AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98501

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98501.t1 MTR_2g045360 95.804 429 17 1 1 428 1 429 0.0 811
MS.gene98501.t1 MTR_3g053330 47.162 229 108 6 185 409 225 444 6.97e-57 194
MS.gene98501.t1 MTR_7g110720 34.986 363 182 12 64 415 92 411 4.46e-52 181
MS.gene98501.t1 MTR_7g110720 40.741 270 131 9 157 415 133 384 4.02e-51 177
MS.gene98501.t1 MTR_4g132430 37.050 278 160 4 68 338 114 383 1.06e-48 173
MS.gene98501.t1 MTR_2g088000 35.627 407 179 15 66 408 167 554 1.28e-48 175
MS.gene98501.t1 MTR_4g132430 38.132 257 144 4 89 338 1 249 8.59e-47 165
MS.gene98501.t1 MTR_2g023930 32.506 403 199 11 68 411 143 531 6.36e-44 161
MS.gene98501.t1 MTR_4g049790 34.940 332 165 7 68 357 131 453 3.72e-43 159
MS.gene98501.t1 MTR_4g049760 54.430 158 65 3 182 338 261 412 2.21e-40 151
MS.gene98501.t1 MTR_4g094412 50.658 152 64 4 195 338 227 375 3.30e-37 142
MS.gene98501.t1 MTR_4g094412 50.658 152 64 4 195 338 218 366 3.67e-37 141
MS.gene98501.t1 MTR_4g107970 63.158 95 31 1 181 271 144 238 6.13e-37 142
MS.gene98501.t1 MTR_4g107970 63.158 95 31 1 181 271 221 315 1.10e-36 142
MS.gene98501.t1 MTR_7g009730 61.386 101 38 1 185 284 192 292 2.97e-36 140
MS.gene98501.t1 MTR_4g047580 37.165 261 137 8 166 408 239 490 2.79e-33 131
MS.gene98501.t1 MTR_4g007060 42.857 105 58 2 192 294 107 211 4.39e-24 101
MS.gene98501.t1 MTR_4g007060 42.857 105 58 2 192 294 141 245 6.82e-24 101
MS.gene98501.t1 MTR_5g074400 49.020 102 50 2 172 273 382 481 1.98e-23 103
MS.gene98501.t1 MTR_5g074400 46.667 60 30 2 212 271 244 301 9.12e-11 64.3
MS.gene98501.t1 MTR_2g105060 39.850 133 70 3 194 321 72 199 6.65e-23 97.4
MS.gene98501.t1 MTR_2g105060 39.850 133 70 3 194 321 147 274 1.44e-22 97.8
MS.gene98501.t1 MTR_7g109800 37.671 146 80 4 195 330 129 273 1.90e-22 97.1
MS.gene98501.t1 MTR_1g013790 48.235 85 42 2 209 291 99 183 3.41e-22 95.5
MS.gene98501.t1 MTR_3g106060 50.602 83 38 1 209 291 136 215 3.63e-22 96.3
MS.gene98501.t1 MTR_1g013760 50.685 73 36 0 196 268 125 197 6.82e-22 95.5
MS.gene98501.t1 MTR_5g094430 45.556 90 48 1 195 284 214 302 2.70e-21 95.5
MS.gene98501.t1 MTR_5g094430 45.556 90 48 1 195 284 236 324 2.71e-21 95.9
MS.gene98501.t1 MTR_3g009470 37.584 149 81 5 161 299 435 581 3.86e-21 96.7
MS.gene98501.t1 MTR_3g009470 39.362 94 54 3 183 275 251 342 1.25e-13 73.2
MS.gene98501.t1 MTR_5g094430 50.633 79 38 1 195 273 348 425 4.98e-21 95.9
MS.gene98501.t1 MTR_7g079010 35.088 171 85 6 116 281 58 207 6.46e-21 91.3
MS.gene98501.t1 MTR_7g100510 44.954 109 52 3 184 287 329 434 1.05e-20 94.4
MS.gene98501.t1 MTR_7g100510 42.308 78 43 2 212 289 190 265 3.87e-12 68.2
MS.gene98501.t1 MTR_3g031220 51.282 78 37 1 194 271 348 424 1.14e-20 94.7
MS.gene98501.t1 MTR_5g044695 65.517 58 19 1 183 239 48 105 1.61e-20 86.7
MS.gene98501.t1 MTR_3g056100 50.633 79 38 1 195 273 242 319 1.69e-20 93.6
MS.gene98501.t1 MTR_3g056100 50.633 79 38 1 195 273 255 332 1.70e-20 93.6
MS.gene98501.t1 MTR_3g056100 50.633 79 38 1 195 273 386 463 1.94e-20 94.0
MS.gene98501.t1 MTR_3g056100 50.633 79 38 1 195 273 399 476 2.05e-20 94.0
MS.gene98501.t1 MTR_4g013260 50.000 82 37 2 193 271 315 395 4.07e-20 92.8
MS.gene98501.t1 MTR_4g013260 44.118 68 37 1 212 279 185 251 3.87e-12 68.2
MS.gene98501.t1 MTR_7g011820 47.674 86 44 1 198 283 397 481 7.67e-20 92.0
MS.gene98501.t1 MTR_7g011820 48.333 60 29 2 212 271 229 286 1.51e-11 66.6
MS.gene98501.t1 MTR_4g082580 45.977 87 46 1 196 282 263 348 8.27e-20 90.9
MS.gene98501.t1 MTR_7g080020 48.148 81 41 1 193 273 475 554 1.09e-19 92.0
MS.gene98501.t1 MTR_7g080000 36.641 131 70 2 193 311 414 543 1.33e-19 91.7
MS.gene98501.t1 MTR_5g042920 45.161 93 47 2 198 287 307 398 2.08e-19 90.1
MS.gene98501.t1 MTR_5g042920 50.000 60 28 2 212 271 152 209 6.63e-12 67.4
MS.gene98501.t1 MTR_3g095040 51.351 74 35 1 198 271 105 177 2.30e-19 86.3
MS.gene98501.t1 MTR_4g122530 47.674 86 43 2 195 280 192 275 2.57e-19 89.7
MS.gene98501.t1 MTR_6g038890 65.517 58 19 1 183 239 159 216 2.66e-19 86.7
MS.gene98501.t1 MTR_2g024350 49.296 71 36 0 212 282 9 79 4.48e-19 86.3
MS.gene98501.t1 MTR_2g033820 45.122 82 44 1 195 276 187 267 6.12e-19 88.6
MS.gene98501.t1 MTR_5g097490 40.708 113 61 3 182 290 223 333 8.79e-19 88.2
MS.gene98501.t1 MTR_7g028415 45.263 95 47 2 178 268 56 149 8.91e-19 84.0
MS.gene98501.t1 MTR_7g028710 45.263 95 47 2 178 268 56 149 8.91e-19 84.0
MS.gene98501.t1 MTR_5g091390 34.711 121 75 2 158 275 101 220 1.60e-18 86.3
MS.gene98501.t1 MTR_1g086790 44.444 81 44 1 195 275 142 221 1.61e-18 86.3
MS.gene98501.t1 MTR_7g071120 39.844 128 69 5 198 319 311 436 2.19e-18 87.4
MS.gene98501.t1 MTR_4g094588 35.252 139 70 4 198 323 165 296 2.33e-18 86.3
MS.gene98501.t1 MTR_8g092010 47.297 74 38 1 198 271 95 167 3.12e-18 82.4
MS.gene98501.t1 MTR_2g024380 35.433 127 76 1 162 282 196 322 4.25e-18 86.7
MS.gene98501.t1 MTR_2g016770 55.738 61 27 0 212 272 36 96 6.12e-18 82.4
MS.gene98501.t1 MTR_1g015140 49.315 73 36 1 196 268 87 158 6.25e-18 81.3
MS.gene98501.t1 MTR_2g016770 55.738 61 27 0 212 272 28 88 7.05e-18 82.4
MS.gene98501.t1 MTR_4g094908 54.839 62 28 0 212 273 267 328 1.02e-17 84.3
MS.gene98501.t1 MTR_3g104750 39.560 91 54 1 178 268 71 160 1.82e-17 79.7
MS.gene98501.t1 MTR_8g096730 36.893 103 61 2 181 280 37 138 3.36e-17 78.6
MS.gene98501.t1 MTR_8g087000 56.667 60 26 0 212 271 78 137 4.62e-17 80.9
