Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97293.t1 | XP_003621654.1 | 95.9 | 390 | 15 | 1 | 1 | 390 | 1 | 389 | 2.60E-178 | 634.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97293.t1 | O80630 | 44.7 | 380 | 137 | 8 | 15 | 389 | 8 | 319 | 1.8e-74 | 281.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97293.t1 | G7KSY8 | 95.9 | 390 | 15 | 1 | 1 | 390 | 1 | 389 | 1.9e-178 | 634.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene97293 | 0.812701 | 3.71E-51 | -1.69E-46 |
| MS.gene051996 | MS.gene97293 | 0.81184 | 5.72E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene97293 | 0.812724 | 3.67E-51 | -1.69E-46 |
| MS.gene052223 | MS.gene97293 | 0.836448 | 9.30E-57 | -1.69E-46 |
| MS.gene054277 | MS.gene97293 | 0.823567 | 1.29E-53 | -1.69E-46 |
| MS.gene054742 | MS.gene97293 | 0.842549 | 2.42E-58 | -1.69E-46 |
| MS.gene055601 | MS.gene97293 | 0.806935 | 6.46E-50 | -1.69E-46 |
| MS.gene056330 | MS.gene97293 | 0.885856 | 5.67E-72 | -1.69E-46 |
| MS.gene056690 | MS.gene97293 | 0.821761 | 3.40E-53 | -1.69E-46 |
| MS.gene056691 | MS.gene97293 | 0.831733 | 1.41E-55 | -1.69E-46 |
| MS.gene056899 | MS.gene97293 | 0.816473 | 5.43E-52 | -1.69E-46 |
| MS.gene056920 | MS.gene97293 | 0.856321 | 3.48E-62 | -1.69E-46 |
| MS.gene056922 | MS.gene97293 | 0.848258 | 6.87E-60 | -1.69E-46 |
| MS.gene056923 | MS.gene97293 | 0.840774 | 7.10E-58 | -1.69E-46 |
| MS.gene056924 | MS.gene97293 | 0.846391 | 2.24E-59 | -1.69E-46 |
| MS.gene060087 | MS.gene97293 | 0.836982 | 6.80E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97293.t1 | MTR_7g021300 | 95.385 | 390 | 17 | 1 | 1 | 390 | 1 | 389 | 0.0 | 721 |
| MS.gene97293.t1 | MTR_1g115510 | 61.809 | 398 | 99 | 7 | 1 | 390 | 1 | 353 | 2.41e-153 | 437 |
| MS.gene97293.t1 | MTR_4g062460 | 45.041 | 242 | 115 | 6 | 152 | 388 | 29 | 257 | 5.75e-59 | 192 |
| MS.gene97293.t1 | MTR_4g062520 | 40.580 | 276 | 149 | 7 | 117 | 389 | 39 | 302 | 5.29e-43 | 152 |
| MS.gene97293.t1 | MTR_4g062470 | 42.797 | 236 | 120 | 6 | 157 | 389 | 80 | 303 | 8.00e-43 | 152 |
| MS.gene97293.t1 | MTR_1g046800 | 38.494 | 239 | 117 | 8 | 156 | 388 | 34 | 248 | 1.38e-38 | 139 |
| MS.gene97293.t1 | MTR_1g046500 | 36.214 | 243 | 117 | 6 | 156 | 388 | 34 | 248 | 2.05e-37 | 136 |
| MS.gene97293.t1 | MTR_1g046490 | 34.034 | 238 | 131 | 5 | 156 | 388 | 18 | 234 | 1.25e-33 | 125 |
| MS.gene97293.t1 | MTR_1g115515 | 40.945 | 127 | 66 | 3 | 268 | 389 | 114 | 236 | 5.20e-21 | 91.3 |
| MS.gene97293.t1 | MTR_4g122110 | 35.294 | 102 | 63 | 1 | 264 | 365 | 60 | 158 | 2.68e-12 | 65.5 |
| MS.gene97293.t1 | MTR_1g054525 | 31.944 | 144 | 84 | 5 | 247 | 388 | 58 | 189 | 5.15e-12 | 64.7 |
| MS.gene97293.t1 | MTR_4g122130 | 31.624 | 117 | 74 | 3 | 250 | 365 | 47 | 158 | 2.62e-11 | 62.4 |
| MS.gene97293.t1 | MTR_7g093850 | 36.434 | 129 | 72 | 7 | 262 | 388 | 71 | 191 | 6.39e-11 | 61.6 |
| MS.gene97293.t1 | MTR_4g013320 | 34.167 | 120 | 66 | 5 | 272 | 388 | 87 | 196 | 8.96e-11 | 61.2 |
| MS.gene97293.t1 | MTR_7g093830 | 36.434 | 129 | 72 | 7 | 262 | 388 | 70 | 190 | 9.47e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97293.t1 | AT2G39430 | 61.345 | 238 | 88 | 4 | 156 | 389 | 82 | 319 | 7.59e-91 | 276 |
