AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98090.t1 MTR_3g081640 76.081 347 70 1 1 334 15 361 0.0 505
MS.gene98090.t1 MTR_3g081580 73.837 344 80 3 1 334 15 358 7.81e-171 479
MS.gene98090.t1 MTR_3g082050 75.444 338 78 1 2 334 12 349 5.53e-163 459
MS.gene98090.t1 MTR_3g082050 75.522 335 77 1 5 334 43 377 4.64e-162 457
MS.gene98090.t1 MTR_3g082050 76.025 317 71 1 23 334 56 372 9.85e-160 451
MS.gene98090.t1 MTR_3g081690 75.549 319 73 1 2 315 12 330 2.14e-152 431
MS.gene98090.t1 MTR_3g081690 76.174 298 66 1 23 315 56 353 4.11e-149 424
MS.gene98090.t1 MTR_2g064310 56.560 343 139 3 2 334 16 358 2.50e-132 381
MS.gene98090.t1 MTR_8g105030 49.405 336 159 3 1 328 15 347 5.64e-106 315
MS.gene98090.t1 MTR_6g007687 50.882 340 151 4 1 332 14 345 6.06e-106 314
MS.gene98090.t1 MTR_4g083570 48.521 338 170 3 1 334 13 350 8.31e-106 313
MS.gene98090.t1 MTR_3g104400 47.091 361 150 4 15 334 5 365 2.98e-101 302
MS.gene98090.t1 MTR_1g016120 46.133 362 153 6 15 334 13 374 3.95e-94 285
MS.gene98090.t1 MTR_3g081690 71.239 226 57 2 98 315 14 239 3.14e-92 275
MS.gene98090.t1 MTR_3g081690 73.958 192 50 0 124 315 4 195 7.45e-83 250
MS.gene98090.t1 MTR_3g081690 75.806 186 45 0 130 315 32 217 9.31e-82 248
MS.gene98090.t1 MTR_5g071990 42.598 331 161 8 11 334 10 318 1.79e-77 240
MS.gene98090.t1 MTR_3g081630 52.809 89 32 3 67 155 23 101 3.52e-19 82.8
MS.gene98090.t1 MTR_4g006710 44.186 86 47 1 23 108 26 110 1.12e-14 69.7
MS.gene98090.t1 MTR_2g097580 22.184 293 197 10 51 333 64 335 4.44e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98090.t1 AT3G12750 55.362 345 137 4 1 334 17 355 8.41e-128 370
MS.gene98090.t1 AT1G05300 54.545 330 137 4 16 334 33 360 4.00e-117 343
MS.gene98090.t1 AT2G32270 52.941 340 133 5 4 334 18 339 1.50e-110 325
MS.gene98090.t1 AT1G31260 49.112 338 160 3 9 334 27 364 1.10e-106 316
MS.gene98090.t1 AT5G62160 51.009 347 152 7 1 334 14 355 2.65e-106 315
MS.gene98090.t1 AT4G19680 46.746 338 171 4 3 334 16 350 3.64e-100 299
MS.gene98090.t1 AT4G19690 47.006 334 168 2 3 334 21 347 1.46e-97 292
MS.gene98090.t1 AT2G04032 48.148 324 149 5 24 334 48 365 8.33e-97 291
MS.gene98090.t1 AT1G10970 44.658 365 156 5 16 334 10 374 1.62e-92 280
MS.gene98090.t1 AT1G10970 44.658 365 156 5 16 334 10 374 1.62e-92 280
MS.gene98090.t1 AT1G60960 41.310 397 169 7 2 334 19 415 1.41e-88 272
MS.gene98090.t1 AT1G60960 41.310 397 169 7 2 334 29 425 1.82e-88 272
