTTGCCGGTGGTTTGGAAG+AGG 0.425548 7.4:-29912030 None:intergenic
GGACTAAGACGGTGATGGTT+TGG 0.426408 7.4:-29911865 None:intergenic
TATTAAAGCGGTGAGGTTAA+CGG 0.427878 7.4:-29912251 None:intergenic
GGGGTTGGAGGAGAGGATTT+CGG 0.428919 7.4:-29911780 None:intergenic
GCATCAGCTGGAGCACCATC+TGG 0.433541 7.4:-29912820 None:intergenic
ACTGCGGCGGAGAAGAGTTC+TGG 0.441570 7.4:+29912850 MS.gene96077:CDS
TGACGGCGTTGCCGGTGGTT+TGG 0.446971 7.4:-29912036 None:intergenic
GCACCAGCAGGCTCCGGTGC+CGG 0.453273 7.4:-29912703 None:intergenic
GGTGGTTTGGAAGAGGGTGG+TGG 0.455188 7.4:-29912023 None:intergenic
GGACTCTCACCAGCCGGAGC+CGG 0.456408 7.4:-29912799 None:intergenic
TTGGGAGTAGTCGGGGTTGG+AGG 0.460136 7.4:-29911792 None:intergenic
GTTGCCGGTGGTTTGGAAGA+GGG 0.460606 7.4:-29912029 None:intergenic
GACTTAAAAGGCGGTAAAGT+CGG 0.461657 7.4:+29912085 MS.gene96077:CDS
TACTTCACCTTCTCCGGCAC+CGG 0.462547 7.4:+29912690 MS.gene96077:CDS
AACGGATCCGATGTTGTTGA+CGG 0.462733 7.4:-29912053 None:intergenic
CCTCCGGCTCCGGCTCCGGC+TGG 0.463306 7.4:+29912790 MS.gene96077:CDS
AGAGGATTTCGGTGATGTTG+TGG 0.464601 7.4:-29911769 None:intergenic
GTTTGCTACTTCACCTTCTC+CGG 0.464608 7.4:+29912684 MS.gene96077:CDS
AGTAGTCGAGGAGGACTAAG+AGG 0.470428 7.4:-29911955 None:intergenic
TCTCCGGCACCGGAGCCTGC+TGG 0.471174 7.4:+29912700 MS.gene96077:CDS
GGTGGAGCGGTGAGGATACC+GGG 0.472678 7.4:-29912217 None:intergenic
AGTAGTCGGGGTTGGAGGAG+AGG 0.477034 7.4:-29911787 None:intergenic
GGCGGAGATTGTGGTGGCGA+TGG 0.477900 7.4:-29911747 None:intergenic
GAGGATTTCGGTGATGTTGT+GGG 0.478105 7.4:-29911768 None:intergenic
GTATTGGGAGTAGTCGGGGT+TGG 0.479082 7.4:-29911795 None:intergenic
GGTGGAGAGAGTGGTGCCAT+TGG 0.480599 7.4:-29912005 None:intergenic
GAAGAGGGTGGTGGAGAGAG+TGG 0.485135 7.4:-29912014 None:intergenic
ACCTGCTTCTGCTCCTTCAC+CGG 0.486509 7.4:+29912738 MS.gene96077:CDS
AGTTTAGCTGCAAACGGTGC+CGG 0.490029 7.4:+29912517 MS.gene96077:CDS
TGAGAAGGAGGATGAGAGAG+TGG 0.492390 7.4:-29911718 None:intergenic
ATTTCTAGTTTAGCTGCAAA+CGG 0.494895 7.4:+29912511 MS.gene96077:CDS
TCCATTGCCAGCTTCGCCTC+CGG 0.495146 7.4:+29912774 MS.gene96077:CDS
CGGCGAGTTTGGTTTGGGAG+AGG 0.496272 7.4:-29911826 None:intergenic
GGCTTCGGCTCCGCTGCTCC+CGG 0.499991 7.4:+29912106 MS.gene96077:CDS
TCACCAGCCGGAGCCGGAGC+CGG 0.504721 7.4:-29912793 None:intergenic
TGATAGTGTGCTTCTTCCAT+CGG 0.504863 7.4:+29912657 MS.gene96077:CDS
AGCGGTGAGGTTAACGGAGG+AGG 0.505875 7.4:-29912245 None:intergenic
TTCTTCGAGAATTGCTGATA+CGG 0.508193 7.4:+29912600 MS.gene96077:CDS
GCCGGTGAAGGAGCAGAAGC+AGG 0.510054 7.4:-29912739 None:intergenic
GTCGGTGAAGGAGCACCAGC+AGG 0.511641 7.4:-29912715 None:intergenic
