Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99087.t1 | AET00363.2 | 93.1 | 130 | 8 | 1 | 44 | 172 | 122 | 251 | 2.50E-59 | 238.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99087.t1 | Q9FPT1 | 57.9 | 95 | 39 | 1 | 95 | 188 | 533 | 627 | 1.7e-21 | 104.4 |
| MS.gene99087.t1 | Q9FPT1 | 57.4 | 47 | 20 | 0 | 46 | 92 | 133 | 179 | 1.3e-08 | 61.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99087.t1 | G7KD35 | 93.1 | 130 | 8 | 1 | 44 | 172 | 122 | 251 | 1.8e-59 | 238.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene99087 | 0.820584 | 6.35E-53 | -1.69E-46 |
| MS.gene049159 | MS.gene99087 | 0.817643 | 2.96E-52 | -1.69E-46 |
| MS.gene049254 | MS.gene99087 | 0.807925 | 3.98E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene99087 | 0.816631 | 5.01E-52 | -1.69E-46 |
| MS.gene050844 | MS.gene99087 | 0.815646 | 8.31E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene99087 | 0.805591 | 1.24E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene99087 | 0.805508 | 1.29E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene99087 | 0.809628 | 1.72E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene99087 | 0.824687 | 7.05E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene99087 | 0.810686 | 1.02E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene99087 | 0.817174 | 3.78E-52 | -1.69E-46 |
| MS.gene05468 | MS.gene99087 | 0.802545 | 5.33E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene99087 | 0.820541 | 6.50E-53 | -1.69E-46 |
| MS.gene055623 | MS.gene99087 | 0.817257 | 3.62E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene99087 | 0.834872 | 2.33E-56 | -1.69E-46 |
| MS.gene056050 | MS.gene99087 | 0.803636 | 3.17E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene99087 | 0.810753 | 9.85E-51 | -1.69E-46 |
| MS.gene057598 | MS.gene99087 | 0.804629 | 1.97E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene99087 | 0.801237 | 9.90E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene99087 | 0.820181 | 7.85E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene99087 | 0.809286 | 2.04E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene99087 | 0.80653 | 7.87E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene99087 | 0.810682 | 1.02E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene99087 | 0.800385 | 1.48E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99087.t1 | MTR_5g091180 | 93.077 | 130 | 8 | 1 | 44 | 172 | 122 | 251 | 1.73e-77 | 247 |
| MS.gene99087.t1 | MTR_5g091550 | 50.909 | 165 | 80 | 1 | 46 | 209 | 96 | 260 | 5.62e-42 | 148 |
| MS.gene99087.t1 | MTR_5g091550 | 49.412 | 170 | 80 | 2 | 46 | 209 | 96 | 265 | 1.24e-39 | 142 |
