Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98041.t1 | XP_024638993.1 | 90.9 | 274 | 25 | 0 | 1 | 274 | 1 | 274 | 2.50E-98 | 368.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98041.t1 | P55871 | 89.5 | 172 | 17 | 1 | 103 | 273 | 99 | 270 | 4.4e-88 | 325.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98041.t1 | G7K0U8 | 90.9 | 274 | 25 | 0 | 1 | 274 | 49 | 322 | 1.8e-98 | 368.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene98041 | MS.gene061898 | PPI |
| MS.gene98041 | MS.gene64519 | PPI |
| MS.gene98041 | MS.gene060216 | PPI |
| MS.gene52139 | MS.gene98041 | PPI |
| MS.gene98041 | MS.gene22877 | PPI |
| MS.gene98041 | MS.gene63721 | PPI |
| MS.gene018560 | MS.gene98041 | PPI |
| MS.gene98041 | MS.gene058030 | PPI |
| MS.gene09852 | MS.gene98041 | PPI |
| MS.gene98041 | MS.gene024538 | PPI |
| MS.gene98041 | MS.gene039110 | PPI |
| MS.gene025997 | MS.gene98041 | PPI |
| MS.gene063366 | MS.gene98041 | PPI |
| MS.gene98041 | MS.gene050556 | PPI |
| MS.gene066163 | MS.gene98041 | PPI |
| MS.gene040581 | MS.gene98041 | PPI |
| MS.gene003452 | MS.gene98041 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98041.t1 | MTR_5g075530 | 99.270 | 274 | 2 | 0 | 1 | 274 | 49 | 322 | 0.0 | 558 |
| MS.gene98041.t1 | MTR_3g467620 | 83.577 | 274 | 39 | 3 | 1 | 274 | 1 | 268 | 9.26e-150 | 419 |
| MS.gene98041.t1 | MTR_5g075530 | 98.844 | 173 | 2 | 0 | 1 | 173 | 49 | 221 | 1.09e-121 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98041.t1 | AT5G20920 | 72.794 | 272 | 66 | 3 | 1 | 270 | 1 | 266 | 8.11e-133 | 377 |
| MS.gene98041.t1 | AT5G20920 | 72.794 | 272 | 66 | 3 | 1 | 270 | 1 | 266 | 8.11e-133 | 377 |
| MS.gene98041.t1 | AT5G20920 | 72.794 | 272 | 65 | 4 | 1 | 270 | 1 | 265 | 2.18e-131 | 373 |
| MS.gene98041.t1 | AT3G07920 | 68.421 | 152 | 40 | 2 | 123 | 270 | 17 | 164 | 1.82e-68 | 209 |
| MS.gene98041.t1 | AT5G01940 | 55.634 | 142 | 58 | 3 | 119 | 259 | 72 | 209 | 8.08e-48 | 159 |
| MS.gene98041.t1 | AT5G01940 | 55.634 | 142 | 58 | 3 | 119 | 259 | 104 | 241 | 1.33e-47 | 159 |
| MS.gene98041.t1 | AT5G01940 | 52.564 | 156 | 65 | 4 | 119 | 267 | 72 | 225 | 1.11e-45 | 154 |
Find 69 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTTCTTGCTTGCTGAAC+TGG | 0.152413 | 5.1:-58002124 | MS.gene98041:CDS |
| TGATGAATCAATGGATAAAT+TGG | 0.263265 | 5.1:-58003750 | MS.gene98041:CDS |
| AGAATTCCTTCAAAGTTCTT+TGG | 0.305356 | 5.1:+58002045 | None:intergenic |
| TGGAGAGGCAGTTGAAGATT+TGG | 0.342163 | 5.1:-58003390 | MS.gene98041:CDS |
| CTTTGCAGCCTCGTTATCCT+TGG | 0.346996 | 5.1:-58003197 | MS.gene98041:CDS |
| CGCCGATCTCCAGCCAGATC+TGG | 0.364048 | 5.1:+58002588 | None:intergenic |
| TACTGCTTGCAGTGTGGATC+AGG | 0.377983 | 5.1:-58001634 | MS.gene98041:intron |
| GATGAATATGTCATTTGTAT+TGG | 0.394913 | 5.1:-58001788 | MS.gene98041:CDS |
| GGTACTAGTGGTTCCCTTGA+TGG | 0.396000 | 5.1:-58002102 | MS.gene98041:CDS |
| GCAACAAAACCAGCTTTGAT+TGG | 0.396441 | 5.1:+58001598 | None:intergenic |
| TCCTTTGAAAGTAATGTGTC+TGG | 0.399517 | 5.1:+58001755 | None:intergenic |
| TTGTGCCTTCACGGAGAACT+TGG | 0.412424 | 5.1:+58002544 | None:intergenic |
| TTTGCACCAAAGAACTTTGA+AGG | 0.417542 | 5.1:-58002051 | MS.gene98041:CDS |
| CCTTGATGGACAACAGAGAT+TGG | 0.437686 | 5.1:-58002088 | MS.gene98041:CDS |
| TCCATTGATTCATCATCTGC+AGG | 0.449745 | 5.1:+58003758 | None:intergenic |
| TGTGCCTTCACGGAGAACTT+GGG | 0.454068 | 5.1:+58002545 | None:intergenic |
| CCAATCTCTGTTGTCCATCA+AGG | 0.456276 | 5.1:+58002088 | None:intergenic |
| TATTCACTTGCAGTTTCTGA+TGG | 0.471762 | 5.1:-58003598 | MS.gene98041:intron |