GCAGGCTCCGGTGCCGGAGA+AGG 0.514781 7.4:-29912697 None:intergenic
GAAGGAGCACCAGCAGGCTC+CGG 0.515834 7.4:-29912709 None:intergenic
CTCTTCTCCGCCGCAGTCGA+CGG 0.518732 7.4:-29912844 None:intergenic
AGATGAGTCGAGTTTAGAGC+CGG 0.520592 7.4:-29912125 None:intergenic
AAAGGCGGTAAAGTCGGCTT+CGG 0.521698 7.4:+29912091 MS.gene96077:CDS
CGATGGAGAGGATGAGAAGG+AGG 0.524116 7.4:-29911730 None:intergenic
TTGGCGGGAGTTGATTTCGT+CGG 0.524457 7.4:-29911846 None:intergenic
CGAGGAGGACTAAGAGGGAG+AGG 0.527333 7.4:-29911949 None:intergenic
AAGAGTTCTGGTAAATCTGC+TGG 0.530173 7.4:+29912862 MS.gene96077:CDS
TTAACGGAGGAGGAAGGCGG+TGG 0.530434 7.4:-29912235 None:intergenic
TGGTGCCATTGGTGAGTTGG+TGG 0.531046 7.4:-29911994 None:intergenic
GCCGGAGGCGAAGCTGGCAA+TGG 0.534845 7.4:-29912775 None:intergenic
GAGTTTGGTTTGGGAGAGGA+AGG 0.536198 7.4:-29911822 None:intergenic
TGTAACAGAATCACCGGCAG+TGG 0.540100 7.4:-29912560 None:intergenic
GACGGAGATAGGGTGGGAGG+AGG 0.541655 7.4:-29911915 None:intergenic
CCAGCCGGAGCCGGAGCCGG+AGG 0.542388 7.4:-29912790 None:intergenic
GAGTGGTGCCATTGGTGAGT+TGG 0.544988 7.4:-29911997 None:intergenic
TGATCGGAGCTGTGATTTCG+AGG 0.545737 7.4:-29912189 None:intergenic
CCATCTGGACTCTCACCAGC+CGG 0.545959 7.4:-29912805 None:intergenic
GCAGAAGCAGGTGTCGGTGA+AGG 0.547162 7.4:-29912727 None:intergenic
CTAAGACGGTGATGGTTTGG+CGG 0.548620 7.4:-29911862 None:intergenic
GCTGCTAAATATCTTCCCAT+TGG 0.550430 7.4:+29912463 MS.gene96077:CDS
TGGCGATGGAGAGGATGAGA+AGG 0.551333 7.4:-29911733 None:intergenic
TGCTTCTGCTCCTTCACCGG+CGG 0.552323 7.4:+29912741 MS.gene96077:CDS
TAAGACGGTGATGGTTTGGC+GGG 0.555575 7.4:-29911861 None:intergenic
GATTACACTGTTACCACTGC+CGG 0.557909 7.4:+29912547 MS.gene96077:CDS
GAGTTTAGAGCCGGGAGCAG+CGG 0.559118 7.4:-29912116 None:intergenic
AGGATACCGGGAGCGATGAT+CGG 0.559985 7.4:-29912205 None:intergenic
GATGTTGTGGGCGGAGATTG+TGG 0.561060 7.4:-29911756 None:intergenic
GCATCGCTTATCTCATCCAA+CGG 0.561376 7.4:+29912298 MS.gene96077:CDS
AAGAGAATGCGGCGTTGTTG+AGG 0.561650 7.4:-29911886 None:intergenic
CCGGCTGGTGAGAGTCCAGA+TGG 0.562214 7.4:+29912805 MS.gene96077:CDS
TGATGCGCCGTCGACTGCGG+CGG 0.568393 7.4:+29912837 MS.gene96077:CDS
GGAGGAGGAAGGCGGTGGAG+CGG 0.570170 7.4:-29912230 None:intergenic
GTAGGCGCATCCGCCGGTGA+AGG 0.570599 7.4:-29912751 None:intergenic
AGCTGATGCGCCGTCGACTG+CGG 0.570732 7.4:+29912834 MS.gene96077:CDS
GGCGAAGCTGGCAATGGAGT+AGG 0.573463 7.4:-29912769 None:intergenic
ATGAAGTGTAACAGAATCAC+CGG 0.576578 7.4:-29912566 None:intergenic
GAAGTAGCAAACAGCTCCGA+TGG 0.576758 7.4:-29912673 None:intergenic
TGTTGTATTGGGAGTAGTCG+GGG 0.579767 7.4:-29911799 None:intergenic
CGGAGCTGTGATTTCGAGGA+CGG 0.584105 7.4:-29912185 None:intergenic