| MS.gene99087.t1 | MTR_5g091530 | 55.405 | 148 | 61 | 2 | 26 | 172 | 23 | 166 | 1.51e-39 | 140 |
| MS.gene99087.t1 | MTR_5g091450 | 65.625 | 128 | 43 | 1 | 46 | 172 | 111 | 238 | 6.86e-37 | 137 |
| MS.gene99087.t1 | MTR_5g086700 | 67.033 | 91 | 29 | 1 | 91 | 180 | 533 | 623 | 1.68e-18 | 84.3 |
| MS.gene99087.t1 | MTR_5g086700 | 54.000 | 50 | 23 | 0 | 43 | 92 | 135 | 184 | 1.63e-11 | 63.9 |
| MS.gene99087.t1 | MTR_5g086700 | 67.033 | 91 | 29 | 1 | 91 | 180 | 533 | 623 | 1.71e-18 | 84.3 |
| MS.gene99087.t1 | MTR_5g086700 | 54.000 | 50 | 23 | 0 | 43 | 92 | 135 | 184 | 1.63e-11 | 63.9 |
| MS.gene99087.t1 | MTR_5g091410 | 55.294 | 85 | 33 | 1 | 101 | 180 | 4 | 88 | 5.68e-18 | 82.4 |
| MS.gene99087.t1 | MTR_3g079840 | 67.816 | 87 | 27 | 1 | 95 | 180 | 532 | 618 | 1.63e-17 | 81.3 |
| MS.gene99087.t1 | MTR_3g079840 | 56.000 | 50 | 22 | 0 | 43 | 92 | 130 | 179 | 4.58e-12 | 65.5 |
| MS.gene99087.t1 | MTR_3g079840 | 67.816 | 87 | 27 | 1 | 95 | 180 | 533 | 619 | 1.63e-17 | 81.3 |
| MS.gene99087.t1 | MTR_3g079840 | 56.000 | 50 | 22 | 0 | 43 | 92 | 131 | 180 | 4.45e-12 | 65.5 |
| MS.gene99087.t1 | MTR_5g091430 | 78.000 | 50 | 11 | 0 | 123 | 172 | 2 | 51 | 3.78e-17 | 80.1 |
| MS.gene99087.t1 | MTR_1g041240 | 59.770 | 87 | 34 | 1 | 95 | 180 | 532 | 618 | 9.43e-16 | 76.3 |
| MS.gene99087.t1 | MTR_1g041240 | 59.770 | 87 | 34 | 1 | 95 | 180 | 534 | 620 | 9.43e-16 | 76.3 |
| MS.gene99087.t1 | MTR_1g041240 | 59.770 | 87 | 34 | 1 | 95 | 180 | 533 | 619 | 9.70e-16 | 76.3 |
| MS.gene99087.t1 | MTR_5g091460 | 74.419 | 43 | 11 | 0 | 123 | 165 | 2 | 44 | 2.27e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99087.t1 | AT5G06600 | 63.218 | 87 | 31 | 1 | 95 | 180 | 533 | 619 | 8.18e-22 | 94.0 |
| MS.gene99087.t1 | AT5G06600 | 56.250 | 48 | 21 | 0 | 46 | 93 | 133 | 180 | 6.25e-11 | 62.0 |
| MS.gene99087.t1 | AT5G06600 | 63.218 | 87 | 31 | 1 | 95 | 180 | 532 | 618 | 8.28e-22 | 94.0 |
| MS.gene99087.t1 | AT5G06600 | 56.250 | 48 | 21 | 0 | 46 | 93 | 132 | 179 | 5.75e-11 | 62.4 |
| MS.gene99087.t1 | AT5G06600 | 63.218 | 87 | 31 | 1 | 95 | 180 | 533 | 619 | 8.60e-22 | 94.0 |
| MS.gene99087.t1 | AT5G06600 | 56.250 | 48 | 21 | 0 | 46 | 93 | 133 | 180 | 5.70e-11 | 62.4 |
| MS.gene99087.t1 | AT3G11910 | 57.471 | 87 | 36 | 1 | 95 | 180 | 530 | 616 | 2.34e-18 | 84.0 |
| MS.gene99087.t1 | AT3G11910 | 57.471 | 87 | 36 | 1 | 95 | 180 | 530 | 616 | 2.34e-18 | 84.0 |
| MS.gene99087.t1 | AT3G11910 | 57.471 | 87 | 36 | 1 | 95 | 180 | 531 | 617 | 2.41e-18 | 84.0 |
| MS.gene99087.t1 | AT3G11910 | 57.471 | 87 | 36 | 1 | 95 | 180 | 531 | 617 | 2.41e-18 | 84.0 |