| MS.gene97293.t1 | AT3G55230 | 58.475 | 236 | 94 | 4 | 158 | 389 | 67 | 302 | 8.45e-83 | 255 |
| MS.gene97293.t1 | AT1G07730 | 44.255 | 235 | 113 | 5 | 163 | 389 | 164 | 388 | 2.08e-51 | 177 |
| MS.gene97293.t1 | AT2G28670 | 44.681 | 235 | 114 | 5 | 163 | 389 | 209 | 435 | 3.49e-48 | 169 |
| MS.gene97293.t1 | AT2G28670 | 44.206 | 233 | 114 | 5 | 165 | 389 | 1 | 225 | 7.62e-48 | 162 |
| MS.gene97293.t1 | AT3G24020 | 34.894 | 235 | 133 | 5 | 154 | 388 | 27 | 241 | 3.61e-35 | 130 |
| MS.gene97293.t1 | AT4G13580 | 35.146 | 239 | 127 | 6 | 154 | 388 | 28 | 242 | 8.26e-35 | 129 |
| MS.gene97293.t1 | AT2G21100 | 40.426 | 94 | 49 | 3 | 271 | 362 | 75 | 163 | 6.51e-12 | 64.3 |
| MS.gene97293.t1 | AT2G21100 | 40.426 | 94 | 49 | 3 | 271 | 362 | 75 | 163 | 6.51e-12 | 64.3 |
| MS.gene97293.t1 | AT3G13650 | 33.898 | 118 | 71 | 4 | 271 | 388 | 73 | 183 | 1.45e-11 | 63.5 |
Find 116 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGTTGTGGAAGTTCTTC+TGG | 0.253047 | 7.3:+78397128 | None:intergenic |
| GGCACAAGTAACACTGTTTC+TGG | 0.257411 | 7.3:-78396762 | MS.gene97293:CDS |
| GTGACAATGCCGTTGAGTTT+AGG | 0.257911 | 7.3:+78396852 | None:intergenic |
| AATGGAATTCCTCCAGTAAT+AGG | 0.258847 | 7.3:+78396882 | None:intergenic |
| TGACAATGCCGTTGAGTTTA+GGG | 0.260469 | 7.3:+78396853 | None:intergenic |
| GGAAGTGGCACTTCAGCTTC+TGG | 0.289945 | 7.3:+78397110 | None:intergenic |
| GTTTCGGCGGGTAATCTTCC+TGG | 0.290220 | 7.3:-78396720 | MS.gene97293:CDS |
| AACAATCTCTTCCCTATTAC+TGG | 0.302816 | 7.3:-78396894 | MS.gene97293:CDS |
| AATACTGCCACACCGATTTC+TGG | 0.303403 | 7.3:-78397242 | MS.gene97293:CDS |
| GCACTTGGCGAAGCGGTAAT+AGG | 0.311234 | 7.3:+78397293 | None:intergenic |
| GCTCATGTTCTTCCGTTAAC+TGG | 0.330883 | 7.3:+78396646 | None:intergenic |
| GCTGTAACCGGCGTTGCATT+AGG | 0.347214 | 7.3:+78397053 | None:intergenic |
| GAAGAGATTGTTATTAAGCT+TGG | 0.351880 | 7.3:+78396905 | None:intergenic |
| GGCACTTCAGCTTCTGGTTG+TGG | 0.365626 | 7.3:+78397116 | None:intergenic |
| ATCACTGCTATCTCAGATTC+TGG | 0.369049 | 7.3:+78396462 | None:intergenic |
| GCCATAGGCTTTGCTGTAAC+CGG | 0.371677 | 7.3:+78397041 | None:intergenic |
| GATGACACTATAAGTCTGTT+TGG | 0.375198 | 7.3:-78396504 | MS.gene97293:CDS |
| TTCTTCATGCATGATATCCT+TGG | 0.388666 | 7.3:-78396999 | MS.gene97293:CDS |
| TAAGTCTGTTTGGGATTCAT+AGG | 0.390535 | 7.3:-78396494 | MS.gene97293:CDS |
| TTGAGTTTAGGGTTAACTAA+TGG | 0.391976 | 7.3:+78396864 | None:intergenic |
| GGGAGTGGTACCTCAGCTTC+TGG | 0.399874 | 7.3:+78397083 | None:intergenic |
| ATGACACTATAAGTCTGTTT+GGG | 0.400912 | 7.3:-78396503 | MS.gene97293:CDS |
| ATCTAGGATTCTTGCAGAGT+TGG | 0.403022 | 7.3:+78397403 | None:intergenic |
| GCACTGAGACCTACAAGGTT+TGG | 0.410828 | 7.3:+78396816 | None:intergenic |
| GGCAGTATTGGTGGTGGTGG+TGG | 0.410999 | 7.3:+78397256 | None:intergenic |
| CACTGAGACCTACAAGGTTT+GGG | 0.416021 | 7.3:+78396817 | None:intergenic |
| CAGAACCAAACATAAGCTTC+TGG | 0.418523 | 7.3:+78396685 | None:intergenic |
| TACCTTCAGTAGGTTCTCTA+TGG | 0.422239 | 7.3:+78396398 | None:intergenic |
| AACAATCTCCCAAACCTTGT+AGG | 0.423141 | 7.3:-78396825 | MS.gene97293:CDS |
