AlfalfaGEDB | MS.gene97880

M. sativa cultivar XinJiangDaYe / MS.gene97880

KEGG: K15402
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97880.t1	XP_013466880.1	91.2	536	40	2	1	531	20	553	7.50E-285	989.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97880.t1	Q9FMY1	65.5	534	174	4	2	529	19	548	3.0e-205	716.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97880.t1	A0A072VH53	91.2	536	40	2	1	531	20	553	5.4e-285	989.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene008145	MS.gene97880	PPI
MS.gene052501	MS.gene97880	PPI
MS.gene052820	MS.gene97880	PPI
MS.gene052823	MS.gene97880	PPI
MS.gene052825	MS.gene97880	PPI
MS.gene33766	MS.gene97880	PPI
MS.gene39429	MS.gene97880	PPI
MS.gene39430	MS.gene97880	PPI
MS.gene63500	MS.gene97880	PPI
MS.gene97880	MS.gene052506	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97880.t1	MTR_1g037560	91.231	536	40	2	1	531	20	553	0.0	992
MS.gene97880.t1	MTR_1g037550	81.481	540	89	3	1	531	20	557	0.0	886
MS.gene97880.t1	MTR_4g075110	73.420	538	132	4	1	530	24	558	0.0	820
MS.gene97880.t1	MTR_7g406990	89.070	430	34	5	1	418	1	429	0.0	742
MS.gene97880.t1	MTR_8g030590	47.573	515	242	9	21	521	10	510	3.60e-156	456
MS.gene97880.t1	MTR_8g098435	45.614	513	250	9	21	521	10	505	1.07e-148	436
MS.gene97880.t1	MTR_5g070010	45.585	487	238	7	50	521	34	508	2.44e-142	420
MS.gene97880.t1	MTR_7g033570	41.235	502	281	7	21	521	6	494	3.04e-139	412
MS.gene97880.t1	MTR_8g088470	40.763	498	284	5	24	521	5	491	2.87e-138	409
MS.gene97880.t1	MTR_3g463060	44.398	482	238	9	51	521	40	502	3.42e-136	404

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97880.t1	AT5G23190	66.288	528	168	4	8	529	25	548	0.0	738
MS.gene97880.t1	AT5G08250	65.485	536	168	6	3	529	21	548	0.0	733
MS.gene97880.t1	AT5G08250	67.683	492	144	5	47	529	1	486	0.0	701
MS.gene97880.t1	AT1G24540	46.463	523	267	7	7	521	3	520	8.79e-170	491
MS.gene97880.t1	AT3G26125	45.122	492	252	5	49	525	48	536	1.67e-158	462
MS.gene97880.t1	AT1G13140	42.430	535	282	10	5	527	11	531	3.53e-155	454
MS.gene97880.t1	AT1G63710	45.349	516	253	9	19	521	8	507	1.20e-151	444
MS.gene97880.t1	AT1G01600	46.356	494	248	7	50	530	33	522	9.15e-151	443
MS.gene97880.t1	AT2G45970	45.030	493	255	5	50	531	33	520	5.26e-149	438
MS.gene97880.t1	AT1G13140	41.620	531	266	10	5	527	11	505	6.83e-148	434