GTGAGGTTAACGGAGGAGGA+AGG 0.588094 7.4:-29912241 None:intergenic
GTTGAGGACTAAGACGGTGA+TGG 0.588296 7.4:-29911870 None:intergenic
CGAGGACGGAGATATTGTAA+GGG 0.592002 7.4:-29912171 None:intergenic
AATGGAGTAGGCGCATCCGC+CGG 0.593139 7.4:-29912757 None:intergenic
GATGAGTCGAGTTTAGAGCC+GGG 0.594374 7.4:-29912124 None:intergenic
AGGAAGGCGGTGGAGCGGTG+AGG 0.594409 7.4:-29912225 None:intergenic
TCAACAGAGTAAATAGCAAG+AGG 0.595143 7.4:-29912637 None:intergenic
GATTCTGTTACACTTCATAC+CGG 0.596215 7.4:+29912571 MS.gene96077:CDS
TAGTGTTGTCGAAGTAGTCG+AGG 0.598199 7.4:-29911967 None:intergenic
ACCACCCTCTTCCAAACCAC+CGG 0.602359 7.4:+29912025 MS.gene96077:CDS
ACAGCTCCGATCATCGCTCC+CGG 0.603436 7.4:+29912199 MS.gene96077:CDS
GTTGTTGACGGCGTTGCCGG+TGG 0.605559 7.4:-29912041 None:intergenic
AATCGTTAAACCTTTATCAG+CGG 0.607866 7.4:-29912344 None:intergenic
AAACTCCACCAACTCACCAA+TGG 0.611545 7.4:+29911989 MS.gene96077:CDS
TTTGACGACGGAGATAGGGT+GGG 0.613696 7.4:-29911921 None:intergenic
GGCAACGCCGTCAACAACAT+CGG 0.622693 7.4:+29912046 MS.gene96077:CDS
GTAGTCGAGGAGGACTAAGA+GGG 0.625311 7.4:-29911954 None:intergenic
GAAGGAGCAGAAGCAGGTGT+CGG 0.631537 7.4:-29912733 None:intergenic
GCCGGTGGTTTGGAAGAGGG+TGG 0.634462 7.4:-29912026 None:intergenic
GACGACGGAGATAGGGTGGG+AGG 0.635668 7.4:-29911918 None:intergenic
AGATTGTGGTGGCGATGGAG+AGG 0.636808 7.4:-29911742 None:intergenic
GGAGGTGATGGAAGAGAATG+CGG 0.642997 7.4:-29911897 None:intergenic
AGGTTAACGGAGGAGGAAGG+CGG 0.656601 7.4:-29912238 None:intergenic
GATTTCGGTGATGTTGTGGG+CGG 0.675153 7.4:-29911765 None:intergenic
AATTCTCGAAGAATCAACTC+CGG 0.685415 7.4:-29912590 None:intergenic
AACATCACCGACTTAAAAGG+CGG 0.699119 7.4:+29912076 MS.gene96077:CDS
TGTTGTCGAAGTAGTCGAGG+AGG 0.701272 7.4:-29911964 None:intergenic
GTTGTGGGCGGAGATTGTGG+TGG 0.702975 7.4:-29911753 None:intergenic
GGCGTTGTTGAGGACTAAGA+CGG 0.713613 7.4:-29911876 None:intergenic
TAAAGCGGTGAGGTTAACGG+AGG 0.741946 7.4:-29912248 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAGTGTAATCAAATTTTC+CGG - chr7.4:29912539-29912558 None:intergenic 25.0%
!! ATTGTAAGGGATTTGTTTAA+CGG - chr7.4:29912161-29912180 None:intergenic 25.0%
AATCGTTAAACCTTTATCAG+CGG - chr7.4:29912347-29912366 None:intergenic 30.0%
TTTGAAAGCTTGGTTAAATC+TGG - chr7.4:29912409-29912428 None:intergenic 30.0%
! GTAGTTTTCAAAGATCCAAT+GGG - chr7.4:29912481-29912500 None:intergenic 30.0%
!! ATTTCTAGTTTAGCTGCAAA+CGG + chr7.4:29912511-29912530 MS.gene96077:CDS 30.0%
!! TTTTAAGTCGGTGATGTTAA+CGG - chr7.4:29912074-29912093 None:intergenic 30.0%
!!! AAACGTTTTGATTAAACCGT+TGG - chr7.4:29912317-29912336 None:intergenic 30.0%