MS.gene98501.t1 MTR_8g087000 56.667 60 26 0 212 271 77 136 4.76e-17 80.9
MS.gene98501.t1 MTR_5g016610 41.837 98 48 1 182 270 161 258 5.93e-17 80.9
MS.gene98501.t1 MTR_4g130900 44.156 77 42 1 195 271 343 418 8.83e-17 82.8
MS.gene98501.t1 MTR_5g043880 42.683 82 46 1 188 269 101 181 9.60e-17 80.5
MS.gene98501.t1 MTR_1g077780 44.156 77 42 1 195 271 46 121 1.09e-16 77.0
MS.gene98501.t1 MTR_7g109600 50.725 69 34 0 212 280 54 122 1.17e-16 80.1
MS.gene98501.t1 MTR_1g070455 52.459 61 29 0 212 272 294 354 1.33e-16 81.3
MS.gene98501.t1 MTR_1g009613 52.542 59 28 0 212 270 263 321 5.89e-16 79.0
MS.gene98501.t1 MTR_2g083870 55.000 60 27 0 212 271 81 140 7.27e-16 77.4
MS.gene98501.t1 MTR_8g007270 45.882 85 41 2 188 268 127 210 1.01e-15 76.6
MS.gene98501.t1 MTR_2g032030 39.394 99 59 1 186 283 241 339 1.49e-15 79.0
MS.gene98501.t1 MTR_1g099600 43.678 87 49 0 211 297 185 271 1.60e-15 77.4
MS.gene98501.t1 MTR_3g095080 41.053 95 53 2 195 289 128 219 1.84e-15 75.5
MS.gene98501.t1 MTR_2g032030 39.394 99 59 1 186 283 241 339 1.93e-15 78.2
MS.gene98501.t1 MTR_8g028565 51.429 70 34 0 212 281 156 225 2.41e-15 77.0
MS.gene98501.t1 MTR_3g095080 40.625 96 54 2 194 289 151 243 2.45e-15 75.9
MS.gene98501.t1 MTR_8g098945 42.353 85 47 1 210 294 128 210 8.89e-15 74.7
MS.gene98501.t1 MTR_7g079040 50.000 70 35 0 212 281 155 224 1.51e-14 74.7
MS.gene98501.t1 MTR_0117s0040 49.153 59 30 0 211 269 74 132 1.95e-14 73.2
MS.gene98501.t1 MTR_4g127040 52.632 57 27 0 212 268 246 302 2.30e-14 73.9
MS.gene98501.t1 MTR_8g092140 48.438 64 32 1 205 268 154 216 1.02e-13 70.9
MS.gene98501.t1 MTR_3g009470 39.362 94 54 3 183 275 251 342 1.23e-13 73.2
MS.gene98501.t1 MTR_3g108960 39.744 78 47 0 195 272 298 375 1.47e-13 72.4
MS.gene98501.t1 MTR_1g078260 28.272 191 127 5 79 268 123 304 1.49e-13 72.8
MS.gene98501.t1 MTR_6g086555 52.308 65 29 2 212 275 207 270 5.41e-13 70.5
MS.gene98501.t1 MTR_4g007060 44.444 63 35 0 186 248 137 199 5.50e-13 68.9
MS.gene98501.t1 MTR_7g062220 52.632 57 26 1 212 268 125 180 9.06e-13 69.3
MS.gene98501.t1 MTR_8g069935 41.667 60 35 0 212 271 332 391 3.34e-12 68.6
MS.gene98501.t1 MTR_6g053200 41.667 60 35 0 212 271 331 390 3.65e-12 68.6
MS.gene98501.t1 MTR_3g031220 47.059 68 29 3 212 279 199 259 4.53e-12 67.8
MS.gene98501.t1 MTR_8g067650 45.000 60 33 0 212 271 340 399 5.08e-12 68.2
MS.gene98501.t1 MTR_8g067635 45.000 60 33 0 212 271 350 409 8.04e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98501.t1 AT4G04450 37.942 311 143 7 70 338 20 322 6.90e-53 183
MS.gene98501.t1 AT4G04450 37.942 311 143 7 70 338 114 416 7.34e-52 182
MS.gene98501.t1 AT1G62300 36.318 402 173 17 74 411 158 540 1.58e-49 176
MS.gene98501.t1 AT4G01720 34.324 370 192 9 66 406 96 443 5.34e-46 166
MS.gene98501.t1 AT4G22070 35.494 324 153 9 66 341 108 423 3.72e-43 159
MS.gene98501.t1 AT4G22070 35.494 324 153 9 66 341 108 423 3.72e-43 159
MS.gene98501.t1 AT4G22070 35.494 324 153 9 66 341 108 423 3.72e-43 159
MS.gene98501.t1 AT4G22070 35.494 324 153 9 66 341 108 423 3.72e-43 159
MS.gene98501.t1 AT5G15130 35.030 334 142 10 68 340 35 354 8.40e-42 155
MS.gene98501.t1 AT5G15130 51.534 163 63 4 187 340 157 312 1.67e-41 154
MS.gene98501.t1 AT1G68150 64.815 108 37 1 189 296 213 319 5.63e-41 149
MS.gene98501.t1 AT1G18860 33.524 349 159 10 68 343 41 389 3.05e-37 142
MS.gene98501.t1 AT1G69810 45.513 156 72 3 187 340 179 323 1.18e-32 127
MS.gene98501.t1 AT1G69810 44.172 163 78 3 180 340 114 265 1.27e-32 126
MS.gene98501.t1 AT5G07100 39.130 138 73 4 146 280 81 210 2.03e-25 103
MS.gene98501.t1 AT5G07100 39.130 138 73 4 146 280 81 210 2.03e-25 103
MS.gene98501.t1 AT5G07100 39.130 138 73 4 146 280 81 210 2.03e-25 103
MS.gene98501.t1 AT5G07100 39.130 138 73 4 146 280 81 210 2.03e-25 103
MS.gene98501.t1 AT5G07100 38.571 140 75 4 144 280 172 303 3.11e-25 105
MS.gene98501.t1 AT1G80840 31.658 199 106 6 75 271 36 206 2.35e-22 97.1
MS.gene98501.t1 AT2G38470 42.857 119 64 3 156 273 308 423 6.25e-22 98.6
MS.gene98501.t1 AT2G38470 48.333 60 29 2 212 271 185 242 5.27e-11 65.1
MS.gene98501.t1 AT4G31800 56.000 75 32 1 205 278 104 178 6.32e-22 94.7
MS.gene98501.t1 AT4G31800 56.000 75 32 1 205 278 169 243 6.52e-22 95.9
MS.gene98501.t1 AT2G47260 48.810 84 42 1 195 278 158 240 1.23e-21 95.9
MS.gene98501.t1 AT1G29860 48.148 81 41 1 195 275 120 199 2.00e-21 94.0
MS.gene98501.t1 AT5G41570 48.352 91 42 2 182 268 65 154 2.41e-21 91.3
MS.gene98501.t1 AT2G30250 47.826 92 45 2 186 275 301 391 3.75e-21 95.1
MS.gene98501.t1 AT2G04880 49.351 77 38 1 197 273 269 344 5.35e-21 95.5
MS.gene98501.t1 AT2G25000 55.556 72 31 1 204 274 95 166 5.84e-21 91.7
MS.gene98501.t1 AT2G25000 55.556 72 31 1 204 274 95 166 5.84e-21 91.7
MS.gene98501.t1 AT2G04880 49.351 77 38 1 197 273 293 368 6.89e-21 95.1
MS.gene98501.t1 AT2G25000 55.556 72 31 1 204 274 117 188 9.30e-21 91.7
MS.gene98501.t1 AT4G18170 45.714 105 51 4 169 271 131 231 1.02e-20 92.8
MS.gene98501.t1 AT2G25000 55.556 72 31 1 204 274 138 209 1.15e-20 91.7
MS.gene98501.t1 AT1G64000 51.190 84 37 2 198 281 101 180 2.81e-20 88.6
MS.gene98501.t1 AT5G56270 48.864 88 44 1 186 273 462 548 4.76e-20 93.2
MS.gene98501.t1 AT4G26640 49.351 77 38 1 195 271 189 264 5.03e-20 91.7
MS.gene98501.t1 AT4G26640 49.351 77 38 1 195 271 189 264 5.03e-20 91.7
MS.gene98501.t1 AT4G26640 49.351 77 38 1 195 271 189 264 5.03e-20 91.7
MS.gene98501.t1 AT4G26640 49.351 77 38 1 195 271 189 264 5.03e-20 91.7