Find 56 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTAAATGTCGTATTCT+TGG | 0.238172 | 5.2:+64041232 | None:intergenic |
| GGAGAAAATTAAGTACCTTT+TGG | 0.268937 | 5.2:-64042294 | MS.gene99087:CDS |
| GAATGTTGCAATGGAAATTC+TGG | 0.305775 | 5.2:-64039839 | MS.gene99087:CDS |
| TTTCCGAGGAAGTGACATTA+AGG | 0.317568 | 5.2:-64040814 | MS.gene99087:intron |
| CGAAAACTGCTCACTTTGTC+AGG | 0.338038 | 5.2:+64041260 | None:intergenic |
| TTTCGATTATATAGGTCATT+TGG | 0.340908 | 5.2:-64042194 | MS.gene99087:CDS |
| TCTTTAAATGTCGTATTCTT+GGG | 0.382339 | 5.2:+64041233 | None:intergenic |
| TACGACATTTAAAGATTTCA+AGG | 0.384454 | 5.2:-64041225 | MS.gene99087:intron |
| TCAATGAACAAGAATGTGAT+TGG | 0.386782 | 5.2:-64042011 | MS.gene99087:CDS |
| CAGTGTTGGAGTACTCCTTC+AGG | 0.395328 | 5.2:-64042225 | MS.gene99087:CDS |
| TCACCTCTACACTATTATAA+AGG | 0.410063 | 5.2:-64041449 | MS.gene99087:intron |
| GAGACAAGTGGAGTTGTTAG+TGG | 0.419382 | 5.2:-64042272 | MS.gene99087:CDS |
| AGGACATCGCCGATCATGTA+AGG | 0.431531 | 5.2:-64041882 | MS.gene99087:CDS |
| GTTATTGCAGTTAGATGCTA+TGG | 0.441273 | 5.2:-64040903 | MS.gene99087:intron |
| CAATGAACAAGAATGTGATT+GGG | 0.444176 | 5.2:-64042010 | MS.gene99087:CDS |
| TTCACAACATACCCACTTGA+AGG | 0.457952 | 5.2:+64041949 | None:intergenic |
| CATTCATAAACCTTGTCCCT+TGG | 0.473687 | 5.2:+64040843 | None:intergenic |
| CAACTCCACTTGTCTCCAAA+AGG | 0.476312 | 5.2:+64042279 | None:intergenic |
| TCATAAACCTTGTCCCTTGG+AGG | 0.489909 | 5.2:+64040846 | None:intergenic |
| GGAGTTACTGCTAGCAGTGT+TGG | 0.495869 | 5.2:-64042239 | MS.gene99087:CDS |
| GAAGACCTTGCACAACAGAT+TGG | 0.502825 | 5.2:-64041311 | MS.gene99087:CDS |
| GGAGTACTCCTTCAGGCTTG+TGG | 0.514426 | 5.2:-64042218 | MS.gene99087:CDS |
| TACTCTTGTAGTTGAAGTTG+AGG | 0.519380 | 5.2:-64041923 | MS.gene99087:CDS |
| CTTGTGGATTTCGATTATAT+AGG | 0.526185 | 5.2:-64042202 | MS.gene99087:CDS |
| TTACCTTAATGTCACTTCCT+CGG | 0.538524 | 5.2:+64040811 | None:intergenic |
| GTGGAGTTGTTAGTGGACCT+TGG | 0.540262 | 5.2:-64042265 | MS.gene99087:CDS |
| TAATTCATCAAGAGGTATGA+AGG | 0.545276 | 5.2:+64041978 | None:intergenic |
| TTTCCATTGCAACATTCCAT+TGG | 0.554069 | 5.2:+64039845 | None:intergenic |
| AACATACCCACTTGAAGGAT+CGG | 0.555156 | 5.2:+64041954 | None:intergenic |
| TCTACTTACCCTTACATGAT+CGG | 0.559240 | 5.2:+64041873 | None:intergenic |
| CCTTTCCAATCTGTTGTGCA+AGG | 0.559503 | 5.2:+64041306 | None:intergenic |
| TTTATGTGTCTAACTGCCAA+TGG | 0.562504 | 5.2:-64039861 | MS.gene99087:CDS |
| TTGCAATGGAAATTCTGGAT+AGG | 0.568841 | 5.2:-64039834 | MS.gene99087:CDS |
| GTTGTTAGTGGACCTTGGAA+AGG | 0.569177 | 5.2:-64042260 | MS.gene99087:CDS |
| GTTAGATGCTATGGAACAGA+GGG | 0.570429 | 5.2:-64040894 | MS.gene99087:CDS |