!!! GATGAAGCTTTTAAAGCTAA+AGG + chr7.4:29912379-29912398 MS.gene96077:CDS 30.0%
AATTCTCGAAGAATCAACTC+CGG - chr7.4:29912593-29912612 None:intergenic 35.0%
ACCGCTTTAATAGAAAAAGC+CGG + chr7.4:29912262-29912281 MS.gene96077:CDS 35.0%
ATGAAGTGTAACAGAATCAC+CGG - chr7.4:29912569-29912588 None:intergenic 35.0%
CAAGCTTTCAAATGCTGAAT+TGG + chr7.4:29912417-29912436 MS.gene96077:CDS 35.0%
CAATTCAGCATTTGAAAGCT+TGG - chr7.4:29912419-29912438 None:intergenic 35.0%
GATTCTGTTACACTTCATAC+CGG + chr7.4:29912571-29912590 MS.gene96077:CDS 35.0%
TATTAAAGCGGTGAGGTTAA+CGG - chr7.4:29912254-29912273 None:intergenic 35.0%
TCAACAGAGTAAATAGCAAG+AGG - chr7.4:29912640-29912659 None:intergenic 35.0%
TTCTTCGAGAATTGCTGATA+CGG + chr7.4:29912600-29912619 MS.gene96077:CDS 35.0%
TTTCAATCAACCGCTGATAA+AGG + chr7.4:29912334-29912353 MS.gene96077:CDS 35.0%
! CGTAGTTTTCAAAGATCCAA+TGG - chr7.4:29912482-29912501 None:intergenic 35.0%
! CTTTTTCTATTAAAGCGGTG+AGG - chr7.4:29912261-29912280 None:intergenic 35.0%
!! ACCGGCTTTTTCTATTAAAG+CGG - chr7.4:29912266-29912285 None:intergenic 35.0%
!! AGGGATTTGTTTAACGGATT+TGG - chr7.4:29912155-29912174 None:intergenic 35.0%
!! GCTTTAAAAGCTTCATCGTT+CGG - chr7.4:29912376-29912395 None:intergenic 35.0%
!! GTTAACATCACCGACTTAAA+AGG + chr7.4:29912073-29912092 MS.gene96077:CDS 35.0%
!!! ATTTTTTTGACGACGGAGAT+AGG - chr7.4:29911929-29911948 None:intergenic 35.0%
!!! TTTTTTTGACGACGGAGATA+GGG - chr7.4:29911928-29911947 None:intergenic 35.0%
GACTTAAAAGGCGGTAAAGT+CGG + chr7.4:29912085-29912104 MS.gene96077:CDS 40.0%
GCTGCTAAATATCTTCCCAT+TGG + chr7.4:29912463-29912482 MS.gene96077:CDS 40.0%
! AAGAGTTCTGGTAAATCTGC+TGG + chr7.4:29912862-29912881 MS.gene96077:CDS 40.0%
! CGATGCAAATGTTTTGCAAC+CGG - chr7.4:29912284-29912303 None:intergenic 40.0%
! GAGAATTGCTGATACGGTTT+TGG + chr7.4:29912606-29912625 MS.gene96077:CDS 40.0%
! TGATAGTGTGCTTCTTCCAT+CGG + chr7.4:29912657-29912676 MS.gene96077:CDS 40.0%
!! AACATCACCGACTTAAAAGG+CGG + chr7.4:29912076-29912095 MS.gene96077:CDS 40.0%
!! GACTTTACCGCCTTTTAAGT+CGG - chr7.4:29912086-29912105 None:intergenic 40.0%
!!! GGAGAGGATTTTTTTGACGA+CGG - chr7.4:29911936-29911955 None:intergenic 40.0%
AAACTCCACCAACTCACCAA+TGG + chr7.4:29911989-29912008 MS.gene96077:CDS 45.0%
AACGGATCCGATGTTGTTGA+CGG - chr7.4:29912056-29912075 None:intergenic 45.0%
AGAGGATTTCGGTGATGTTG+TGG - chr7.4:29911772-29911791 None:intergenic 45.0%
CGAGGACGGAGATATTGTAA+GGG - chr7.4:29912174-29912193 None:intergenic 45.0%
GAGGATTTCGGTGATGTTGT+GGG - chr7.4:29911771-29911790 None:intergenic 45.0%
GATTACACTGTTACCACTGC+CGG + chr7.4:29912547-29912566 MS.gene96077:CDS 45.0%