MS.gene98501.t1 AT4G26640 48.718 78 39 1 194 271 324 400 8.60e-20 92.0
MS.gene98501.t1 AT4G26640 49.351 77 38 1 195 271 293 368 9.34e-20 91.7
MS.gene98501.t1 AT4G26640 49.351 77 38 1 195 271 365 440 1.06e-19 92.0
MS.gene98501.t1 AT5G26170 52.778 72 33 1 197 268 99 169 1.45e-19 86.3
MS.gene98501.t1 AT1G13960 50.000 74 36 1 198 271 243 315 1.82e-19 89.7
MS.gene98501.t1 AT1G13960 50.000 60 28 2 212 271 77 134 1.25e-11 66.2
MS.gene98501.t1 AT1G13960 50.000 74 36 1 198 271 396 468 2.69e-19 90.5
MS.gene98501.t1 AT1G13960 50.000 60 28 2 212 271 230 287 9.53e-12 67.4
MS.gene98501.t1 AT3G62340 44.037 109 55 2 198 301 105 212 3.96e-19 87.4
MS.gene98501.t1 AT5G64810 48.276 87 41 2 183 269 85 167 4.15e-19 85.5
MS.gene98501.t1 AT2G46130 45.263 95 48 2 187 281 6 96 4.88e-19 82.8
MS.gene98501.t1 AT2G03340 48.684 76 38 1 198 273 402 476 4.90e-19 89.7
MS.gene98501.t1 AT2G03340 51.667 60 27 2 212 271 251 308 8.72e-13 70.5
MS.gene98501.t1 AT5G13080 48.193 83 39 2 198 280 54 132 4.93e-19 84.0
MS.gene98501.t1 AT5G46350 41.667 96 54 2 198 293 170 263 4.98e-19 87.8
MS.gene98501.t1 AT5G49520 45.161 93 49 2 195 286 205 296 5.01e-19 89.0
MS.gene98501.t1 AT3G01970 50.000 74 36 1 197 270 51 123 1.24e-18 82.8
MS.gene98501.t1 AT3G01080 48.649 74 37 1 198 271 293 365 1.55e-18 87.8
MS.gene98501.t1 AT3G01080 48.649 74 37 1 198 271 331 403 1.78e-18 87.8
MS.gene98501.t1 AT1G69310 45.238 84 45 1 186 269 122 204 2.25e-18 85.5
MS.gene98501.t1 AT1G69310 45.238 84 45 1 186 269 122 204 2.25e-18 85.5
MS.gene98501.t1 AT1G69310 45.238 84 45 1 186 269 122 204 2.25e-18 85.5
MS.gene98501.t1 AT4G26440 34.459 148 83 5 161 295 311 457 3.23e-18 87.4
MS.gene98501.t1 AT4G30935 38.136 118 67 3 182 295 303 418 6.37e-18 86.3
MS.gene98501.t1 AT2G37260 39.695 131 59 6 157 274 211 334 1.52e-17 84.0
MS.gene98501.t1 AT2G37260 44.156 77 39 3 211 287 85 157 3.02e-13 71.2
MS.gene98501.t1 AT2G37260 39.695 131 59 6 157 274 209 332 1.63e-17 84.0
MS.gene98501.t1 AT2G37260 44.156 77 39 3 211 287 83 155 3.09e-13 70.9
MS.gene98501.t1 AT2G23320 57.627 59 25 0 212 270 241 299 2.67e-17 82.8
MS.gene98501.t1 AT2G37260 41.221 131 57 7 157 274 291 414 2.75e-17 84.0
MS.gene98501.t1 AT2G37260 44.156 77 39 3 211 287 165 237 4.20e-13 71.2
MS.gene98501.t1 AT2G30590 54.688 64 28 1 212 274 314 377 7.08e-17 82.4
MS.gene98501.t1 AT5G28650 57.895 57 24 0 212 268 263 319 7.32e-17 81.6
MS.gene98501.t1 AT3G04670 57.895 57 24 0 212 268 263 319 1.16e-16 81.3
MS.gene98501.t1 AT4G24240 55.932 59 26 0 212 270 282 340 2.33e-16 80.5
MS.gene98501.t1 AT1G55600 42.697 89 46 2 189 273 281 368 3.02e-16 80.9
MS.gene98501.t1 AT1G29280 45.882 85 38 1 202 286 65 141 3.55e-16 78.6
MS.gene98501.t1 AT4G31550 44.872 78 40 1 212 289 247 321 4.03e-16 79.3
MS.gene98501.t1 AT2G44745 43.956 91 46 2 182 268 112 201 4.30e-16 77.4
MS.gene98501.t1 AT4G31550 44.872 78 40 1 212 289 246 320 4.42e-16 79.3
MS.gene98501.t1 AT2G24570 53.448 58 27 0 212 269 244 301 1.02e-15 78.2
MS.gene98501.t1 AT1G30650 43.529 85 47 1 188 271 193 277 1.57e-15 78.6
MS.gene98501.t1 AT2G34830 43.529 85 47 1 188 271 191 275 1.71e-15 78.6
MS.gene98501.t1 AT4G01250 48.649 74 38 0 208 281 125 198 1.90e-15 77.0
MS.gene98501.t1 AT2G34830 43.529 85 47 1 188 271 200 284 2.27e-15 78.2
MS.gene98501.t1 AT4G23550 43.373 83 47 0 209 291 138 220 2.95e-15 76.6
MS.gene98501.t1 AT3G58710 55.000 60 27 0 212 271 72 131 4.09e-15 75.5
MS.gene98501.t1 AT3G58710 55.000 60 27 0 212 271 71 130 4.56e-15 75.5
MS.gene98501.t1 AT5G52830 50.000 70 35 0 212 281 166 235 1.38e-14 75.1
MS.gene98501.t1 AT2G46130 42.105 95 47 3 187 281 6 92 3.46e-14 68.9
MS.gene98501.t1 AT4G39410 40.000 85 50 1 184 268 196 279 5.57e-14 72.8
MS.gene98501.t1 AT5G45050 36.842 114 69 1 212 322 1042 1155 1.38e-13 73.6
MS.gene98501.t1 AT1G69310 41.667 84 44 2 186 269 122 200 1.44e-13 71.2
MS.gene98501.t1 AT5G45050 36.842 114 69 1 212 322 1181 1294 1.46e-13 73.6
MS.gene98501.t1 AT5G45050 36.842 114 69 1 212 322 1153 1266 1.50e-13 73.6
MS.gene98501.t1 AT5G43290 47.541 61 31 1 212 272 115 174 3.08e-12 67.0
MS.gene98501.t1 AT4G31800 62.222 45 16 1 205 248 169 213 4.18e-12 66.2
MS.gene98501.t1 AT2G21900 46.667 60 31 1 212 271 110 168 4.94e-12 65.5
MS.gene98501.t1 AT2G46400 36.000 100 62 1 190 287 83 182 3.54e-11 64.3
MS.gene98501.t1 AT2G40740 43.902 82 35 3 212 282 174 255 4.03e-11 63.9
MS.gene98501.t1 AT2G40740 43.902 82 35 3 212 282 183 264 5.04e-11 63.9

Find 95 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCATTGTTTATCATATT+TGG 0.055350 2.1:-45277176 None:intergenic
CACTACTCTTACTAGGTAAT+TGG 0.189983 2.1:-45277322 None:intergenic
ATTAATCACTTACTTGGATT+TGG 0.221328 2.1:-45274011 None:intergenic
TTAATCACTTACTTGGATTT+GGG 0.256367 2.1:-45274010 None:intergenic
TCTTCAGAATCGTTTACTTT+TGG 0.317553 2.1:+45274328 MS.gene98501:CDS
AGCCTACTATCGTTGCAGTA+TGG 0.326812 2.1:+45275310 MS.gene98501:CDS
GGGGATTTCCTTGAATTTGA+TGG 0.332291 2.1:-45273990 None:intergenic
AAAATCTGATCGTGCCCTTA+TGG 0.343745 2.1:-45275072 None:intergenic
GGGTGTCAATGGAGAAAATA+TGG 0.346609 2.1:+45275254 MS.gene98501:CDS
TAGTTTACCTGCTTACGAAC+TGG 0.359165 2.1:-45275344 None:intergenic
TCTTTATTGTTATTATCATA+TGG 0.359665 2.1:-45273496 None:intergenic
GAAGTTGTGTTGTGTTATTA+AGG 0.369494 2.1:-45273966 None:intergenic
GATGATGTTAGGTTTGCTAT+TGG 0.371407 2.1:-45276888 None:intergenic
TCTTACTAGGTAATTGGCTT+TGG 0.372010 2.1:-45277316 None:intergenic
TTTGAGTTTGGTGGAGATAA+TGG 0.378048 2.1:-45276996 None:intergenic