MS.gene98090.t1 AT4G33020 40.811 370 166 5 15 334 25 391 6.82e-85 261
MS.gene98090.t1 AT4G33020 40.462 346 155 4 37 334 2 344 3.94e-78 243
MS.gene98090.t1 AT2G30080 42.769 325 172 6 23 334 18 341 1.19e-73 231
MS.gene98090.t1 AT1G05300 50.655 229 100 4 16 233 33 259 1.48e-68 216
MS.gene98090.t1 AT4G19680 44.351 239 124 4 3 235 16 251 1.14e-61 197
MS.gene98090.t1 AT4G19690 38.587 184 104 2 3 184 21 197 3.71e-30 114
MS.gene98090.t1 AT1G60960 35.238 210 100 5 2 175 29 238 1.08e-27 110
MS.gene98090.t1 AT1G55910 23.718 312 194 11 7 305 17 297 1.66e-12 67.8

Find 59 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTAATTCACCTTGTTTAA+AGG 0.198892 7.2:-70898768 MS.gene98090:CDS
AGCCGGAATCTTAATTTATA+TGG 0.200488 7.2:-70897241 MS.gene98090:CDS
GTTATTCATTCGGTTATAAT+AGG 0.239840 7.2:-70898350 MS.gene98090:CDS
TGCAGCTACGAGTGGCTTTA+TGG 0.261742 7.2:+70898295 None:intergenic
CTTCATGCTCTACATCATTC+TGG 0.327634 7.2:+70898618 None:intergenic
GAGATAGAATGCATCCTAAT+AGG 0.339466 7.2:+70897157 None:intergenic
AATAGTAAAAGACTCCTATT+AGG 0.354349 7.2:-70897171 MS.gene98090:CDS
TGCCATATAAATTAAGATTC+CGG 0.361053 7.2:+70897239 None:intergenic
TTACCTGTGATATAACTCTA+TGG 0.368344 7.2:+70898513 None:intergenic
TTGTTTAAAGGATCATCCTT+GGG 0.389742 7.2:-70898756 MS.gene98090:CDS
ATAGCCACGAATTCGGCTAA+TGG 0.397053 7.2:+70898725 None:intergenic
GTTGGGTATTGTTATTCATT+CGG 0.409575 7.2:-70898360 MS.gene98090:CDS
CCTAAGGCTCTTATTGTTGA+AGG 0.411092 7.2:-70897282 MS.gene98090:CDS
TGCATTCTATCTCTTGTACT+TGG 0.416873 7.2:-70897147 MS.gene98090:CDS
CTTCTGCGGCTGTTAGTGTT+GGG 0.421692 7.2:+70899026 None:intergenic
TTGACTACTCCGGTAGGGAT+TGG 0.423041 7.2:-70897345 MS.gene98090:CDS
AGAGAACATAGCCACGAATT+CGG 0.428544 7.2:+70898718 None:intergenic
GGTATCACTTTGCCGAGAAA+AGG 0.433323 7.2:+70898896 None:intergenic
TATCTTGTAAACAAGGGCTT+TGG 0.436160 7.2:+70898967 None:intergenic
CCTTCTGCGGCTGTTAGTGT+TGG 0.438219 7.2:+70899025 None:intergenic
CCTTCAACAATAAGAGCCTT+AGG 0.440595 7.2:+70897282 None:intergenic
CTGTTAGTGTTGGGATTATG+AGG 0.443819 7.2:+70899035 None:intergenic
GAATGTATCTATTGCAATCA+TGG 0.445997 7.2:-70897382 MS.gene98090:CDS
TTAAGACTCTCTGAAGCATC+CGG 0.452112 7.2:+70898785 None:intergenic
CTTGTTTAAAGGATCATCCT+TGG 0.464419 7.2:-70898757 MS.gene98090:CDS
CTATCTCTTGTACTTGGAGC+CGG 0.477778 7.2:-70897141 MS.gene98090:CDS
AATGTATAGGTGCTGGAGTT+GGG 0.481740 7.2:-70898377 MS.gene98090:intron
GTAGGGATTGGAATTGGTCT+AGG 0.485389 7.2:-70897333 MS.gene98090:CDS
