Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96829.t1 | XP_003607679.2 | 98.9 | 435 | 5 | 0 | 1 | 435 | 1 | 435 | 7.40E-254 | 885.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96829.t1 | Q9CXF4 | 30.2 | 298 | 150 | 5 | 29 | 323 | 294 | 536 | 3.2e-32 | 141.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96829.t1 | G7JF10 | 98.9 | 435 | 5 | 0 | 1 | 435 | 1 | 435 | 5.3e-254 | 885.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene96829 | MS.gene09785 | PPI |
| MS.gene96829 | MS.gene007485 | PPI |
| MS.gene22482 | MS.gene96829 | PPI |
| MS.gene96829 | MS.gene006750 | PPI |
| MS.gene061932 | MS.gene96829 | PPI |
| MS.gene87295 | MS.gene96829 | PPI |
| MS.gene069825 | MS.gene96829 | PPI |
| MS.gene96829 | MS.gene69823 | PPI |
| MS.gene007486 | MS.gene96829 | PPI |
| MS.gene96829 | MS.gene031553 | PPI |
| MS.gene007487 | MS.gene96829 | PPI |
| MS.gene018518 | MS.gene96829 | PPI |
| MS.gene031556 | MS.gene96829 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96829.t1 | MTR_4g081110 | 98.624 | 436 | 6 | 0 | 1 | 436 | 1 | 436 | 0.0 | 902 |
| MS.gene96829.t1 | MTR_2g083220 | 76.126 | 444 | 98 | 4 | 1 | 437 | 1 | 443 | 0.0 | 710 |
| MS.gene96829.t1 | MTR_1g069705 | 54.670 | 439 | 167 | 5 | 1 | 435 | 12 | 422 | 1.37e-176 | 500 |
| MS.gene96829.t1 | MTR_2g099185 | 46.114 | 193 | 101 | 2 | 151 | 343 | 340 | 529 | 2.21e-49 | 178 |
| MS.gene96829.t1 | MTR_2g099185 | 36.275 | 102 | 62 | 2 | 29 | 127 | 37 | 138 | 2.26e-11 | 66.2 |
| MS.gene96829.t1 | MTR_2g099185 | 46.199 | 171 | 91 | 1 | 151 | 321 | 340 | 509 | 3.09e-44 | 162 |
| MS.gene96829.t1 | MTR_2g099185 | 36.275 | 102 | 62 | 2 | 29 | 127 | 37 | 138 | 2.64e-11 | 65.9 |
| MS.gene96829.t1 | MTR_2g099185 | 45.977 | 174 | 93 | 1 | 151 | 324 | 345 | 517 | 4.95e-44 | 161 |
| MS.gene96829.t1 | MTR_2g099185 | 37.255 | 102 | 61 | 2 | 29 | 127 | 42 | 143 | 6.03e-12 | 67.8 |
| MS.gene96829.t1 | MTR_4g115090 | 30.342 | 234 | 113 | 4 | 184 | 415 | 434 | 619 | 1.34e-31 | 127 |
| MS.gene96829.t1 | MTR_3g092100 | 32.203 | 236 | 132 | 4 | 200 | 435 | 338 | 545 | 1.23e-30 | 124 |
| MS.gene96829.t1 | MTR_3g092100 | 35.507 | 138 | 72 | 4 | 28 | 163 | 64 | 186 | 8.18e-15 | 77.0 |
| MS.gene96829.t1 | MTR_1g007590 | 29.741 | 232 | 131 | 4 | 202 | 429 | 290 | 493 | 3.20e-29 | 119 |
| MS.gene96829.t1 | MTR_1g007590 | 29.741 | 232 | 131 | 4 | 202 | 429 | 385 | 588 | 5.83e-29 | 119 |
| MS.gene96829.t1 | MTR_1g007590 | 43.038 | 79 | 43 | 1 | 35 | 111 | 68 | 146 | 3.31e-14 | 75.1 |
| MS.gene96829.t1 | MTR_1g072400 | 56.140 | 57 | 25 | 0 | 196 | 252 | 47 | 103 | 6.84e-20 | 84.7 |
| MS.gene96829.t1 | MTR_3g083840 | 25.260 | 289 | 183 | 8 | 54 | 322 | 96 | 371 | 4.34e-19 | 89.4 |
| MS.gene96829.t1 | MTR_8g085300 | 27.682 | 289 | 176 | 9 | 54 | 322 | 107 | 382 | 6.26e-18 | 85.9 |
| MS.gene96829.t1 | MTR_5g065510 | 44.444 | 72 | 39 | 1 | 30 | 100 | 21 | 92 | 1.30e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96829.t1 | AT4G27100 | 70.136 | 442 | 117 | 4 | 1 | 436 | 1 | 433 | 0.0 | 617 |
| MS.gene96829.t1 | AT4G27100 | 70.455 | 440 | 115 | 4 | 1 | 434 | 1 | 431 | 0.0 | 617 |
| MS.gene96829.t1 | AT5G54780 | 71.028 | 428 | 112 | 3 | 1 | 424 | 1 | 420 | 0.0 | 601 |
| MS.gene96829.t1 | AT2G20440 | 56.492 | 439 | 169 | 7 | 1 | 438 | 7 | 424 | 4.06e-180 | 509 |
| MS.gene96829.t1 | AT2G20440 | 56.492 | 439 | 169 | 7 | 1 | 438 | 7 | 424 | 4.06e-180 | 509 |
| MS.gene96829.t1 | AT4G28550 | 55.760 | 434 | 170 | 5 | 1 | 433 | 7 | 419 | 1.74e-177 | 503 |
| MS.gene96829.t1 | AT2G20440 | 59.568 | 324 | 110 | 5 | 1 | 322 | 7 | 311 | 1.38e-138 | 401 |
| MS.gene96829.t1 | AT4G28550 | 58.255 | 321 | 115 | 3 | 1 | 320 | 7 | 309 | 7.45e-137 | 396 |
| MS.gene96829.t1 | AT4G28550 | 58.075 | 322 | 116 | 3 | 1 | 321 | 7 | 310 | 3.56e-136 | 394 |
| MS.gene96829.t1 | AT2G20440 | 54.711 | 329 | 128 | 6 | 110 | 438 | 1 | 308 | 6.51e-124 | 362 |
| MS.gene96829.t1 | AT3G59570 | 34.743 | 331 | 169 | 4 | 151 | 435 | 336 | 665 | 2.69e-54 | 192 |
| MS.gene96829.t1 | AT3G59570 | 39.048 | 105 | 63 | 1 | 16 | 119 | 31 | 135 | 2.22e-15 | 79.0 |
| MS.gene96829.t1 | AT2G43490 | 52.410 | 166 | 78 | 1 | 166 | 331 | 347 | 511 | 1.52e-50 | 182 |
| MS.gene96829.t1 | AT2G43490 | 35.385 | 130 | 81 | 2 | 19 | 145 | 34 | 163 | 4.07e-16 | 81.3 |
| MS.gene96829.t1 | AT2G43490 | 52.410 | 166 | 78 | 1 | 166 | 331 | 347 | 511 | 1.52e-50 | 182 |