AATTAACCACTACTCTTACT+AGG 0.379801 2.1:-45277329 None:intergenic
GTAGCTATAACATTTGAGTT+TGG 0.383227 2.1:-45277008 None:intergenic
TCAACAAATCTACAACAATA+TGG 0.389536 2.1:+45276939 MS.gene98501:CDS
TTTAAGAGGTATGCTAAATC+TGG 0.393699 2.1:+45274286 MS.gene98501:CDS
ATGATTATGGCTCCCTTCAT+AGG 0.402020 2.1:-45276844 None:intergenic
CAATGAGAGAAAACTTGCTT+TGG 0.409723 2.1:+45277190 MS.gene98501:CDS
TGTTGAGTGCTGATGATGTT+AGG 0.413129 2.1:-45276899 None:intergenic
AGTTCAAACAATGAAATTGC+TGG 0.417191 2.1:+45273456 MS.gene98501:CDS
CGATAGTAGGCTCGTGGACA+AGG 0.430122 2.1:-45275299 None:intergenic
GTAAAATCAAGTGTAATTGT+AGG 0.435039 2.1:-45277053 None:intergenic
TGTAATGTTTAGATGGTTGA+TGG 0.440145 2.1:+45275233 MS.gene98501:intron
GGAGAGCTAGAGTGTCCATA+AGG 0.442520 2.1:+45275057 MS.gene98501:CDS
GGGATTTCCTTGAATTTGAT+GGG 0.451310 2.1:-45273989 None:intergenic
GCTATAACATTTGAGTTTGG+TGG 0.456982 2.1:-45277005 None:intergenic
AAATAATGGATTTGCCATAG+TGG 0.457421 2.1:+45274932 MS.gene98501:CDS
TTGAATTGTAAATAGTTACT+TGG 0.461039 2.1:-45277083 None:intergenic
CTGGTGGAAGTTGATGATTA+TGG 0.462621 2.1:-45276857 None:intergenic
TGAAATAAATAGCAAAATAG+AGG 0.463782 2.1:+45275010 MS.gene98501:CDS
AAGGAGAATGAAAATTTAAG+AGG 0.466438 2.1:+45274272 MS.gene98501:CDS
TAATGACCTTGGAATGGAAA+AGG 0.467036 2.1:-45277131 None:intergenic
CAACTTCCCCATCAAATTCA+AGG 0.467550 2.1:+45273982 MS.gene98501:CDS
AGATGGTTGATGGGTGTCAA+TGG 0.469133 2.1:+45275243 MS.gene98501:intron
GCCTACTATCGTTGCAGTAT+GGG 0.470435 2.1:+45275311 MS.gene98501:CDS
TGCACCCAACCTCAGATGAT+TGG 0.470879 2.1:-45275034 None:intergenic
ACAGGTGCAAAGGTGTTTCA+AGG 0.472939 2.1:+45276800 MS.gene98501:intron
GCCATGTCCTCGTTCACAAA+TGG 0.479556 2.1:+45277272 MS.gene98501:CDS
AGTATTCTTATGAAAGGAAG+AGG 0.492624 2.1:-45273542 None:intergenic
TTTGGAAACACCTCAAATGA+TGG 0.495575 2.1:-45277158 None:intergenic
AGTTTACCTGCTTACGAACT+GGG 0.502879 2.1:-45275343 None:intergenic
CCCCATACTGCAACGATAGT+AGG 0.503349 2.1:-45275312 None:intergenic
GAAGCTTGATGAAGCAAAGA+AGG 0.508309 2.1:+45274253 MS.gene98501:CDS
AGGACCAATCATCTGAGGTT+GGG 0.511884 2.1:+45275030 MS.gene98501:CDS
GAGAGCTAGAGTGTCCATAA+GGG 0.513998 2.1:+45275058 MS.gene98501:CDS
TTCATGCCCAGTTCGTAAGC+AGG 0.514284 2.1:+45275337 MS.gene98501:CDS
CTTAATAAAAGAGTAGATCC+TGG 0.516100 2.1:-45273937 None:intergenic
GTGTTCATCACAACCTATGA+AGG 0.519912 2.1:+45276831 MS.gene98501:CDS
TAAAATCAAGTGTAATTGTA+GGG 0.521053 2.1:-45277052 None:intergenic
AAATAATCACAACTTGCTGC+TGG 0.523498 2.1:+45274385 MS.gene98501:CDS
GAGGACCAATCATCTGAGGT+TGG 0.528239 2.1:+45275029 MS.gene98501:CDS
TCGTGGACAAGGGTTGCCCT+TGG 0.531338 2.1:-45275288 None:intergenic
ATTGTAGGGCATGTTGGAGA+TGG 0.532259 2.1:-45277038 None:intergenic
AGTGTAATTGTAGGGCATGT+TGG 0.533130 2.1:-45277044 None:intergenic
AATCATCTGAGGTTGGGTGC+AGG 0.533609 2.1:+45275036 MS.gene98501:CDS
AATTGTAAATAGTTACTTGG+AGG 0.535746 2.1:-45277080 None:intergenic
TTGCTACAATCTGAAGGTGA+AGG 0.539687 2.1:-45274909 None:intergenic
GAGATAATGGTGAAGAGAAG+AGG 0.540861 2.1:-45276983 None:intergenic
TCATTACCCTCCATCATTTG+AGG 0.541576 2.1:+45277148 MS.gene98501:CDS
ATGATGGAGGGTAATGACCT+TGG 0.552017 2.1:-45277142 None:intergenic
TCCATTTGTGAACGAGGACA+TGG 0.553076 2.1:-45277273 None:intergenic
ATTGTAAATAGTTACTTGGA+GGG 0.553408 2.1:-45277079 None:intergenic
ACTTACAGTATTCTTATGAA+AGG 0.561472 2.1:-45273548 None:intergenic
GTAATGTTTAGATGGTTGAT+GGG 0.564516 2.1:+45275234 MS.gene98501:intron
TGTAGATTTGTTGATGAGGT+AGG 0.565582 2.1:-45276930 None:intergenic
GATTTGTTGATGAGGTAGGA+AGG 0.569280 2.1:-45276926 None:intergenic
AACTGACGAGTAGGTAACAC+TGG 0.572998 2.1:-45274876 None:intergenic
ATTGCAATTAACAGGTGCAA+AGG 0.574633 2.1:+45276790 MS.gene98501:intron
AATGACCTTGGAATGGAAAA+GGG 0.575264 2.1:-45277130 None:intergenic
TAATCACTTACTTGGATTTG+GGG 0.580090 2.1:-45274009 None:intergenic
AATAATGCTTCCTTGAGAGA+AGG 0.583998 2.1:-45277245 None:intergenic
CCTACTATCGTTGCAGTATG+GGG 0.587972 2.1:+45275312 MS.gene98501:CDS
TTATTGTTATTATCATATGG+TGG 0.589100 2.1:-45273493 None:intergenic
GGAAACACCTCAAATGATGG+AGG 0.600501 2.1:-45277155 None:intergenic
GGAGGGTAATGACCTTGGAA+TGG 0.607233 2.1:-45277137 None:intergenic
GAAGGGAAATACACAAGATG+CGG 0.615352 2.1:+45274848 MS.gene98501:intron
TCATCAAAGAACTGACGAGT+AGG 0.619422 2.1:-45274885 None:intergenic
TATGGACAAAAGACAGCCAA+GGG 0.623915 2.1:+45275272 MS.gene98501:CDS
ATATGGACAAAAGACAGCCA+AGG 0.629423 2.1:+45275271 MS.gene98501:CDS
GCATGTGAGTACATTAATGA+AGG 0.632412 2.1:+45274987 MS.gene98501:CDS
GAAACACCTCAAATGATGGA+GGG 0.632932 2.1:-45277154 None:intergenic
CTGCAACGATAGTAGGCTCG+TGG 0.637106 2.1:-45275305 None:intergenic
CAATTACCTAGTAAGAGTAG+TGG 0.638666 2.1:+45277323 MS.gene98501:CDS
GATAGTAGGCTCGTGGACAA+GGG 0.644110 2.1:-45275298 None:intergenic
GGAAAACAATGAAAACAACA+TGG 0.645971 2.1:+45274953 MS.gene98501:CDS
TGTTCATCACAACCTATGAA+GGG 0.646804 2.1:+45276832 MS.gene98501:CDS
GGATTTCCTTGAATTTGATG+GGG 0.651214 2.1:-45273988 None:intergenic
AATAGAGGACCAATCATCTG+AGG 0.655874 2.1:+45275025 MS.gene98501:CDS
AGAATCTCCATTTGTGAACG+AGG 0.664014 2.1:-45277279 None:intergenic
GAAAACAATGAAAACAACAT+GGG 0.672904 2.1:+45274954 MS.gene98501:CDS
TTGTTGTAGATTTGTTGATG+AGG 0.675654 2.1:-45276934 None:intergenic
AATTGCTGGAAGTTGATGAA+AGG 0.676322 2.1:+45273470 MS.gene98501:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTATTTTTTATTTTTTT+GGG - chr2.1:45274591-45274610 None:intergenic 0.0%