ACTCCGGTAGGGATTGGAAT+TGG 0.485985 7.2:-70897339 MS.gene98090:CDS
CGGGAGCACATGAACGAAAC+CGG 0.489796 7.2:+70898805 None:intergenic
CGGTTTCGTTCATGTGCTCC+CGG 0.492507 7.2:-70898804 MS.gene98090:CDS
CATGGTCATGCCTCTACAGA+TGG 0.493108 7.2:-70898554 MS.gene98090:CDS
GAATGTATAGGTGCTGGAGT+TGG 0.495116 7.2:-70898378 MS.gene98090:intron
ATCTTCAATGCAGCTTCAGC+CGG 0.496676 7.2:-70897258 MS.gene98090:CDS
GTATCACTTTGCCGAGAAAA+GGG 0.498507 7.2:+70898897 None:intergenic
ATACTAGTTGCAAGTGCAAT+CGG 0.511165 7.2:-70898929 MS.gene98090:CDS
GGCTAAAAGAGACATGCAAC+CGG 0.527349 7.2:+70897122 None:intergenic
TTTCTTTGACTACTCCGGTA+GGG 0.530495 7.2:-70897350 MS.gene98090:CDS
TTCATCACATGTACCTTCTG+CGG 0.530960 7.2:+70899012 None:intergenic
TAGGGATTGGAATTGGTCTA+GGG 0.549857 7.2:-70897332 MS.gene98090:CDS
AAGCTGCTATCTTGTAAACA+AGG 0.556111 7.2:+70898960 None:intergenic
GTTATAATAGGAATTTCTCT+CGG 0.577131 7.2:-70898338 MS.gene98090:CDS
TAAGACTCTCTGAAGCATCC+GGG 0.588155 7.2:+70898786 None:intergenic
ATGGTCATGCCTCTACAGAT+GGG 0.598457 7.2:-70898553 MS.gene98090:CDS
TTATGATGAGAACAGTCCTA+AGG 0.607068 7.2:-70897298 MS.gene98090:CDS
TCGCCATAGAGTTATATCAC+AGG 0.609441 7.2:-70898516 MS.gene98090:intron
CAAGGATGATCCTTTAAACA+AGG 0.615524 7.2:+70898758 None:intergenic
TTCTGATGACCCATCTGTAG+AGG 0.617295 7.2:+70898544 None:intergenic
GCATCACACGGTCATGCACA+TGG 0.620271 7.2:-70898572 MS.gene98090:CDS
AGCTGCTATCTTGTAAACAA+GGG 0.623629 7.2:+70898961 None:intergenic
AGACCAATTCCAATCCCTAC+CGG 0.624986 7.2:+70897336 None:intergenic
TGTTTAAAGGATCATCCTTG+GGG 0.628226 7.2:-70898755 MS.gene98090:CDS
CCAACACTAACAGCCGCAGA+AGG 0.637499 7.2:-70899025 MS.gene98090:CDS
CAGAATGATGTAGAGCATGA+AGG 0.641469 7.2:-70898617 MS.gene98090:CDS
GCTTGGATGTTGTATAACCC+AGG 0.651585 7.2:-70898240 MS.gene98090:intron
AAAGTCAATGCAGCTACGAG+TGG 0.654533 7.2:+70898287 None:intergenic
GCTAATGGAAAATCACCCCA+AGG 0.677334 7.2:+70898740 None:intergenic
GTTCATACACATGCATCACA+CGG 0.678954 7.2:-70898584 MS.gene98090:CDS
GAGCACATGAACGAAACCGG+TGG 0.727435 7.2:+70898808 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTCTTAAAAAATAATTTA+AGG - chr7.2:70898481-70898500 MS.gene98090:intron 10.0%
!!! ACAAAAAATATATTTTTTTC+GGG + chr7.2:70897293-70897312 None:intergenic 10.0%
!! AATAAGTTAACAAACAATTT+AGG + chr7.2:70898721-70898740 None:intergenic 15.0%
!! ATACTAAATTGGATTTAATA+AGG + chr7.2:70898352-70898371 None:intergenic 15.0%
!! TACTAAATTGGATTTAATAA+GGG + chr7.2:70898351-70898370 None:intergenic 15.0%