GCATCGCTTATCTCATCCAA+CGG + chr7.4:29912298-29912317 MS.gene96077:CDS 45.0%
GTGTTGTATTGGGAGTAGTC+GGG - chr7.4:29911803-29911822 None:intergenic 45.0%
TAGTGTTGTCGAAGTAGTCG+AGG - chr7.4:29911970-29911989 None:intergenic 45.0%
TCGAGGACGGAGATATTGTA+AGG - chr7.4:29912175-29912194 None:intergenic 45.0%
TGTTGTATTGGGAGTAGTCG+GGG - chr7.4:29911802-29911821 None:intergenic 45.0%
! AGATGAGTCGAGTTTAGAGC+CGG - chr7.4:29912128-29912147 None:intergenic 45.0%
! GGTGTTGTATTGGGAGTAGT+CGG - chr7.4:29911804-29911823 None:intergenic 45.0%
! GTTTGCTACTTCACCTTCTC+CGG + chr7.4:29912684-29912703 MS.gene96077:CDS 45.0%
!! GACTGCTTTGTCTGCTTTTG+TGG + chr7.4:29912924-29912943 MS.gene96077:CDS 45.0%
!! GGAGAGGAAGGTGTTGTATT+GGG - chr7.4:29911813-29911832 None:intergenic 45.0%
AAGAGAATGCGGCGTTGTTG+AGG - chr7.4:29911889-29911908 None:intergenic 50.0%
AGTAGTCGAGGAGGACTAAG+AGG - chr7.4:29911958-29911977 None:intergenic 50.0%
AGTTTAGCTGCAAACGGTGC+CGG + chr7.4:29912517-29912536 MS.gene96077:CDS 50.0%
GAAGTAGCAAACAGCTCCGA+TGG - chr7.4:29912676-29912695 None:intergenic 50.0%
GATTTCGGTGATGTTGTGGG+CGG - chr7.4:29911768-29911787 None:intergenic 50.0%
GGCGTTGTTGAGGACTAAGA+CGG - chr7.4:29911879-29911898 None:intergenic 50.0%
GGTGTGAACGTGAAAGCTTC+TGG + chr7.4:29912883-29912902 MS.gene96077:CDS 50.0%
GTAGTCGAGGAGGACTAAGA+GGG - chr7.4:29911957-29911976 None:intergenic 50.0%
GTTGAGGACTAAGACGGTGA+TGG - chr7.4:29911873-29911892 None:intergenic 50.0%
TAAAGCGGTGAGGTTAACGG+AGG - chr7.4:29912251-29912270 None:intergenic 50.0%
TGAGAAGGAGGATGAGAGAG+TGG - chr7.4:29911721-29911740 None:intergenic 50.0%
TGATCGGAGCTGTGATTTCG+AGG - chr7.4:29912192-29912211 None:intergenic 50.0%
TGTAACAGAATCACCGGCAG+TGG - chr7.4:29912563-29912582 None:intergenic 50.0%
TGTTGTCGAAGTAGTCGAGG+AGG - chr7.4:29911967-29911986 None:intergenic 50.0%
TTTCGTCGGCGAGTTTGGTT+TGG - chr7.4:29911835-29911854 None:intergenic 50.0%
TTTGACGACGGAGATAGGGT+GGG - chr7.4:29911924-29911943 None:intergenic 50.0%
! AAAGGCGGTAAAGTCGGCTT+CGG + chr7.4:29912091-29912110 MS.gene96077:CDS 50.0%
! CTAAGACGGTGATGGTTTGG+CGG - chr7.4:29911865-29911884 None:intergenic 50.0%
! GATGAGTCGAGTTTAGAGCC+GGG - chr7.4:29912127-29912146 None:intergenic 50.0%
! GGACTAAGACGGTGATGGTT+TGG - chr7.4:29911868-29911887 None:intergenic 50.0%
! GTTGATTTCGTCGGCGAGTT+TGG - chr7.4:29911840-29911859 None:intergenic 50.0%
! TAAGACGGTGATGGTTTGGC+GGG - chr7.4:29911864-29911883 None:intergenic 50.0%
! TTCGTCGGCGAGTTTGGTTT+GGG - chr7.4:29911834-29911853 None:intergenic 50.0%
! TTGGCGGGAGTTGATTTCGT+CGG - chr7.4:29911849-29911868 None:intergenic 50.0%