| MS.gene96829.t1 | AT2G43490 | 35.385 | 130 | 81 | 2 | 19 | 145 | 34 | 163 | 4.07e-16 | 81.3 |
| MS.gene96829.t1 | AT2G43490 | 52.410 | 166 | 78 | 1 | 166 | 331 | 347 | 511 | 1.52e-50 | 182 |
| MS.gene96829.t1 | AT2G43490 | 35.385 | 130 | 81 | 2 | 19 | 145 | 34 | 163 | 4.07e-16 | 81.3 |
| MS.gene96829.t1 | AT2G43490 | 52.410 | 166 | 78 | 1 | 166 | 331 | 347 | 511 | 1.52e-50 | 182 |
| MS.gene96829.t1 | AT2G43490 | 35.385 | 130 | 81 | 2 | 19 | 145 | 34 | 163 | 4.07e-16 | 81.3 |
| MS.gene96829.t1 | AT2G43490 | 52.410 | 166 | 78 | 1 | 166 | 331 | 343 | 507 | 1.57e-50 | 182 |
| MS.gene96829.t1 | AT2G43490 | 37.903 | 124 | 74 | 2 | 25 | 145 | 36 | 159 | 4.36e-17 | 84.3 |
| MS.gene96829.t1 | AT2G43490 | 52.410 | 166 | 78 | 1 | 166 | 331 | 343 | 507 | 1.57e-50 | 182 |
| MS.gene96829.t1 | AT2G43490 | 37.903 | 124 | 74 | 2 | 25 | 145 | 36 | 159 | 4.36e-17 | 84.3 |
| MS.gene96829.t1 | AT2G43490 | 52.410 | 166 | 78 | 1 | 166 | 331 | 347 | 511 | 1.71e-50 | 182 |
| MS.gene96829.t1 | AT2G43490 | 35.385 | 130 | 81 | 2 | 19 | 145 | 34 | 163 | 4.10e-16 | 81.3 |
| MS.gene96829.t1 | AT2G43490 | 52.410 | 166 | 78 | 1 | 166 | 331 | 347 | 511 | 1.95e-50 | 182 |
| MS.gene96829.t1 | AT2G43490 | 35.385 | 130 | 81 | 2 | 19 | 145 | 34 | 163 | 3.21e-16 | 81.6 |
| MS.gene96829.t1 | AT3G59570 | 48.876 | 178 | 90 | 1 | 151 | 328 | 336 | 512 | 7.82e-49 | 177 |
| MS.gene96829.t1 | AT3G59570 | 38.318 | 107 | 65 | 1 | 14 | 119 | 29 | 135 | 2.35e-15 | 79.0 |
| MS.gene96829.t1 | AT3G59570 | 48.876 | 178 | 90 | 1 | 151 | 328 | 336 | 512 | 1.31e-48 | 177 |
| MS.gene96829.t1 | AT3G59570 | 39.048 | 105 | 63 | 1 | 16 | 119 | 31 | 135 | 2.50e-15 | 79.0 |
| MS.gene96829.t1 | AT5G24390 | 29.124 | 388 | 178 | 9 | 28 | 324 | 56 | 437 | 9.68e-42 | 155 |
| MS.gene96829.t1 | AT5G52580 | 30.178 | 338 | 169 | 7 | 1 | 335 | 336 | 609 | 4.82e-40 | 152 |
| MS.gene96829.t1 | AT5G52580 | 30.592 | 304 | 152 | 6 | 35 | 335 | 351 | 598 | 3.28e-39 | 150 |
| MS.gene96829.t1 | AT5G52580 | 30.592 | 304 | 152 | 6 | 35 | 335 | 345 | 592 | 3.80e-39 | 149 |
| MS.gene96829.t1 | AT5G41940 | 31.797 | 217 | 120 | 3 | 202 | 418 | 345 | 533 | 1.83e-30 | 124 |
| MS.gene96829.t1 | AT5G41940 | 42.500 | 80 | 44 | 1 | 33 | 110 | 87 | 166 | 3.17e-13 | 72.0 |
| MS.gene96829.t1 | AT3G49350 | 28.814 | 236 | 140 | 4 | 202 | 437 | 330 | 537 | 3.71e-28 | 117 |
| MS.gene96829.t1 | AT5G53570 | 30.290 | 241 | 134 | 6 | 202 | 438 | 338 | 548 | 1.09e-27 | 115 |
| MS.gene96829.t1 | AT5G53570 | 40.698 | 86 | 48 | 2 | 34 | 117 | 95 | 179 | 1.37e-12 | 70.1 |
| MS.gene96829.t1 | AT5G53570 | 29.876 | 241 | 135 | 5 | 202 | 438 | 365 | 575 | 1.13e-27 | 115 |
| MS.gene96829.t1 | AT5G53570 | 40.698 | 86 | 48 | 2 | 34 | 117 | 122 | 206 | 1.30e-12 | 70.1 |
| MS.gene96829.t1 | AT1G04830 | 27.562 | 283 | 169 | 9 | 66 | 329 | 125 | 390 | 5.35e-20 | 92.4 |
| MS.gene96829.t1 | AT1G04830 | 27.562 | 283 | 169 | 9 | 66 | 329 | 125 | 390 | 7.65e-20 | 92.0 |
| MS.gene96829.t1 | AT4G13730 | 26.182 | 275 | 161 | 8 | 68 | 324 | 131 | 381 | 1.66e-18 | 87.8 |
| MS.gene96829.t1 | AT4G13730 | 26.132 | 287 | 175 | 8 | 68 | 333 | 131 | 401 | 1.97e-18 | 87.4 |
| MS.gene96829.t1 | AT4G13730 | 26.619 | 278 | 167 | 8 | 68 | 324 | 131 | 392 | 2.76e-18 | 87.0 |
Find 102 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTCTTTGCTGTATTATT+AGG | 0.124425 | 4.3:+28909150 | None:intergenic |
| AAGAGAATTTGTCAAAATTA+TGG | 0.149953 | 4.3:-28908883 | MS.gene96829:CDS |
| CCTTCTTTGCTGTATTATTA+GGG | 0.221696 | 4.3:+28909151 | None:intergenic |
| ATGATGAAGCTGATGCTTTC+TGG | 0.239321 | 4.3:-28908614 | MS.gene96829:CDS |
| ATTCTCTCCGGAAGGGTATT+TGG | 0.245895 | 4.3:-28909826 | MS.gene96829:CDS |
| CCTATATGTTGATGAAGTTT+TGG | 0.247721 | 4.3:+28908211 | None:intergenic |
| ATGTTCCCAAGTCTAGATTT+AGG | 0.276545 | 4.3:-28910534 | MS.gene96829:CDS |
| TTAGAAAATAATCCAGAAAA+TGG | 0.279307 | 4.3:-28909210 | MS.gene96829:CDS |
| AATATGATCCCAACATGTTT+TGG | 0.285195 | 4.3:-28907605 | MS.gene96829:CDS |
| CATCAATTAGAGGAGAAGTT+TGG | 0.289829 | 4.3:-28909561 | MS.gene96829:CDS |
| AGAGACTCAACTAAACAATT+TGG | 0.302514 | 4.3:-28908257 | MS.gene96829:CDS |
| CAAACTTCTCCTCTAATTGA+TGG | 0.303432 | 4.3:+28909562 | None:intergenic |
| CTGTGATTCATTGTACCTTT+GGG | 0.309545 | 4.3:-28907935 | MS.gene96829:CDS |
| AGAGAATTTGTCAAAATTAT+GGG | 0.312562 | 4.3:-28908882 | MS.gene96829:CDS |
| AGCAACAAGGAAAATAGATA+TGG | 0.322455 | 4.3:+28907455 | None:intergenic |