| GTGTTGGCAGAAGGAATGCC+GGG | 0.472327 | 5.1:-58001573 | MS.gene98041:CDS |
| AAGAAAGCCATAACATGGTC+TGG | 0.472766 | 5.1:+58002138 | None:intergenic |
| GCTTTCTTGCTTGCTGAACT+GGG | 0.473966 | 5.1:-58002123 | MS.gene98041:CDS |
| TGAAACACCAAGTGGTTTGA+AGG | 0.477271 | 5.1:-58004919 | MS.gene98041:CDS |
| TTTGCAGCCTCGTTATCCTT+GGG | 0.480164 | 5.1:-58003196 | MS.gene98041:CDS |
| ACGTGAACATAATCCAGATC+TGG | 0.488853 | 5.1:-58002601 | MS.gene98041:CDS |
| CGTGTTGGCAGAAGGAATGC+CGG | 0.492506 | 5.1:-58001574 | MS.gene98041:CDS |
| TCCTGCAGATGATGAATCAA+TGG | 0.495581 | 5.1:-58003759 | MS.gene98041:CDS |
| CTTCTTTCTCCGGTGTGAGA+AGG | 0.497603 | 5.1:-58001723 | MS.gene98041:intron |
| CAGCCTCGTTATCCTTGGGA+AGG | 0.501422 | 5.1:-58003192 | MS.gene98041:CDS |
| AGAACCGTCTCTTCTTTCTC+CGG | 0.503608 | 5.1:-58001733 | MS.gene98041:CDS |
| TCGACCGCCAGACCATGTTA+TGG | 0.515326 | 5.1:-58002145 | MS.gene98041:CDS |
| TCCAGACACATTACTTTCAA+AGG | 0.516179 | 5.1:-58001756 | MS.gene98041:CDS |
| TTGTTGCTCGTGTTGGCAGA+AGG | 0.525657 | 5.1:-58001582 | MS.gene98041:CDS |
| ATCCAGATCTGGCTGGAGAT+CGG | 0.528055 | 5.1:-58002590 | MS.gene98041:CDS |
| CAACAGAGATTGGTCGTGAA+GGG | 0.528713 | 5.1:-58002078 | MS.gene98041:CDS |
| GTGCCTTCACGGAGAACTTG+GGG | 0.537378 | 5.1:+58002546 | None:intergenic |
| TGATCGTGATTATACATATG+AGG | 0.537913 | 5.1:-58003166 | MS.gene98041:CDS |
| TCAGTTGCTCCAATCAAAGC+TGG | 0.541836 | 5.1:-58001607 | MS.gene98041:CDS |
| ATCGGCGAAGGACAGTTATG+AGG | 0.542408 | 5.1:-58002572 | MS.gene98041:CDS |
| GAGAAGATAGAAAATCTGTC+AGG | 0.544015 | 5.1:-58003725 | MS.gene98041:intron |
| ACCTCCTCCTTCAAACCACT+TGG | 0.546295 | 5.1:+58004912 | None:intergenic |
| TATTAACATACGATTTGCAC+AGG | 0.547596 | 5.1:+58002493 | None:intergenic |
| ATTCACTTGCAGTTTCTGAT+GGG | 0.549550 | 5.1:-58003597 | MS.gene98041:intron |
| TTTGGTACAGCTTCTTGGCA+GGG | 0.550765 | 5.1:-58002637 | MS.gene98041:intron |
| TCTTCAACTGCCTCTCCACT+AGG | 0.552585 | 5.1:+58003395 | None:intergenic |
| CAATCTCTGTTGTCCATCAA+GGG | 0.557834 | 5.1:+58002089 | None:intergenic |
| CTTGCTGAACTGGGTACTAG+TGG | 0.558172 | 5.1:-58002114 | MS.gene98041:CDS |
| ACCAAGTGGTTTGAAGGAGG+AGG | 0.558508 | 5.1:-58004913 | MS.gene98041:CDS |
| ATCTGGCTGGAGATCGGCGA+AGG | 0.563488 | 5.1:-58002584 | MS.gene98041:CDS |
| GAACATAATCCAGATCTGGC+TGG | 0.564898 | 5.1:-58002597 | MS.gene98041:CDS |
| AGCCTCGTTATCCTTGGGAA+GGG | 0.579244 | 5.1:-58003191 | MS.gene98041:CDS |
| AATAAGGCCAAATCATGCCC+CGG | 0.603478 | 5.1:+58001555 | None:intergenic |
| CCTCCCCAAGTTCTCCGTGA+AGG | 0.608543 | 5.1:-58002549 | MS.gene98041:CDS |
| ACAACAGAGATTGGTCGTGA+AGG | 0.611687 | 5.1:-58002079 | MS.gene98041:CDS |
| TTAAATGATATTGATGAGAG+TGG | 0.613941 | 5.1:-58003419 | MS.gene98041:CDS |
| GAGGCAGTTGAAGATTTGGA+TGG | 0.616117 | 5.1:-58003386 | MS.gene98041:intron |
| CTCCCTTCCCAAGGATAACG+AGG | 0.619640 | 5.1:+58003189 | None:intergenic |
| CAAGCAAGAAAGCCATAACA+TGG | 0.625960 | 5.1:+58002133 | None:intergenic |
| CCTTCACGGAGAACTTGGGG+AGG | 0.626648 | 5.1:+58002549 | None:intergenic |
| AATACTTACTGATATATCGT+CGG | 0.636337 | 5.1:+58002022 | None:intergenic |
| TCACGATCACTCCCTTCCCA+AGG | 0.642187 | 5.1:+58003180 | None:intergenic |
| ATTGATGAGAGTGGTCCTAG+TGG | 0.645228 | 5.1:-58003410 | MS.gene98041:CDS |
| AACACCAAGTGGTTTGAAGG+AGG | 0.651800 | 5.1:-58004916 | MS.gene98041:CDS |
| TGTTGGCAGAAGGAATGCCG+GGG | 0.662824 | 5.1:-58001572 | MS.gene98041:CDS |
| TGAGAGTGGTCCTAGTGGAG+AGG | 0.666586 | 5.1:-58003405 | MS.gene98041:CDS |
| GAAGATTCACCTTCTCACAC+CGG | 0.667959 | 5.1:+58001714 | None:intergenic |