| ATGGAATTCCTCCAGTAATA+GGG | 0.425850 | 7.3:+78396883 | None:intergenic |
| TTCATGCATGATATCCTTGG+TGG | 0.426597 | 7.3:-78396996 | MS.gene97293:CDS |
| TCAGCTTCTGGTGGTGGAAG+TGG | 0.440204 | 7.3:+78397095 | None:intergenic |
| GAGCTGGATTCTTCAGTGAT+AGG | 0.443194 | 7.3:-78396627 | MS.gene97293:CDS |
| GGTACCTCAGCTTCTGGTGG+TGG | 0.445466 | 7.3:+78397089 | None:intergenic |
| TCTGGTGTTTCATCTGTGGT+AGG | 0.446439 | 7.3:+78397146 | None:intergenic |
| AAGTTGTGATTAGGAGGAAA+AGG | 0.462919 | 7.3:+78397435 | None:intergenic |
| ACAGTCCAGAAGCTTATGTT+TGG | 0.469595 | 7.3:-78396690 | MS.gene97293:CDS |
| GCCGAGGGAATGGCAGCTCC+AGG | 0.470305 | 7.3:+78397338 | None:intergenic |
| GTTGAGAGTCAAATTCATCT+AGG | 0.473605 | 7.3:+78397387 | None:intergenic |
| GACTCTCAACCACAAGCTAT+AGG | 0.480463 | 7.3:-78397374 | MS.gene97293:CDS |
| TAGCAGTGATTGGTGGGACT+GGG | 0.483880 | 7.3:-78396449 | MS.gene97293:CDS |
| AGAAATCGGTGTGGCAGTAT+TGG | 0.487007 | 7.3:+78397244 | None:intergenic |
| AGTGATTGATGACCAGTTAA+CGG | 0.488842 | 7.3:-78396658 | MS.gene97293:CDS |
| TTGGTATCTCCACCAGAAAT+CGG | 0.489324 | 7.3:+78397230 | None:intergenic |
| AACAGACTTATAGTGTCATC+AGG | 0.492488 | 7.3:+78396507 | None:intergenic |
| GGCGTTGCATTAGGAACAGC+CGG | 0.498749 | 7.3:+78397062 | None:intergenic |
| ACTGGAGGGATGTCCACAAC+TGG | 0.504552 | 7.3:+78397176 | None:intergenic |
| TATAGTTGTGGCCGAGGGAA+TGG | 0.507876 | 7.3:+78397328 | None:intergenic |
| AGATTACCCGCCGAAACAAA+AGG | 0.508321 | 7.3:+78396726 | None:intergenic |
| GTAGCAAACAGTGATGTAAC+CGG | 0.514157 | 7.3:-78396939 | MS.gene97293:CDS |
| CTGTGGTATAGTTGTGGCCG+AGG | 0.515271 | 7.3:+78397322 | None:intergenic |
| TGAGACTGAAGGGTCTGGAT+TGG | 0.518006 | 7.3:+78397211 | None:intergenic |
| TCTGTGGTAGGACTCACAAC+TGG | 0.518334 | 7.3:+78397158 | None:intergenic |
| TTGTTATTAAGCTTGGAGAA+TGG | 0.519150 | 7.3:+78396912 | None:intergenic |
| ACCTGGAGCTGCCATTCCCT+CGG | 0.520471 | 7.3:-78397339 | MS.gene97293:CDS |
| CGGCGGGTAATCTTCCTGGT+GGG | 0.526197 | 7.3:-78396716 | MS.gene97293:CDS |
| TTCTTCTGGTGTTTCATCTG+TGG | 0.526975 | 7.3:+78397142 | None:intergenic |
| GGAATGGCAGCTCCAGGTCC+TGG | 0.529908 | 7.3:+78397344 | None:intergenic |
| TGTGTTGGTCTACCTTCAGT+AGG | 0.533325 | 7.3:+78396388 | None:intergenic |
| CAGCCCCATCTGTGGTGTGT+TGG | 0.536523 | 7.3:+78396373 | None:intergenic |
| GCTGCAGGTGTTATCGCACT+TGG | 0.538443 | 7.3:+78397278 | None:intergenic |
| GAATCTGAGATAGCAGTGAT+TGG | 0.539843 | 7.3:-78396459 | MS.gene97293:CDS |
| ATAGCAGTGATTGGTGGGAC+TGG | 0.541882 | 7.3:-78396450 | MS.gene97293:CDS |
| CTGAGATAGCAGTGATTGGT+GGG | 0.543629 | 7.3:-78396455 | MS.gene97293:CDS |
| GCCGGTTACAGCAAAGCCTA+TGG | 0.547365 | 7.3:-78397042 | MS.gene97293:CDS |
| GCATTAGGAACAGCCGGGAG+TGG | 0.551996 | 7.3:+78397068 | None:intergenic |
| AACGACGGCTCTTTCGCCAT+AGG | 0.560076 | 7.3:+78397026 | None:intergenic |
| CCATCAGCAAGAGTGGTAGC+AGG | 0.569287 | 7.3:-78396966 | MS.gene97293:CDS |
| TGTGGCAGTATTGGTGGTGG+TGG | 0.569385 | 7.3:+78397253 | None:intergenic |
| CACGGGGCTGAGCATCATGA+TGG | 0.571570 | 7.3:-78396531 | MS.gene97293:CDS |
| CCTGCTACCACTCTTGCTGA+TGG | 0.572490 | 7.3:+78396966 | None:intergenic |