| TCTGTGATTCATTGTACCTT+TGG | 0.322700 | 4.3:-28907936 | MS.gene96829:CDS |
| CATCTAGTCCTCGTGCTTGC+TGG | 0.325598 | 4.3:+28907400 | None:intergenic |
| CGCCAACTGTTTCCTCTTGT+AGG | 0.353650 | 4.3:-28909303 | MS.gene96829:CDS |
| TTGGGAACATCGGTGCATTC+CGG | 0.361184 | 4.3:+28910547 | None:intergenic |
| TTAAAGTCAATACGTCATTA+TGG | 0.362574 | 4.3:-28907537 | MS.gene96829:CDS |
| TGGGAACATCGGTGCATTCC+GGG | 0.368119 | 4.3:+28910548 | None:intergenic |
| TTTGCTGTATTATTAGGGCT+TGG | 0.377338 | 4.3:+28909156 | None:intergenic |
| CAGTTACCCCACGGTGGATT+CGG | 0.379343 | 4.3:+28909784 | None:intergenic |
| ATCAATTAGAGGAGAAGTTT+GGG | 0.387602 | 4.3:-28909560 | MS.gene96829:CDS |
| GAGAGAGAGAATATGAGAAA+TGG | 0.394621 | 4.3:-28907507 | MS.gene96829:CDS |
| CCGGAAGGGTATTTGGATAT+AGG | 0.401657 | 4.3:-28909819 | MS.gene96829:CDS |
| ATGTTAACTTTACATCAAAT+AGG | 0.410473 | 4.3:-28909102 | MS.gene96829:intron |
| TTTGGGATGTGGAGAGATCC+TGG | 0.416941 | 4.3:-28910601 | None:intergenic |
| CCAAAACTTCATCAACATAT+AGG | 0.420780 | 4.3:-28908211 | MS.gene96829:intron |
| AAGTTTCAACGCTGCCATAC+AGG | 0.425576 | 4.3:+28907217 | None:intergenic |
| CCTATATCCAAATACCCTTC+CGG | 0.439848 | 4.3:+28909819 | None:intergenic |
| CAGATATTGAATGACACAAA+TGG | 0.447976 | 4.3:-28907260 | MS.gene96829:CDS |
| GGAATCCATCCATCAATTAG+AGG | 0.453920 | 4.3:-28909571 | MS.gene96829:CDS |
| TTCATACATCCAAAACATGT+TGG | 0.460780 | 4.3:+28907596 | None:intergenic |
| TCATCGAGCAGTATTATCAT+AGG | 0.464171 | 4.3:+28908633 | None:intergenic |
| CCCTAATAATACAGCAAAGA+AGG | 0.467653 | 4.3:-28909151 | MS.gene96829:CDS |
| ATATTCTTGCTGTTTATGCT+AGG | 0.472923 | 4.3:-28908859 | MS.gene96829:CDS |
| CAAGTCTAGATTTAGGATCA+AGG | 0.473791 | 4.3:-28910527 | MS.gene96829:intron |
| TCATACATCCAAAACATGTT+GGG | 0.474205 | 4.3:+28907597 | None:intergenic |
| AAAGAATCAGCAGGAACTCC+AGG | 0.484131 | 4.3:+28910583 | None:intergenic |
| CTGTTTCCTCTTGTAGGAAG+TGG | 0.489158 | 4.3:-28909297 | MS.gene96829:CDS |
| AACATCGGTGCATTCCGGGC+GGG | 0.494642 | 4.3:+28910552 | None:intergenic |
| TGTTGGTGCACAGAGCATAT+TGG | 0.495820 | 4.3:-28908021 | MS.gene96829:intron |
| AAGAGATAAGGCAGCGCCGA+AGG | 0.498624 | 4.3:-28909489 | MS.gene96829:intron |
| TCAGGATGCAATATGCTGAA+TGG | 0.506458 | 4.3:-28909338 | MS.gene96829:intron |
| CTTGATCCTAAATCTAGACT+TGG | 0.511866 | 4.3:+28910528 | None:intergenic |
| GAAGTATTTAACAGATGATG+TGG | 0.512634 | 4.3:-28907635 | MS.gene96829:intron |
| AGAACCAATGGATCTTGAAT+CGG | 0.519372 | 4.3:+28909234 | None:intergenic |
| CTTCTCCTCTAATTGATGGA+TGG | 0.520804 | 4.3:+28909566 | None:intergenic |
| CGTGCTGCATTCTCTCCGGA+AGG | 0.525549 | 4.3:-28909834 | MS.gene96829:CDS |
| GTGGCGTGCTGCATTCTCTC+CGG | 0.528842 | 4.3:-28909838 | MS.gene96829:CDS |
| AGGAAAATAGATATGGGAAG+AGG | 0.531576 | 4.3:+28907462 | None:intergenic |
| TCTTTCCTCGAATGTACTCG+TGG | 0.533418 | 4.3:+28909513 | None:intergenic |
| TGATTCATTGTACCTTTGGG+AGG | 0.533545 | 4.3:-28907932 | MS.gene96829:intron |
| GCAACAAGGAAAATAGATAT+GGG | 0.536008 | 4.3:+28907456 | None:intergenic |
| ATAGATAATGATGTTGGCTA+TGG | 0.537992 | 4.3:-28908836 | MS.gene96829:CDS |
| CTTTCCTCGAATGTACTCGT+GGG | 0.538136 | 4.3:+28909514 | None:intergenic |
| ATTGTACCTCCTCAAGAAGT+AGG | 0.539196 | 4.3:-28909183 | MS.gene96829:CDS |
| CTTTCAACACACTAGCAACA+AGG | 0.544712 | 4.3:+28907442 | None:intergenic |
| CTCTAAGCCGAATCCACCGT+GGG | 0.546784 | 4.3:-28909791 | MS.gene96829:CDS |
| AAGGGTATTTGGATATAGGC+AGG | 0.550489 | 4.3:-28909815 | MS.gene96829:CDS |
| TCGAGGAAAGAGAAGAGATA+AGG | 0.553975 | 4.3:-28909501 | MS.gene96829:CDS |
| GTAAAACACTAAGTGAAAGA+AGG | 0.560988 | 4.3:-28909860 | MS.gene96829:CDS |
| GCTAGGATAGATAATGATGT+TGG | 0.562217 | 4.3:-28908842 | MS.gene96829:CDS |
| CTTGGAGCACCTACTTCTTG+AGG | 0.562938 | 4.3:+28909174 | None:intergenic |
| ACACCATCGTCGGTAACTAC+AGG | 0.563755 | 4.3:+28909258 | None:intergenic |
| TTCTTTCTATGAAACCCGCC+CGG | 0.566250 | 4.3:-28910566 | MS.gene96829:CDS |
| TGAACCCACGAGTACATTCG+AGG | 0.568758 | 4.3:-28909518 | MS.gene96829:CDS |
| AATGATGTTGGCTATGGTCA+AGG | 0.579514 | 4.3:-28908830 | MS.gene96829:intron |
| AGATGCACCAATAACAGTGT+GGG | 0.581528 | 4.3:-28908283 | MS.gene96829:CDS |
| AAAATAGATATGGGAAGAGG+AGG | 0.583193 | 4.3:+28907465 | None:intergenic |
| AATCTACCACTTCCTACAAG+AGG | 0.583193 | 4.3:+28909291 | None:intergenic |
| TGTACCGATTCAAGATCCAT+TGG | 0.585320 | 4.3:-28909238 | MS.gene96829:CDS |