!!! TTAATTATTTTTTATTTTTT+TGG - chr2.1:45274592-45274611 None:intergenic 0.0%
!! TAATAATCAAATATCAAATA+TGG - chr2.1:45273612-45273631 None:intergenic 10.0%
!!! AATAACATTTTTTAGAATTT+AGG - chr2.1:45275535-45275554 None:intergenic 10.0%
!!! GATAAATTAAACTTTAATTT+TGG + chr2.1:45274717-45274736 MS.gene98501:intron 10.0%
!!! TTTTATATGTATAATAGAAA+TGG + chr2.1:45275717-45275736 MS.gene98501:intron 10.0%
!! CAAAATATAAGAATTTCAAT+TGG + chr2.1:45275487-45275506 MS.gene98501:intron 15.0%
!! TTAAATTTCTATCAAAGATA+TGG + chr2.1:45275952-45275971 MS.gene98501:intron 15.0%
!! TTCTTCATAATTAATTAGAA+GGG + chr2.1:45274831-45274850 MS.gene98501:intron 15.0%
!! TTTCTTCATAATTAATTAGA+AGG + chr2.1:45274830-45274849 MS.gene98501:intron 15.0%
!!! AAAAGTTTTTGTAATGTAAT+TGG - chr2.1:45275899-45275918 None:intergenic 15.0%
!!! AATTTTAATGCATTGAAAAA+GGG + chr2.1:45275840-45275859 MS.gene98501:intron 15.0%
!!! ATCTATTTTCAAATATTGTA+AGG + chr2.1:45276246-45276265 MS.gene98501:intron 15.0%
!!! ATTAATTTGTAATGTTTAGA+TGG + chr2.1:45275226-45275245 MS.gene98501:intron 15.0%
!!! ATTTTCAAATATTTCGAAAA+TGG + chr2.1:45276218-45276237 MS.gene98501:intron 15.0%
!!! ATTTTTGTTTTTTATGTTTG+TGG + chr2.1:45275569-45275588 MS.gene98501:intron 15.0%
!!! TCTATTTTCAAATATTGTAA+GGG + chr2.1:45276247-45276266 MS.gene98501:intron 15.0%
!!! TCTTTATTGTTATTATCATA+TGG - chr2.1:45273499-45273518 None:intergenic 15.0%
!!! TTAAACTTTAATTTTGGATT+TGG + chr2.1:45274723-45274742 MS.gene98501:intron 15.0%
!!! TTTTCAAATATTTCGAAAAT+GGG + chr2.1:45276219-45276238 MS.gene98501:intron 15.0%
!! AAAATTCAAGAACTAACTAT+TGG - chr2.1:45276507-45276526 None:intergenic 20.0%
!! AAGTATATGACTCTTTATAA+AGG - chr2.1:45273698-45273717 None:intergenic 20.0%
!! AATAAGATTAATCACTTACT+TGG - chr2.1:45274020-45274039 None:intergenic 20.0%
!! ATTTAATGATCTCATGTATT+TGG + chr2.1:45274489-45274508 MS.gene98501:intron 20.0%
!! TAAAATCAAGTGTAATTGTA+GGG - chr2.1:45277055-45277074 None:intergenic 20.0%
!! TAACCGAACAATAAATAAAA+TGG + chr2.1:45276102-45276121 MS.gene98501:intron 20.0%
!! TGAAATAAATAGCAAAATAG+AGG + chr2.1:45275010-45275029 MS.gene98501:CDS 20.0%
!! TTAAGGATCAAATTATTGTT+GGG + chr2.1:45276691-45276710 MS.gene98501:intron 20.0%
!! TTAATTACATTGCAATTAAC+AGG + chr2.1:45276782-45276801 MS.gene98501:intron 20.0%
!! TTGAATTGTAAATAGTTACT+TGG - chr2.1:45277086-45277105 None:intergenic 20.0%
!! TTTAAGGATCAAATTATTGT+TGG + chr2.1:45276690-45276709 MS.gene98501:intron 20.0%
!! TTTATCTATTTGTAACTAGA+CGG - chr2.1:45274568-45274587 None:intergenic 20.0%
!! TTTCAAATATTTCGAAAATG+GGG + chr2.1:45276220-45276239 MS.gene98501:intron 20.0%
!!! AATTCTCATTTCATTCTTTT+AGG - chr2.1:45276448-45276467 None:intergenic 20.0%
!!! ACATTTTTTAGAATTTAGGT+TGG - chr2.1:45275531-45275550 None:intergenic 20.0%
!!! ATAATGATGAGACTATTTTA+AGG + chr2.1:45276674-45276693 MS.gene98501:intron 20.0%
!!! ATTTTAATGCATTGAAAAAG+GGG + chr2.1:45275841-45275860 MS.gene98501:intron 20.0%
!!! CAATTTTAATGCATTGAAAA+AGG + chr2.1:45275839-45275858 MS.gene98501:intron 20.0%
!!! CATTTTTTAGAATTTAGGTT+GGG - chr2.1:45275530-45275549 None:intergenic 20.0%
!!! GTTCCATTTTATTTATTGTT+CGG - chr2.1:45276108-45276127 None:intergenic 20.0%
!!! TAATAACTTGACATTTTGAT+GGG + chr2.1:45273902-45273921 MS.gene98501:intron 20.0%
!!! TGTTGTTTATGTAATTAACA+TGG + chr2.1:45274643-45274662 MS.gene98501:intron 20.0%
!!! TTACAAGTTGAAAATATCAT+AGG - chr2.1:45274776-45274795 None:intergenic 20.0%
!!! TTATTGTTATTATCATATGG+TGG - chr2.1:45273496-45273515 None:intergenic 20.0%
!!! TTCAATTGATAATATATGCA+AGG + chr2.1:45276014-45276033 MS.gene98501:intron 20.0%
! AAAGTCATGAATACATCATA+AGG + chr2.1:45276650-45276669 MS.gene98501:intron 25.0%
! AAATGAGTGTGAATCAAATA+AGG - chr2.1:45274442-45274461 None:intergenic 25.0%
! AAATGTCAAGTTATTAGGTT+AGG - chr2.1:45273898-45273917 None:intergenic 25.0%
! AAGGAGAATGAAAATTTAAG+AGG + chr2.1:45274272-45274291 MS.gene98501:CDS 25.0%
! AATTGTAAATAGTTACTTGG+AGG - chr2.1:45277083-45277102 None:intergenic 25.0%
! ACTTACAGTATTCTTATGAA+AGG - chr2.1:45273551-45273570 None:intergenic 25.0%
! ATGTAATGAATGTTTGTGAA+AGG + chr2.1:45276132-45276151 MS.gene98501:intron 25.0%
! ATTAATCACTTACTTGGATT+TGG - chr2.1:45274014-45274033 None:intergenic 25.0%
! ATTATAAGGAAGATGATGAT+GGG + chr2.1:45276378-45276397 MS.gene98501:intron 25.0%
! ATTGTAAATAGTTACTTGGA+GGG - chr2.1:45277082-45277101 None:intergenic 25.0%
! CATCAAAATGTCAAGTTATT+AGG - chr2.1:45273903-45273922 None:intergenic 25.0%
! CTCTCATTGTTTATCATATT+TGG - chr2.1:45277179-45277198 None:intergenic 25.0%
! GAAAACAATGAAAACAACAT+GGG + chr2.1:45274954-45274973 MS.gene98501:CDS 25.0%
! GTAAAATCAAGTGTAATTGT+AGG - chr2.1:45277056-45277075 None:intergenic 25.0%
! TAGCTTATGATGAAAATCAT+GGG + chr2.1:45273813-45273832 MS.gene98501:intron 25.0%
! TAGGTCATATCATATCAAAA+TGG - chr2.1:45275392-45275411 None:intergenic 25.0%
! TCAACAAATCTACAACAATA+TGG + chr2.1:45276939-45276958 MS.gene98501:CDS 25.0%
! TCAGATTGTAGCAAAAATAA+TGG + chr2.1:45274918-45274937 MS.gene98501:CDS 25.0%
! TTAATCACTTACTTGGATTT+GGG - chr2.1:45274013-45274032 None:intergenic 25.0%
! TTAGCTTATGATGAAAATCA+TGG + chr2.1:45273812-45273831 MS.gene98501:intron 25.0%
! TTATCTATTTGTAACTAGAC+GGG - chr2.1:45274567-45274586 None:intergenic 25.0%
! TTCCTTATAATGCTAATTAG+TGG - chr2.1:45276369-45276388 None:intergenic 25.0%
! TTGAAAATATTAAGACGTGT+TGG - chr2.1:45274515-45274534 None:intergenic 25.0%