| ACAGAGGGGAGAAGAAAAGA+TGG | 0.571714 | 5.2:-64040879 | MS.gene99087:CDS |
| CTGCCAATGGAATGTTGCAA+TGG | 0.579170 | 5.2:-64039848 | MS.gene99087:CDS |
| GGTAACACGCAATGTGGATG+AGG | 0.583607 | 5.2:-64041902 | MS.gene99087:CDS |
| ATCGAAATCCACAAGCCTGA+AGG | 0.585554 | 5.2:+64042210 | None:intergenic |
| GAATTATCCGATCCTTCAAG+TGG | 0.606514 | 5.2:-64041961 | MS.gene99087:CDS |
| ATGGTCAACAAGTACCTCCA+AGG | 0.610769 | 5.2:-64040860 | MS.gene99087:CDS |
| GGATCGGATAATTCATCAAG+AGG | 0.615852 | 5.2:+64041970 | None:intergenic |
| ACAAGTACCTCCAAGGGACA+AGG | 0.624136 | 5.2:-64040853 | MS.gene99087:CDS |
| TCATCAAGAGGTATGAAGGA+CGG | 0.634182 | 5.2:+64041982 | None:intergenic |
| GATGAGATCAGTGTCTACAA+TGG | 0.634391 | 5.2:-64042172 | MS.gene99087:intron |
| AATGAACAAGAATGTGATTG+GGG | 0.637571 | 5.2:-64042009 | MS.gene99087:CDS |
| GAAAACTGCTCACTTTGTCA+GGG | 0.641231 | 5.2:+64041261 | None:intergenic |
| CTAGCAGTAACTCCTTTCCA+AGG | 0.647531 | 5.2:+64042248 | None:intergenic |
| GGACATCGCCGATCATGTAA+GGG | 0.650752 | 5.2:-64041881 | MS.gene99087:intron |
| TGGTCAACAAGTACCTCCAA+GGG | 0.653707 | 5.2:-64040859 | MS.gene99087:CDS |
| ACACCTTTATAATAGTGTAG+AGG | 0.656703 | 5.2:+64041446 | None:intergenic |
| CCTTGCACAACAGATTGGAA+AGG | 0.664856 | 5.2:-64041306 | MS.gene99087:CDS |
| AGTTAGATGCTATGGAACAG+AGG | 0.684276 | 5.2:-64040895 | MS.gene99087:CDS |
| AATTATCCGATCCTTCAAGT+GGG | 0.688157 | 5.2:-64041960 | MS.gene99087:CDS |
| AGTTGAGGTAACACGCAATG+TGG | 0.705176 | 5.2:-64041908 | MS.gene99087:CDS |
| TTAGATGCTATGGAACAGAG+GGG | 0.799216 | 5.2:-64040893 | MS.gene99087:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACGAAAAAAATAAATAATA+TGG | + | chr5.2:64042357-64042376 | None:intergenic | 10.0% |
| !!! | TAATAATTAAATATTGGTTT+AGG | + | chr5.2:64040583-64040602 | None:intergenic | 10.0% |
| !!! | TATTATTTATTTTTTTCGTA+AGG | - | chr5.2:64042357-64042376 | MS.gene99087:intron | 10.0% |
| !! | AAAAGGAAAATAATATACAA+AGG | + | chr5.2:64041816-64041835 | None:intergenic | 15.0% |
| !! | CTATATTATCATTATTTAAC+TGG | - | chr5.2:64041466-64041485 | MS.gene99087:CDS | 15.0% |
| !!! | TCAGTATATTTTTATTTCAT+AGG | - | chr5.2:64041179-64041198 | MS.gene99087:intron | 15.0% |
| !!! | TTGATCATATTCTTTTTAAT+AGG | - | chr5.2:64041862-64041881 | MS.gene99087:intron | 15.0% |
| !! | ATTATTAATTTCTCATGAGA+TGG | - | chr5.2:64040596-64040615 | MS.gene99087:intron | 20.0% |
| !! | TCAAATTTCATAATAGCAAA+GGG | + | chr5.2:64042090-64042109 | None:intergenic | 20.0% |
| !!! | GTTTTAGTAATTGTTTAATG+TGG | - | chr5.2:64041294-64041313 | MS.gene99087:CDS | 20.0% |
| ! | AAAGATAGCAAACTTCAATT+AGG | + | chr5.2:64042258-64042277 | None:intergenic | 25.0% |
