Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96430.t1 | KEH40903.1 | 95.2 | 1415 | 45 | 1 | 1 | 1392 | 1 | 1415 | 0.00E+00 | 2599.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96430.t1 | A4L9P7 | 24.1 | 1244 | 801 | 34 | 76 | 1271 | 78 | 1226 | 7.5e-67 | 257.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96430.t1 | A0A072VHM7 | 95.2 | 1415 | 45 | 1 | 1 | 1392 | 1 | 1415 | 0.0e+00 | 2599.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene75575 | MS.gene96430 | PPI |
| MS.gene043593 | MS.gene96430 | PPI |
| MS.gene064353 | MS.gene96430 | PPI |
| MS.gene045233 | MS.gene96430 | PPI |
| MS.gene035825 | MS.gene96430 | PPI |
| MS.gene79130 | MS.gene96430 | PPI |
| MS.gene73093 | MS.gene96430 | PPI |
| MS.gene043643 | MS.gene96430 | PPI |
| MS.gene95527 | MS.gene96430 | PPI |
| MS.gene035826 | MS.gene96430 | PPI |
| MS.gene064351 | MS.gene96430 | PPI |
| MS.gene035828 | MS.gene96430 | PPI |
| MS.gene46640 | MS.gene96430 | PPI |
| MS.gene99872 | MS.gene96430 | PPI |
| MS.gene043595 | MS.gene96430 | PPI |
| MS.gene92710 | MS.gene96430 | PPI |
| MS.gene045232 | MS.gene96430 | PPI |
| MS.gene77911 | MS.gene96430 | PPI |
| MS.gene045235 | MS.gene96430 | PPI |
| MS.gene067033 | MS.gene96430 | PPI |
| MS.gene043645 | MS.gene96430 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96430.t1 | MTR_1g037280 | 95.194 | 1415 | 45 | 1 | 1 | 1392 | 1 | 1415 | 0.0 | 2748 |
| MS.gene96430.t1 | MTR_1g037280 | 95.124 | 1415 | 45 | 2 | 1 | 1392 | 1 | 1414 | 0.0 | 2743 |
| MS.gene96430.t1 | MTR_1g037280 | 94.782 | 1399 | 45 | 2 | 1 | 1371 | 1 | 1399 | 0.0 | 2699 |
| MS.gene96430.t1 | MTR_4g134080 | 34.269 | 1176 | 668 | 26 | 6 | 1161 | 14 | 1104 | 0.0 | 609 |
| MS.gene96430.t1 | MTR_4g134080 | 34.269 | 1176 | 668 | 26 | 6 | 1161 | 14 | 1104 | 0.0 | 609 |
| MS.gene96430.t1 | MTR_4g134080 | 34.269 | 1176 | 668 | 26 | 6 | 1161 | 14 | 1104 | 0.0 | 609 |
| MS.gene96430.t1 | MTR_2g027090 | 33.867 | 1187 | 678 | 28 | 9 | 1173 | 9 | 1110 | 2.82e-180 | 580 |
| MS.gene96430.t1 | MTR_1g014300 | 32.850 | 207 | 129 | 1 | 25 | 231 | 39 | 235 | 1.05e-33 | 131 |
| MS.gene96430.t1 | MTR_1g014270 | 38.012 | 171 | 106 | 0 | 61 | 231 | 53 | 223 | 2.42e-33 | 140 |
| MS.gene96430.t1 | MTR_3g106100 | 36.471 | 170 | 108 | 0 | 62 | 231 | 54 | 223 | 3.54e-31 | 133 |
| MS.gene96430.t1 | MTR_4g006875 | 32.314 | 229 | 143 | 2 | 4 | 231 | 9 | 226 | 4.40e-29 | 126 |
| MS.gene96430.t1 | MTR_4g006875 | 36.196 | 163 | 104 | 0 | 69 | 231 | 26 | 188 | 5.25e-29 | 125 |
| MS.gene96430.t1 | MTR_4g030130 | 29.630 | 135 | 83 | 2 | 2 | 135 | 13 | 136 | 2.41e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96430.t1 | AT1G77600 | 42.551 | 1215 | 586 | 16 | 1 | 1180 | 1 | 1138 | 0.0 | 897 |
| MS.gene96430.t1 | AT1G77600 | 42.551 | 1215 | 586 | 16 | 1 | 1180 | 1 | 1138 | 0.0 | 897 |
| MS.gene96430.t1 | AT1G77600 | 42.067 | 1229 | 586 | 17 | 1 | 1180 | 1 | 1152 | 0.0 | 887 |
| MS.gene96430.t1 | AT5G47690 | 33.729 | 1180 | 660 | 23 | 23 | 1171 | 22 | 1110 | 0.0 | 602 |
| MS.gene96430.t1 | AT5G47690 | 33.729 | 1180 | 660 | 23 | 23 | 1171 | 22 | 1110 | 0.0 | 602 |
| MS.gene96430.t1 | AT5G47690 | 33.729 | 1180 | 660 | 23 | 23 | 1171 | 22 | 1110 | 0.0 | 602 |
| MS.gene96430.t1 | AT5G47690 | 33.272 | 1091 | 622 | 26 | 109 | 1171 | 1 | 1013 | 5.42e-156 | 511 |
| MS.gene96430.t1 | AT4G31880 | 40.116 | 172 | 102 | 1 | 60 | 231 | 52 | 222 | 1.46e-37 | 154 |