!! AAGAGTCATATACTTTGTTT+AGG + chr2.1:45273703-45273722 MS.gene98501:intron 25.0%
!! CTAATAACTTGACATTTTGA+TGG + chr2.1:45273901-45273920 MS.gene98501:intron 25.0%
!!! TGGGTAATTCTGTTTTAAAA+TGG + chr2.1:45276710-45276729 MS.gene98501:intron 25.0%
!!! TTATTTTTGCTACAATCTGA+AGG - chr2.1:45274918-45274937 None:intergenic 25.0%
!!! TTTGATAATTGCTCTAAGAT+TGG + chr2.1:45274218-45274237 MS.gene98501:intron 25.0%
AGTATTCTTATGAAAGGAAG+AGG - chr2.1:45273545-45273564 None:intergenic 30.0%
AGTTCAAACAATGAAATTGC+TGG + chr2.1:45273456-45273475 MS.gene98501:CDS 30.0%
ATGAATGTTTGTGAAAGGAA+AGG + chr2.1:45276137-45276156 MS.gene98501:intron 30.0%
ATTCAAGAACTAACTATTGG+AGG - chr2.1:45276504-45276523 None:intergenic 30.0%
CATTATAAGGAAGATGATGA+TGG + chr2.1:45276377-45276396 MS.gene98501:intron 30.0%
CTTAATAAAAGAGTAGATCC+TGG - chr2.1:45273940-45273959 None:intergenic 30.0%
GGAAAACAATGAAAACAACA+TGG + chr2.1:45274953-45274972 MS.gene98501:CDS 30.0%
GTAATGTTTAGATGGTTGAT+GGG + chr2.1:45275234-45275253 MS.gene98501:intron 30.0%
TAATCACTTACTTGGATTTG+GGG - chr2.1:45274012-45274031 None:intergenic 30.0%
TAATCCAGTATACACAAACA+TGG - chr2.1:45273585-45273604 None:intergenic 30.0%
TGATAATATATGCAAGGTCT+GGG + chr2.1:45276020-45276039 MS.gene98501:intron 30.0%
TGCCACTAATTAGCATTATA+AGG + chr2.1:45276364-45276383 MS.gene98501:intron 30.0%
TGTAATGTTTAGATGGTTGA+TGG + chr2.1:45275233-45275252 MS.gene98501:intron 30.0%
TTGTAGTGCATCATCAATTA+AGG - chr2.1:45275806-45275825 None:intergenic 30.0%
! CGGACAAACTATTAATTTGA+GGG + chr2.1:45275629-45275648 MS.gene98501:intron 30.0%
! GAAGTTGTGTTGTGTTATTA+AGG - chr2.1:45273969-45273988 None:intergenic 30.0%
! GACTATTAGTTCTTACTAGA+TGG + chr2.1:45275977-45275996 MS.gene98501:intron 30.0%
! GATCAGATTTTGCATTTGTA+AGG + chr2.1:45275084-45275103 MS.gene98501:intron 30.0%
! GGACAAACTATTAATTTGAG+GGG + chr2.1:45275630-45275649 MS.gene98501:intron 30.0%
! GGGTATTGTTTCTCATATTA+GGG + chr2.1:45276267-45276286 MS.gene98501:intron 30.0%
! GTAAATGAGACAAGTTTTCA+TGG - chr2.1:45276606-45276625 None:intergenic 30.0%
! GTAGCTATAACATTTGAGTT+TGG - chr2.1:45277011-45277030 None:intergenic 30.0%
! GTTTTCATTGTTTTCCACTA+TGG - chr2.1:45274949-45274968 None:intergenic 30.0%
! TATTAGTTCTTACTAGATGG+AGG + chr2.1:45275980-45275999 MS.gene98501:intron 30.0%
! TCGAGCTTATGATAGTTTTT+AGG - chr2.1:45275411-45275430 None:intergenic 30.0%
! TCGATTTTATAGAAGTGAGT+TGG + chr2.1:45275456-45275475 MS.gene98501:intron 30.0%
! TCTTCAGAATCGTTTACTTT+TGG + chr2.1:45274328-45274347 MS.gene98501:CDS 30.0%
! TTGATAATATATGCAAGGTC+TGG + chr2.1:45276019-45276038 MS.gene98501:intron 30.0%
! TTTAAGAGGTATGCTAAATC+TGG + chr2.1:45274286-45274305 MS.gene98501:CDS 30.0%
!! AAATAATGGATTTGCCATAG+TGG + chr2.1:45274932-45274951 MS.gene98501:CDS 30.0%
!! AGCAAGTTGTGATTATTTTG+AGG - chr2.1:45274383-45274402 None:intergenic 30.0%
!! AGGGTATTGTTTCTCATATT+AGG + chr2.1:45276266-45276285 MS.gene98501:intron 30.0%
!! GCAAATATGTTACTTTGTTC+TGG + chr2.1:45275773-45275792 MS.gene98501:intron 30.0%
!! TGTTCTAAAGACACTCTTTA+AGG + chr2.1:45276304-45276323 MS.gene98501:intron 30.0%
!! TTGTTGTAGATTTGTTGATG+AGG - chr2.1:45276937-45276956 None:intergenic 30.0%
!!! AATTTTGGATTTGGTGAATG+TGG + chr2.1:45274732-45274751 MS.gene98501:intron 30.0%
!!! TTCTTTTAGGTTGAATGTGT+AGG - chr2.1:45276435-45276454 None:intergenic 30.0%
AACACAACCAAAAAAGATGG+AGG + chr2.1:45276054-45276073 MS.gene98501:intron 35.0%
AATAATGCTTCCTTGAGAGA+AGG - chr2.1:45277248-45277267 None:intergenic 35.0%
AATGACCTTGGAATGGAAAA+GGG - chr2.1:45277133-45277152 None:intergenic 35.0%
AATGTTTGTGAAAGGAAAGG+TGG + chr2.1:45276140-45276159 MS.gene98501:intron 35.0%
AGAAAAAGATCCTTCTCTCA+AGG + chr2.1:45277235-45277254 MS.gene98501:CDS 35.0%
ATGTTTGTGAAAGGAAAGGT+GGG + chr2.1:45276141-45276160 MS.gene98501:intron 35.0%
ATTGCAATTAACAGGTGCAA+AGG + chr2.1:45276790-45276809 MS.gene98501:intron 35.0%
CAATTACCTAGTAAGAGTAG+TGG + chr2.1:45277323-45277342 MS.gene98501:CDS 35.0%
CACTACTCTTACTAGGTAAT+TGG - chr2.1:45277325-45277344 None:intergenic 35.0%
GATAATATATGCAAGGTCTG+GGG + chr2.1:45276021-45276040 MS.gene98501:intron 35.0%
GCATGTGAGTACATTAATGA+AGG + chr2.1:45274987-45275006 MS.gene98501:CDS 35.0%
GGATTTCCTTGAATTTGATG+GGG - chr2.1:45273991-45274010 None:intergenic 35.0%
GGGATTTCCTTGAATTTGAT+GGG - chr2.1:45273992-45274011 None:intergenic 35.0%
TAATGACCTTGGAATGGAAA+AGG - chr2.1:45277134-45277153 None:intergenic 35.0%
TAGTGTTGTCGATCATCAAT+TGG + chr2.1:45274677-45274696 MS.gene98501:intron 35.0%
TATGATGAAAATCATGGGTG+TGG + chr2.1:45273818-45273837 MS.gene98501:intron 35.0%
TATGCCATGTTTGTGTATAC+TGG + chr2.1:45273578-45273597 MS.gene98501:intron 35.0%
TGTTCATCACAACCTATGAA+GGG + chr2.1:45276832-45276851 MS.gene98501:CDS 35.0%
TTAATGCATTGAAAAAGGGG+AGG + chr2.1:45275844-45275863 MS.gene98501:intron 35.0%
TTTGGAAACACCTCAAATGA+TGG - chr2.1:45277161-45277180 None:intergenic 35.0%
! CAATGAGAGAAAACTTGCTT+TGG + chr2.1:45277190-45277209 MS.gene98501:CDS 35.0%
! GCGGACAAACTATTAATTTG+AGG + chr2.1:45275628-45275647 MS.gene98501:intron 35.0%
! GCTATAACATTTGAGTTTGG+TGG - chr2.1:45277008-45277027 None:intergenic 35.0%
! TCTTACTAGGTAATTGGCTT+TGG - chr2.1:45277319-45277338 None:intergenic 35.0%
! TTCCAAAGCACTTCAAACTT+AGG + chr2.1:45275871-45275890 MS.gene98501:intron 35.0%
! TTTGAGTTTGGTGGAGATAA+TGG - chr2.1:45276999-45277018 None:intergenic 35.0%
!! AAATAATCACAACTTGCTGC+TGG + chr2.1:45274385-45274404 MS.gene98501:CDS 35.0%