| GTATTATCATAGGAGAGCAT+AGG | 0.593824 | 4.3:+28908643 | None:intergenic |
| AGAATCTGAAGAAACTGCTG+AGG | 0.595745 | 4.3:-28907574 | MS.gene96829:CDS |
| TTCCTACAAGAGGAAACAGT+TGG | 0.598223 | 4.3:+28909301 | None:intergenic |
| GATGCAATATGCTGAATGGA+AGG | 0.606804 | 4.3:-28909334 | MS.gene96829:CDS |
| AAGTATTTAACAGATGATGT+GGG | 0.607087 | 4.3:-28907634 | MS.gene96829:intron |
| GAACATCGGTGCATTCCGGG+CGG | 0.608173 | 4.3:+28910551 | None:intergenic |
| GTTTCATAGAAAGAATCAGC+AGG | 0.611829 | 4.3:+28910574 | None:intergenic |
| AAGGTACAATGAATCACAGA+AGG | 0.616443 | 4.3:+28907939 | None:intergenic |
| TTGATCCTAAATCTAGACTT+GGG | 0.619284 | 4.3:+28910529 | None:intergenic |
| GTGCTGCATTCTCTCCGGAA+GGG | 0.622634 | 4.3:-28909833 | MS.gene96829:CDS |
| AAATCTAGACTTGGGAACAT+CGG | 0.624918 | 4.3:+28910537 | None:intergenic |
| GATGCACCAATAACAGTGTG+GGG | 0.632868 | 4.3:-28908282 | MS.gene96829:CDS |
| GATTCGTACCGATAGGACAC+TGG | 0.634998 | 4.3:-28908921 | MS.gene96829:CDS |
| GAAGTTTGGGAATTTCTACT+CGG | 0.636274 | 4.3:-28909547 | MS.gene96829:CDS |
| TGGTGCACAGAGCATATTGG+TGG | 0.637467 | 4.3:-28908018 | MS.gene96829:intron |
| CAGATGCACCAATAACAGTG+TGG | 0.638420 | 4.3:-28908284 | MS.gene96829:CDS |
| AAGCTAAGCTAACCTCCCAA+AGG | 0.651555 | 4.3:+28907920 | None:intergenic |
| AGGACTAGATGATGTCGTCA+AGG | 0.651967 | 4.3:-28907388 | MS.gene96829:intron |
| TGCACAGAGCATATTGGTGG+AGG | 0.655267 | 4.3:-28908015 | MS.gene96829:intron |
| GGAGCACCTACTTCTTGAGG+AGG | 0.659262 | 4.3:+28909177 | None:intergenic |
| AAACACTAAGTGAAAGAAGG+TGG | 0.670093 | 4.3:-28909857 | MS.gene96829:CDS |
| ACACTACTCCAGCAAGCACG+AGG | 0.675122 | 4.3:-28907408 | MS.gene96829:CDS |
| TTGAATCGGTACACCATCGT+CGG | 0.682044 | 4.3:+28909248 | None:intergenic |
| ACTCTAAGCCGAATCCACCG+TGG | 0.704771 | 4.3:-28909792 | MS.gene96829:CDS |
| TTGACGTGATTCGTACCGAT+AGG | 0.705672 | 4.3:-28908928 | MS.gene96829:CDS |
| AAAATGCAGTTACCCCACGG+TGG | 0.705798 | 4.3:+28909778 | None:intergenic |
| ATGCACCAATAACAGTGTGG+GGG | 0.708289 | 4.3:-28908281 | MS.gene96829:CDS |
| GCACCTGTAGTTACCGACGA+TGG | 0.722742 | 4.3:-28909261 | MS.gene96829:CDS |
| TCTAAGCCGAATCCACCGTG+GGG | 0.782631 | 4.3:-28909790 | MS.gene96829:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTATTTTTATTTTAAA+TGG | - | chr4.3:28907457-28907476 | MS.gene96829:CDS | 0.0% |
| !! | GATTTATTTCATTATTAGTA+TGG | - | chr4.3:28909227-28909246 | MS.gene96829:CDS | 15.0% |
| !! | TATATTGTAACTTCTAATAA+TGG | + | chr4.3:28907659-28907678 | None:intergenic | 15.0% |
| !! | AAGAGAATTTGTCAAAATTA+TGG | - | chr4.3:28908890-28908909 | MS.gene96829:CDS | 20.0% |
| !! | AATAAAGATCATAAGAAACA+AGG | + | chr4.3:28909445-28909464 | None:intergenic | 20.0% |
| !! | ACTATAAATTATTTCCAATG+AGG | + | chr4.3:28910097-28910116 | None:intergenic | 20.0% |
| !! | ACTTCATTTACATGTTAATT+AGG | - | chr4.3:28908076-28908095 | MS.gene96829:intron | 20.0% |
| !! | AGAGAATTTGTCAAAATTAT+GGG | - | chr4.3:28908891-28908910 | MS.gene96829:CDS | 20.0% |
| !! | ATGTAAGACAAATTATTAGT+AGG | + | chr4.3:28908162-28908181 | None:intergenic | 20.0% |
| !! | ATGTTAACTTTACATCAAAT+AGG | - | chr4.3:28908671-28908690 | MS.gene96829:intron | 20.0% |
| !! | TAAAATTAGTGTATGTGATA+TGG | + | chr4.3:28907762-28907781 | None:intergenic | 20.0% |
| !! | TCATCATAAAATAATTCACA+TGG | - | chr4.3:28908777-28908796 | MS.gene96829:intron | 20.0% |
| !! | TTAATCTATGAATAAGTCAA+AGG | + | chr4.3:28909004-28909023 | None:intergenic | 20.0% |
| !! | TTAGAAAATAATCCAGAAAA+TGG | - | chr4.3:28908563-28908582 | MS.gene96829:intron | 20.0% |
| !! | TTCTTATATAAACACATTTC+AGG | - | chr4.3:28908820-28908839 | MS.gene96829:intron | 20.0% |
| !! | TTGAAACTAATGTAAATTTC+TGG | - | chr4.3:28909076-28909095 | MS.gene96829:intron | 20.0% |
| !! | TTTATCTTGTGAATAAAAGT+TGG | - | chr4.3:28908112-28908131 | MS.gene96829:intron | 20.0% |
| !!! | ATTATTGAAATTTTCAAACC+AGG | - | chr4.3:28908180-28908199 | MS.gene96829:intron | 20.0% |
| !!! | CATATTGTTTTGACATTTAA+AGG | - | chr4.3:28909617-28909636 | MS.gene96829:intron | 20.0% |
| !!! | GTTATCTTTTTATAATTTGC+AGG | - | chr4.3:28909098-28909117 | MS.gene96829:intron | 20.0% |
| !!! | TAACTTCTTTCTATATTTTC+AGG | - | chr4.3:28908417-28908436 | MS.gene96829:intron | 20.0% |
| !!! | TCTGAAAAGTATTAAATCAA+TGG | + | chr4.3:28910497-28910516 | None:intergenic | 20.0% |
| !!! | TTATTGAAATTTTCAAACCA+GGG | - | chr4.3:28908181-28908200 | MS.gene96829:intron | 20.0% |