| MS.gene96430.t1 | AT4G31880 | 40.116 | 172 | 102 | 1 | 60 | 231 | 52 | 222 | 1.51e-37 | 153 |
| MS.gene96430.t1 | AT1G80810 | 39.080 | 174 | 106 | 0 | 60 | 233 | 54 | 227 | 9.53e-33 | 137 |
| MS.gene96430.t1 | AT1G15940 | 39.053 | 169 | 103 | 0 | 62 | 230 | 58 | 226 | 1.64e-32 | 138 |
| MS.gene96430.t1 | AT1G80810 | 39.306 | 173 | 105 | 0 | 60 | 232 | 2 | 174 | 1.74e-32 | 137 |
| MS.gene96430.t1 | AT1G80810 | 39.306 | 173 | 105 | 0 | 60 | 232 | 2 | 174 | 1.80e-32 | 137 |
| MS.gene96430.t1 | AT1G80810 | 39.306 | 173 | 105 | 0 | 60 | 232 | 2 | 174 | 1.80e-32 | 137 |
| MS.gene96430.t1 | AT1G80810 | 39.306 | 173 | 105 | 0 | 60 | 232 | 54 | 226 | 2.59e-32 | 136 |
Find 227 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGATGACGGTGGATTTA+AGG | 0.152329 | 1.2:+22623915 | MS.gene96430:CDS |
| CTTACTGCAAATATTCATTT+TGG | 0.158706 | 1.2:-22635181 | None:intergenic |
| AAGAGATGCCACTTGTTTAT+TGG | 0.186396 | 1.2:+22635416 | MS.gene96430:CDS |
| AATAGCAGAGACTGCAAATT+TGG | 0.210284 | 1.2:-22626633 | None:intergenic |
| GTCTATGTGGCGAATCCTTT+TGG | 0.212959 | 1.2:+22620399 | MS.gene96430:CDS |
| AAAGGCACTGAATACTATTT+TGG | 0.215599 | 1.2:+22621196 | MS.gene96430:CDS |
| TAAACAAGTGGCATCTCTTT+TGG | 0.230720 | 1.2:-22635412 | None:intergenic |
| CAATTACTTGAATCATCTTT+TGG | 0.252795 | 1.2:-22627339 | None:intergenic |
| GTTTGATCAGATGGAGTATT+TGG | 0.256294 | 1.2:+22627948 | MS.gene96430:intron |
| TCAATCAGCTTGTCATTTAC+AGG | 0.257752 | 1.2:-22624701 | None:intergenic |
| GTATCTTTGAAGTTGTTTCT+AGG | 0.258326 | 1.2:-22635486 | None:intergenic |
| CATACGAAACAGAACATTAA+TGG | 0.259324 | 1.2:+22629501 | MS.gene96430:CDS |
| CAATGCTCTGTTTCAGATCT+TGG | 0.264682 | 1.2:+22627761 | MS.gene96430:CDS |
| CAAGTGCCTCCGTCTGATTC+TGG | 0.266339 | 1.2:+22635303 | MS.gene96430:CDS |
| TGTTTATCAGATGGAGTCTT+TGG | 0.268530 | 1.2:+22627468 | MS.gene96430:intron |
| GGACAACGATGTTCCCTCTT+TGG | 0.272284 | 1.2:-22637568 | None:intergenic |
| TGAAAGACTTAGGGATAAAA+AGG | 0.284745 | 1.2:+22620746 | MS.gene96430:CDS |
| GAATGAGATGATAAACTATT+TGG | 0.286082 | 1.2:+22621308 | MS.gene96430:CDS |
| GGCAATACGGAAGAAATTAA+AGG | 0.286256 | 1.2:+22621329 | MS.gene96430:CDS |
| TCGGTTAAAAGCTGTTAATT+TGG | 0.290729 | 1.2:+22620245 | MS.gene96430:CDS |
| ATGGTGAAGCGGAAAATTTC+TGG | 0.291898 | 1.2:-22632218 | None:intergenic |
| GATGTATTTAAACTCATTAT+TGG | 0.292432 | 1.2:+22618902 | MS.gene96430:CDS |
| CCCAACCATTATGCGAAATC+TGG | 0.294391 | 1.2:+22627249 | MS.gene96430:CDS |
| ACATATGGCAGAGTTTATTA+AGG | 0.299383 | 1.2:+22634156 | MS.gene96430:CDS |
| CAAGTACTTGAATAATCTTC+TGG | 0.303160 | 1.2:-22627817 | None:intergenic |
| AGCTGAACACCCTAGTTTGC+AGG | 0.303496 | 1.2:+22619920 | MS.gene96430:CDS |
| ACAAGTTATTATCTTTGATT+TGG | 0.303962 | 1.2:-22622662 | None:intergenic |
| CAAAGATACATGTGGCTCTA+AGG | 0.312039 | 1.2:+22635500 | MS.gene96430:CDS |
| CTCAAACTCATCTCCGATAT+CGG | 0.315949 | 1.2:+22617384 | MS.gene96430:CDS |
| TAGAAATAACAGCGGTTTAA+TGG | 0.317091 | 1.2:+22637717 | MS.gene96430:CDS |
| TCAAGAATGCTACGGGAAAA+TGG | 0.318391 | 1.2:+22629540 | MS.gene96430:CDS |
| ACCTGAGCAGCTTCTGTTGA+AGG | 0.332104 | 1.2:+22620612 | MS.gene96430:intron |
| CTTCTTTCTCCTGCAGGCAT+TGG | 0.334133 | 1.2:+22634441 | MS.gene96430:CDS |
| TTACAAACTACATACTTTGA+TGG | 0.335176 | 1.2:-22622736 | None:intergenic |
| CAGATCCCAGAGCATGGAAT+TGG | 0.335494 | 1.2:+22621079 | MS.gene96430:intron |