| ! | AGAATATGATCAACCTAAAA+AGG | + | chr5.2:64041855-64041874 | None:intergenic | 25.0% |
| ! | AGTTAATGCAATTATTCACA+AGG | + | chr5.2:64041078-64041097 | None:intergenic | 25.0% |
| ! | ATCTTTAAATGTCGTATTCT+TGG | + | chr5.2:64041025-64041044 | None:intergenic | 25.0% |
| ! | ATTGTCTTGAAATACTCATA+CGG | + | chr5.2:64040623-64040642 | None:intergenic | 25.0% |
| ! | CAAATTTCATAATAGCAAAG+GGG | + | chr5.2:64042089-64042108 | None:intergenic | 25.0% |
| ! | CAACAGAAATTAAAAGTTAG+TGG | + | chr5.2:64040664-64040683 | None:intergenic | 25.0% |
| ! | CTCAAATTTCATAATAGCAA+AGG | + | chr5.2:64042091-64042110 | None:intergenic | 25.0% |
| ! | GTGCTTATGTCTTAAATTTA+AGG | - | chr5.2:64041272-64041291 | MS.gene99087:CDS | 25.0% |
| ! | TACGACATTTAAAGATTTCA+AGG | - | chr5.2:64041029-64041048 | MS.gene99087:intron | 25.0% |
| ! | TATGTTTATACTGCTAACTT+AGG | - | chr5.2:64040909-64040928 | MS.gene99087:intron | 25.0% |
| ! | TCTTTAAATGTCGTATTCTT+GGG | + | chr5.2:64041024-64041043 | None:intergenic | 25.0% |
| ! | TTTCGATTATATAGGTCATT+TGG | - | chr5.2:64040060-64040079 | MS.gene99087:intron | 25.0% |
| ! | TTTGTGTATATTTGAGAAGA+TGG | + | chr5.2:64041108-64041127 | None:intergenic | 25.0% |
| !! | AACAAACATTACTAGTTTCT+AGG | + | chr5.2:64040848-64040867 | None:intergenic | 25.0% |
| !! | ACAAACATTACTAGTTTCTA+GGG | + | chr5.2:64040847-64040866 | None:intergenic | 25.0% |
| !! | GAGAATTTTGTAGAAGTAAA+AGG | + | chr5.2:64041833-64041852 | None:intergenic | 25.0% |
| !! | GTGTTAATTGCTATTCTTTA+AGG | + | chr5.2:64042207-64042226 | None:intergenic | 25.0% |
| !! | TCTACAAAATTCTCCTTTTT+AGG | - | chr5.2:64041839-64041858 | MS.gene99087:intron | 25.0% |
| !!! | ATTAGAGCTCTAAACTTATT+TGG | + | chr5.2:64040483-64040502 | None:intergenic | 25.0% |
| !!! | ATTGGTTTAGGAAATACTTT+TGG | + | chr5.2:64040571-64040590 | None:intergenic | 25.0% |
| !!! | CTTTGCTATTATGAAATTTG+AGG | - | chr5.2:64042089-64042108 | MS.gene99087:intron | 25.0% |
| !!! | GAAAGTTTTGTTTATGAAGT+AGG | - | chr5.2:64041144-64041163 | MS.gene99087:intron | 25.0% |
| !!! | TAATTGAAGTTTGCTATCTT+TGG | - | chr5.2:64042257-64042276 | MS.gene99087:CDS | 25.0% |
| !!! | TTTTGTGCTTTTTTACTTTC+TGG | + | chr5.2:64040766-64040785 | None:intergenic | 25.0% |
| !!! | TTTTTCGTAAGGTATTTTGA+TGG | - | chr5.2:64042368-64042387 | MS.gene99087:intron | 25.0% |
| AAAAGTTGCATAAACGAACT+AGG | + | chr5.2:64041694-64041713 | None:intergenic | 30.0% | |
| AAAGTTGCATAAACGAACTA+GGG | + | chr5.2:64041693-64041712 | None:intergenic | 30.0% | |
| AACTTTCTGCAAAAGATGAT+AGG | + | chr5.2:64040454-64040473 | None:intergenic | 30.0% | |