| !!! | TTTACATTAGTTTCAAATTC+TGG | + | chr4.3:28909072-28909091 | None:intergenic | 20.0% |
| ! | AAAATGCAAAACTCTTAACA+TGG | + | chr4.3:28907284-28907303 | None:intergenic | 25.0% |
| ! | AAAGGAAAAAAGATTACCTT+CGG | + | chr4.3:28908303-28908322 | None:intergenic | 25.0% |
| ! | AACATTGAAGAACAAATTCA+AGG | + | chr4.3:28909593-28909612 | None:intergenic | 25.0% |
| ! | AAGGCATGTAACATAATATA+TGG | + | chr4.3:28909657-28909676 | None:intergenic | 25.0% |
| ! | AAGTATTTAACAGATGATGT+GGG | - | chr4.3:28910139-28910158 | MS.gene96829:intron | 25.0% |
| ! | ACAACTTATAAACACGTTAT+CGG | + | chr4.3:28907319-28907338 | None:intergenic | 25.0% |
| ! | AGTAGAATGTGATAGTAATT+AGG | + | chr4.3:28908333-28908352 | None:intergenic | 25.0% |
| ! | ATATGTTTGCATGTATGTAT+TGG | - | chr4.3:28907382-28907401 | MS.gene96829:intron | 25.0% |
| ! | CAATGTATATGTAAGAATGA+TGG | - | chr4.3:28907434-28907453 | MS.gene96829:CDS | 25.0% |
| ! | CACTATAATAGGTATACTAT+TGG | - | chr4.3:28908722-28908741 | MS.gene96829:intron | 25.0% |
| ! | CAGACAAAAAAGTAATTCAA+TGG | - | chr4.3:28908648-28908667 | MS.gene96829:CDS | 25.0% |
| ! | GTATTGGAATACAATAATGA+GGG | - | chr4.3:28909352-28909371 | MS.gene96829:intron | 25.0% |
| ! | TAAATGGAAACCTTATAGAA+GGG | - | chr4.3:28907473-28907492 | MS.gene96829:CDS | 25.0% |
| ! | TACAAAGACCTTAAATCTAA+AGG | + | chr4.3:28907837-28907856 | None:intergenic | 25.0% |
| ! | TAGCTTTCTTTGTTCATATA+TGG | - | chr4.3:28910460-28910479 | MS.gene96829:intron | 25.0% |
| ! | TAGTAATTAGGAGTTATGAA+AGG | + | chr4.3:28908321-28908340 | None:intergenic | 25.0% |
| ! | TATATTGTGCCAAATATCTT+TGG | - | chr4.3:28907551-28907570 | MS.gene96829:CDS | 25.0% |
| ! | TGAAACAATAACAAAACATG+AGG | + | chr4.3:28909299-28909318 | None:intergenic | 25.0% |
| ! | TGTAAAACACAACAATCTTA+AGG | + | chr4.3:28908361-28908380 | None:intergenic | 25.0% |
| ! | TGTATTGGAATACAATAATG+AGG | - | chr4.3:28909351-28909370 | MS.gene96829:intron | 25.0% |
| ! | TTAAAGTCAATACGTCATTA+TGG | - | chr4.3:28910236-28910255 | MS.gene96829:intron | 25.0% |
| ! | TTAAATGGAAACCTTATAGA+AGG | - | chr4.3:28907472-28907491 | MS.gene96829:CDS | 25.0% |
| ! | TTGAGATTCCTTTAGATTTA+AGG | - | chr4.3:28907826-28907845 | MS.gene96829:intron | 25.0% |
| ! | TTGCATAAATTAGAAACAGT+TGG | - | chr4.3:28910031-28910050 | MS.gene96829:intron | 25.0% |
| ! | TTTGCTACAGAATACAAAAA+AGG | + | chr4.3:28909676-28909695 | None:intergenic | 25.0% |
| !! | ACTAGAAAATTCTTCAAGTT+GGG | + | chr4.3:28909332-28909351 | None:intergenic | 25.0% |
| !! | ATATATCAAGTTTTCCTCAT+TGG | - | chr4.3:28910080-28910099 | MS.gene96829:intron | 25.0% |
| !! | TATGAACTGTCTTTTAATGT+TGG | - | chr4.3:28909735-28909754 | MS.gene96829:intron | 25.0% |
| !! | TATTAGTATGGTCTTAATCA+TGG | - | chr4.3:28909239-28909258 | MS.gene96829:CDS | 25.0% |
| !! | TTATTTTCTAACAGAACCAA+TGG | + | chr4.3:28908554-28908573 | None:intergenic | 25.0% |
| !!! | AACAAAGTTGAACTTTTTTG+TGG | + | chr4.3:28910419-28910438 | None:intergenic | 25.0% |
| !!! | AAGTTTTGGATCAATTACTT+GGG | + | chr4.3:28909551-28909570 | None:intergenic | 25.0% |
| !!! | TGAAGAATTTTCTAGTGTAT+TGG | - | chr4.3:28909336-28909355 | MS.gene96829:CDS | 25.0% |
| !!! | TTATTGTGATTTTTAAAGCG+AGG | - | chr4.3:28909460-28909479 | MS.gene96829:intron | 25.0% |
| !!! | TTCTAATAATGGATTCTTGT+AGG | + | chr4.3:28907648-28907667 | None:intergenic | 25.0% |
| AGAGACTCAACTAAACAATT+TGG | - | chr4.3:28909516-28909535 | MS.gene96829:CDS | 30.0% | |
| AGCAACAAGGAAAATAGATA+TGG | + | chr4.3:28910321-28910340 | None:intergenic | 30.0% | |
| AGTTCTATCACAAACTTGTA+TGG | + | chr4.3:28907691-28907710 | None:intergenic | 30.0% | |
| AGTTCTCAATGCACTATAAT+AGG | - | chr4.3:28908711-28908730 | MS.gene96829:intron | 30.0% | |
| ATAAAAAACCAGTGTCCTAT+CGG | + | chr4.3:28908863-28908882 | None:intergenic | 30.0% | |
| ATCAATTAGAGGAGAAGTTT+GGG | - | chr4.3:28908213-28908232 | MS.gene96829:CDS | 30.0% | |
| CACTAGAAAATTCTTCAAGT+TGG | + | chr4.3:28909333-28909352 | None:intergenic | 30.0% | |
| CAGATATTGAATGACACAAA+TGG | - | chr4.3:28910513-28910532 | MS.gene96829:intron | 30.0% | |
| CCAAAACTTCATCAACATAT+AGG | - | chr4.3:28909562-28909581 | MS.gene96829:CDS | 30.0% | |
| GAGGAAAACTTGATATATGA+AGG | + | chr4.3:28910078-28910097 | None:intergenic | 30.0% | |
| GATAACGTGTTTATAAGTTG+TGG | - | chr4.3:28907318-28907337 | MS.gene96829:intron | 30.0% | |
| GCAACAAGGAAAATAGATAT+GGG | + | chr4.3:28910320-28910339 | None:intergenic | 30.0% | |