| TACTTGGCAAGCTCATTGGA+TGG | 0.573716 | 7.3:-78396588 | MS.gene97293:CDS |
| GAGCAGCACTGAGACCTACA+AGG | 0.573733 | 7.3:+78396811 | None:intergenic |
| TCGGCGGGTAATCTTCCTGG+TGG | 0.575082 | 7.3:-78396717 | MS.gene97293:CDS |
| TAGACCAACACACCACAGAT+GGG | 0.578508 | 7.3:-78396377 | MS.gene97293:CDS |
| AAGCTTGGAGAATGGTAAGC+CGG | 0.579168 | 7.3:+78396920 | None:intergenic |
| CGGTGTGGCAGTATTGGTGG+TGG | 0.581618 | 7.3:+78397250 | None:intergenic |
| GTAGACCAACACACCACAGA+TGG | 0.583033 | 7.3:-78396378 | MS.gene97293:CDS |
| AATCGGTGTGGCAGTATTGG+TGG | 0.585340 | 7.3:+78397247 | None:intergenic |
| AGAAAATGAAGCACCAGTTG+TGG | 0.586435 | 7.3:-78397189 | MS.gene97293:CDS |
| GGTAGATTGCCTATAGCTTG+TGG | 0.588861 | 7.3:+78397365 | None:intergenic |
| TCTGAGATAGCAGTGATTGG+TGG | 0.591085 | 7.3:-78396456 | MS.gene97293:CDS |
| TTCTGGACTGTAAACCCACC+AGG | 0.593913 | 7.3:+78396702 | None:intergenic |
| ATAGGCAATCTACCAGGACC+TGG | 0.594353 | 7.3:-78397356 | MS.gene97293:CDS |
| ACTTATCTGTGGTATAGTTG+TGG | 0.596688 | 7.3:+78397316 | None:intergenic |
| TACCCGCCGAAACAAAAGGT+TGG | 0.602825 | 7.3:+78396730 | None:intergenic |
| ATCACATCCATCAGCAAGAG+TGG | 0.602915 | 7.3:-78396973 | MS.gene97293:CDS |
| CAAGCTATAGGCAATCTACC+AGG | 0.605391 | 7.3:-78397362 | MS.gene97293:CDS |
| GATGGCGTCAGCCCCATCTG+TGG | 0.606074 | 7.3:+78396365 | None:intergenic |
| GGCTGTTCCTAATGCAACGC+CGG | 0.610188 | 7.3:-78397060 | MS.gene97293:CDS |
| GTTAACGGAAGAACATGAGC+TGG | 0.611367 | 7.3:-78396643 | MS.gene97293:CDS |
| TGTGGTATAGTTGTGGCCGA+GGG | 0.612073 | 7.3:+78397323 | None:intergenic |
| AGAAGCTGAGGTACCACTCC+CGG | 0.614081 | 7.3:-78397081 | MS.gene97293:CDS |
| ACTTCCACCACCAGAAGCTG+AGG | 0.629910 | 7.3:-78397093 | MS.gene97293:CDS |
| AGTGGTACCTCAGCTTCTGG+TGG | 0.630846 | 7.3:+78397086 | None:intergenic |
| TCATGCACAATCCTAACACA+TGG | 0.631557 | 7.3:-78397472 | MS.gene97293:CDS |
| TGTTATCGCACTTGGCGAAG+CGG | 0.635626 | 7.3:+78397286 | None:intergenic |
| TCAGTGATAGGAAGAGCACA+AGG | 0.636346 | 7.3:-78396615 | MS.gene97293:CDS |
| GGGAAGTATGAGAATGCTAG+AGG | 0.638312 | 7.3:-78396429 | MS.gene97293:CDS |
| TGGTAGGACTCACAACTGGA+GGG | 0.642055 | 7.3:+78397162 | None:intergenic |
| TTAGTTAACCCTAAACTCAA+CGG | 0.648399 | 7.3:-78396861 | MS.gene97293:CDS |
| ACTGCCACACCGATTTCTGG+TGG | 0.648987 | 7.3:-78397239 | MS.gene97293:CDS |
| AGGATTGTGCATGAAAACAT+TGG | 0.649060 | 7.3:+78397481 | None:intergenic |
| TGCCATAGAGAACCTACTGA+AGG | 0.654395 | 7.3:-78396400 | MS.gene97293:CDS |
| GTAGATACTGAAATGCAAGA+TGG | 0.655812 | 7.3:+78396347 | None:intergenic |
| GTGGTAGGACTCACAACTGG+AGG | 0.657302 | 7.3:+78397161 | None:intergenic |
| AATCTCTTCCCTATTACTGG+AGG | 0.659877 | 7.3:-78396891 | MS.gene97293:CDS |
| GCGTTGCATTAGGAACAGCC+GGG | 0.662946 | 7.3:+78397063 | None:intergenic |
| AGACCAACACACCACAGATG+GGG | 0.667608 | 7.3:-78396376 | MS.gene97293:CDS |
| ACAAGTAACACTGTTTCTGG+CGG | 0.689812 | 7.3:-78396759 | MS.gene97293:CDS |
| GCGGTAATAGGACTTATCTG+TGG | 0.711972 | 7.3:+78397305 | None:intergenic |
| CAGTGATAGGAAGAGCACAA+GGG | 0.714001 | 7.3:-78396614 | MS.gene97293:CDS |
| ATCTCCACCAGAAATCGGTG+TGG | 0.717515 | 7.3:+78397235 | None:intergenic |