| AATGAACAAGAATGTGATTG+GGG | - | chr5.2:64040245-64040264 | MS.gene99087:intron | 30.0% | |
| ACACCTTTATAATAGTGTAG+AGG | + | chr5.2:64040811-64040830 | None:intergenic | 30.0% | |
| ACTCAATAGATTGATGTGTA+TGG | - | chr5.2:64041732-64041751 | MS.gene99087:intron | 30.0% | |
| CAAAAATAAAGAAAACGCAG+AGG | - | chr5.2:64040781-64040800 | MS.gene99087:intron | 30.0% | |
| CAAATATACACAAAGAGTCA+TGG | - | chr5.2:64041114-64041133 | MS.gene99087:intron | 30.0% | |
| CAATGAACAAGAATGTGATT+GGG | - | chr5.2:64040244-64040263 | MS.gene99087:intron | 30.0% | |
| CTTGTGGATTTCGATTATAT+AGG | - | chr5.2:64040052-64040071 | MS.gene99087:intron | 30.0% | |
| GCATTAATACAAGTATGCTA+TGG | - | chr5.2:64041201-64041220 | MS.gene99087:intron | 30.0% | |
| GCTGTGATATATCTTAATTG+AGG | - | chr5.2:64041608-64041627 | MS.gene99087:intron | 30.0% | |
| TAAAAGTTAGTGGCAAACAT+AGG | + | chr5.2:64040654-64040673 | None:intergenic | 30.0% | |
| TAAATTACATAAGTCACACG+AGG | + | chr5.2:64041236-64041255 | None:intergenic | 30.0% | |
| TCAATGAACAAGAATGTGAT+TGG | - | chr5.2:64040243-64040262 | MS.gene99087:intron | 30.0% | |
| TCACCTCTACACTATTATAA+AGG | - | chr5.2:64040805-64040824 | MS.gene99087:intron | 30.0% | |
| TTATAAAACTCTCACCAAGA+AGG | - | chr5.2:64041894-64041913 | MS.gene99087:CDS | 30.0% | |
| ! | AAGTAAACTTGTCTCTGAAA+AGG | - | chr5.2:64042306-64042325 | MS.gene99087:intron | 30.0% |
| ! | CAAGAGGATCATTTATTTCT+AGG | - | chr5.2:64042026-64042045 | MS.gene99087:CDS | 30.0% |
| ! | GGAGAAAATTAAGTACCTTT+TGG | - | chr5.2:64039960-64039979 | MS.gene99087:intron | 30.0% |
| ! | GTTAAGTATTGCTCAAATTC+AGG | - | chr5.2:64041762-64041781 | MS.gene99087:intron | 30.0% |
| ! | TAATTCATCAAGAGGTATGA+AGG | + | chr5.2:64040279-64040298 | None:intergenic | 30.0% |
| ! | TCAAGGTATCATCATTAGTT+AGG | - | chr5.2:64041046-64041065 | MS.gene99087:intron | 30.0% |
| ! | TTTAGGAAATACTTTTGGTC+AGG | + | chr5.2:64040566-64040585 | None:intergenic | 30.0% |
| !! | TACCTGGCTTGATTTATTTT+GGG | + | chr5.2:64040427-64040446 | None:intergenic | 30.0% |
| !! | TTGTTTTGTGCATTTTGCAT+AGG | - | chr5.2:64039900-64039919 | MS.gene99087:intron | 30.0% |
| !!! | TTCTGTTGTACTTTTTCTGT+TGG | - | chr5.2:64040676-64040695 | MS.gene99087:intron | 30.0% |
| AACTGCAATAACATACCACA+AGG | + | chr5.2:64041343-64041362 | None:intergenic | 35.0% | |
| AATTATCCGATCCTTCAAGT+GGG | - | chr5.2:64040294-64040313 | MS.gene99087:intron | 35.0% | |
| CTATTCTGTAAAATCTGCAC+TGG | - | chr5.2:64040700-64040719 | MS.gene99087:intron | 35.0% | |
| CTCCTTAATTTACACCAAAC+AGG | + | chr5.2:64039944-64039963 | None:intergenic | 35.0% | |
| GAATGTTGCAATGGAAATTC+TGG | - | chr5.2:64042415-64042434 | MS.gene99087:intron | 35.0% | |