!! AATTGCTGGAAGTTGATGAA+AGG + chr2.1:45273470-45273489 MS.gene98501:CDS 35.0%
!! GATGATGTTAGGTTTGCTAT+TGG - chr2.1:45276891-45276910 None:intergenic 35.0%
!! TGTAGATTTGTTGATGAGGT+AGG - chr2.1:45276933-45276952 None:intergenic 35.0%
!!! ACTTTCACCTCCATCTTTTT+TGG - chr2.1:45276064-45276083 None:intergenic 35.0%
!!! CATCTTTTTTGGTTGTGTTC+GGG - chr2.1:45276053-45276072 None:intergenic 35.0%
!!! CCATCTTTTTTGGTTGTGTT+CGG - chr2.1:45276054-45276073 None:intergenic 35.0%
!!! GTTGTGATTATTTTGAGGCA+AGG - chr2.1:45274378-45274397 None:intergenic 35.0%
AAAATCTGATCGTGCCCTTA+TGG - chr2.1:45275075-45275094 None:intergenic 40.0%
AATAGAGGACCAATCATCTG+AGG + chr2.1:45275025-45275044 MS.gene98501:CDS 40.0%
AGAATCTCCATTTGTGAACG+AGG - chr2.1:45277282-45277301 None:intergenic 40.0%
AGTGTAATTGTAGGGCATGT+TGG - chr2.1:45277047-45277066 None:intergenic 40.0%
AGTTTACCTGCTTACGAACT+GGG - chr2.1:45275346-45275365 None:intergenic 40.0%
ATATGGACAAAAGACAGCCA+AGG + chr2.1:45275271-45275290 MS.gene98501:CDS 40.0%
ATGATTATGGCTCCCTTCAT+AGG - chr2.1:45276847-45276866 None:intergenic 40.0%
CAACTTCCCCATCAAATTCA+AGG + chr2.1:45273982-45274001 MS.gene98501:CDS 40.0%
CCGAACACAACCAAAAAAGA+TGG + chr2.1:45276051-45276070 MS.gene98501:intron 40.0%
CCTCTCTATTGAGAATGATG+CGG + chr2.1:45275609-45275628 MS.gene98501:intron 40.0%
GAAGCTTGATGAAGCAAAGA+AGG + chr2.1:45274253-45274272 MS.gene98501:CDS 40.0%
GAAGGGAAATACACAAGATG+CGG + chr2.1:45274848-45274867 MS.gene98501:intron 40.0%
GGGGATTTCCTTGAATTTGA+TGG - chr2.1:45273993-45274012 None:intergenic 40.0%
GGGTGTCAATGGAGAAAATA+TGG + chr2.1:45275254-45275273 MS.gene98501:CDS 40.0%
GTGTTCATCACAACCTATGA+AGG + chr2.1:45276831-45276850 MS.gene98501:CDS 40.0%
GTTGTCGATCATCAATTGGT+TGG + chr2.1:45274681-45274700 MS.gene98501:intron 40.0%
TAGTTTACCTGCTTACGAAC+TGG - chr2.1:45275347-45275366 None:intergenic 40.0%
TATGGACAAAAGACAGCCAA+GGG + chr2.1:45275272-45275291 MS.gene98501:CDS 40.0%
TCATCAAAGAACTGACGAGT+AGG - chr2.1:45274888-45274907 None:intergenic 40.0%
TCATTACCCTCCATCATTTG+AGG + chr2.1:45277148-45277167 MS.gene98501:CDS 40.0%
TGTATGAATCGAGATCATCG+AGG - chr2.1:45273636-45273655 None:intergenic 40.0%
TTGCTACAATCTGAAGGTGA+AGG - chr2.1:45274912-45274931 None:intergenic 40.0%
! AGCCTAAGTTTGAAGTGCTT+TGG - chr2.1:45275876-45275895 None:intergenic 40.0%
! GAAACACCTCAAATGATGGA+GGG - chr2.1:45277157-45277176 None:intergenic 40.0%
! GAGATAATGGTGAAGAGAAG+AGG - chr2.1:45276986-45277005 None:intergenic 40.0%
!! CTGGTGGAAGTTGATGATTA+TGG - chr2.1:45276860-45276879 None:intergenic 40.0%
!! GATTTGTTGATGAGGTAGGA+AGG - chr2.1:45276929-45276948 None:intergenic 40.0%
!! TAAGGAAGATGATGATGGGA+AGG + chr2.1:45276382-45276401 MS.gene98501:intron 40.0%
!! TGTTGAGTGCTGATGATGTT+AGG - chr2.1:45276902-45276921 None:intergenic 40.0%
!!! TTTGCTATTGGTTTTGCTGC+TGG - chr2.1:45276879-45276898 None:intergenic 40.0%
AACTGACGAGTAGGTAACAC+TGG - chr2.1:45274879-45274898 None:intergenic 45.0%
AGCCTACTATCGTTGCAGTA+TGG + chr2.1:45275310-45275329 MS.gene98501:CDS 45.0%
ATTGTAGGGCATGTTGGAGA+TGG - chr2.1:45277041-45277060 None:intergenic 45.0%
CCGCATCATTCTCAATAGAG+AGG - chr2.1:45275612-45275631 None:intergenic 45.0%
CCTACTATCGTTGCAGTATG+GGG + chr2.1:45275312-45275331 MS.gene98501:CDS 45.0%
GCCTACTATCGTTGCAGTAT+GGG + chr2.1:45275311-45275330 MS.gene98501:CDS 45.0%
GGAAACACCTCAAATGATGG+AGG - chr2.1:45277158-45277177 None:intergenic 45.0%
TCCATTTGTGAACGAGGACA+TGG - chr2.1:45277276-45277295 None:intergenic 45.0%
! AGGACCAATCATCTGAGGTT+GGG + chr2.1:45275030-45275049 MS.gene98501:CDS 45.0%
! ATGATGGAGGGTAATGACCT+TGG - chr2.1:45277145-45277164 None:intergenic 45.0%
! GAGAGCTAGAGTGTCCATAA+GGG + chr2.1:45275058-45275077 MS.gene98501:CDS 45.0%
! TTGCTCCCTTTTCCATTCCA+AGG + chr2.1:45277125-45277144 MS.gene98501:CDS 45.0%
!! ACAGGTGCAAAGGTGTTTCA+AGG + chr2.1:45276800-45276819 MS.gene98501:intron 45.0%
!! AGATGGTTGATGGGTGTCAA+TGG + chr2.1:45275243-45275262 MS.gene98501:intron 45.0%
CCCCATACTGCAACGATAGT+AGG - chr2.1:45275315-45275334 None:intergenic 50.0%
GATAGTAGGCTCGTGGACAA+GGG - chr2.1:45275301-45275320 None:intergenic 50.0%
GATGGGAAAATCATGCAGCC+AGG + chr2.1:45273919-45273938 MS.gene98501:intron 50.0%
GCCATGTCCTCGTTCACAAA+TGG + chr2.1:45277272-45277291 MS.gene98501:CDS 50.0%
GGAGGGTAATGACCTTGGAA+TGG - chr2.1:45277140-45277159 None:intergenic 50.0%
TGCACCCAACCTCAGATGAT+TGG - chr2.1:45275037-45275056 None:intergenic 50.0%
TTCATGCCCAGTTCGTAAGC+AGG + chr2.1:45275337-45275356 MS.gene98501:CDS 50.0%
! AATCATCTGAGGTTGGGTGC+AGG + chr2.1:45275036-45275055 MS.gene98501:CDS 50.0%
! GAGGACCAATCATCTGAGGT+TGG + chr2.1:45275029-45275048 MS.gene98501:CDS 50.0%
! GGAGAGCTAGAGTGTCCATA+AGG + chr2.1:45275057-45275076 MS.gene98501:CDS 50.0%
!!! GCTATTGGTTTTGCTGCTGG+TGG - chr2.1:45276876-45276895 None:intergenic 50.0%
CGATAGTAGGCTCGTGGACA+AGG - chr2.1:45275302-45275321 None:intergenic 55.0%
CTGCAACGATAGTAGGCTCG+TGG - chr2.1:45275308-45275327 None:intergenic 55.0%
GGAAAGGTGGGAAGCGAACT+AGG + chr2.1:45276153-45276172 MS.gene98501:intron 55.0%
TCGTGGACAAGGGTTGCCCT+TGG - chr2.1:45275291-45275310 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 45273445 45277349 45273445 ID=MS.gene98501
chr2.1 mRNA 45273445 45277349 45273445 ID=MS.gene98501.t1;Parent=MS.gene98501
chr2.1 exon 45273445 45273564 45273445 ID=MS.gene98501.t1.exon1;Parent=MS.gene98501.t1