!! TTTATAGTATATTCTTAAGA+TGG + chr7.2:70898579-70898598 None:intergenic 15.0%
!!! AAGTTTTATAATTTGAACTA+TGG - chr7.2:70898539-70898558 MS.gene98090:CDS 15.0%
!!! AGTATCTTATCTTTATATTT+TGG + chr7.2:70898218-70898237 None:intergenic 15.0%
!!! CAAAAAATATATTTTTTTCG+GGG + chr7.2:70897292-70897311 None:intergenic 15.0%
!!! TAAATTGTTTGTTAACTTAT+TGG - chr7.2:70898720-70898739 MS.gene98090:CDS 15.0%
!! AATACATGATTGTTAATTAC+TGG + chr7.2:70897996-70898015 None:intergenic 20.0%
!! AATTTAATTACTATGTACCA+TGG - chr7.2:70897691-70897710 MS.gene98090:intron 20.0%
!! ATGAATTGACTATAATTAGT+TGG - chr7.2:70898056-70898075 MS.gene98090:intron 20.0%
!! CAAAACTAAACATACTAAAT+TGG + chr7.2:70898363-70898382 None:intergenic 20.0%
!! TTGTTGAAAACTTAAAATCA+CGG + chr7.2:70897744-70897763 None:intergenic 20.0%
!!! AAAAAGAAACTTAGCTTTAT+AGG + chr7.2:70898187-70898206 None:intergenic 20.0%
!!! ATTGATTGTTTTGAATGTAT+AGG - chr7.2:70897763-70897782 MS.gene98090:intron 20.0%
!!! CAATTTAGTATGTTTAGTTT+TGG - chr7.2:70898361-70898380 MS.gene98090:CDS 20.0%
!!! TAACAATCATGTATTTTCTA+TGG - chr7.2:70898001-70898020 MS.gene98090:intron 20.0%
!!! TGATCTTTTCTTGTATATTA+GGG + chr7.2:70898697-70898716 None:intergenic 20.0%
!!! TTGATCTTTTCTTGTATATT+AGG + chr7.2:70898698-70898717 None:intergenic 20.0%
! AATAGTAAAAGACTCCTATT+AGG - chr7.2:70898982-70899001 MS.gene98090:CDS 25.0%
! AATTTGAACTATGGATATCA+TGG - chr7.2:70898548-70898567 MS.gene98090:CDS 25.0%
! GCATACTAAAAAATGATGTT+TGG + chr7.2:70898454-70898473 None:intergenic 25.0%
! GTTATAATAGGAATTTCTCT+CGG - chr7.2:70897815-70897834 MS.gene98090:intron 25.0%
! GTTATTCATTCGGTTATAAT+AGG - chr7.2:70897803-70897822 MS.gene98090:intron 25.0%
! TACTGGAAAGTAAACAAAAA+CGG + chr7.2:70897979-70897998 None:intergenic 25.0%
! TATAGAAAACACATAACTTG+TGG + chr7.2:70898656-70898675 None:intergenic 25.0%
! TGCCATATAAATTAAGATTC+CGG + chr7.2:70898917-70898936 None:intergenic 25.0%
!! ACTTTTCATCAACTTTTTGA+AGG - chr7.2:70897884-70897903 MS.gene98090:intron 25.0%
!! ATAGAAAACACATAACTTGT+GGG + chr7.2:70898655-70898674 None:intergenic 25.0%
!! TCTTAATTCACCTTGTTTAA+AGG - chr7.2:70897385-70897404 MS.gene98090:CDS 25.0%
!!! AACTTTGGTTTTCTTTATCA+TGG - chr7.2:70898122-70898141 MS.gene98090:intron 25.0%
!!! AGTTGGTATTTTTCAAACTT+TGG - chr7.2:70898073-70898092 MS.gene98090:intron 25.0%
!!! GCTAAGTTTCTTTTTGTTTT+CGG - chr7.2:70898192-70898211 MS.gene98090:intron 25.0%