| GCATGTAACATAATATATGG+AGG | + | chr4.3:28909654-28909673 | None:intergenic | 30.0% | |
| GTAAAACACTAAGTGAAAGA+AGG | - | chr4.3:28907913-28907932 | MS.gene96829:intron | 30.0% | |
| TCATACATCCAAAACATGTT+GGG | + | chr4.3:28910179-28910198 | None:intergenic | 30.0% | |
| TGATCAAATGTGAAACTCAA+TGG | + | chr4.3:28907609-28907628 | None:intergenic | 30.0% | |
| TGCCATGGCATAATAAAAAT+TGG | + | chr4.3:28909970-28909989 | None:intergenic | 30.0% | |
| TTCATACATCCAAAACATGT+TGG | + | chr4.3:28910180-28910199 | None:intergenic | 30.0% | |
| TTGATCCTAAATCTAGACTT+GGG | + | chr4.3:28907247-28907266 | None:intergenic | 30.0% | |
| ! | AATATGATCCCAACATGTTT+TGG | - | chr4.3:28910168-28910187 | MS.gene96829:intron | 30.0% |
| ! | ACCTTCTTTGCTGTATTATT+AGG | + | chr4.3:28908626-28908645 | None:intergenic | 30.0% |
| ! | ATAGATAATGATGTTGGCTA+TGG | - | chr4.3:28908937-28908956 | MS.gene96829:intron | 30.0% |
| ! | CCTTCTTTGCTGTATTATTA+GGG | + | chr4.3:28908625-28908644 | None:intergenic | 30.0% |
| ! | GAAGTATTTAACAGATGATG+TGG | - | chr4.3:28910138-28910157 | MS.gene96829:intron | 30.0% |
| ! | GTCCAATTTTTATTATGCCA+TGG | - | chr4.3:28909965-28909984 | MS.gene96829:intron | 30.0% |
| ! | GTTCATATATGGATTGACTT+TGG | - | chr4.3:28910471-28910490 | MS.gene96829:intron | 30.0% |
| !! | AATGGTTCTAATCATGATGA+TGG | - | chr4.3:28907501-28907520 | MS.gene96829:CDS | 30.0% |
| !! | ATATTCTTGCTGTTTATGCT+AGG | - | chr4.3:28908914-28908933 | MS.gene96829:CDS | 30.0% |
| !! | CCTATATGTTGATGAAGTTT+TGG | + | chr4.3:28909565-28909584 | None:intergenic | 30.0% |
| !!! | GAAGTTTTGGATCAATTACT+TGG | + | chr4.3:28909552-28909571 | None:intergenic | 30.0% |
| AAAATAGATATGGGAAGAGG+AGG | + | chr4.3:28910311-28910330 | None:intergenic | 35.0% | |
| AAACACTAAGTGAAAGAAGG+TGG | - | chr4.3:28907916-28907935 | MS.gene96829:intron | 35.0% | |
| AAATCTAGACTTGGGAACAT+CGG | + | chr4.3:28907239-28907258 | None:intergenic | 35.0% | |
| AAGGTACAATGAATCACAGA+AGG | + | chr4.3:28909837-28909856 | None:intergenic | 35.0% | |
| ACGTGTTTATAAGTTGTGGA+CGG | - | chr4.3:28907322-28907341 | MS.gene96829:intron | 35.0% | |
| AGAACCAATGGATCTTGAAT+CGG | + | chr4.3:28908542-28908561 | None:intergenic | 35.0% | |
| AGGAAAATAGATATGGGAAG+AGG | + | chr4.3:28910314-28910333 | None:intergenic | 35.0% | |
| ATGTTCCCAAGTCTAGATTT+AGG | - | chr4.3:28907239-28907258 | MS.gene96829:CDS | 35.0% | |
| CAAACTTCTCCTCTAATTGA+TGG | + | chr4.3:28908214-28908233 | None:intergenic | 35.0% | |
| CATCAATTAGAGGAGAAGTT+TGG | - | chr4.3:28908212-28908231 | MS.gene96829:CDS | 35.0% | |
| CCCTAATAATACAGCAAAGA+AGG | - | chr4.3:28908622-28908641 | MS.gene96829:CDS | 35.0% | |
| CGTTACAAGCCAAAGATATT+TGG | + | chr4.3:28907563-28907582 | None:intergenic | 35.0% | |
| CTGTGATTCATTGTACCTTT+GGG | - | chr4.3:28909838-28909857 | MS.gene96829:CDS | 35.0% | |
| CTTGATCCTAAATCTAGACT+TGG | + | chr4.3:28907248-28907267 | None:intergenic | 35.0% | |
| GAAGTTTGGGAATTTCTACT+CGG | - | chr4.3:28908226-28908245 | MS.gene96829:CDS | 35.0% | |
| GAGAGAGAGAATATGAGAAA+TGG | - | chr4.3:28910266-28910285 | MS.gene96829:intron | 35.0% | |
| GCTAGGATAGATAATGATGT+TGG | - | chr4.3:28908931-28908950 | MS.gene96829:CDS | 35.0% | |
| GTTTCATAGAAAGAATCAGC+AGG | + | chr4.3:28907202-28907221 | None:intergenic | 35.0% | |
| TCATCGAGCAGTATTATCAT+AGG | + | chr4.3:28909143-28909162 | None:intergenic | 35.0% | |
| TCTGTGATTCATTGTACCTT+TGG | - | chr4.3:28909837-28909856 | MS.gene96829:CDS | 35.0% | |
| ! | CAAGTCTAGATTTAGGATCA+AGG | - | chr4.3:28907246-28907265 | MS.gene96829:CDS | 35.0% |
| ! | GTATTATCATAGGAGAGCAT+AGG | + | chr4.3:28909133-28909152 | None:intergenic | 35.0% |
| ! | TTTGCTGTATTATTAGGGCT+TGG | + | chr4.3:28908620-28908639 | None:intergenic | 35.0% |
| !!! | ACTAGTTTTTGTTGTTCTGC+AGG | - | chr4.3:28907887-28907906 | MS.gene96829:intron | 35.0% |
| AATCTACCACTTCCTACAAG+AGG | + | chr4.3:28908485-28908504 | None:intergenic | 40.0% | |
| AGAATCTGAAGAAACTGCTG+AGG | - | chr4.3:28910199-28910218 | MS.gene96829:intron | 40.0% | |
| AGATGCACCAATAACAGTGT+GGG | - | chr4.3:28909490-28909509 | MS.gene96829:CDS | 40.0% | |
| AGATGCCAAAAAAGCCTGTA+TGG | - | chr4.3:28910542-28910561 | MS.gene96829:CDS | 40.0% | |
| ATGATGAAGCTGATGCTTTC+TGG | - | chr4.3:28909159-28909178 | MS.gene96829:CDS | 40.0% | |
| ATGCATACGATTGCTGCATT+AGG | + | chr4.3:28907793-28907812 | None:intergenic | 40.0% | |