| CTGATGGATGTGATCCACCA+AGG | 0.726786 | 7.3:+78396982 | None:intergenic |
| ACATTAGTCACTACTCAGTG+AGG | 0.730761 | 7.3:+78396325 | None:intergenic |
| TGCATGAAGAAAGAAAACGA+CGG | 0.769494 | 7.3:+78397011 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CAATCAAAAAAGTTGTGATT+AGG | + | chr7.3:78396397-78396416 | None:intergenic | 25.0% |
| ATGACACTATAAGTCTGTTT+GGG | - | chr7.3:78397317-78397336 | MS.gene97293:CDS | 30.0% | |
| CACAAAAACAGTAATCACAA+TGG | + | chr7.3:78397269-78397288 | None:intergenic | 30.0% | |
| TCAAAAAAGTTGTGATTAGG+AGG | + | chr7.3:78396394-78396413 | None:intergenic | 30.0% | |
| TTAGTTAACCCTAAACTCAA+CGG | - | chr7.3:78396959-78396978 | MS.gene97293:CDS | 30.0% | |
| ! | GAAGAGATTGTTATTAAGCT+TGG | + | chr7.3:78396918-78396937 | None:intergenic | 30.0% |
| ! | TTGAGTTTAGGGTTAACTAA+TGG | + | chr7.3:78396959-78396978 | None:intergenic | 30.0% |
| ! | TTGTTATTAAGCTTGGAGAA+TGG | + | chr7.3:78396911-78396930 | None:intergenic | 30.0% |
| AACAATCTCTTCCCTATTAC+TGG | - | chr7.3:78396926-78396945 | MS.gene97293:CDS | 35.0% | |
| AACAGACTTATAGTGTCATC+AGG | + | chr7.3:78397316-78397335 | None:intergenic | 35.0% | |
| AAGTTGTGATTAGGAGGAAA+AGG | + | chr7.3:78396388-78396407 | None:intergenic | 35.0% | |
| AATGGAATTCCTCCAGTAAT+AGG | + | chr7.3:78396941-78396960 | None:intergenic | 35.0% | |
| ACTTATCTGTGGTATAGTTG+TGG | + | chr7.3:78396507-78396526 | None:intergenic | 35.0% | |
| AGGATTGTGCATGAAAACAT+TGG | + | chr7.3:78396342-78396361 | None:intergenic | 35.0% | |
| ATGGAATTCCTCCAGTAATA+GGG | + | chr7.3:78396940-78396959 | None:intergenic | 35.0% | |
| GATGACACTATAAGTCTGTT+TGG | - | chr7.3:78397316-78397335 | MS.gene97293:CDS | 35.0% | |
| GTAGATACTGAAATGCAAGA+TGG | + | chr7.3:78397476-78397495 | None:intergenic | 35.0% | |
| GTTGAGAGTCAAATTCATCT+AGG | + | chr7.3:78396436-78396455 | None:intergenic | 35.0% | |
| TCGACTGTATTCAAAAACAG+TGG | - | chr7.3:78397037-78397056 | MS.gene97293:CDS | 35.0% | |
| TGCATGAAGAAAGAAAACGA+CGG | + | chr7.3:78396812-78396831 | None:intergenic | 35.0% | |
| TTCTTCATGCATGATATCCT+TGG | - | chr7.3:78396821-78396840 | MS.gene97293:CDS | 35.0% | |
| ! | AGTGATTGATGACCAGTTAA+CGG | - | chr7.3:78397162-78397181 | MS.gene97293:CDS | 35.0% |
| ! | AGTGTAGTTTTCCATGTGTT+AGG | + | chr7.3:78396362-78396381 | None:intergenic | 35.0% |
| ! | TAAGTCTGTTTGGGATTCAT+AGG | - | chr7.3:78397326-78397345 | MS.gene97293:CDS | 35.0% |
| !!! | ACTGTTTTTGAATACAGTCG+AGG | + | chr7.3:78397038-78397057 | None:intergenic | 35.0% |
| !!! | CTTCATTTTCTGAGACTGAA+GGG | + | chr7.3:78396622-78396641 | None:intergenic | 35.0% |
| !!! | GTGATTACTGTTTTTGTGCA+CGG | - | chr7.3:78397271-78397290 | MS.gene97293:CDS | 35.0% |
| !!! | TGATTACTGTTTTTGTGCAC+GGG | - | chr7.3:78397272-78397291 | MS.gene97293:CDS | 35.0% |
| AACAATCTCCCAAACCTTGT+AGG | - | chr7.3:78396995-78397014 | MS.gene97293:CDS | 40.0% | |
| AATCTCTTCCCTATTACTGG+AGG | - | chr7.3:78396929-78396948 | MS.gene97293:CDS | 40.0% | |
| ACAGTCCAGAAGCTTATGTT+TGG | - | chr7.3:78397130-78397149 | MS.gene97293:CDS | 40.0% | |
| ATCACTGCTATCTCAGATTC+TGG | + | chr7.3:78397361-78397380 | None:intergenic | 40.0% | |