| CACACCGGAGAAAGAAGAGA+CGG | 0.669379 | 5.1:+58001729 | None:intergenic |
| TCGTGATTATACATATGAGG+AGG | 0.690862 | 5.1:-58003163 | MS.gene98041:intron |
| AAAGCCATAACATGGTCTGG+CGG | 0.709853 | 5.1:+58002141 | None:intergenic |
| ATGGCAGATGAAACACCAAG+TGG | 0.740265 | 5.1:-58004927 | MS.gene98041:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAATGACATTTTAA+AGG | - | chr5.1:58002028-58002047 | MS.gene98041:intron | 10.0% |
| !!! | AAAATGTCATTTTTTTTTAT+TGG | + | chr5.1:58002026-58002045 | None:intergenic | 10.0% |
| !!! | TGTTAATATTTTTTTTTATC+TGG | - | chr5.1:58004016-58004035 | MS.gene98041:intron | 10.0% |
| !! | ATATAATCAAATATTCTCTA+AGG | + | chr5.1:58003670-58003689 | None:intergenic | 15.0% |
| !! | TAGAGAATATTTGATTATAT+AGG | - | chr5.1:58003670-58003689 | MS.gene98041:intron | 15.0% |
| !!! | TTTTTAAAGTTATCTGAAAA+TGG | - | chr5.1:58002845-58002864 | MS.gene98041:intron | 15.0% |
| !! | AAGATACTAATATATGAATC+AGG | - | chr5.1:58002440-58002459 | MS.gene98041:intron | 20.0% |
| !! | AGTTTAATATATGATAACCA+TGG | - | chr5.1:58002596-58002615 | MS.gene98041:CDS | 20.0% |
| !! | ATACTAATATATGATAACCA+AGG | - | chr5.1:58002377-58002396 | MS.gene98041:intron | 20.0% |
| !! | ATGTTAATTAATGATCAACA+TGG | - | chr5.1:58003643-58003662 | MS.gene98041:intron | 20.0% |
| !! | ATTTATAATGCATGATATCT+TGG | - | chr5.1:58001891-58001910 | MS.gene98041:intron | 20.0% |
| !! | GATTCAAATTAGTTATTATC+TGG | - | chr5.1:58003504-58003523 | MS.gene98041:intron | 20.0% |
| !! | TGTATTTCATTCTTGTAAAT+TGG | - | chr5.1:58001846-58001865 | MS.gene98041:intron | 20.0% |
| !! | TGTTAATTAATGATCAACAT+GGG | - | chr5.1:58003644-58003663 | MS.gene98041:intron | 20.0% |
| !! | TTGTATTAAATAGTGTATCA+CGG | + | chr5.1:58001689-58001708 | None:intergenic | 20.0% |
| !! | TTGTTAAACAATAGCTATAT+CGG | - | chr5.1:58001655-58001674 | MS.gene98041:intron | 20.0% |
| !!! | AATAGTTTAATTGACTGTTT+TGG | - | chr5.1:58003558-58003577 | MS.gene98041:CDS | 20.0% |
| !!! | ATAGTTTAATTGACTGTTTT+GGG | - | chr5.1:58003559-58003578 | MS.gene98041:CDS | 20.0% |
| !!! | ATATAATTTGTGTTTGATAG+TGG | - | chr5.1:58003158-58003177 | MS.gene98041:intron | 20.0% |
| !!! | ATGACATTTTAAAGGAAATT+AGG | - | chr5.1:58002036-58002055 | MS.gene98041:CDS | 20.0% |
| !!! | CTAGAAATTTTTGTATTGAT+TGG | - | chr5.1:58002311-58002330 | MS.gene98041:intron | 20.0% |
| !!! | GTGATTCAAATTAGTTTTTT+TGG | - | chr5.1:58003473-58003492 | MS.gene98041:intron | 20.0% |
| !!! | TTCTTTTGTCATTTGATTTA+TGG | + | chr5.1:58002133-58002152 | None:intergenic | 20.0% |
| !!! | TTGATAATAAGATTCAATTC+AGG | + | chr5.1:58001988-58002007 | None:intergenic | 20.0% |
| ! | AACAGTCAATTAAACTATTC+TGG | + | chr5.1:58003557-58003576 | None:intergenic | 25.0% |
| ! | AAGTGAATAAAGAATAACCA+AGG | + | chr5.1:58004208-58004227 | None:intergenic | 25.0% |
| ! | AATACTGAATGGTAAAACAA+TGG | + | chr5.1:58004826-58004845 | None:intergenic | 25.0% |
| ! | AATACTTACTGATATATCGT+CGG | + | chr5.1:58004475-58004494 | None:intergenic | 25.0% |
| ! | AATCCACAAGGAAAAAAAAA+GGG | + | chr5.1:58003827-58003846 | None:intergenic | 25.0% |
| ! | AATGGTAAAACAATGGAAAT+GGG | + | chr5.1:58004819-58004838 | None:intergenic | 25.0% |
| ! | ACAAAAAAAACCGATTACAT+CGG | + | chr5.1:58001829-58001848 | None:intergenic | 25.0% |
| ! | ACTGAAAAAAAAGTTGTTGT+TGG | - | chr5.1:58002171-58002190 | MS.gene98041:intron | 25.0% |
| ! | AGTGAATAAAGAATAACCAA+GGG | + | chr5.1:58004207-58004226 | None:intergenic | 25.0% |
| ! | ATACCAATATATGATAACCA+TGG | - | chr5.1:58002563-58002582 | MS.gene98041:CDS | 25.0% |
| ! | ATGTACATCAGCATAAAAAA+TGG | + | chr5.1:58003361-58003380 | None:intergenic | 25.0% |