| ATTGTACCTCCTCAAGAAGT+AGG | - | chr4.3:28908590-28908609 | MS.gene96829:CDS | 40.0% | |
| CCATTGTTCACCCTTCTATA+AGG | + | chr4.3:28907486-28907505 | None:intergenic | 40.0% | |
| CCTATATCCAAATACCCTTC+CGG | + | chr4.3:28907957-28907976 | None:intergenic | 40.0% | |
| CCTTATAGAAGGGTGAACAA+TGG | - | chr4.3:28907483-28907502 | MS.gene96829:CDS | 40.0% | |
| CTTCTCCTCTAATTGATGGA+TGG | + | chr4.3:28908210-28908229 | None:intergenic | 40.0% | |
| CTTTCAACACACTAGCAACA+AGG | + | chr4.3:28910334-28910353 | None:intergenic | 40.0% | |
| GACTCAATGTTCATCTGCAT+GGG | + | chr4.3:28909909-28909928 | None:intergenic | 40.0% | |
| GATGCAATATGCTGAATGGA+AGG | - | chr4.3:28908439-28908458 | MS.gene96829:intron | 40.0% | |
| GATTCTTGTAGGCACAAATG+GGG | + | chr4.3:28907637-28907656 | None:intergenic | 40.0% | |
| GCAATGAAGAAAATGTGCCA+TGG | + | chr4.3:28909985-28910004 | None:intergenic | 40.0% | |
| GGAATCCATCCATCAATTAG+AGG | - | chr4.3:28908202-28908221 | MS.gene96829:intron | 40.0% | |
| GGACAATGTATGCATACTGA+GGG | + | chr4.3:28909949-28909968 | None:intergenic | 40.0% | |
| GGATTCTTGTAGGCACAAAT+GGG | + | chr4.3:28907638-28907657 | None:intergenic | 40.0% | |
| TCAGGATGCAATATGCTGAA+TGG | - | chr4.3:28908435-28908454 | MS.gene96829:intron | 40.0% | |
| TCGAGGAAAGAGAAGAGATA+AGG | - | chr4.3:28908272-28908291 | MS.gene96829:CDS | 40.0% | |
| TGACTCAATGTTCATCTGCA+TGG | + | chr4.3:28909910-28909929 | None:intergenic | 40.0% | |
| TGATTCATTGTACCTTTGGG+AGG | - | chr4.3:28909841-28909860 | MS.gene96829:CDS | 40.0% | |
| TGCATACGATTGCTGCATTA+GGG | + | chr4.3:28907792-28907811 | None:intergenic | 40.0% | |
| TGGACAATGTATGCATACTG+AGG | + | chr4.3:28909950-28909969 | None:intergenic | 40.0% | |
| TGGATTCTTGTAGGCACAAA+TGG | + | chr4.3:28907639-28907658 | None:intergenic | 40.0% | |
| TTCCTACAAGAGGAAACAGT+TGG | + | chr4.3:28908475-28908494 | None:intergenic | 40.0% | |
| TTGAAAATGCAGTTACCCCA+CGG | + | chr4.3:28908001-28908020 | None:intergenic | 40.0% | |
| ! | AATGATGTTGGCTATGGTCA+AGG | - | chr4.3:28908943-28908962 | MS.gene96829:intron | 40.0% |
| ! | GGTACAATCACTCCATTTTC+TGG | + | chr4.3:28908578-28908597 | None:intergenic | 40.0% |
| ! | TAATTGATGGATGGATTCCC+TGG | + | chr4.3:28908201-28908220 | None:intergenic | 40.0% |
| !! | AAGGGTATTTGGATATAGGC+AGG | - | chr4.3:28907958-28907977 | MS.gene96829:CDS | 40.0% |
| !! | GTGACTATCTGTTCGCTTTT+CGG | - | chr4.3:28909780-28909799 | MS.gene96829:intron | 40.0% |
| !! | GTTCGCTTTTCGGATGTTAA+TGG | - | chr4.3:28909790-28909809 | MS.gene96829:intron | 40.0% |
| !! | TGTACCGATTCAAGATCCAT+TGG | - | chr4.3:28908535-28908554 | MS.gene96829:intron | 40.0% |
| AAAGAATCAGCAGGAACTCC+AGG | + | chr4.3:28907193-28907212 | None:intergenic | 45.0% | |
| AAGCTAAGCTAACCTCCCAA+AGG | + | chr4.3:28909856-28909875 | None:intergenic | 45.0% | |
| AAGTTTCAACGCTGCCATAC+AGG | + | chr4.3:28910559-28910578 | None:intergenic | 45.0% | |
| AGGACTAGATGATGTCGTCA+AGG | - | chr4.3:28910385-28910404 | MS.gene96829:intron | 45.0% | |
| ATGCACCAATAACAGTGTGG+GGG | - | chr4.3:28909492-28909511 | MS.gene96829:CDS | 45.0% | |
| CAGATGCACCAATAACAGTG+TGG | - | chr4.3:28909489-28909508 | MS.gene96829:intron | 45.0% | |
| CTGTTTCCTCTTGTAGGAAG+TGG | - | chr4.3:28908476-28908495 | MS.gene96829:intron | 45.0% | |
| CTTTCCTCGAATGTACTCGT+GGG | + | chr4.3:28908262-28908281 | None:intergenic | 45.0% | |
| GATGCACCAATAACAGTGTG+GGG | - | chr4.3:28909491-28909510 | MS.gene96829:CDS | 45.0% | |
| TCTTTCCTCGAATGTACTCG+TGG | + | chr4.3:28908263-28908282 | None:intergenic | 45.0% | |
| TGTTGGTGCACAGAGCATAT+TGG | - | chr4.3:28909752-28909771 | MS.gene96829:intron | 45.0% | |
| TTCTTTCTATGAAACCCGCC+CGG | - | chr4.3:28907207-28907226 | MS.gene96829:CDS | 45.0% | |
| TTGAATCGGTACACCATCGT+CGG | + | chr4.3:28908528-28908547 | None:intergenic | 45.0% | |
| ! | TTGACGTGATTCGTACCGAT+AGG | - | chr4.3:28908845-28908864 | MS.gene96829:CDS | 45.0% |
| !! | ATTCTCTCCGGAAGGGTATT+TGG | - | chr4.3:28907947-28907966 | MS.gene96829:CDS | 45.0% |
| !! | CCGGAAGGGTATTTGGATAT+AGG | - | chr4.3:28907954-28907973 | MS.gene96829:CDS | 45.0% |
| !!! | GTTTTTGTTGTTCTGCAGGC+TGG | - | chr4.3:28907891-28907910 | MS.gene96829:intron | 45.0% |
| AAAATGCAGTTACCCCACGG+TGG | + | chr4.3:28907998-28908017 | None:intergenic | 50.0% | |
| ACACCATCGTCGGTAACTAC+AGG | + | chr4.3:28908518-28908537 | None:intergenic | 50.0% | |