! TTTTGACGACGGAGATAGGG+TGG - chr7.4:29911925-29911944 None:intergenic 50.0%
!! GAGTTTGGTTTGGGAGAGGA+AGG - chr7.4:29911825-29911844 None:intergenic 50.0%
!! GGAGGTGATGGAAGAGAATG+CGG - chr7.4:29911900-29911919 None:intergenic 50.0%
!! GGGAGAGGAAGGTGTTGTAT+TGG - chr7.4:29911814-29911833 None:intergenic 50.0%
ACCACCCTCTTCCAAACCAC+CGG + chr7.4:29912025-29912044 MS.gene96077:CDS 55.0%
ACCTGCTTCTGCTCCTTCAC+CGG + chr7.4:29912738-29912757 MS.gene96077:CDS 55.0%
AGGATACCGGGAGCGATGAT+CGG - chr7.4:29912208-29912227 None:intergenic 55.0%
AGGTTAACGGAGGAGGAAGG+CGG - chr7.4:29912241-29912260 None:intergenic 55.0%
CGATGGAGAGGATGAGAAGG+AGG - chr7.4:29911733-29911752 None:intergenic 55.0%
CGGAGCTGTGATTTCGAGGA+CGG - chr7.4:29912188-29912207 None:intergenic 55.0%
GAAGGAGCAGAAGCAGGTGT+CGG - chr7.4:29912736-29912755 None:intergenic 55.0%
GATGTTGTGGGCGGAGATTG+TGG - chr7.4:29911759-29911778 None:intergenic 55.0%
GATGTTGTTGACGGCGTTGC+CGG - chr7.4:29912047-29912066 None:intergenic 55.0%
GGCAACGCCGTCAACAACAT+CGG + chr7.4:29912046-29912065 MS.gene96077:CDS 55.0%
GGGGTTGGAGGAGAGGATTT+CGG - chr7.4:29911783-29911802 None:intergenic 55.0%
GTATTGGGAGTAGTCGGGGT+TGG - chr7.4:29911798-29911817 None:intergenic 55.0%
GTGAGGTTAACGGAGGAGGA+AGG - chr7.4:29912244-29912263 None:intergenic 55.0%
TACTTCACCTTCTCCGGCAC+CGG + chr7.4:29912690-29912709 MS.gene96077:CDS 55.0%
TGGCGATGGAGAGGATGAGA+AGG - chr7.4:29911736-29911755 None:intergenic 55.0%
! AGATTGTGGTGGCGATGGAG+AGG - chr7.4:29911745-29911764 None:intergenic 55.0%
! GTTGCCGGTGGTTTGGAAGA+GGG - chr7.4:29912032-29912051 None:intergenic 55.0%
!! GAGTGGTGCCATTGGTGAGT+TGG - chr7.4:29912000-29912019 None:intergenic 55.0%
!! TGGTGCCATTGGTGAGTTGG+TGG - chr7.4:29911997-29912016 None:intergenic 55.0%
AATGGAGTAGGCGCATCCGC+CGG - chr7.4:29912760-29912779 None:intergenic 60.0%
ACAGCTCCGATCATCGCTCC+CGG + chr7.4:29912199-29912218 MS.gene96077:CDS 60.0%
ACTGCGGCGGAGAAGAGTTC+TGG + chr7.4:29912850-29912869 MS.gene96077:CDS 60.0%
AGCGGTGAGGTTAACGGAGG+AGG - chr7.4:29912248-29912267 None:intergenic 60.0%
AGTAGTCGGGGTTGGAGGAG+AGG - chr7.4:29911790-29911809 None:intergenic 60.0%
CCATCTGGACTCTCACCAGC+CGG - chr7.4:29912808-29912827 None:intergenic 60.0%
CGAGGAGGACTAAGAGGGAG+AGG - chr7.4:29911952-29911971 None:intergenic 60.0%
GATAGGGTGGGAGGAGGTGA+TGG - chr7.4:29911912-29911931 None:intergenic 60.0%
GGCGAAGCTGGCAATGGAGT+AGG - chr7.4:29912772-29912791 None:intergenic 60.0%
GTTGTGGGCGGAGATTGTGG+TGG - chr7.4:29911756-29911775 None:intergenic 60.0%
TCCATTGCCAGCTTCGCCTC+CGG + chr7.4:29912774-29912793 MS.gene96077:CDS 60.0%
TGCTTCTGCTCCTTCACCGG+CGG + chr7.4:29912741-29912760 MS.gene96077:CDS 60.0%