| GATGAGATTGGATTATGTGT+AGG | - | chr5.2:64041986-64042005 | MS.gene99087:CDS | 35.0% | |
| GTTATTGCAGTTAGATGCTA+TGG | - | chr5.2:64041351-64041370 | MS.gene99087:intron | 35.0% | |
| GTTTATACTGCTAACTTAGG+TGG | - | chr5.2:64040912-64040931 | MS.gene99087:intron | 35.0% | |
| TACTCTTGTAGTTGAAGTTG+AGG | - | chr5.2:64040331-64040350 | MS.gene99087:intron | 35.0% | |
| TCTACTTACCCTTACATGAT+CGG | + | chr5.2:64040384-64040403 | None:intergenic | 35.0% | |
| TTGCAATGGAAATTCTGGAT+AGG | - | chr5.2:64042420-64042439 | MS.gene99087:intron | 35.0% | |
| TTTATGTGTCTAACTGCCAA+TGG | - | chr5.2:64042393-64042412 | MS.gene99087:intron | 35.0% | |
| TTTCCATTGCAACATTCCAT+TGG | + | chr5.2:64042412-64042431 | None:intergenic | 35.0% | |
| ! | ATTGCTCAAATTCAGGTTCT+TGG | - | chr5.2:64041769-64041788 | MS.gene99087:intron | 35.0% |
| ! | GACAAGTTTACTTGATGACA+AGG | + | chr5.2:64042299-64042318 | None:intergenic | 35.0% |
| ! | TATGAATGCATTCTTTTCCG+AGG | - | chr5.2:64041426-64041445 | MS.gene99087:intron | 35.0% |
| ! | TGGTGCAACTGATGTATTTT+GGG | - | chr5.2:64041789-64041808 | MS.gene99087:intron | 35.0% |
| ! | TTACCTTAATGTCACTTCCT+CGG | + | chr5.2:64041446-64041465 | None:intergenic | 35.0% |
| ! | TTGGTGCAACTGATGTATTT+TGG | - | chr5.2:64041788-64041807 | MS.gene99087:intron | 35.0% |
| ! | TTTGTACAATGGGTTTATGC+AGG | - | chr5.2:64040724-64040743 | MS.gene99087:intron | 35.0% |
| !! | CTACCTGGCTTGATTTATTT+TGG | + | chr5.2:64040428-64040447 | None:intergenic | 35.0% |
| !! | GACCTGTTTGGTGTAAATTA+AGG | - | chr5.2:64039939-64039958 | MS.gene99087:intron | 35.0% |
| AACATACCCACTTGAAGGAT+CGG | + | chr5.2:64040303-64040322 | None:intergenic | 40.0% | |
| ACACAAAGAGTCATGGAAGT+TGG | - | chr5.2:64041121-64041140 | MS.gene99087:intron | 40.0% | |
| AGAAGGCTTAATCGACTGAT+TGG | - | chr5.2:64041911-64041930 | MS.gene99087:CDS | 40.0% | |
| AGCCCAAAATAAATCAAGCC+AGG | - | chr5.2:64040422-64040441 | MS.gene99087:intron | 40.0% | |
| AGCTTGGAATGATGAACAAG+AGG | - | chr5.2:64042010-64042029 | MS.gene99087:CDS | 40.0% | |
| AGTTAGATGCTATGGAACAG+AGG | - | chr5.2:64041359-64041378 | MS.gene99087:intron | 40.0% | |
| AGTTAGTGGCAAACATAGGT+TGG | + | chr5.2:64040650-64040669 | None:intergenic | 40.0% | |
| ATCAGTCGATTAAGCCTTCT+TGG | + | chr5.2:64041911-64041930 | None:intergenic | 40.0% | |
| ATCCAATCTCATCAGTTGTG+TGG | + | chr5.2:64041979-64041998 | None:intergenic | 40.0% | |
| ATGCTGCAGAAAACAAAGAC+AGG | + | chr5.2:64042230-64042249 | None:intergenic | 40.0% | |
| CAAGGATCTCCAAGTTAGAA+AGG | + | chr5.2:64041325-64041344 | None:intergenic | 40.0% | |
| CACAAAGAGTCATGGAAGTT+GGG | - | chr5.2:64041122-64041141 | MS.gene99087:intron | 40.0% | |