| GTTTGTTCCCTTGAAACTAA+TGG | 0.338281 | 1.2:+22620713 | MS.gene96430:CDS |
| TTCCTCGCTCTCATTCAAAA+TGG | 0.348716 | 1.2:-22619447 | None:intergenic |
| AAACTTGAAAGATAATTTCA+TGG | 0.351251 | 1.2:-22620002 | None:intergenic |
| GAAGAACCAACTTTCACAAT+TGG | 0.354302 | 1.2:+22622708 | MS.gene96430:CDS |
| CTGTTCGCGGCTGAGGAGAC+TGG | 0.364886 | 1.2:-22618572 | None:intergenic |
| CGATATTTCTTCAATTAAGC+TGG | 0.368701 | 1.2:-22620061 | None:intergenic |
| GACAGAGACGCCGTGGGCTG+CGG | 0.369037 | 1.2:+22619964 | MS.gene96430:CDS |
| CTTAAATCCACCGTCATCAT+TGG | 0.371498 | 1.2:-22623914 | None:intergenic |
| ACCTGCTCGCAAGGGTCAAC+AGG | 0.371549 | 1.2:+22635146 | MS.gene96430:CDS |
| GCAACCCAGATTTCGCATAA+TGG | 0.372429 | 1.2:-22627254 | None:intergenic |
| ATAAGGATTGCAAGGAGTTC+AGG | 0.374450 | 1.2:+22620978 | MS.gene96430:CDS |
| AGGAGCATAAACTACCTATC+AGG | 0.377054 | 1.2:+22633629 | MS.gene96430:CDS |
| TTCAACCAGAGAACCCTTAC+AGG | 0.379583 | 1.2:-22635367 | None:intergenic |
| TTTGATGCTTTGCTATGATA+AGG | 0.381462 | 1.2:+22620961 | MS.gene96430:CDS |
| CAGCTTAATTGAAGAAATAT+CGG | 0.383625 | 1.2:+22620062 | MS.gene96430:CDS |
| CTGCACAAGCTGGTTGAAAT+TGG | 0.386106 | 1.2:+22634663 | MS.gene96430:CDS |
| ATCCAATTTGTAGGCTGATC+AGG | 0.387190 | 1.2:+22620215 | MS.gene96430:intron |
| TCTCTACTTGGGAAACTGTC+TGG | 0.389430 | 1.2:-22635225 | None:intergenic |
| TCCACTCTTCTTTCTCCTGC+AGG | 0.391465 | 1.2:+22634435 | MS.gene96430:CDS |
| GTATTTGTTATTTCTCTACT+TGG | 0.391575 | 1.2:-22635237 | None:intergenic |
| CGACAACCTTCTTCTGTTGA+AGG | 0.394170 | 1.2:+22634202 | MS.gene96430:CDS |
| GATGGACTTCTTGTAAAGAT+TGG | 0.395454 | 1.2:+22623790 | MS.gene96430:CDS |
| CTAGAGAGAATGTGCTTACA+TGG | 0.396271 | 1.2:+22626596 | MS.gene96430:CDS |
| TGATTACCCTGCATATGTTT+TGG | 0.397914 | 1.2:+22634234 | MS.gene96430:CDS |
| AAGTGTATGCTGACATTTGT+AGG | 0.399605 | 1.2:+22634317 | MS.gene96430:CDS |
| CACTGAATTATTTCGAATCA+AGG | 0.401173 | 1.2:+22618719 | MS.gene96430:CDS |
| CAAGAACCAATTCCATGCTC+TGG | 0.401194 | 1.2:-22621085 | None:intergenic |
| CCCAGAGATTGCAAAATTGT+TGG | 0.404532 | 1.2:-22627728 | None:intergenic |
| CTGATAGATGCTGTGGTTTG+TGG | 0.404803 | 1.2:+22618642 | MS.gene96430:CDS |
| AAGGCACTCTTCTGCTTTGT+GGG | 0.410725 | 1.2:-22622628 | None:intergenic |
| GTGGCGGTCTTCTTCAGCAT+GGG | 0.414521 | 1.2:+22618661 | MS.gene96430:CDS |
| GAAGGCACTCTTCTGCTTTG+TGG | 0.415439 | 1.2:-22622629 | None:intergenic |
| CTCCGAGCCTTTCAGCATTG+AGG | 0.415607 | 1.2:-22624645 | None:intergenic |
| CAGCAAATCTTGTCAATTGA+AGG | 0.416739 | 1.2:+22628011 | MS.gene96430:CDS |
| TTGTGATACAGAAATTTCTC+TGG | 0.419432 | 1.2:-22634712 | None:intergenic |
| TCCGAGCCTTTCAGCATTGA+GGG | 0.420202 | 1.2:-22624644 | None:intergenic |
| TATCTTTGAAGTTGTTTCTA+GGG | 0.420430 | 1.2:-22635485 | None:intergenic |
| TTGTCTTCAAAAGGAGGTTC+AGG | 0.420758 | 1.2:-22618744 | None:intergenic |
| CTGAAGTCTCTGAAAGACTT+AGG | 0.422787 | 1.2:+22620736 | MS.gene96430:CDS |
| CTGGATCAGTTGAAAGAAAC+CGG | 0.422819 | 1.2:+22635322 | MS.gene96430:CDS |
| AAAATGGTGGTTCTGTTGAT+AGG | 0.423982 | 1.2:+22629556 | MS.gene96430:CDS |
| ACCCCTCAGCGCAGAAAACT+TGG | 0.425590 | 1.2:+22627520 | MS.gene96430:CDS |
| TTTCAGTCCTCTTCATGAAA+AGG | 0.425682 | 1.2:+22621178 | MS.gene96430:CDS |
| GACTTCAGCCATTAGTTTCA+AGG | 0.429451 | 1.2:-22620721 | None:intergenic |
| AAAGTGTTGCTTATTAATGC+TGG | 0.430223 | 1.2:+22619003 | MS.gene96430:CDS |
| AGGCTGATCAGGTTGATATT+CGG | 0.431025 | 1.2:+22620226 | MS.gene96430:intron |