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Find 80 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATAGCTTAGGAACAAT+AGG	0.324329	7.2:-91749454	None:intergenic
AAATATTACAAGAAATTTGC+AGG	0.364092	7.2:+91748273	MS.gene97880:CDS
AAATGTGGTTGTAAACAACC+AGG	0.655749	7.2:-91747858	None:intergenic
AACTGTGTTTATGAGGCTTA+AGG	0.438003	7.2:+91748112	MS.gene97880:CDS
AAGAAATTCATAAATATTTG+AGG	0.416951	7.2:+91749530	MS.gene97880:CDS
AAGATAGCTTAGGAACAATA+GGG	0.551444	7.2:-91749453	None:intergenic
AAGGGAATTTCAGGCAAATG+TGG	0.568478	7.2:-91747873	None:intergenic
AAGTTCACTATTTACCCTAA+AGG	0.504648	7.2:+91747561	MS.gene97880:CDS
AATATTACAAGAAATTTGCA+GGG	0.594384	7.2:+91748274	MS.gene97880:CDS
AATGGAATAAAACTAAAGAA+AGG	0.510671	7.2:+91749181	MS.gene97880:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATAGCTTAGGAACAAT+AGG	-	chr7.2:91749457-91749476	None:intergenic	30.0%
AAGATAGCTTAGGAACAATA+GGG	-	chr7.2:91749456-91749475	None:intergenic	30.0%
AAGTTCACTATTTACCCTAA+AGG	+	chr7.2:91747561-91747580	MS.gene97880:CDS	30.0%
AATTTATTCCATGGGAAGAA+TGG	+	chr7.2:91749222-91749241	MS.gene97880:CDS	30.0%
ACGAACGAATATGAAAACAA+TGG	-	chr7.2:91747319-91747338	None:intergenic	30.0%
ATTCCAAAAATAGGCCAATT+GGG	-	chr7.2:91747378-91747397	None:intergenic	30.0%
CATATTTCGTTACCATGTTA+AGG	+	chr7.2:91749417-91749436	MS.gene97880:CDS	30.0%
GAAAGATGGTTAACTAAAGA+TGG	+	chr7.2:91749283-91749302	MS.gene97880:CDS	30.0%
GACATAGTTTCTGAATTACT+CGG	+	chr7.2:91747597-91747616	MS.gene97880:CDS	30.0%
GGAAGAATGGAAAATATATG+GGG	+	chr7.2:91749235-91749254	MS.gene97880:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	91747234	91749555	91747234	ID=MS.gene97880
chr7.2	mRNA	91747234	91749555	91747234	ID=MS.gene97880.t1;Parent=MS.gene97880
chr7.2	exon	91747234	91748430	91747234	ID=MS.gene97880.t1.exon1;Parent=MS.gene97880.t1
chr7.2	CDS	91747234	91748430	91747234	ID=cds.MS.gene97880.t1;Parent=MS.gene97880.t1
chr7.2	exon	91749157	91749555	91749157	ID=MS.gene97880.t1.exon2;Parent=MS.gene97880.t1
chr7.2	CDS	91749157	91749555	91749157	ID=cds.MS.gene97880.t1;Parent=MS.gene97880.t1