!!! TCTTTTTTTGACAAGAACTT+TGG - chr7.2:70898107-70898126 MS.gene98090:intron 25.0%
AGCCGGAATCTTAATTTATA+TGG - chr7.2:70898912-70898931 MS.gene98090:CDS 30.0%
GAATGTATCTATTGCAATCA+TGG - chr7.2:70898771-70898790 MS.gene98090:CDS 30.0%
GTGATGAAAAAGATGAAGAT+AGG - chr7.2:70897156-70897175 MS.gene98090:CDS 30.0%
TTACCTGTGATATAACTCTA+TGG + chr7.2:70897643-70897662 None:intergenic 30.0%
TTCTATGTAATTGAACACCA+TGG + chr7.2:70897711-70897730 None:intergenic 30.0%
TTGGATTTAATAAGGGAGTT+TGG + chr7.2:70898344-70898363 None:intergenic 30.0%
TTGTTTAAAGGATCATCCTT+GGG - chr7.2:70897397-70897416 MS.gene98090:intron 30.0%
! GTTGGGTATTGTTATTCATT+CGG - chr7.2:70897793-70897812 MS.gene98090:intron 30.0%
! TTGATACAATTAGAGTACCT+GGG + chr7.2:70897933-70897952 None:intergenic 30.0%
!! ACGTTTTTGAAAATAAGCAG+TGG + chr7.2:70897492-70897511 None:intergenic 30.0%
AAGCTGCTATCTTGTAAACA+AGG + chr7.2:70897196-70897215 None:intergenic 35.0%
AGCTGCTATCTTGTAAACAA+GGG + chr7.2:70897195-70897214 None:intergenic 35.0%
ATACTAGTTGCAAGTGCAAT+CGG - chr7.2:70897224-70897243 MS.gene98090:CDS 35.0%
ATTGGAAATGCAATCATTGC+AGG - chr7.2:70898738-70898757 MS.gene98090:CDS 35.0%
CAAGGATGATCCTTTAAACA+AGG + chr7.2:70897398-70897417 None:intergenic 35.0%
CTTGTTTAAAGGATCATCCT+TGG - chr7.2:70897396-70897415 MS.gene98090:CDS 35.0%
GAGATAGAATGCATCCTAAT+AGG + chr7.2:70898999-70899018 None:intergenic 35.0%
TATCTTGTAAACAAGGGCTT+TGG + chr7.2:70897189-70897208 None:intergenic 35.0%
TGCATTCTATCTCTTGTACT+TGG - chr7.2:70899006-70899025 MS.gene98090:CDS 35.0%
TGTTTAAAGGATCATCCTTG+GGG - chr7.2:70897398-70897417 MS.gene98090:intron 35.0%
TTATGATGAGAACAGTCCTA+AGG - chr7.2:70898855-70898874 MS.gene98090:CDS 35.0%
TTTATGACCAATGCATTAGC+TGG - chr7.2:70898307-70898326 MS.gene98090:CDS 35.0%
! CTTGATACAATTAGAGTACC+TGG + chr7.2:70897934-70897953 None:intergenic 35.0%
! GTGGCTATGTTCTCTTTTAT+GGG - chr7.2:70897443-70897462 MS.gene98090:intron 35.0%
! GTTCTTTTCTTTGACTACTC+CGG - chr7.2:70898798-70898817 MS.gene98090:CDS 35.0%
! TGGCTATGTTCTCTTTTATG+GGG - chr7.2:70897444-70897463 MS.gene98090:intron 35.0%
! TTTTATGGGGACTCTTTTGA+TGG - chr7.2:70897457-70897476 MS.gene98090:intron 35.0%
!! ATCAACTTTTTGAAGGCATG+GGG - chr7.2:70897891-70897910 MS.gene98090:intron 35.0%
!! CATCAACTTTTTGAAGGCAT+GGG - chr7.2:70897890-70897909 MS.gene98090:intron 35.0%
!! TCATCAACTTTTTGAAGGCA+TGG - chr7.2:70897889-70897908 MS.gene98090:intron 35.0%