| AGCGAGTTGAGTTCCGATAT+CGG | 0.431457 | 1.2:-22617397 | None:intergenic |
| TGTGACCTGTAAGGGTTCTC+TGG | 0.434003 | 1.2:+22635362 | MS.gene96430:CDS |
| CCAGAGATTGCAAAATTGTT+GGG | 0.444162 | 1.2:-22627727 | None:intergenic |
| ATGTTCCCTCTTTGGCTGCT+AGG | 0.444275 | 1.2:-22637560 | None:intergenic |
| CTCAAATGCTTGTCTTCAAA+AGG | 0.444732 | 1.2:-22618753 | None:intergenic |
| TCTTTGGCTGTTCGCGGCTG+AGG | 0.447594 | 1.2:-22618579 | None:intergenic |
| AAGCAAACTACTGCTACAAC+AGG | 0.447619 | 1.2:+22637534 | MS.gene96430:CDS |
| TCTTCTTCAGCATGGGGATA+AGG | 0.449335 | 1.2:+22618668 | MS.gene96430:CDS |
| AAGAATTAGTGCTTTACAAT+GGG | 0.450594 | 1.2:+22620368 | MS.gene96430:CDS |
| TTAAAAGCTGTTAATTTGGT+GGG | 0.450596 | 1.2:+22620249 | MS.gene96430:CDS |
| GGTCATCAAAGTCAAATAAT+CGG | 0.453439 | 1.2:-22620635 | None:intergenic |
| GCTGAAAGGCTCGGAGAAGC+TGG | 0.453836 | 1.2:+22624652 | MS.gene96430:CDS |
| AAAATATATCTTCAGAGAAA+AGG | 0.454729 | 1.2:+22635274 | MS.gene96430:CDS |
| TCCTGTTGACCCTTGCGAGC+AGG | 0.456837 | 1.2:-22635147 | None:intergenic |
| TAGTGATTCTGTGACCTGTA+AGG | 0.457303 | 1.2:+22635353 | MS.gene96430:CDS |
| TTCGTATGGTTCCCTTGGTA+AGG | 0.458921 | 1.2:-22629486 | None:intergenic |
| ACAGAACATTAATGGACTCT+TGG | 0.460359 | 1.2:+22629509 | MS.gene96430:CDS |
| ACTCATTATTGGTTTGTTTG+CGG | 0.461013 | 1.2:+22618913 | MS.gene96430:CDS |
| CATTAATGTTCTGTTTCGTA+TGG | 0.461175 | 1.2:-22629500 | None:intergenic |
| CTCGGAGAAGCTGGTTCAAA+TGG | 0.463737 | 1.2:+22624661 | MS.gene96430:CDS |
| AGTTGTCTCAAAATTATTTG+AGG | 0.464264 | 1.2:+22626679 | MS.gene96430:CDS |
| TCAGGTGTCTGTTAGGAAGA+AGG | 0.466388 | 1.2:+22620838 | MS.gene96430:intron |
| CAAAGCATCAAAACTTTACA+TGG | 0.467743 | 1.2:-22620950 | None:intergenic |
| TCAAGTGATTCTCTCCCAAA+AGG | 0.468765 | 1.2:-22620414 | None:intergenic |
| TGTGGCGGTCTTCTTCAGCA+TGG | 0.469195 | 1.2:+22618660 | MS.gene96430:CDS |
| AAAGCACAAGCAAACCTGAT+AGG | 0.470813 | 1.2:-22633643 | None:intergenic |
| GTTTCAAGGGAACAAACATC+AGG | 0.472840 | 1.2:-22620707 | None:intergenic |
| ATTCTAGAACTATAAACATA+TGG | 0.473223 | 1.2:+22634141 | MS.gene96430:intron |
| TCTGTTTCGTATGGTTCCCT+TGG | 0.473291 | 1.2:-22629491 | None:intergenic |
| CCCAGATTTCGCATAATGGT+TGG | 0.473713 | 1.2:-22627250 | None:intergenic |
| CCAGATTTCGCATAATGGTT+GGG | 0.477679 | 1.2:-22627249 | None:intergenic |
| ACAGAGACGCCGTGGGCTGC+GGG | 0.477918 | 1.2:+22619965 | MS.gene96430:CDS |
| CAGAAAACTTGGTCAATTGA+AGG | 0.480101 | 1.2:+22627531 | MS.gene96430:CDS |
| GTTTGTCCAATTGTGAAAGT+TGG | 0.481602 | 1.2:-22622714 | None:intergenic |
| TTTACTTCTTTGGCTGTTCG+CGG | 0.482036 | 1.2:-22618585 | None:intergenic |
| AAGTACACCAAAACATATGC+AGG | 0.482688 | 1.2:-22634241 | None:intergenic |
| ATTCGCCACATAGACAGCTT+TGG | 0.483791 | 1.2:-22620391 | None:intergenic |
| TAAAACTCAGAAATTGTTGA+AGG | 0.485738 | 1.2:+22633609 | MS.gene96430:CDS |
| TTGACGATGAAGTCTTTGTT+CGG | 0.485867 | 1.2:-22617432 | None:intergenic |
| TGAAGTCTCTGAAAGACTTA+GGG | 0.486997 | 1.2:+22620737 | MS.gene96430:CDS |
| CCCCTCAATGCTGAAAGGCT+CGG | 0.487251 | 1.2:+22624643 | MS.gene96430:CDS |
| CTCTCGAACCTATGCACCTA+AGG | 0.487804 | 1.2:+22635007 | MS.gene96430:CDS |
| TTTCTCCTAACAAAAGAAGA+AGG | 0.488174 | 1.2:-22633577 | None:intergenic |
| GAAGGCCTCACAGAAGTTGA+TGG | 0.491941 | 1.2:+22620856 | MS.gene96430:CDS |
| GACGATCTGACATCCTTGTA+TGG | 0.492020 | 1.2:+22627496 | MS.gene96430:CDS |