| ! | CAAATAAAAAACTTCAACTC+TGG | + | chr5.1:58002982-58003001 | None:intergenic | 25.0% |
| ! | GTATGTAGAAGAAAAATACT+GGG | + | chr5.1:58004248-58004267 | None:intergenic | 25.0% |
| ! | TAATATATGATAACCAAGGT+TGG | - | chr5.1:58002381-58002400 | MS.gene98041:intron | 25.0% |
| ! | TAATATATGATAACCATGGT+TGG | - | chr5.1:58002600-58002619 | MS.gene98041:CDS | 25.0% |
| ! | TGATGAATCAATGGATAAAT+TGG | - | chr5.1:58002744-58002763 | MS.gene98041:intron | 25.0% |
| ! | TTAAAGTTATCTGAAAATGG+TGG | - | chr5.1:58002848-58002867 | MS.gene98041:intron | 25.0% |
| ! | TTAAATGATATTGATGAGAG+TGG | - | chr5.1:58003075-58003094 | MS.gene98041:intron | 25.0% |
| ! | TTCCAAGTAAAAACTGAAAA+GGG | + | chr5.1:58003788-58003807 | None:intergenic | 25.0% |
| ! | TTTCCAAGTAAAAACTGAAA+AGG | + | chr5.1:58003789-58003808 | None:intergenic | 25.0% |
| !! | AACTGTGTTTGTGAATTTTA+TGG | - | chr5.1:58003977-58003996 | MS.gene98041:intron | 25.0% |
| !! | ATTCTACATTTTATCCTTGT+TGG | - | chr5.1:58003693-58003712 | MS.gene98041:intron | 25.0% |
| !! | ATTCTTGTAAATTGGTGATT+TGG | - | chr5.1:58001854-58001873 | MS.gene98041:intron | 25.0% |
| !! | GATGAATATGTCATTTGTAT+TGG | - | chr5.1:58004706-58004725 | MS.gene98041:intron | 25.0% |
| !! | GGTTATTTCAAACTATGAAT+AGG | - | chr5.1:58001944-58001963 | MS.gene98041:intron | 25.0% |
| !! | TTCATAGTTTGAAATAACCA+TGG | + | chr5.1:58001943-58001962 | None:intergenic | 25.0% |
| !! | TTCTTCTTCTTTTTCTTAGT+AGG | + | chr5.1:58002697-58002716 | None:intergenic | 25.0% |
| !! | TTGAATCTTGAATCATTTTG+AGG | + | chr5.1:58002109-58002128 | None:intergenic | 25.0% |
| !! | TTTTTCTTAGTAGGATCAAA+TGG | + | chr5.1:58002688-58002707 | None:intergenic | 25.0% |
| !!! | CAGAGTTGAAGTTTTTTATT+TGG | - | chr5.1:58002980-58002999 | MS.gene98041:intron | 25.0% |
| AGAATTCCTTCAAAGTTCTT+TGG | + | chr5.1:58004452-58004471 | None:intergenic | 30.0% | |
| AGGGAAAATAAACTTACATC+TGG | + | chr5.1:58001609-58001628 | None:intergenic | 30.0% | |
| AGTGACTCATTAGAATGAAT+CGG | - | chr5.1:58002211-58002230 | MS.gene98041:intron | 30.0% | |
| ATCCAATCAATACAAATCTC+TGG | + | chr5.1:58002502-58002521 | None:intergenic | 30.0% | |
| ATCCACAAGGAAAAAAAAAG+GGG | + | chr5.1:58003826-58003845 | None:intergenic | 30.0% | |
| CAAAAAAAACCGATTACATC+GGG | + | chr5.1:58001828-58001847 | None:intergenic | 30.0% | |
| CAACCATGGTTATCATATAT+TGG | + | chr5.1:58002569-58002588 | None:intergenic | 30.0% | |
| CAATATATGATAACCATGGT+TGG | - | chr5.1:58002567-58002586 | MS.gene98041:CDS | 30.0% | |
| CAATTCAGGATTCAGAAAAT+AGG | + | chr5.1:58001974-58001993 | None:intergenic | 30.0% | |
| GAAAACGATAGATAACTACA+GGG | + | chr5.1:58001628-58001647 | None:intergenic | 30.0% | |
| GAATCCACAAGGAAAAAAAA+AGG | + | chr5.1:58003828-58003847 | None:intergenic | 30.0% | |
| GAATGGTAAAACAATGGAAA+TGG | + | chr5.1:58004820-58004839 | None:intergenic | 30.0% | |
| GAGGATAAAAAATCAGTTTC+TGG | + | chr5.1:58004270-58004289 | None:intergenic | 30.0% | |
| GCTAATGAATGCTAAACTTA+TGG | - | chr5.1:58003222-58003241 | MS.gene98041:CDS | 30.0% | |
| GGTATGTAGAAGAAAAATAC+TGG | + | chr5.1:58004249-58004268 | None:intergenic | 30.0% | |
| TAATTTGAATCACAGATGAG+AGG | + | chr5.1:58003466-58003485 | None:intergenic | 30.0% | |
| TATTAACATACGATTTGCAC+AGG | + | chr5.1:58004004-58004023 | None:intergenic | 30.0% | |
| TGAAAACGATAGATAACTAC+AGG | + | chr5.1:58001629-58001648 | None:intergenic | 30.0% | |
| TGATCGTGATTATACATATG+AGG | - | chr5.1:58003328-58003347 | MS.gene98041:intron | 30.0% | |
| TTAAAAACATAAACCATGCC+AGG | + | chr5.1:58002832-58002851 | None:intergenic | 30.0% | |