!! TGTTTTGAATGTATAGGTGC+TGG - chr7.2:70897769-70897788 MS.gene98090:intron 35.0%
!!! CATGTCTCTTTTAGCCTTAT+GGG - chr7.2:70899038-70899057 MS.gene98090:CDS 35.0%
AGAGAACATAGCCACGAATT+CGG + chr7.2:70897438-70897457 None:intergenic 40.0%
CAAGTTACTTGTGACTGTAC+AGG - chr7.2:70897950-70897969 MS.gene98090:intron 40.0%
CAGAATGATGTAGAGCATGA+AGG - chr7.2:70897536-70897555 MS.gene98090:intron 40.0%
CCTAAGGCTCTTATTGTTGA+AGG - chr7.2:70898871-70898890 MS.gene98090:CDS 40.0%
CCTTCAACAATAAGAGCCTT+AGG + chr7.2:70898874-70898893 None:intergenic 40.0%
CTTCATGCTCTACATCATTC+TGG + chr7.2:70897538-70897557 None:intergenic 40.0%
GTATCACTTTGCCGAGAAAA+GGG + chr7.2:70897259-70897278 None:intergenic 40.0%
GTTCATACACATGCATCACA+CGG - chr7.2:70897569-70897588 MS.gene98090:intron 40.0%
TCGCCATAGAGTTATATCAC+AGG - chr7.2:70897637-70897656 MS.gene98090:intron 40.0%
TTCATCACATGTACCTTCTG+CGG + chr7.2:70897144-70897163 None:intergenic 40.0%
TTTCGATCCAGCTAATGCAT+TGG + chr7.2:70898317-70898336 None:intergenic 40.0%
TTTCTTTGACTACTCCGGTA+GGG - chr7.2:70898803-70898822 MS.gene98090:CDS 40.0%
! CGTGGCTATGTTCTCTTTTA+TGG - chr7.2:70897442-70897461 MS.gene98090:intron 40.0%
! CTGTTAGTGTTGGGATTATG+AGG + chr7.2:70897121-70897140 None:intergenic 40.0%
! GGTGTTTGTATCCCTTTTCT+CGG - chr7.2:70897245-70897264 MS.gene98090:CDS 40.0%
! GTTATCAAAGCTTTTGCAGC+TGG - chr7.2:70897311-70897330 MS.gene98090:CDS 40.0%
! TAGGGATTGGAATTGGTCTA+GGG - chr7.2:70898821-70898840 MS.gene98090:CDS 40.0%
! TTTTCCATTAGCCGAATTCG+TGG - chr7.2:70897424-70897443 MS.gene98090:intron 40.0%
! TTTTCTTTGACTACTCCGGT+AGG - chr7.2:70898802-70898821 MS.gene98090:CDS 40.0%
!! AATGTATAGGTGCTGGAGTT+GGG - chr7.2:70897776-70897795 MS.gene98090:intron 40.0%
!! TTAAGACTCTCTGAAGCATC+CGG + chr7.2:70897371-70897390 None:intergenic 40.0%
!!! GCATGTCTCTTTTAGCCTTA+TGG - chr7.2:70899037-70899056 MS.gene98090:CDS 40.0%
!!! TTTTTTTCGGGGCTTAATGC+AGG + chr7.2:70897281-70897300 None:intergenic 40.0%
AAAGTCAATGCAGCTACGAG+TGG + chr7.2:70897869-70897888 None:intergenic 45.0%
AGACCAATTCCAATCCCTAC+CGG + chr7.2:70898820-70898839 None:intergenic 45.0%
ATAGCCACGAATTCGGCTAA+TGG + chr7.2:70897431-70897450 None:intergenic 45.0%
ATCTTCAATGCAGCTTCAGC+CGG - chr7.2:70898895-70898914 MS.gene98090:CDS 45.0%
ATGGTCATGCCTCTACAGAT+GGG - chr7.2:70897600-70897619 MS.gene98090:intron 45.0%
CTATCTCTTGTACTTGGAGC+CGG - chr7.2:70899012-70899031 MS.gene98090:CDS 45.0%
GCTAATGGAAAATCACCCCA+AGG + chr7.2:70897416-70897435 None:intergenic 45.0%