| CAGAACCAAACATAAGCTTC+TGG | + | chr7.3:78397138-78397157 | None:intergenic | 40.0% | |
| GTAGCAAACAGTGATGTAAC+CGG | - | chr7.3:78396881-78396900 | MS.gene97293:CDS | 40.0% | |
| TACCTTCAGTAGGTTCTCTA+TGG | + | chr7.3:78397425-78397444 | None:intergenic | 40.0% | |
| TCATGCACAATCCTAACACA+TGG | - | chr7.3:78396348-78396367 | MS.gene97293:CDS | 40.0% | |
| TGACAATGCCGTTGAGTTTA+GGG | + | chr7.3:78396970-78396989 | None:intergenic | 40.0% | |
| TTCATGCATGATATCCTTGG+TGG | - | chr7.3:78396824-78396843 | MS.gene97293:CDS | 40.0% | |
| TTCTTCTGGTGTTTCATCTG+TGG | + | chr7.3:78396681-78396700 | None:intergenic | 40.0% | |
| TTGGTATCTCCACCAGAAAT+CGG | + | chr7.3:78396593-78396612 | None:intergenic | 40.0% | |
| ! | AGAAAATGAAGCACCAGTTG+TGG | - | chr7.3:78396631-78396650 | MS.gene97293:CDS | 40.0% |
| ! | ATCTAGGATTCTTGCAGAGT+TGG | + | chr7.3:78396420-78396439 | None:intergenic | 40.0% |
| ! | GAATCTGAGATAGCAGTGAT+TGG | - | chr7.3:78397361-78397380 | MS.gene97293:CDS | 40.0% |
| ! | GTTTTACTTGGCAAGCTCAT+TGG | - | chr7.3:78397228-78397247 | MS.gene97293:CDS | 40.0% |
| !! | AAGAGCACAAGGGTTTTACT+TGG | - | chr7.3:78397216-78397235 | MS.gene97293:CDS | 40.0% |
| !! | ACAAGTAACACTGTTTCTGG+CGG | - | chr7.3:78397061-78397080 | MS.gene97293:CDS | 40.0% |
| !! | CGACAACCAACCTTTTGTTT+CGG | - | chr7.3:78397084-78397103 | MS.gene97293:CDS | 40.0% |
| !!! | GATTACTGTTTTTGTGCACG+GGG | - | chr7.3:78397273-78397292 | MS.gene97293:CDS | 40.0% |
| !!! | GCTTCATTTTCTGAGACTGA+AGG | + | chr7.3:78396623-78396642 | None:intergenic | 40.0% |
| AAGCTTGGAGAATGGTAAGC+CGG | + | chr7.3:78396903-78396922 | None:intergenic | 45.0% | |
| AGAAATCGGTGTGGCAGTAT+TGG | + | chr7.3:78396579-78396598 | None:intergenic | 45.0% | |
| AGATTACCCGCCGAAACAAA+AGG | + | chr7.3:78397097-78397116 | None:intergenic | 45.0% | |
| ATCACATCCATCAGCAAGAG+TGG | - | chr7.3:78396847-78396866 | MS.gene97293:CDS | 45.0% | |
| CAAGCTATAGGCAATCTACC+AGG | - | chr7.3:78396458-78396477 | MS.gene97293:CDS | 45.0% | |
| CACTGAGACCTACAAGGTTT+GGG | + | chr7.3:78397006-78397025 | None:intergenic | 45.0% | |
| CTGAGATAGCAGTGATTGGT+GGG | - | chr7.3:78397365-78397384 | MS.gene97293:CDS | 45.0% | |
| GACTCTCAACCACAAGCTAT+AGG | - | chr7.3:78396446-78396465 | MS.gene97293:CDS | 45.0% | |
| GAGCTGGATTCTTCAGTGAT+AGG | - | chr7.3:78397193-78397212 | MS.gene97293:CDS | 45.0% | |
| GCGGTAATAGGACTTATCTG+TGG | + | chr7.3:78396518-78396537 | None:intergenic | 45.0% | |
| GCTCATGTTCTTCCGTTAAC+TGG | + | chr7.3:78397177-78397196 | None:intergenic | 45.0% | |
| GGCACAAGTAACACTGTTTC+TGG | - | chr7.3:78397058-78397077 | MS.gene97293:CDS | 45.0% | |
| GGTAGATTGCCTATAGCTTG+TGG | + | chr7.3:78396458-78396477 | None:intergenic | 45.0% | |
| GTGACAATGCCGTTGAGTTT+AGG | + | chr7.3:78396971-78396990 | None:intergenic | 45.0% | |
| GTTAACGGAAGAACATGAGC+TGG | - | chr7.3:78397177-78397196 | MS.gene97293:CDS | 45.0% | |
| TACTTGGCAAGCTCATTGGA+TGG | - | chr7.3:78397232-78397251 | MS.gene97293:CDS | 45.0% | |
| TAGACCAACACACCACAGAT+GGG | - | chr7.3:78397443-78397462 | MS.gene97293:CDS | 45.0% | |
| TCTGGTGTTTCATCTGTGGT+AGG | + | chr7.3:78396677-78396696 | None:intergenic | 45.0% | |