| CGCCAACTGTTTCCTCTTGT+AGG | - | chr4.3:28908470-28908489 | MS.gene96829:intron | 50.0% | |
| CTCTACCCCCACACTGTTAT+TGG | + | chr4.3:28909500-28909519 | None:intergenic | 50.0% | |
| TGAACCCACGAGTACATTCG+AGG | - | chr4.3:28908255-28908274 | MS.gene96829:CDS | 50.0% | |
| TGCACAGAGCATATTGGTGG+AGG | - | chr4.3:28909758-28909777 | MS.gene96829:intron | 50.0% | |
| TGGTGCACAGAGCATATTGG+TGG | - | chr4.3:28909755-28909774 | MS.gene96829:intron | 50.0% | |
| TTGGGAACATCGGTGCATTC+CGG | + | chr4.3:28907229-28907248 | None:intergenic | 50.0% | |
| ! | CTTGGAGCACCTACTTCTTG+AGG | + | chr4.3:28908602-28908621 | None:intergenic | 50.0% |
| ! | GATTCGTACCGATAGGACAC+TGG | - | chr4.3:28908852-28908871 | MS.gene96829:CDS | 50.0% |
| !!! | CGCTGCCATACAGGCTTTTT+TGG | + | chr4.3:28910550-28910569 | None:intergenic | 50.0% |
| ACACTACTCCAGCAAGCACG+AGG | - | chr4.3:28910365-28910384 | MS.gene96829:intron | 55.0% | |
| ACTCTAAGCCGAATCCACCG+TGG | - | chr4.3:28907981-28908000 | MS.gene96829:CDS | 55.0% | |
| CATCTAGTCCTCGTGCTTGC+TGG | + | chr4.3:28910376-28910395 | None:intergenic | 55.0% | |
| CTCTAAGCCGAATCCACCGT+GGG | - | chr4.3:28907982-28908001 | MS.gene96829:CDS | 55.0% | |
| GCACCTGTAGTTACCGACGA+TGG | - | chr4.3:28908512-28908531 | MS.gene96829:intron | 55.0% | |
| GTGCTGCATTCTCTCCGGAA+GGG | - | chr4.3:28907940-28907959 | MS.gene96829:CDS | 55.0% | |
| TCTAAGCCGAATCCACCGTG+GGG | - | chr4.3:28907983-28908002 | MS.gene96829:CDS | 55.0% | |
| TGGGAACATCGGTGCATTCC+GGG | + | chr4.3:28907228-28907247 | None:intergenic | 55.0% | |
| ! | AAGAGATAAGGCAGCGCCGA+AGG | - | chr4.3:28908284-28908303 | MS.gene96829:CDS | 55.0% |
| ! | CAGTTACCCCACGGTGGATT+CGG | + | chr4.3:28907992-28908011 | None:intergenic | 55.0% |
| ! | GGAGCACCTACTTCTTGAGG+AGG | + | chr4.3:28908599-28908618 | None:intergenic | 55.0% |
| AACATCGGTGCATTCCGGGC+GGG | + | chr4.3:28907224-28907243 | None:intergenic | 60.0% | |
| CGTGCTGCATTCTCTCCGGA+AGG | - | chr4.3:28907939-28907958 | MS.gene96829:CDS | 60.0% | |
| GAACATCGGTGCATTCCGGG+CGG | + | chr4.3:28907225-28907244 | None:intergenic | 60.0% | |
| GTGGCGTGCTGCATTCTCTC+CGG | - | chr4.3:28907935-28907954 | MS.gene96829:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 28907178 | 28910617 | 28907178 | ID=MS.gene96829 |
| chr4.3 | mRNA | 28907178 | 28910617 | 28907178 | ID=MS.gene96829.t1;Parent=MS.gene96829 |
| chr4.3 | exon | 28910528 | 28910617 | 28910528 | ID=MS.gene96829.t1.exon1;Parent=MS.gene96829.t1 |
| chr4.3 | CDS | 28910528 | 28910617 | 28910528 | ID=cds.MS.gene96829.t1;Parent=MS.gene96829.t1 |
| chr4.3 | exon | 28909791 | 28909886 | 28909791 | ID=MS.gene96829.t1.exon2;Parent=MS.gene96829.t1 |
| chr4.3 | CDS | 28909791 | 28909886 | 28909791 | ID=cds.MS.gene96829.t1;Parent=MS.gene96829.t1 |
| chr4.3 | exon | 28909490 | 28909593 | 28909490 | ID=MS.gene96829.t1.exon3;Parent=MS.gene96829.t1 |
| chr4.3 | CDS | 28909490 | 28909593 | 28909490 | ID=cds.MS.gene96829.t1;Parent=MS.gene96829.t1 |
| chr4.3 | exon | 28909103 | 28909356 | 28909103 | ID=MS.gene96829.t1.exon4;Parent=MS.gene96829.t1 |
| chr4.3 | CDS | 28909103 | 28909356 | 28909103 | ID=cds.MS.gene96829.t1;Parent=MS.gene96829.t1 |
| chr4.3 | exon | 28908831 | 28908953 | 28908831 | ID=MS.gene96829.t1.exon5;Parent=MS.gene96829.t1 |
| chr4.3 | CDS | 28908831 | 28908953 | 28908831 | ID=cds.MS.gene96829.t1;Parent=MS.gene96829.t1 |
| chr4.3 | exon | 28908587 | 28908675 | 28908587 | ID=MS.gene96829.t1.exon6;Parent=MS.gene96829.t1 |
| chr4.3 | CDS | 28908587 | 28908675 | 28908587 | ID=cds.MS.gene96829.t1;Parent=MS.gene96829.t1 |
| chr4.3 | exon | 28908212 | 28908317 | 28908212 | ID=MS.gene96829.t1.exon7;Parent=MS.gene96829.t1 |
| chr4.3 | CDS | 28908212 | 28908317 | 28908212 | ID=cds.MS.gene96829.t1;Parent=MS.gene96829.t1 |
| chr4.3 | exon | 28907933 | 28908030 | 28907933 | ID=MS.gene96829.t1.exon8;Parent=MS.gene96829.t1 |
| chr4.3 | CDS | 28907933 | 28908030 | 28907933 | ID=cds.MS.gene96829.t1;Parent=MS.gene96829.t1 |
| chr4.3 | exon | 28907389 | 28907643 | 28907389 | ID=MS.gene96829.t1.exon9;Parent=MS.gene96829.t1 |
| chr4.3 | CDS | 28907389 | 28907643 | 28907389 | ID=cds.MS.gene96829.t1;Parent=MS.gene96829.t1 |
| chr4.3 | exon | 28907178 | 28907279 | 28907178 | ID=MS.gene96829.t1.exon10;Parent=MS.gene96829.t1 |
| chr4.3 | CDS | 28907178 | 28907279 | 28907178 | ID=cds.MS.gene96829.t1;Parent=MS.gene96829.t1 |
| Gene Sequence |
| Protein sequence |