GCTTGGATGTTGTATAACCC+AGG - chr7.2:70897913-70897932 MS.gene98090:intron 45.0%
GGCTAAAAGAGACATGCAAC+CGG + chr7.2:70899034-70899053 None:intergenic 45.0%
GGTATCACTTTGCCGAGAAA+AGG + chr7.2:70897260-70897279 None:intergenic 45.0%
TTCTGATGACCCATCTGTAG+AGG + chr7.2:70897612-70897631 None:intergenic 45.0%
! GTAGGGATTGGAATTGGTCT+AGG - chr7.2:70898820-70898839 MS.gene98090:CDS 45.0%
!! GAATGTATAGGTGCTGGAGT+TGG - chr7.2:70897775-70897794 MS.gene98090:intron 45.0%
!! TAAGACTCTCTGAAGCATCC+GGG + chr7.2:70897370-70897389 None:intergenic 45.0%
!!! GCTGGTGTTATTTTAGCCAC+CGG - chr7.2:70897329-70897348 MS.gene98090:CDS 45.0%
!! TGAAATAATATAAATTTAAA+TGG - chr7.2:70898614-70898633 MS.gene98090:CDS 5.0%
!!! AACAAAAAATATATTTTTTT+CGG + chr7.2:70897294-70897313 None:intergenic 5.0%
!!! TATTAAATCATATTATATTT+TGG - chr7.2:70898388-70898407 MS.gene98090:intron 5.0%
ACTCCGGTAGGGATTGGAAT+TGG - chr7.2:70898814-70898833 MS.gene98090:CDS 50.0%
CATGGTCATGCCTCTACAGA+TGG - chr7.2:70897599-70897618 MS.gene98090:intron 50.0%
CTTCTGCGGCTGTTAGTGTT+GGG + chr7.2:70897130-70897149 None:intergenic 50.0%
TTGACTACTCCGGTAGGGAT+TGG - chr7.2:70898808-70898827 MS.gene98090:CDS 50.0%
! TGCAGCTACGAGTGGCTTTA+TGG + chr7.2:70897861-70897880 None:intergenic 50.0%
!! CTTTTTGAAGGCATGGGGCT+TGG - chr7.2:70897896-70897915 MS.gene98090:intron 50.0%
CCAACACTAACAGCCGCAGA+AGG - chr7.2:70897128-70897147 MS.gene98090:CDS 55.0%
CCTTCTGCGGCTGTTAGTGT+TGG + chr7.2:70897131-70897150 None:intergenic 55.0%
CGGTTTCGTTCATGTGCTCC+CGG - chr7.2:70897349-70897368 MS.gene98090:CDS 55.0%
GAGCACATGAACGAAACCGG+TGG + chr7.2:70897348-70897367 None:intergenic 55.0%
GCATCACACGGTCATGCACA+TGG - chr7.2:70897581-70897600 MS.gene98090:intron 55.0%
! CGGGAGCACATGAACGAAAC+CGG + chr7.2:70897351-70897370 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 70897110 70899065 70897110 ID=MS.gene98090
chr7.2 mRNA 70897110 70899065 70897110 ID=MS.gene98090.t1;Parent=MS.gene98090
chr7.2 exon 70898517 70899065 70898517 ID=MS.gene98090.t1.exon1;Parent=MS.gene98090.t1
chr7.2 CDS 70898517 70899065 70898517 ID=cds.MS.gene98090.t1;Parent=MS.gene98090.t1
chr7.2 exon 70898241 70898390 70898241 ID=MS.gene98090.t1.exon2;Parent=MS.gene98090.t1
chr7.2 CDS 70898241 70898390 70898241 ID=cds.MS.gene98090.t1;Parent=MS.gene98090.t1
chr7.2 exon 70897110 70897415 70897110 ID=MS.gene98090.t1.exon3;Parent=MS.gene98090.t1