| TGATTTGGTTTAACTTGTGA+AGG | 0.492234 | 1.2:-22622647 | None:intergenic |
| TTCTTCTGTAAATCTTCTGC+TGG | 0.497573 | 1.2:+22623939 | MS.gene96430:CDS |
| CTGAGAGAAGAATGCTCACT+AGG | 0.498678 | 1.2:-22637504 | None:intergenic |
| ACTTCATAAACCTGCTCGCA+AGG | 0.499606 | 1.2:+22635137 | MS.gene96430:CDS |
| GCGCTGAGGGGTTCCATACA+AGG | 0.500389 | 1.2:-22627509 | None:intergenic |
| ATTGCTCCTTCAACAGAAGA+AGG | 0.501511 | 1.2:-22634208 | None:intergenic |
| TTCTTCATCTTGCTAAGAAG+TGG | 0.503925 | 1.2:+22632180 | MS.gene96430:CDS |
| TATTTGTTATTTCTCTACTT+GGG | 0.504147 | 1.2:-22635236 | None:intergenic |
| GTTAAAAGCTGTTAATTTGG+TGG | 0.508129 | 1.2:+22620248 | MS.gene96430:CDS |
| TCCCGAGCATCTTTCTGTTG+CGG | 0.509417 | 1.2:+22621121 | MS.gene96430:CDS |
| TCAGTAATGCTGATTGTCAC+CGG | 0.509657 | 1.2:+22634470 | MS.gene96430:CDS |
| TTCTTTAAGCCCGCAGCCCA+CGG | 0.512103 | 1.2:-22619974 | None:intergenic |
| GATATTTCTTCAATTAAGCT+GGG | 0.517070 | 1.2:-22620060 | None:intergenic |
| TGATAAACTATTTGGCAATA+CGG | 0.526283 | 1.2:+22621316 | MS.gene96430:CDS |
| TCCGCAACAGAAAGATGCTC+GGG | 0.527111 | 1.2:-22621122 | None:intergenic |
| GAAATAATTCAGTGACGCAA+AGG | 0.528935 | 1.2:-22618710 | None:intergenic |
| TTTATTCTTTCAATAGACAA+TGG | 0.529012 | 1.2:+22627221 | MS.gene96430:CDS |
| CCAACCATTATGCGAAATCT+GGG | 0.532326 | 1.2:+22627250 | MS.gene96430:CDS |
| CAACCGCCTGCATCCTCACT+CGG | 0.532732 | 1.2:-22620656 | None:intergenic |
| GTAACGTTTCTTTCAATCTG+AGG | 0.534340 | 1.2:+22624744 | MS.gene96430:CDS |
| TAAGAATTAGTGCTTTACAA+TGG | 0.534544 | 1.2:+22620367 | MS.gene96430:CDS |
| ATGACTGCAAGAAGCATATG+AGG | 0.537120 | 1.2:-22620036 | None:intergenic |
| TCTTCATCTTGCTAAGAAGT+GGG | 0.541111 | 1.2:+22632181 | MS.gene96430:CDS |
| TTCCGCAACAGAAAGATGCT+CGG | 0.542585 | 1.2:-22621123 | None:intergenic |
| ACTTCAGCCATTAGTTTCAA+GGG | 0.543546 | 1.2:-22620720 | None:intergenic |
| CTGTGCATCAACAGAATCCT+CGG | 0.544516 | 1.2:-22634551 | None:intergenic |
| GATTATCTTTCCAATGATGA+CGG | 0.544905 | 1.2:+22623904 | MS.gene96430:CDS |
| AGTGATTCTGTGACCTGTAA+GGG | 0.545540 | 1.2:+22635354 | MS.gene96430:CDS |
| AAATAATTCAGTGACGCAAA+GGG | 0.548105 | 1.2:-22618709 | None:intergenic |
| AAGAACCAATTCCATGCTCT+GGG | 0.548415 | 1.2:-22621084 | None:intergenic |
| GAAGCTGGTTCAAATGGTGT+TGG | 0.548698 | 1.2:+22624667 | MS.gene96430:CDS |
| TAAAAGCTGTTAATTTGGTG+GGG | 0.550474 | 1.2:+22620250 | MS.gene96430:CDS |
| CAAATATACCTTAGGTGCAT+AGG | 0.550768 | 1.2:-22635015 | None:intergenic |
| TGATATCAACCAATGCCTGC+AGG | 0.551132 | 1.2:-22634450 | None:intergenic |
| TGTGTAGGCACGATTTCCAC+TGG | 0.553949 | 1.2:+22636658 | MS.gene96430:intron |
| TACTGTAAGAAATGTTGTGA+AGG | 0.558571 | 1.2:+22620893 | MS.gene96430:CDS |
| TATTTGCAGTAAGCTCGACT+TGG | 0.560768 | 1.2:+22635191 | MS.gene96430:CDS |
| AGTTGATAAGAAGCACAAGT+TGG | 0.564113 | 1.2:-22619859 | None:intergenic |
| CGTTGAACATCTCGAGAACA+AGG | 0.565812 | 1.2:-22619042 | None:intergenic |
| TGATGACCGAGTGAGGATGC+AGG | 0.565959 | 1.2:+22620650 | MS.gene96430:CDS |
| TTGCGGAAAGGACAAAGCAC+TGG | 0.567584 | 1.2:+22621138 | MS.gene96430:CDS |
| TTGCTATGATAAGGATTGCA+AGG | 0.568868 | 1.2:+22620970 | MS.gene96430:CDS |
| GAAGGCAGCAAAATTTGTCG+TGG | 0.573201 | 1.2:-22634738 | None:intergenic |
| AATTAGTACTTGTGCGCATG+AGG | 0.574053 | 1.2:+22619894 | MS.gene96430:CDS |
| TGTGTGCAGTGAAAACGATA+AGG | 0.574858 | 1.2:+22632127 | MS.gene96430:intron |