| TTTGGCTAGACTAGATTTAT+TGG | - | chr5.1:58002998-58003017 | MS.gene98041:intron | 30.0% | |
| ! | AAAATCGTTTAGAATCCACA+AGG | + | chr5.1:58003839-58003858 | None:intergenic | 30.0% |
| ! | TACCCTTTTCAGTTTTTACT+TGG | - | chr5.1:58003783-58003802 | MS.gene98041:CDS | 30.0% |
| ! | TGACAGATTTTCTATCTTCT+CGG | + | chr5.1:58002770-58002789 | None:intergenic | 30.0% |
| ! | TGTGGATTCTAAACGATTTT+TGG | - | chr5.1:58003839-58003858 | MS.gene98041:intron | 30.0% |
| !! | AATGACAAAAGAAAAGTGTC+TGG | - | chr5.1:58002140-58002159 | MS.gene98041:CDS | 30.0% |
| !! | GAAGTTTGTTATTTGATTGC+AGG | - | chr5.1:58003038-58003057 | MS.gene98041:intron | 30.0% |
| !! | TGAAAGCATTCTTAAAACCA+AGG | + | chr5.1:58001782-58001801 | None:intergenic | 30.0% |
| AAATCAGCTCAGAAACACTA+TGG | + | chr5.1:58003441-58003460 | None:intergenic | 35.0% | |
| AATCTGCTGCATTTCAGAAA+TGG | - | chr5.1:58004512-58004531 | MS.gene98041:intron | 35.0% | |
| AATGCATGATATCTTGGTCA+TGG | - | chr5.1:58001897-58001916 | MS.gene98041:intron | 35.0% | |
| ACATCTTGAACTTTCACTAG+AGG | - | chr5.1:58004053-58004072 | MS.gene98041:intron | 35.0% | |
| ATTCACTTGCAGTTTCTGAT+GGG | - | chr5.1:58002897-58002916 | MS.gene98041:intron | 35.0% | |
| GAGAAGATAGAAAATCTGTC+AGG | - | chr5.1:58002769-58002788 | MS.gene98041:intron | 35.0% | |
| GAGGTTAGTAGATGATACAA+GGG | + | chr5.1:58002090-58002109 | None:intergenic | 35.0% | |
| GGGATTTATGACAATGAATC+AGG | - | chr5.1:58002252-58002271 | MS.gene98041:intron | 35.0% | |
| GGGTAGATTGAAAATGCTTT+AGG | + | chr5.1:58003768-58003787 | None:intergenic | 35.0% | |
| GTGACTCATTAGAATGAATC+GGG | - | chr5.1:58002212-58002231 | MS.gene98041:intron | 35.0% | |
| GTTATCTGAAAATGGTGGTT+AGG | - | chr5.1:58002853-58002872 | MS.gene98041:intron | 35.0% | |
| TATTCACTTGCAGTTTCTGA+TGG | - | chr5.1:58002896-58002915 | MS.gene98041:intron | 35.0% | |
| TCCAGACACATTACTTTCAA+AGG | - | chr5.1:58004738-58004757 | MS.gene98041:intron | 35.0% | |
| TCGTGATTATACATATGAGG+AGG | - | chr5.1:58003331-58003350 | MS.gene98041:intron | 35.0% | |
| TGAGGTTAGTAGATGATACA+AGG | + | chr5.1:58002091-58002110 | None:intergenic | 35.0% | |
| TTTGCACCAAAGAACTTTGA+AGG | - | chr5.1:58004443-58004462 | MS.gene98041:intron | 35.0% | |
| ! | ATTGGTAGCAATTTGACACT+TGG | - | chr5.1:58003016-58003035 | MS.gene98041:intron | 35.0% |
| ! | CACCAGAGATTTGTATTGAT+TGG | - | chr5.1:58002497-58002516 | MS.gene98041:intron | 35.0% |
| ! | TCCTTTGAAAGTAATGTGTC+TGG | + | chr5.1:58004742-58004761 | None:intergenic | 35.0% |
| ! | TTAAACTGAAGTACCAACCA+TGG | + | chr5.1:58002583-58002602 | None:intergenic | 35.0% |
| ! | TTGTTGGCTACACTATGTTT+AGG | - | chr5.1:58002187-58002206 | MS.gene98041:intron | 35.0% |
| ! | TTTGTAAGCATATTAGCCTG+AGG | - | chr5.1:58004636-58004655 | MS.gene98041:intron | 35.0% |
| !! | CATTCAGTATTCTAAAACGC+TGG | - | chr5.1:58004835-58004854 | MS.gene98041:intron | 35.0% |
| !! | TAGTTATTATCTGGTTCTCG+TGG | - | chr5.1:58003513-58003532 | MS.gene98041:intron | 35.0% |
| !!! | CAGCGTTTTAGAATACTGAA+TGG | + | chr5.1:58004837-58004856 | None:intergenic | 35.0% |
| AACAAGCATTAGCAATCTCC+TGG | - | chr5.1:58002811-58002830 | MS.gene98041:intron | 40.0% | |
| AAGAAAGCCATAACATGGTC+TGG | + | chr5.1:58004359-58004378 | None:intergenic | 40.0% | |
| ACATCCAGTACAATAACCTC+AGG | + | chr5.1:58004655-58004674 | None:intergenic | 40.0% | |
| ACCATGGTACCAACTAATCA+AGG | + | chr5.1:58001927-58001946 | None:intergenic | 40.0% | |
| ACGTGAACATAATCCAGATC+TGG | - | chr5.1:58003893-58003912 | MS.gene98041:intron | 40.0% | |
| AGCAACAGCACATTAACAAG+AGG | + | chr5.1:58004301-58004320 | None:intergenic | 40.0% | |