| TCTGGTTGTGGAAGTTCTTC+TGG | + | chr7.3:78396695-78396714 | None:intergenic | 45.0% | |
| TGCCATAGAGAACCTACTGA+AGG | - | chr7.3:78397420-78397439 | MS.gene97293:CDS | 45.0% | |
| ! | CAGTGATAGGAAGAGCACAA+GGG | - | chr7.3:78397206-78397225 | MS.gene97293:CDS | 45.0% |
| ! | GGGAAGTATGAGAATGCTAG+AGG | - | chr7.3:78397391-78397410 | MS.gene97293:CDS | 45.0% |
| ! | TCAGTGATAGGAAGAGCACA+AGG | - | chr7.3:78397205-78397224 | MS.gene97293:CDS | 45.0% |
| ! | TCTGAGATAGCAGTGATTGG+TGG | - | chr7.3:78397364-78397383 | MS.gene97293:CDS | 45.0% |
| ! | TGTGTTGGTCTACCTTCAGT+AGG | + | chr7.3:78397435-78397454 | None:intergenic | 45.0% |
| !! | AACCAACCTTTTGTTTCGGC+GGG | - | chr7.3:78397088-78397107 | MS.gene97293:CDS | 45.0% |
| !! | AATACTGCCACACCGATTTC+TGG | - | chr7.3:78396578-78396597 | MS.gene97293:CDS | 45.0% |
| !! | CAACCAACCTTTTGTTTCGG+CGG | - | chr7.3:78397087-78397106 | MS.gene97293:CDS | 45.0% |
| !!! | TTTTCTGAGACTGAAGGGTC+TGG | + | chr7.3:78396617-78396636 | None:intergenic | 45.0% |
| AGACCAACACACCACAGATG+GGG | - | chr7.3:78397444-78397463 | MS.gene97293:CDS | 50.0% | |
| ATAGCAGTGATTGGTGGGAC+TGG | - | chr7.3:78397370-78397389 | MS.gene97293:CDS | 50.0% | |
| ATAGGCAATCTACCAGGACC+TGG | - | chr7.3:78396464-78396483 | MS.gene97293:CDS | 50.0% | |
| ATCTCCACCAGAAATCGGTG+TGG | + | chr7.3:78396588-78396607 | None:intergenic | 50.0% | |
| GCACTGAGACCTACAAGGTT+TGG | + | chr7.3:78397007-78397026 | None:intergenic | 50.0% | |
| GTAGACCAACACACCACAGA+TGG | - | chr7.3:78397442-78397461 | MS.gene97293:CDS | 50.0% | |
| TACCCGCCGAAACAAAAGGT+TGG | + | chr7.3:78397093-78397112 | None:intergenic | 50.0% | |
| TAGCAGTGATTGGTGGGACT+GGG | - | chr7.3:78397371-78397390 | MS.gene97293:CDS | 50.0% | |
| TATAGTTGTGGCCGAGGGAA+TGG | + | chr7.3:78396495-78396514 | None:intergenic | 50.0% | |
| TCTGTGGTAGGACTCACAAC+TGG | + | chr7.3:78396665-78396684 | None:intergenic | 50.0% | |
| TGAGACTGAAGGGTCTGGAT+TGG | + | chr7.3:78396612-78396631 | None:intergenic | 50.0% | |
| TGGTAGGACTCACAACTGGA+GGG | + | chr7.3:78396661-78396680 | None:intergenic | 50.0% | |
| TGTGGTATAGTTGTGGCCGA+GGG | + | chr7.3:78396500-78396519 | None:intergenic | 50.0% | |
| TGTTATCGCACTTGGCGAAG+CGG | + | chr7.3:78396537-78396556 | None:intergenic | 50.0% | |
| TTCTGGACTGTAAACCCACC+AGG | + | chr7.3:78397121-78397140 | None:intergenic | 50.0% | |
| ! | AATCGGTGTGGCAGTATTGG+TGG | + | chr7.3:78396576-78396595 | None:intergenic | 50.0% |
| ! | CTGATGGATGTGATCCACCA+AGG | + | chr7.3:78396841-78396860 | None:intergenic | 50.0% |
| ! | GCCATAGGCTTTGCTGTAAC+CGG | + | chr7.3:78396782-78396801 | None:intergenic | 50.0% |
| AACGACGGCTCTTTCGCCAT+AGG | + | chr7.3:78396797-78396816 | None:intergenic | 55.0% | |
| ACTGGAGGGATGTCCACAAC+TGG | + | chr7.3:78396647-78396666 | None:intergenic | 55.0% | |
| ACTTCCACCACCAGAAGCTG+AGG | - | chr7.3:78396727-78396746 | MS.gene97293:CDS | 55.0% | |
| AGTGGTACCTCAGCTTCTGG+TGG | + | chr7.3:78396737-78396756 | None:intergenic | 55.0% | |
| CCATCAGCAAGAGTGGTAGC+AGG | - | chr7.3:78396854-78396873 | MS.gene97293:CDS | 55.0% | |
| CCTGCTACCACTCTTGCTGA+TGG | + | chr7.3:78396857-78396876 | None:intergenic | 55.0% | |