TTAACGGAGGAGGAAGGCGG+TGG - chr7.4:29912238-29912257 None:intergenic 60.0%
TTGGGAGTAGTCGGGGTTGG+AGG - chr7.4:29911795-29911814 None:intergenic 60.0%
! CGTTGCCGGTGGTTTGGAAG+AGG - chr7.4:29912033-29912052 None:intergenic 60.0%
! GAGTTTAGAGCCGGGAGCAG+CGG - chr7.4:29912119-29912138 None:intergenic 60.0%
! GCATCAGCTGGAGCACCATC+TGG - chr7.4:29912823-29912842 None:intergenic 60.0%
! GGTGGTTTGGAAGAGGGTGG+TGG - chr7.4:29912026-29912045 None:intergenic 60.0%
!! CGGCGAGTTTGGTTTGGGAG+AGG - chr7.4:29911829-29911848 None:intergenic 60.0%
!! GAAGAGGGTGGTGGAGAGAG+TGG - chr7.4:29912017-29912036 None:intergenic 60.0%
!! GCAGAAGCAGGTGTCGGTGA+AGG - chr7.4:29912730-29912749 None:intergenic 60.0%
!! GGTGGAGAGAGTGGTGCCAT+TGG - chr7.4:29912008-29912027 None:intergenic 60.0%
CCGGCTGGTGAGAGTCCAGA+TGG + chr7.4:29912805-29912824 MS.gene96077:CDS 65.0%
CGGTGGAGCGGTGAGGATAC+CGG - chr7.4:29912221-29912240 None:intergenic 65.0%
CTCTTCTCCGCCGCAGTCGA+CGG - chr7.4:29912847-29912866 None:intergenic 65.0%
GACGACGGAGATAGGGTGGG+AGG - chr7.4:29911921-29911940 None:intergenic 65.0%
GACGGAGATAGGGTGGGAGG+AGG - chr7.4:29911918-29911937 None:intergenic 65.0%
GCCGGTGAAGGAGCAGAAGC+AGG - chr7.4:29912742-29912761 None:intergenic 65.0%
GGTGGAGCGGTGAGGATACC+GGG - chr7.4:29912220-29912239 None:intergenic 65.0%
GTTGTTGACGGCGTTGCCGG+TGG - chr7.4:29912044-29912063 None:intergenic 65.0%
TGACGGCGTTGCCGGTGGTT+TGG - chr7.4:29912039-29912058 None:intergenic 65.0%
! AGCTGATGCGCCGTCGACTG+CGG + chr7.4:29912834-29912853 MS.gene96077:CDS 65.0%
! GCCGGTGGTTTGGAAGAGGG+TGG - chr7.4:29912029-29912048 None:intergenic 65.0%
! GGCGGAGATTGTGGTGGCGA+TGG - chr7.4:29911750-29911769 None:intergenic 65.0%
!! GAAGGAGCACCAGCAGGCTC+CGG - chr7.4:29912712-29912731 None:intergenic 65.0%
!! GTCGGTGAAGGAGCACCAGC+AGG - chr7.4:29912718-29912737 None:intergenic 65.0%
AGGAAGGCGGTGGAGCGGTG+AGG - chr7.4:29912228-29912247 None:intergenic 70.0%
GCAGTCGACGGCGCATCAGC+TGG - chr7.4:29912835-29912854 None:intergenic 70.0%
GCCGGAGGCGAAGCTGGCAA+TGG - chr7.4:29912778-29912797 None:intergenic 70.0%
GGACTCTCACCAGCCGGAGC+CGG - chr7.4:29912802-29912821 None:intergenic 70.0%
GGAGGAGGAAGGCGGTGGAG+CGG - chr7.4:29912233-29912252 None:intergenic 70.0%
GTAGGCGCATCCGCCGGTGA+AGG - chr7.4:29912754-29912773 None:intergenic 70.0%
! TGATGCGCCGTCGACTGCGG+CGG + chr7.4:29912837-29912856 MS.gene96077:CDS 70.0%
GCACCAGCAGGCTCCGGTGC+CGG - chr7.4:29912706-29912725 None:intergenic 75.0%
GCCAGCTTCGCCTCCGGCTC+CGG + chr7.4:29912780-29912799 MS.gene96077:CDS 75.0%
GGCTTCGGCTCCGCTGCTCC+CGG + chr7.4:29912106-29912125 MS.gene96077:CDS 75.0%