| ATTACATCGGGCACAATCAA+AGG | + | chr5.1:58001816-58001835 | None:intergenic | 40.0% | |
| CAACAGCACATTAACAAGAG+GGG | + | chr5.1:58004299-58004318 | None:intergenic | 40.0% | |
| CAAGCAAGAAAGCCATAACA+TGG | + | chr5.1:58004364-58004383 | None:intergenic | 40.0% | |
| CAATCTCTGTTGTCCATCAA+GGG | + | chr5.1:58004408-58004427 | None:intergenic | 40.0% | |
| CACAAGGAAAAAAAAAGGGG+AGG | + | chr5.1:58003823-58003842 | None:intergenic | 40.0% | |
| CATGGATCTCCTTGATTAGT+TGG | - | chr5.1:58001915-58001934 | MS.gene98041:intron | 40.0% | |
| GACTACAAGTAATGCCTTGA+GGG | - | chr5.1:58003196-58003215 | MS.gene98041:CDS | 40.0% | |
| GCAACAGCACATTAACAAGA+GGG | + | chr5.1:58004300-58004319 | None:intergenic | 40.0% | |
| GGAAAAAAAAAGGGGAGGAT+TGG | + | chr5.1:58003818-58003837 | None:intergenic | 40.0% | |
| TCCTGCAGATGATGAATCAA+TGG | - | chr5.1:58002735-58002754 | MS.gene98041:intron | 40.0% | |
| TGAAACACCAAGTGGTTTGA+AGG | - | chr5.1:58001575-58001594 | MS.gene98041:CDS | 40.0% | |
| TGACTACAAGTAATGCCTTG+AGG | - | chr5.1:58003195-58003214 | MS.gene98041:CDS | 40.0% | |
| TTAGCCTGAGGTTATTGTAC+TGG | - | chr5.1:58004648-58004667 | MS.gene98041:intron | 40.0% | |
| TTGATTGTGCCCGATGTAAT+CGG | - | chr5.1:58001816-58001835 | MS.gene98041:intron | 40.0% | |
| ! | ACAAACTGAAGTACCAACCA+TGG | + | chr5.1:58002616-58002635 | None:intergenic | 40.0% |
| ! | ACAAACTGAAGTACCAACCT+TGG | + | chr5.1:58002397-58002416 | None:intergenic | 40.0% |
| ! | CAAGTGATTTTCATCACCCT+TGG | - | chr5.1:58004188-58004207 | MS.gene98041:intron | 40.0% |
| ! | CAGTTTTCTTTGTGCCTTCA+CGG | + | chr5.1:58003962-58003981 | None:intergenic | 40.0% |
| ! | GCAACAAAACCAGCTTTGAT+TGG | + | chr5.1:58004899-58004918 | None:intergenic | 40.0% |
| ! | TCCTTGATTAGTTGGTACCA+TGG | - | chr5.1:58001923-58001942 | MS.gene98041:intron | 40.0% |
| !! | CTCTGGAAAAAGTGTCTTAC+AGG | + | chr5.1:58002965-58002984 | None:intergenic | 40.0% |
| !! | TCCATTGATTCATCATCTGC+AGG | + | chr5.1:58002739-58002758 | None:intergenic | 40.0% |
| !! | TGAATTGGCTTGATCCAACA+AGG | + | chr5.1:58003710-58003729 | None:intergenic | 40.0% |
| !! | TTAACAAGAGGGGAGTATTG+AGG | + | chr5.1:58004289-58004308 | None:intergenic | 40.0% |
| !!! | CGATTTTTGGTACAGCTTCT+TGG | - | chr5.1:58003852-58003871 | MS.gene98041:intron | 40.0% |
| !!! | CTCCCCTTTTTTTTTCCTTG+TGG | - | chr5.1:58003821-58003840 | MS.gene98041:intron | 40.0% |
| AAAGCCATAACATGGTCTGG+CGG | + | chr5.1:58004356-58004375 | None:intergenic | 45.0% | |
| AACACCAAGTGGTTTGAAGG+AGG | - | chr5.1:58001578-58001597 | MS.gene98041:CDS | 45.0% | |
| ACAAGTAATGCCTTGAGGGA+AGG | - | chr5.1:58003200-58003219 | MS.gene98041:CDS | 45.0% | |
| AGAACCGTCTCTTCTTTCTC+CGG | - | chr5.1:58004761-58004780 | MS.gene98041:intron | 45.0% | |
| ATGGCAGATGAAACACCAAG+TGG | - | chr5.1:58001567-58001586 | MS.gene98041:CDS | 45.0% | |
| ATTGATGAGAGTGGTCCTAG+TGG | - | chr5.1:58003084-58003103 | MS.gene98041:intron | 45.0% | |
| CCAATCTCTGTTGTCCATCA+AGG | + | chr5.1:58004409-58004428 | None:intergenic | 45.0% | |
| GAACATAATCCAGATCTGGC+TGG | - | chr5.1:58003897-58003916 | MS.gene98041:intron | 45.0% | |
| GAAGATTCACCTTCTCACAC+CGG | + | chr5.1:58004783-58004802 | None:intergenic | 45.0% | |
| GAGGCAGTTGAAGATTTGGA+TGG | - | chr5.1:58003108-58003127 | MS.gene98041:intron | 45.0% | |
| GTACTGTTACCCGATCTTTC+AGG | - | chr5.1:58004321-58004340 | MS.gene98041:intron | 45.0% | |
| GTCGATGCATCCTGAAAGAT+CGG | + | chr5.1:58004334-58004353 | None:intergenic | 45.0% | |
| GTGATCCAAGGGAAGTGAAT+TGG | + | chr5.1:58003725-58003744 | None:intergenic | 45.0% | |