| CTTCACCATGTTGATTGCAA+AGG | 0.575229 | 1.2:+22632232 | MS.gene96430:CDS |
| TGTGATACAGAAATTTCTCT+GGG | 0.575947 | 1.2:-22634711 | None:intergenic |
| AGCATCTTTCTGTTGCGGAA+AGG | 0.576447 | 1.2:+22621126 | MS.gene96430:CDS |
| TGGCGGTCTTCTTCAGCATG+GGG | 0.578280 | 1.2:+22618662 | MS.gene96430:CDS |
| AAGGCAGCAAAATTTGTCGT+GGG | 0.578769 | 1.2:-22634737 | None:intergenic |
| CAGAATCACTAGATGAAAGC+CGG | 0.580095 | 1.2:-22635341 | None:intergenic |
| CAGTAATGCTGATTGTCACC+GGG | 0.583107 | 1.2:+22634471 | MS.gene96430:CDS |
| ATTGAGATTATAGCGATGGC+AGG | 0.584614 | 1.2:+22624719 | MS.gene96430:CDS |
| AAATGCTTGTCTTCAAAAGG+AGG | 0.585800 | 1.2:-22618750 | None:intergenic |
| CCGAGCCTTTCAGCATTGAG+GGG | 0.585990 | 1.2:-22624643 | None:intergenic |
| AGCTGAAACAGAGCATTGTA+CGG | 0.587266 | 1.2:-22627278 | None:intergenic |
| GGATGCCTAGCAGCCAAAGA+GGG | 0.591116 | 1.2:+22637555 | MS.gene96430:CDS |
| CAGCATCATTAACAAGCTCC+CGG | 0.592343 | 1.2:-22634489 | None:intergenic |
| GAAATGTTGTGAAGGAAGCA+TGG | 0.592659 | 1.2:+22620901 | MS.gene96430:CDS |
| GTTTGAACTGCAAATATCAC+AGG | 0.593650 | 1.2:-22620685 | None:intergenic |
| GAATTTCAGATCCCAGAGCA+TGG | 0.595894 | 1.2:+22621073 | MS.gene96430:intron |
| AGAATTCTCCAATAAACAAG+TGG | 0.596268 | 1.2:-22635424 | None:intergenic |
| TATCTTTCCAATGATGACGG+TGG | 0.597073 | 1.2:+22623907 | MS.gene96430:CDS |
| AACTGAATGTTCAGAACTCG+AGG | 0.602101 | 1.2:-22626660 | None:intergenic |
| GCTGATTGAGATTATAGCGA+TGG | 0.603646 | 1.2:+22624715 | MS.gene96430:CDS |
| TCAAGCAATTAGAAAAGCCG+AGG | 0.611545 | 1.2:+22634534 | MS.gene96430:CDS |
| TATTTATGACAGAGACGCCG+TGG | 0.613388 | 1.2:+22619957 | MS.gene96430:CDS |
| GGTTATCATAATAGAAGACA+TGG | 0.614977 | 1.2:-22619426 | None:intergenic |
| TTGCAATCAACATGGTGAAG+CGG | 0.624952 | 1.2:-22632229 | None:intergenic |
| AGGATGCCTAGCAGCCAAAG+AGG | 0.626376 | 1.2:+22637554 | MS.gene96430:CDS |
| ATGGGCCAAAGCTGTCTATG+TGG | 0.634153 | 1.2:+22620386 | MS.gene96430:CDS |
| AATGCAGAAGCTGCACAAGC+TGG | 0.634189 | 1.2:+22634653 | MS.gene96430:intron |
| AGGCAGCAAAATTTGTCGTG+GGG | 0.635854 | 1.2:-22634736 | None:intergenic |
| GGTTAAAGTATTGGATACTG+TGG | 0.641308 | 1.2:+22618973 | MS.gene96430:CDS |
| TTGTTTGAAACATCTGCCAG+TGG | 0.641328 | 1.2:-22636674 | None:intergenic |
| CTTCATAAACCTGCTCGCAA+GGG | 0.644216 | 1.2:+22635138 | MS.gene96430:CDS |
| GAAGCCACTGATAGATGCTG+TGG | 0.646591 | 1.2:+22618635 | MS.gene96430:CDS |
| ATAGATGCTGTGGTTTGTGG+CGG | 0.653066 | 1.2:+22618645 | MS.gene96430:CDS |
| TAGATTGTCTGACACGTCTG+TGG | 0.655075 | 1.2:+22620341 | MS.gene96430:CDS |
| CTTAGGTGCATAGGTTCGAG+AGG | 0.655245 | 1.2:-22635006 | None:intergenic |
| CATGAAACTTCTGTGCAACA+TGG | 0.656236 | 1.2:-22620296 | None:intergenic |
| TTGACTTTGATGACCGAGTG+AGG | 0.656661 | 1.2:+22620643 | MS.gene96430:CDS |
| AGTACACCAAAACATATGCA+GGG | 0.657650 | 1.2:-22634240 | None:intergenic |
| CTGAGAGCATTGATGATCTG+CGG | 0.658654 | 1.2:+22633680 | MS.gene96430:CDS |
| GCCTGCAGGAGAAAGAAGAG+TGG | 0.659028 | 1.2:-22634436 | None:intergenic |
| TCAACTGATCCAGAATCAGA+CGG | 0.659939 | 1.2:-22635312 | None:intergenic |
| AACAACTTCAAAGATACATG+TGG | 0.665571 | 1.2:+22635492 | MS.gene96430:CDS |
| TTTGAGCGAGGTGAGATCCA+TGG | 0.668375 | 1.2:-22617367 | None:intergenic |
| ACATACCTTTGCAATCAACA+TGG | 0.676644 | 1.2:-22632237 | None:intergenic |
| ATTTATGACAGAGACGCCGT+GGG | 0.679070 | 1.2:+22619958 | MS.gene96430:CDS |