| CTGTGGTATAGTTGTGGCCG+AGG | + | chr7.3:78396501-78396520 | None:intergenic | 55.0% | |
| GCACTTGGCGAAGCGGTAAT+AGG | + | chr7.3:78396530-78396549 | None:intergenic | 55.0% | |
| GCCGGTTACAGCAAAGCCTA+TGG | - | chr7.3:78396778-78396797 | MS.gene97293:CDS | 55.0% | |
| GCGTTGCATTAGGAACAGCC+GGG | + | chr7.3:78396760-78396779 | None:intergenic | 55.0% | |
| GCTGTAACCGGCGTTGCATT+AGG | + | chr7.3:78396770-78396789 | None:intergenic | 55.0% | |
| GGAAGTGGCACTTCAGCTTC+TGG | + | chr7.3:78396713-78396732 | None:intergenic | 55.0% | |
| GGCGTTGCATTAGGAACAGC+CGG | + | chr7.3:78396761-78396780 | None:intergenic | 55.0% | |
| GGCTGTTCCTAATGCAACGC+CGG | - | chr7.3:78396760-78396779 | MS.gene97293:CDS | 55.0% | |
| GTGGTAGGACTCACAACTGG+AGG | + | chr7.3:78396662-78396681 | None:intergenic | 55.0% | |
| GTTTCGGCGGGTAATCTTCC+TGG | - | chr7.3:78397100-78397119 | MS.gene97293:CDS | 55.0% | |
| ! | AGAAGCTGAGGTACCACTCC+CGG | - | chr7.3:78396739-78396758 | MS.gene97293:CDS | 55.0% |
| ! | GAGCAGCACTGAGACCTACA+AGG | + | chr7.3:78397012-78397031 | None:intergenic | 55.0% |
| ! | GCTGCAGGTGTTATCGCACT+TGG | + | chr7.3:78396545-78396564 | None:intergenic | 55.0% |
| ! | GGCACTTCAGCTTCTGGTTG+TGG | + | chr7.3:78396707-78396726 | None:intergenic | 55.0% |
| !! | ACTGCCACACCGATTTCTGG+TGG | - | chr7.3:78396581-78396600 | MS.gene97293:CDS | 55.0% |
| !! | TCAGCTTCTGGTGGTGGAAG+TGG | + | chr7.3:78396728-78396747 | None:intergenic | 55.0% |
| !! | TGTGGCAGTATTGGTGGTGG+TGG | + | chr7.3:78396570-78396589 | None:intergenic | 55.0% |
| ACCTGGAGCTGCCATTCCCT+CGG | - | chr7.3:78396481-78396500 | MS.gene97293:CDS | 60.0% | |
| CACGGGGCTGAGCATCATGA+TGG | - | chr7.3:78397289-78397308 | MS.gene97293:CDS | 60.0% | |
| CAGCCCCATCTGTGGTGTGT+TGG | + | chr7.3:78397450-78397469 | None:intergenic | 60.0% | |
| CGGCGGGTAATCTTCCTGGT+GGG | - | chr7.3:78397104-78397123 | MS.gene97293:CDS | 60.0% | |
| GCATTAGGAACAGCCGGGAG+TGG | + | chr7.3:78396755-78396774 | None:intergenic | 60.0% | |
| GGGAGTGGTACCTCAGCTTC+TGG | + | chr7.3:78396740-78396759 | None:intergenic | 60.0% | |
| GGTACCTCAGCTTCTGGTGG+TGG | + | chr7.3:78396734-78396753 | None:intergenic | 60.0% | |
| TCGGCGGGTAATCTTCCTGG+TGG | - | chr7.3:78397103-78397122 | MS.gene97293:CDS | 60.0% | |
| !! | CGGTGTGGCAGTATTGGTGG+TGG | + | chr7.3:78396573-78396592 | None:intergenic | 60.0% |
| !! | GGCAGTATTGGTGGTGGTGG+TGG | + | chr7.3:78396567-78396586 | None:intergenic | 60.0% |
| GATGGCGTCAGCCCCATCTG+TGG | + | chr7.3:78397458-78397477 | None:intergenic | 65.0% | |
| GGAATGGCAGCTCCAGGTCC+TGG | + | chr7.3:78396479-78396498 | None:intergenic | 65.0% | |
| !! | TTGGTGGTGGTGGTGGCTGC+AGG | + | chr7.3:78396560-78396579 | None:intergenic | 65.0% |
| GCCGAGGGAATGGCAGCTCC+AGG | + | chr7.3:78396485-78396504 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 78396335 | 78397507 | 78396335 | ID=MS.gene97293 |
| chr7.3 | mRNA | 78396335 | 78397507 | 78396335 | ID=MS.gene97293.t1;Parent=MS.gene97293 |
| chr7.3 | exon | 78396335 | 78397507 | 78396335 | ID=MS.gene97293.t1.exon1;Parent=MS.gene97293.t1 |
| chr7.3 | CDS | 78396335 | 78397507 | 78396335 | ID=cds.MS.gene97293.t1;Parent=MS.gene97293.t1 |
| Gene Sequence |
| Protein sequence |