| TAAAACATCAGCCCGTCAGA+AGG | + | chr5.1:58003585-58003604 | None:intergenic | 45.0% | |
| TCAAGCCAATTCACTTCCCT+TGG | - | chr5.1:58003717-58003736 | MS.gene98041:intron | 45.0% | |
| TCAGTTGCTCCAATCAAAGC+TGG | - | chr5.1:58004887-58004906 | MS.gene98041:intron | 45.0% | |
| TCGATGCATCCTGAAAGATC+GGG | + | chr5.1:58004333-58004352 | None:intergenic | 45.0% | |
| TGGAGAGGCAGTTGAAGATT+TGG | - | chr5.1:58003104-58003123 | MS.gene98041:intron | 45.0% | |
| TTTGCAGCCTCGTTATCCTT+GGG | - | chr5.1:58003298-58003317 | MS.gene98041:intron | 45.0% | |
| TTTGGTACAGCTTCTTGGCA+GGG | - | chr5.1:58003857-58003876 | MS.gene98041:intron | 45.0% | |
| ! | ACAACAGAGATTGGTCGTGA+AGG | - | chr5.1:58004415-58004434 | MS.gene98041:intron | 45.0% |
| ! | CAACAGAGATTGGTCGTGAA+GGG | - | chr5.1:58004416-58004435 | MS.gene98041:intron | 45.0% |
| ! | CCTTGATGGACAACAGAGAT+TGG | - | chr5.1:58004406-58004425 | MS.gene98041:intron | 45.0% |
| ! | GCTTTCTTGCTTGCTGAACT+GGG | - | chr5.1:58004371-58004390 | MS.gene98041:intron | 45.0% |
| ! | TTTTGGTACAGCTTCTTGGC+AGG | - | chr5.1:58003856-58003875 | MS.gene98041:intron | 45.0% |
| !! | CATTCATTAGCCTTCCCTCA+AGG | + | chr5.1:58003213-58003232 | None:intergenic | 45.0% |
| !! | CAATAAATAATATTATAAAT+TGG | - | chr5.1:58004077-58004096 | MS.gene98041:intron | 5.0% |
| !! | CAATTTATAATATTATTTAT+TGG | + | chr5.1:58004079-58004098 | None:intergenic | 5.0% |
| ACCAAGGTTGACGCAGATAG+CGG | + | chr5.1:58001766-58001785 | None:intergenic | 50.0% | |
| ACCAAGTGGTTTGAAGGAGG+AGG | - | chr5.1:58001581-58001600 | MS.gene98041:CDS | 50.0% | |
| ACCTCCTCCTTCAAACCACT+TGG | + | chr5.1:58001585-58001604 | None:intergenic | 50.0% | |
| AGCCTCGTTATCCTTGGGAA+GGG | - | chr5.1:58003303-58003322 | MS.gene98041:intron | 50.0% | |
| ATCCAGATCTGGCTGGAGAT+CGG | - | chr5.1:58003904-58003923 | MS.gene98041:intron | 50.0% | |
| ATCGGCGAAGGACAGTTATG+AGG | - | chr5.1:58003922-58003941 | MS.gene98041:intron | 50.0% | |
| CACACCGGAGAAAGAAGAGA+CGG | + | chr5.1:58004768-58004787 | None:intergenic | 50.0% | |
| CTGGTTTACTGCTTGCAGTG+TGG | - | chr5.1:58004854-58004873 | MS.gene98041:intron | 50.0% | |
| CTTCTTTCTCCGGTGTGAGA+AGG | - | chr5.1:58004771-58004790 | MS.gene98041:intron | 50.0% | |
| CTTGCTGAACTGGGTACTAG+TGG | - | chr5.1:58004380-58004399 | MS.gene98041:intron | 50.0% | |
| CTTTGCAGCCTCGTTATCCT+TGG | - | chr5.1:58003297-58003316 | MS.gene98041:intron | 50.0% | |
| GAACACAGCTCGTGATCCAA+GGG | + | chr5.1:58003736-58003755 | None:intergenic | 50.0% | |
| GCATTAGCAATCTCCTGGCA+TGG | - | chr5.1:58002816-58002835 | MS.gene98041:intron | 50.0% | |
| GGTACTAGTGGTTCCCTTGA+TGG | - | chr5.1:58004392-58004411 | MS.gene98041:intron | 50.0% | |
| TACTGCTTGCAGTGTGGATC+AGG | - | chr5.1:58004860-58004879 | MS.gene98041:intron | 50.0% | |
| TCTTCAACTGCCTCTCCACT+AGG | + | chr5.1:58003102-58003121 | None:intergenic | 50.0% | |
| TGAACACAGCTCGTGATCCA+AGG | + | chr5.1:58003737-58003756 | None:intergenic | 50.0% | |
| TGTGCCTTCACGGAGAACTT+GGG | + | chr5.1:58003952-58003971 | None:intergenic | 50.0% | |
| TTGTGCCTTCACGGAGAACT+TGG | + | chr5.1:58003953-58003972 | None:intergenic | 50.0% | |
| ! | GGCTTTCTTGCTTGCTGAAC+TGG | - | chr5.1:58004370-58004389 | MS.gene98041:intron | 50.0% |
| ! | GGGACTGACAGTGCATTTTC+TGG | - | chr5.1:58002917-58002936 | MS.gene98041:intron | 50.0% |
| ! | TTGTTGCTCGTGTTGGCAGA+AGG | - | chr5.1:58004912-58004931 | MS.gene98041:CDS | 50.0% |
| !! | ACTGTTTTGGGCCTTCTGAC+GGG | - | chr5.1:58003571-58003590 | MS.gene98041:CDS | 50.0% |
| !! | GACTGTTTTGGGCCTTCTGA+CGG | - | chr5.1:58003570-58003589 | MS.gene98041:CDS | 50.0% |