| ATCGGAGATGAGTTTGAGCG+AGG | 0.686621 | 1.2:-22617379 | None:intergenic |
| TATTTCCATCAACTTCTGTG+AGG | 0.695527 | 1.2:-22620861 | None:intergenic |
| CTCGCTCTATACAATGACGA+AGG | 0.699081 | 1.2:-22634756 | None:intergenic |
| ATTTGTGCTAGAAATAACAG+CGG | 0.705981 | 1.2:+22637709 | MS.gene96430:CDS |
| CAAACCACAGCATCTATCAG+TGG | 0.707630 | 1.2:-22618639 | None:intergenic |
| CTGAGATGTATCATGCAATG+AGG | 0.731981 | 1.2:-22627986 | None:intergenic |
| AGAATGCTACGGGAAAATGG+TGG | 0.732930 | 1.2:+22629543 | MS.gene96430:CDS |
| AAAGATAATCTAAAACACAG+TGG | 0.737618 | 1.2:-22623891 | None:intergenic |
| GTATAGAGCGAGTCTCACGA+AGG | 0.749587 | 1.2:+22634767 | MS.gene96430:CDS |
| ACTGATCCAGAATCAGACGG+AGG | 0.753799 | 1.2:-22635309 | None:intergenic |
| TGACCGAGTGAGGATGCAGG+CGG | 0.772188 | 1.2:+22620653 | MS.gene96430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 22617369 | 22637765 | 22617369 | ID=MS.gene96430 |
| chr1.2 | mRNA | 22617369 | 22637765 | 22617369 | ID=MS.gene96430.t1;Parent=MS.gene96430 |
| chr1.2 | exon | 22617369 | 22617464 | 22617369 | ID=MS.gene96430.t1.exon1;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22617369 | 22617464 | 22617369 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22618543 | 22618776 | 22618543 | ID=MS.gene96430.t1.exon2;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22618543 | 22618776 | 22618543 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22618902 | 22619083 | 22618902 | ID=MS.gene96430.t1.exon3;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22618902 | 22619083 | 22618902 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22619397 | 22619523 | 22619397 | ID=MS.gene96430.t1.exon4;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22619397 | 22619523 | 22619397 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22619856 | 22620083 | 22619856 | ID=MS.gene96430.t1.exon5;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22619856 | 22620083 | 22619856 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22620228 | 22620444 | 22620228 | ID=MS.gene96430.t1.exon6;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22620228 | 22620444 | 22620228 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22620622 | 22620767 | 22620622 | ID=MS.gene96430.t1.exon7;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22620622 | 22620767 | 22620622 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22620842 | 22620999 | 22620842 | ID=MS.gene96430.t1.exon8;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22620842 | 22620999 | 22620842 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22621082 | 22621231 | 22621082 | ID=MS.gene96430.t1.exon9;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22621082 | 22621231 | 22621082 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22621302 | 22621350 | 22621302 | ID=MS.gene96430.t1.exon10;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22621302 | 22621350 | 22621302 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22622555 | 22622743 | 22622555 | ID=MS.gene96430.t1.exon11;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22622555 | 22622743 | 22622555 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22623790 | 22623960 | 22623790 | ID=MS.gene96430.t1.exon12;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22623790 | 22623960 | 22623790 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22624626 | 22624765 | 22624626 | ID=MS.gene96430.t1.exon13;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22624626 | 22624765 | 22624626 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22626580 | 22626700 | 22626580 | ID=MS.gene96430.t1.exon14;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22626580 | 22626700 | 22626580 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22627214 | 22627354 | 22627214 | ID=MS.gene96430.t1.exon15;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22627214 | 22627354 | 22627214 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22627478 | 22627552 | 22627478 | ID=MS.gene96430.t1.exon16;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22627478 | 22627552 | 22627478 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22627719 | 22627832 | 22627719 | ID=MS.gene96430.t1.exon17;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22627719 | 22627832 | 22627719 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22627958 | 22628032 | 22627958 | ID=MS.gene96430.t1.exon18;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22627958 | 22628032 | 22627958 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22629450 | 22629577 | 22629450 | ID=MS.gene96430.t1.exon19;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22629450 | 22629577 | 22629450 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22632136 | 22632253 | 22632136 | ID=MS.gene96430.t1.exon20;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22632136 | 22632253 | 22632136 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22633574 | 22633708 | 22633574 | ID=MS.gene96430.t1.exon21;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22633574 | 22633708 | 22633574 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22634148 | 22634338 | 22634148 | ID=MS.gene96430.t1.exon22;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22634148 | 22634338 | 22634148 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22634435 | 22634582 | 22634435 | ID=MS.gene96430.t1.exon23;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22634435 | 22634582 | 22634435 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22634660 | 22634794 | 22634660 | ID=MS.gene96430.t1.exon24;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22634660 | 22634794 | 22634660 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22634927 | 22635028 | 22634927 | ID=MS.gene96430.t1.exon25;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22634927 | 22635028 | 22634927 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22635126 | 22635521 | 22635126 | ID=MS.gene96430.t1.exon26;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22635126 | 22635521 | 22635126 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22636665 | 22636714 | 22636665 | ID=MS.gene96430.t1.exon27;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22636665 | 22636714 | 22636665 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22637500 | 22637597 | 22637500 | ID=MS.gene96430.t1.exon28;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22637500 | 22637597 | 22637500 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| chr1.2 | exon | 22637701 | 22637765 | 22637701 | ID=MS.gene96430.t1.exon29;Parent=MS.gene96430.t1 |
| chr1.2 | CDS | 22637701 | 22637765 | 22637701 | ID=cds.MS.gene96430.t1;Parent=MS.gene96430.t1 |
| Gene Sequence |
| Protein sequence |