chr7.2 CDS 70897110 70897415 70897110 ID=cds.MS.gene98090.t1;Parent=MS.gene98090.t1
Gene Sequence

>MS.gene98090

ATGATATTCCTCATAATCCCAACACTAACAGCCGCAGAAGGTACATGTGATGAAAAAGATGAAGATAGGAACAAAGCCAAAGCCCTTGTTTACAAGATAGCAGCTTTCGCATCAATACTAGTTGCAAGTGCAATCGGTGTTTGTATCCCTTTTCTCGGCAAAGTGATACCTGCATTAAGCCCCGAAAAAAATATATTTTTTGTTATCAAAGCTTTTGCAGCTGGTGTTATTTTAGCCACCGGTTTCGTTCATGTGCTCCCGGATGCTTCAGAGAGTCTTAATTCACCTTGTTTAAAGGATCATCCTTGGGGTGATTTTCCATTAGCCGAATTCGTGGCTATGTTCTCTTTTATGGGGACTCTTTTGATGGATATTTATGCCACTGCTTATTTTCAAAAACGTAATTCAAAAAGTGCATCTGTACACCAGAATGATGTAGAGCATGAAGGACAAGTGCATGTTCATACACATGCATCACACGGTCATGCACATGGTCATGCCTCTACAGATGGGTCATCAGAACTTCTTCGCCATAGAGTTATATCACAGGTAAAACTAAAGTATCATATCATATATATAAAAATTTAATTACTATGTACCATGGTGTTCAATTACATAGAAAAACTATGTACCGTGATTTTAAGTTTTCAACAATTGATTGTTTTGAATGTATAGGTGCTGGAGTTGGGTATTGTTATTCATTCGGTTATAATAGGAATTTCTCTCGGTGCTTCAGAGAATGCTAAGACCATAAAGCCACTCGTAGCTGCATTGACTTTTCATCAACTTTTTGAAGGCATGGGGCTTGGATGTTGTATAACCCAGGTACTCTAATTGTATCAAGTTACTTGTGACTGTACAGGAAACCGTTTTTGTTTACTTTCCAGTAATTAACAATCATGTATTTTCTATGGTTAGTGTGAAACATGAAAGAAACTAAGTAAATATGAATTGACTATAATTAGTTGGTATTTTTCAAACTTTGGTTTTCTTTTTTTCTTTTTTTGACAAGAACTTTGGTTTTCTTTATCATGGTTCACATATACGTAATGTGTACTTTTCATCACACTTTAACCTATAAAGCTAAGTTTCTTTTTGTTTTCGGCCAAAATATAAAGATAAGATACTTAGTACTTAATTTATTTGACATATTTGTTGATTTTTCACAAGACATCTTATTTACTCTTGAACTATATATTTATGACCAATGCATTAGCTGGATCGAAAGATGCCAAACTCCCTTATTAAATCCAATTTAGTATGTTTAGTTTTGGAATTTATTAAATCATATTATATTTTGGAACTCTGACTCTTTTATTCTCTTACTCTTTTTGTTTTTTGCCAAACATCATTTTTTAGTATGCATTTCTTAACTCTTAAAAAATAATTTAAGGTTTCACACATATCATCATTTTTTGCATGATATCTAAAGTTTTATAATTTGAACTATGGATATCATGGAATCACCATCTTAAGAATATACTATAAAAATGATTTTGATTCTTGAAATAATATAAATTTAAATGGCAAACAAAACTGATTCCCACAAGTTATGTGTTTTCTATATTTTAAAAATCTTTTGTGCCCTAATATACAAGAAAAGATCAACCTAAATTGTTTGTTAACTTATTGGAAATGCAATCATTGCAGGCAAATTTCAAGAATGTATCTATTGCAATCATGGTCTTGTTCTTTTCTTTGACTACTCCGGTAGGGATTGGAATTGGTCTAGGGATTAGCAGTGTTTATGATGAGAACAGTCCTAAGGCTCTTATTGTTGAAGGAATCTTCAATGCAGCTTCAGCCGGAATCTTAATTTATATGGCACTTGTTGATCTTCTTGCTGCTGATTTTTTTAACTCAAAGATGCAAAATAGTAAAAGACTCCTATTAGGATGCATTCTATCTCTTGTACTTGGAGCCGGTTGCATGTCTCTTTTAGCCTTATGGGCTTAG
Protein sequence

>MS.gene98090.t1

MIFLIIPTLTAAEGTCDEKDEDRNKAKALVYKIAAFASILVASAIGVCIPFLGKVIPALSPEKNIFFVIKAFAAGVILATGFVHVLPDASESLNSPCLKDHPWGDFPLAEFVAMFSFMGTLLMDIYATAYFQKRNSKSASVHQNDVEHEGQVHVHTHASHGHAHGHASTDGSSELLRHRVISQVLELGIVIHSVIIGISLGASENAKTIKPLVAALTFHQLFEGMGLGCCITQANFKNVSIAIMVLFFSLTTPVGIGIGLGISSVYDENSPKALIVEGIFNAASAGILIYMALVDLLAADFFNSKMQNSKRLLLGCILSLVLGAGCMSLLALWA