| !!! | GCTGGTTTTGTTGCTCGTGT+TGG | - | chr5.1:58004905-58004924 | MS.gene98041:CDS | 50.0% |
| CAGCCTCGTTATCCTTGGGA+AGG | - | chr5.1:58003302-58003321 | MS.gene98041:intron | 55.0% | |
| CGGGATGCATTGCAGTGAGT+CGG | - | chr5.1:58002231-58002250 | MS.gene98041:intron | 55.0% | |
| CTCCCTTCCCAAGGATAACG+AGG | + | chr5.1:58003308-58003327 | None:intergenic | 55.0% | |
| GGGATGCATTGCAGTGAGTC+GGG | - | chr5.1:58002232-58002251 | MS.gene98041:intron | 55.0% | |
| GTGCCTTCACGGAGAACTTG+GGG | + | chr5.1:58003951-58003970 | None:intergenic | 55.0% | |
| TCACGATCACTCCCTTCCCA+AGG | + | chr5.1:58003317-58003336 | None:intergenic | 55.0% | |
| TCCGCTATCTGCGTCAACCT+TGG | - | chr5.1:58001762-58001781 | MS.gene98041:CDS | 55.0% | |
| TCGACCGCCAGACCATGTTA+TGG | - | chr5.1:58004349-58004368 | MS.gene98041:intron | 55.0% | |
| TGAGAGTGGTCCTAGTGGAG+AGG | - | chr5.1:58003089-58003108 | MS.gene98041:intron | 55.0% | |
| TGTTGGCAGAAGGAATGCCG+GGG | - | chr5.1:58004922-58004941 | MS.gene98041:CDS | 55.0% | |
| ! | CGTGTTGGCAGAAGGAATGC+CGG | - | chr5.1:58004920-58004939 | MS.gene98041:CDS | 55.0% |
| ! | GTGTTGGCAGAAGGAATGCC+GGG | - | chr5.1:58004921-58004940 | MS.gene98041:CDS | 55.0% |
| ATCTGGCTGGAGATCGGCGA+AGG | - | chr5.1:58003910-58003929 | MS.gene98041:intron | 60.0% | |
| CCTCCCCAAGTTCTCCGTGA+AGG | - | chr5.1:58003945-58003964 | MS.gene98041:intron | 60.0% | |
| CCTTCACGGAGAACTTGGGG+AGG | + | chr5.1:58003948-58003967 | None:intergenic | 60.0% | |
| CGCCGATCTCCAGCCAGATC+TGG | + | chr5.1:58003909-58003928 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 58001567 | 58004949 | 58001567 | ID=MS.gene98041 |
| chr5.1 | mRNA | 58001567 | 58004949 | 58001567 | ID=MS.gene98041.t1;Parent=MS.gene98041 |
| chr5.1 | exon | 58004905 | 58004949 | 58004905 | ID=MS.gene98041.t1.exon1;Parent=MS.gene98041.t1 |
| chr5.1 | CDS | 58004905 | 58004949 | 58004905 | ID=cds.MS.gene98041.t1;Parent=MS.gene98041.t1 |
| chr5.1 | exon | 58003726 | 58003837 | 58003726 | ID=MS.gene98041.t1.exon2;Parent=MS.gene98041.t1 |
| chr5.1 | CDS | 58003726 | 58003837 | 58003726 | ID=cds.MS.gene98041.t1;Parent=MS.gene98041.t1 |
| chr5.1 | exon | 58003552 | 58003607 | 58003552 | ID=MS.gene98041.t1.exon3;Parent=MS.gene98041.t1 |
| chr5.1 | CDS | 58003552 | 58003607 | 58003552 | ID=cds.MS.gene98041.t1;Parent=MS.gene98041.t1 |
| chr5.1 | exon | 58003387 | 58003456 | 58003387 | ID=MS.gene98041.t1.exon4;Parent=MS.gene98041.t1 |
| chr5.1 | CDS | 58003387 | 58003456 | 58003387 | ID=cds.MS.gene98041.t1;Parent=MS.gene98041.t1 |
| chr5.1 | exon | 58003164 | 58003252 | 58003164 | ID=MS.gene98041.t1.exon5;Parent=MS.gene98041.t1 |
| chr5.1 | CDS | 58003164 | 58003252 | 58003164 | ID=cds.MS.gene98041.t1;Parent=MS.gene98041.t1 |
| chr5.1 | exon | 58002504 | 58002649 | 58002504 | ID=MS.gene98041.t1.exon6;Parent=MS.gene98041.t1 |
| chr5.1 | CDS | 58002504 | 58002649 | 58002504 | ID=cds.MS.gene98041.t1;Parent=MS.gene98041.t1 |
| chr5.1 | exon | 58002031 | 58002173 | 58002031 | ID=MS.gene98041.t1.exon7;Parent=MS.gene98041.t1 |
| chr5.1 | CDS | 58002031 | 58002173 | 58002031 | ID=cds.MS.gene98041.t1;Parent=MS.gene98041.t1 |
| chr5.1 | exon | 58001724 | 58001809 | 58001724 | ID=MS.gene98041.t1.exon8;Parent=MS.gene98041.t1 |
| chr5.1 | CDS | 58001724 | 58001809 | 58001724 | ID=cds.MS.gene98041.t1;Parent=MS.gene98041.t1 |
| chr5.1 | exon | 58001567 | 58001644 | 58001567 | ID=MS.gene98041.t1.exon9;Parent=MS.gene98041.t1 |
| chr5.1 | CDS | 58001567 | 58001644 | 58001567 | ID=cds.MS.gene98041.t1;Parent=MS.gene98041.t1 |
| Gene Sequence |
| Protein sequence |