TCACCAGCCGGAGCCGGAGC+CGG - chr7.4:29912796-29912815 None:intergenic 75.0%
TTCGCCTCCGGCTCCGGCTC+CGG + chr7.4:29912786-29912805 MS.gene96077:CDS 75.0%
! GCAGGCTCCGGTGCCGGAGA+AGG - chr7.4:29912700-29912719 None:intergenic 75.0%
! TCTCCGGCACCGGAGCCTGC+TGG + chr7.4:29912700-29912719 MS.gene96077:CDS 75.0%
! GCCGGAGCCGGAGGCGAAGC+TGG - chr7.4:29912784-29912803 None:intergenic 80.0%
! CCAGCCGGAGCCGGAGCCGG+AGG - chr7.4:29912793-29912812 None:intergenic 85.0%
! CCTCCGGCTCCGGCTCCGGC+TGG + chr7.4:29912790-29912809 MS.gene96077:CDS 85.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 29911710 29912969 29911710 ID=MS.gene96077
chr7.4 mRNA 29911710 29912969 29911710 ID=MS.gene96077.t1;Parent=MS.gene96077
chr7.4 exon 29911710 29912969 29911710 ID=MS.gene96077.t1.exon1;Parent=MS.gene96077.t1
chr7.4 CDS 29911710 29912969 29911710 ID=cds.MS.gene96077.t1;Parent=MS.gene96077.t1
Gene Sequence

>MS.gene96077

ATGGGTCACCACTCTCTCATCCTCCTTCTCATCCTCTCCATCGCCACCACAATCTCCGCCCACAACATCACCGAAATCCTCTCCTCCAACCCCGACTACTCCCAATACAACACCTTCCTCTCCCAAACCAAACTCGCCGACGAAATCAACTCCCGCCAAACCATCACCGTCTTAGTCCTCAACAACGCCGCATTCTCTTCCATCACCTCCTCCCACCCTATCTCCGTCGTCAAAAAAATCCTCTCCCTCTTAGTCCTCCTCGACTACTTCGACAACACTAAACTCCACCAACTCACCAATGGCACCACTCTCTCCACCACCCTCTTCCAAACCACCGGCAACGCCGTCAACAACATCGGATCCGTTAACATCACCGACTTAAAAGGCGGTAAAGTCGGCTTCGGCTCCGCTGCTCCCGGCTCTAAACTCGACTCATCTTACTCCAAATCCGTTAAACAAATCCCTTACAATATCTCCGTCCTCGAAATCACAGCTCCGATCATCGCTCCCGGTATCCTCACCGCTCCACCGCCTTCCTCCTCCGTTAACCTCACCGCTTTAATAGAAAAAGCCGGTTGCAAAACATTTGCATCGCTTATCTCATCCAACGGTTTAATCAAAACGTTTCAATCAACCGCTGATAAAGGTTTAACGATTTTTGCTCCGAACGATGAAGCTTTTAAAGCTAAAGGTGTTCCAGATTTAACCAAGCTTTCAAATGCTGAATTGGTTTCACTTTTACAGTATCATGCTGCTGCTAAATATCTTCCCATTGGATCTTTGAAAACTACGAAAGACGCTATTTCTAGTTTAGCTGCAAACGGTGCCGGAAAATTTGATTACACTGTTACCACTGCCGGTGATTCTGTTACACTTCATACCGGAGTTGATTCTTCGAGAATTGCTGATACGGTTTTGGATTCTACTCCTCTTGCTATTTACTCTGTTGATAGTGTGCTTCTTCCATCGGAGCTGTTTGCTACTTCACCTTCTCCGGCACCGGAGCCTGCTGGTGCTCCTTCACCGACACCTGCTTCTGCTCCTTCACCGGCGGATGCGCCTACTCCATTGCCAGCTTCGCCTCCGGCTCCGGCTCCGGCTGGTGAGAGTCCAGATGGTGCTCCAGCTGATGCGCCGTCGACTGCGGCGGAGAAGAGTTCTGGTAAATCTGCTGGTGTGAACGTGAAAGCTTCTGGTGTTTTTACTGTTGCAGTGACTGCTTTGTCTGCTTTTGTGGTTTCGTTTGTTTTTATGTCTTGA

Protein sequence

>MS.gene96077.t1

MGHHSLILLLILSIATTISAHNITEILSSNPDYSQYNTFLSQTKLADEINSRQTITVLVLNNAAFSSITSSHPISVVKKILSLLVLLDYFDNTKLHQLTNGTTLSTTLFQTTGNAVNNIGSVNITDLKGGKVGFGSAAPGSKLDSSYSKSVKQIPYNISVLEITAPIIAPGILTAPPPSSSVNLTALIEKAGCKTFASLISSNGLIKTFQSTADKGLTIFAPNDEAFKAKGVPDLTKLSNAELVSLLQYHAAAKYLPIGSLKTTKDAISSLAANGAGKFDYTVTTAGDSVTLHTGVDSSRIADTVLDSTPLAIYSVDSVLLPSELFATSPSPAPEPAGAPSPTPASAPSPADAPTPLPASPPAPAPAGESPDGAPADAPSTAAEKSSGKSAGVNVKASGVFTVAVTALSAFVVSFVFMS