Gene Sequence

>MS.gene97880

ATGGCTGCAGCCACAGAAATCTTGTTTTCTCACATCATCTTGGTCTTGAAAAATATTCAAATCACTGAGATTATTATTGCAGCCATTGTTTTCATATTCGTTCGTTCTTTAAGATCGAAAAAACATCATGGTCATTGCCTACCCAATTGGCCTATTTTTGGAATGCTGCCTTATTTAATCAAAGGACTCAAAACAAACTTGTATGAATGGATCACTGACATTCTTAACCATCACAGTGGAACATCTAGATTCAGAGGGGCATGGTTCACTAGCCTCAACTATGTTATAACCTCAGAACCTCAAAATTTAGAACATGTTCTCAAAACAAAGTTCACTATTTACCCTAAAGGAAACTATTTCAGAGACATAGTTTCTGAATTACTCGGAGATGGTATTTTCGCTGCTGACAATGAAACATGGCAGAAACAAAGGAAAATAGCAAGTATCGAGTTTCATTCGACAAATTTTAGAAAATTAACAATTGAGTCAATTTTCAAGCTTGTGAACGATAGGCTCATACCAGTCTTAGAATTATCATTGAAGAAAAATGTTGCCGTAGATCTTCAAGATATTTTGCTGAGACTAACTTTTGATAATGTTTGTATGATAGCTTTTGGTGTTGATCCTGGTTGTTTACAACCACATTTGCCTGAAATTCCCTTTGCAGCAGCTTTTGAGGATGCAACAGAAGCTATTTTGTTTCGATTTGTCGTGCCGATTTGTGTATGGAAGGCTATGAGGTTTCTTAACTTAGGTATGGAAAGAAAGCTTAAGAAATCAATACAAAAAGTTGATGAATTTGCTGAGAATGTTATAAGGGCAAGAAAGAAAGAACTTTCTTTGCAAAATGAAGACGATAAGGAAAAATCGGATTTGTTAACTGTGTTTATGAGGCTTAAGGATGAGAATGGAAAGTCTTATTCAGATAAGTTTTTGAGGGATATTTGTGTAAATTTTATATTAGCTGGGAGAGACACTTCTTCAGTTGCTTTGAGCTGGTTTTTCTGGTTGGTTGATCAGAATCATCAAGTTGAGGAGAAAATATTACAAGAAATTTGCAGGGTGGTGAGTCAGAGGGAAGATTTTGATGATTGTTTGAGATTTAGGTCAGAGGAGATTAAGAAGATGGATTATTTGCATGCTGCTCTTTCAGAAGCTCTTAGATTGTACCCTTCTGTGCCTGTGGATCATAAGGAGGTAATATTGCATTCATTGACATTCCTCATGTATTTTGTATTATTGATTTTGATTTACCAAGTGATTAGCTGCTGTCGCACAAGTGATTGAGGCAGAGTAAACAATCATTTTGATTCTTAAACGTGTGAGGCGGAGTCACAATAGTTACTGAATGTACCAAAATTATAAAAAAAACACGTCTAAATATGACTTGCGTTAGTCAGTTTAGTTCTCAAATGAGTCTTTCATTTGTTAGTCCGGACACTTTTTCTAGAAATCATAGGGTTAAGACCTAAAAGTATTCATCTTAATCATAATTTCATTTGATAAAGTGAAACTTAAGCTTTAGATTAGCATGCTTCCTCCCCGTGAAAACTAGAAGCATAAGACAAAATAAAAGAATCTTGTTAACGAGTTCTCAAAGGCACTCTTTTTACATTAAGATATTTTTTTTTTAAAAGTCAAATAATTATTTTCAATGCATTAATTGGATACATAAATTATTATAAAAATTTACTATTTAAGGTTCTTAAAGAGTGTCACAAAGGCACTCATTAGCATTTTTCAAAAATGAAATAGATTGGAAAAGAGAAATTCATTCTCTTTTAAGTATTCTAAAATGATAAATAATTTGAGACAAGACAATATTATAAGAAGAACACTTAATATGATCAAATAGAGAAAGAATAGTTGAATTCACTATCAATTGTTGATTGAACTTCAAAATGCATTATGATTTTTCTTTAGGTGGTGGAAGATGACATATTCCCAAATGGAATAAAACTAAAGAAAGGGACAAAAGTGATATATGCAATTTATTCCATGGGAAGAATGGAAAATATATGGGGAAAAGATTGCTTGGAGTTCAAGCCAGAAAGATGGTTAACTAAAGATGGTCATTTCATGAGCGAATCTGCCTACAAATTTACTGCTTTTAATGGAGGACCAAGGTTGTGTTTAGGCAAAGATTTTGCATACTATCAAATGAAATATGTTGCAGCTAGCATCATATTTCGTTACCATGTTAAGGTTGTTGAGAATCACCCTATTGTTCCTAAGCTATCTTTGACACTTTACATGAAGCATGGATTAAAAGTTAACCTTTATAGACGTTGTGATGAAGAAATTCATAAATATTTGAGGTAA

Protein sequence

>MS.gene97880.t1

MAAATEILFSHIILVLKNIQITEIIIAAIVFIFVRSLRSKKHHGHCLPNWPIFGMLPYLIKGLKTNLYEWITDILNHHSGTSRFRGAWFTSLNYVITSEPQNLEHVLKTKFTIYPKGNYFRDIVSELLGDGIFAADNETWQKQRKIASIEFHSTNFRKLTIESIFKLVNDRLIPVLELSLKKNVAVDLQDILLRLTFDNVCMIAFGVDPGCLQPHLPEIPFAAAFEDATEAILFRFVVPICVWKAMRFLNLGMERKLKKSIQKVDEFAENVIRARKKELSLQNEDDKEKSDLLTVFMRLKDENGKSYSDKFLRDICVNFILAGRDTSSVALSWFFWLVDQNHQVEEKILQEICRVVSQREDFDDCLRFRSEEIKKMDYLHAALSEALRLYPSVPVDHKEVVEDDIFPNGIKLKKGTKVIYAIYSMGRMENIWGKDCLEFKPERWLTKDGHFMSESAYKFTAFNGGPRLCLGKDFAYYQMKYVAASIIFRYHVKVVENHPIVPKLSLTLYMKHGLKVNLYRRCDEEIHKYLR