chr2.1 CDS 45273445 45273564 45273445 ID=cds.MS.gene98501.t1;Parent=MS.gene98501.t1
chr2.1 exon 45273937 45274020 45273937 ID=MS.gene98501.t1.exon2;Parent=MS.gene98501.t1
chr2.1 CDS 45273937 45274020 45273937 ID=cds.MS.gene98501.t1;Parent=MS.gene98501.t1
chr2.1 exon 45274236 45274406 45274236 ID=MS.gene98501.t1.exon3;Parent=MS.gene98501.t1
chr2.1 CDS 45274236 45274406 45274236 ID=cds.MS.gene98501.t1;Parent=MS.gene98501.t1
chr2.1 exon 45274849 45275100 45274849 ID=MS.gene98501.t1.exon4;Parent=MS.gene98501.t1
chr2.1 CDS 45274849 45275100 45274849 ID=cds.MS.gene98501.t1;Parent=MS.gene98501.t1
chr2.1 exon 45275245 45275358 45275245 ID=MS.gene98501.t1.exon5;Parent=MS.gene98501.t1
chr2.1 CDS 45275245 45275358 45275245 ID=cds.MS.gene98501.t1;Parent=MS.gene98501.t1
chr2.1 exon 45276804 45277349 45276804 ID=MS.gene98501.t1.exon6;Parent=MS.gene98501.t1
chr2.1 CDS 45276804 45277349 45276804 ID=cds.MS.gene98501.t1;Parent=MS.gene98501.t1
Gene Sequence

>MS.gene98501

ATGGAAGAAAAAGTTCAAACAATGAAATTGCTGGAAGTTGATGAAAGGCCACCATATGATAATAACAATAAAGATCTACAAAACAAGATCGATGAATCCTCTTCCTTTCATAAGAATACTGTAAGTTTTCATTTATGCCATGTTTGTGTATACTGGATTAATTTCCATATTTGATATTTGATTATTAGCCTCGATGATCTCGATTCATACATAAAATTTACAATTTTGTTCATTGCTTTATTTTCTAATGCCTTTATAAAGAGTCATATACTTTGTTTAGGTAAATAGACTTGAGCATCTAATGCTTTATAAGTTGAAGTAGTTTTTTTTTCTTTTTAAAGAAGTTGAAGTAGTTTTTGTTCTTTTGTTAGCTTATGATGAAAATCATGGGTGTGGACATTTCATCTCATCATTCTTTTATCTCAATTACTTATTTTGTTAACAAAAAAACCTAACCTAATAACTTGACATTTTGATGGGAAAATCATGCAGCCAGGATCTACTCTTTTATTAAGTTTGAGCCTTAATAACACAACACAACTTCCCCATCAAATTCAAGGAAATCCCCAAATCCAAGTAAGTGATTAATCTTATTAGTGAATTTAAAGCATGTTTTTTTTAATTAACTTTCACACATAAATTTTAATTTATTTATATGAGAGTATATAAAGTAATTAATCTTATTAGTGAATTAAGAGCATGTGTTATTTTTAATTAACTTTCACACATAAATTTAAATTTATTTATATGATAGTATAAAAGTAATTTTTTGATTTGATAATTGCTCTAAGATTGGCAATATACGAGTGAAGCTTGATGAAGCAAAGAAGGAGAATGAAAATTTAAGAGGTATGCTAAATCTGGTCAACGATCGATGCAATGTTCTTCAGAATCGTTTACTTTTGGCTATGCATATGCATCAATCATCTTCCTTGCCTCAAAATAATCACAACTTGCTGCTGGTAAGTTTGACTTCAAAATTTTGTTCACATATCCTTATTTGATTCACACTCATTTTTTTGTTCTATTAAATTTACTTGAAATATTTAATGATCTCATGTATTTGGCCAACACGTCTTAATATTTTCAATAGTTATAGCTACAATTAATTAATTATATCCCGTCTAGTTACAAATAGATAAACCCAAAAAAATAAAAAATAATTAAGATTATAAAAAATTAGAAACGTATAATTTTTTGTTGTTTATGTAATTAACATGGCTTAGATGCTGTAGTGTTGTCGATCATCAATTGGTTGGACACATTCAATATGATAAATTAAACTTTAATTTTGGATTTGGTGAATGTGGTCAATTAAACTTTTTCAACCTATGATATTTTCAACTTGTAATAAATATAATTGCATATATTAACTTTTGTACATTTTTCTTCATAATTAATTAGAAGGGAAATACACAAGATGCGGAGAAACCAGTGTTACCTACTCGTCAGTTCTTTGATGAGCCTTCACCTTCAGATTGTAGCAAAAATAATGGATTTGCCATAGTGGAAAACAATGAAAACAACATGGGAAGAAATCTTGCATGTGAGTACATTAATGAAGGTGAAATAAATAGCAAAATAGAGGACCAATCATCTGAGGTTGGGTGCAGGAGAGCTAGAGTGTCCATAAGGGCACGATCAGATTTTGCATTTGTAAGGACATGCATGCAACTCTTCTTTTTTTTAATTAGTACAATAATCTAATAATATATTGCTCAAAAAAAAAATAATCTAATAATATAGTAATCAATAATGATTAATTTGTATTTTAAGTGTTAATTAATTTGTAATGTTTAGATGGTTGATGGGTGTCAATGGAGAAAATATGGACAAAAGACAGCCAAGGGCAACCCTTGTCCACGAGCCTACTATCGTTGCAGTATGGGGACTTCATGCCCAGTTCGTAAGCAGGTAAACTATAAATTAATTTGTTAGATCATACCATTTTGATATGATATGACCTAAAAACTATCATAAGCTCGAGTCATTTTTGTTTTAATCTTATAAATCGATTTTATAGAAGTGAGTTGGCTTTTATGCAAAATATAAGAATTTCAATTGGAAATCGTTAAATGTTAGCCCAACCTAAATTCTAAAAAATGTTATTTCAAAAATTGAACAATTTTTGTTTTTTATGTTTGTGGTATCACTTCACTTATTTCCTCTCTATTGAGAATGATGCGGACAAACTATTAATTTGAGGGGAAAATTAAAGAAAAAAATACAATGTTGTCAATATATTTTTGTTTTGCAATTTTTTTTGTCTTGTTTTTATATGTATAATAGAAATGGAGAAAGTACAATATTTTATATCTTGATATTTGAGCAAATATGTTACTTTGTTCTGGTGTTCGTCCTTAATTGATGATGCACTACAATGAGACATCACAACAATTTTAATGCATTGAAAAAGGGGAGGAACATTCCAAAGCACTTCAAACTTAGGCTCCAATTACATTACAAAAACTTTTTCAGTTTTTATCTTTTAAAATTTTATGTTCATTTTAAATTTCTATCAAAGATATGGAAGACTATTAGTTCTTACTAGATGGAGGTGAAAGAATAGTTCAATTGATAATATATGCAAGGTCTGGGGTTCGAACCCGAACACAACCAAAAAAGATGGAGGTGAAAGTTTCGTATTAATAACATGATAACCGAACAATAAATAAAATGGAACACTCATGTAATGAATGTTTGTGAAAGGAAAGGTGGGAAGCGAACTAGGAAGAACACATTTTCAAAGTTAATGAAAAAAGATGTATTTAGCATTTTCAAATATTTCGAAAATGGGGTTCATCTATTTTCAAATATTGTAAGGGTATTGTTTCTCATATTAGGGTCTTTTTAAACGAGTGTTCTAAAGACACTCTTTAAGGATTCTCATTTAATAAACTATCTATTTAAAGTTCTTTATGCCACTAATTAGCATTATAAGGAAGATGATGATGGGAAGGAAACAATTATTTATTTGAGCTTTGATACCTACACATTCAACCTAAAAGAATGAAATGAGAATTTCTATAGCTCATATTCTTGCAGTAATTGATTATCCTCCAATAGTTAGTTCTTGAATTTTGCAACACTCTGAATAAACATTATTTTAACAAATTTTTCACTTATTTGTAGTCTCAAATATGTACTTCTGTTCAAAACCATGAAAACTTGTCTCATTTACTAATTGTAAGTGCACTTTTCATAAAAAGTCATGAATACATCATAAGGAATAATGATGAGACTATTTTAAGGATCAAATTATTGTTGGGTAATTCTGTTTTAAAATGGTGTCTATATGAATGAAATTTTTTGCATATTGTTAACTCAATATATGATATTAATTACATTGCAATTAACAGGTGCAAAGGTGTTTCAAGGATGAGAGTGTGTTCATCACAACCTATGAAGGGAGCCATAATCATCAACTTCCACCAGCAGCAAAACCAATAGCAAACCTAACATCATCAGCACTCAACACATTCCTTCCTACCTCATCAACAAATCTACAACAATATGGCAACAATCTAACAAATACATTCCTCTTCTCTTCACCATTATCTCCACCAAACTCAAATGTTATAGCTACTTTCTCTCCATCTCCAACATGCCCTACAATTACACTTGATTTTACACTCCCTCCAAGTAACTATTTACAATTCAAAAATCATAAACAATCATCATTGCTCCCTTTTCCATTCCAAGGTCATTACCCTCCATCATTTGAGGTGTTTCCAAATATGATAAACAATGAGAGAAAACTTGCTTTGGTTGATGTTGTGAGTGAAGCTCTAGAAAAAGATCCTTCTCTCAAGGAAGCATTATTTTCAGCCATGTCCTCGTTCACAAATGGAGATTCTTCAAATATTAATAACCAAAGCCAATTACCTAGTAAGAGTAGTGGTTAA
Protein sequence

>MS.gene98501.t1

MEEKVQTMKLLEVDERPPYDNNNKDLQNKIDESSSFHKNTPGSTLLLSLSLNNTTQLPHQIQGNPQIQIGNIRVKLDEAKKENENLRGMLNLVNDRCNVLQNRLLLAMHMHQSSSLPQNNHNLLLKGNTQDAEKPVLPTRQFFDEPSPSDCSKNNGFAIVENNENNMGRNLACEYINEGEINSKIEDQSSEVGCRRARVSIRARSDFAFMVDGCQWRKYGQKTAKGNPCPRAYYRCSMGTSCPVRKQVQRCFKDESVFITTYEGSHNHQLPPAAKPIANLTSSALNTFLPTSSTNLQQYGNNLTNTFLFSSPLSPPNSNVIATFSPSPTCPTITLDFTLPPSNYLQFKNHKQSSLLPFPFQGHYPPSFEVFPNMINNERKLALVDVVSEALEKDPSLKEALFSAMSSFTNGDSSNINNQSQLPSKSSG