| CATTCATAAACCTTGTCCCT+TGG | + | chr5.2:64041414-64041433 | None:intergenic | 40.0% | |
| GAAAACTGCTCACTTTGTCA+GGG | + | chr5.2:64040996-64041015 | None:intergenic | 40.0% | |
| GAAGGCTTAATCGACTGATT+GGG | - | chr5.2:64041912-64041931 | MS.gene99087:CDS | 40.0% | |
| GAATTATCCGATCCTTCAAG+TGG | - | chr5.2:64040293-64040312 | MS.gene99087:intron | 40.0% | |
| GATGAGATCAGTGTCTACAA+TGG | - | chr5.2:64040082-64040101 | MS.gene99087:intron | 40.0% | |
| GGATCGGATAATTCATCAAG+AGG | + | chr5.2:64040287-64040306 | None:intergenic | 40.0% | |
| GTGGAAGTTCCTTTCTAACT+TGG | - | chr5.2:64041313-64041332 | MS.gene99087:CDS | 40.0% | |
| GTTAGATGCTATGGAACAGA+GGG | - | chr5.2:64041360-64041379 | MS.gene99087:intron | 40.0% | |
| TACCACACAACTGATGAGAT+TGG | - | chr5.2:64041974-64041993 | MS.gene99087:CDS | 40.0% | |
| TGCTGCAGAAAACAAAGACA+GGG | + | chr5.2:64042229-64042248 | None:intergenic | 40.0% | |
| TGGATTATGTGTAGGTAGCT+TGG | - | chr5.2:64041994-64042013 | MS.gene99087:CDS | 40.0% | |
| TTAGATGCTATGGAACAGAG+GGG | - | chr5.2:64041361-64041380 | MS.gene99087:intron | 40.0% | |
| TTCACAACATACCCACTTGA+AGG | + | chr5.2:64040308-64040327 | None:intergenic | 40.0% | |
| TTCTAACTTGGAGATCCTTG+TGG | - | chr5.2:64041325-64041344 | MS.gene99087:CDS | 40.0% | |
| TTTCCGAGGAAGTGACATTA+AGG | - | chr5.2:64041440-64041459 | MS.gene99087:intron | 40.0% | |
| ! | GGTGCAACTGATGTATTTTG+GGG | - | chr5.2:64041790-64041809 | MS.gene99087:intron | 40.0% |
| ! | TCATCAAGAGGTATGAAGGA+CGG | + | chr5.2:64040275-64040294 | None:intergenic | 40.0% |
| !! | AAGTACCTTTTGGAGACAAG+TGG | - | chr5.2:64039970-64039989 | MS.gene99087:intron | 40.0% |
| !!! | CTGCACTGGTTTTGTACAAT+GGG | - | chr5.2:64040714-64040733 | MS.gene99087:intron | 40.0% |
| !!! | TCTGCACTGGTTTTGTACAA+TGG | - | chr5.2:64040713-64040732 | MS.gene99087:intron | 40.0% |
| AAAGATGATAGGTCGCTACC+TGG | + | chr5.2:64040443-64040462 | None:intergenic | 45.0% | |
| ACAGAGGGGAGAAGAAAAGA+TGG | - | chr5.2:64041375-64041394 | MS.gene99087:intron | 45.0% | |
| ACAGGGGAGTTAATAAGGCT+TGG | - | chr5.2:64041569-64041588 | MS.gene99087:intron | 45.0% | |
| AGTTGAGGTAACACGCAATG+TGG | - | chr5.2:64040346-64040365 | MS.gene99087:intron | 45.0% | |
| ATCGAAATCCACAAGCCTGA+AGG | + | chr5.2:64040047-64040066 | None:intergenic | 45.0% | |
| ATGGTCAACAAGTACCTCCA+AGG | - | chr5.2:64041394-64041413 | MS.gene99087:intron | 45.0% | |
| CAACTCCACTTGTCTCCAAA+AGG | + | chr5.2:64039978-64039997 | None:intergenic | 45.0% | |
| CATAGGATAAGCAGCTGAAG+AGG | - | chr5.2:64039917-64039936 | MS.gene99087:intron | 45.0% | |
| CCTTGCACAACAGATTGGAA+AGG | - | chr5.2:64040948-64040967 | MS.gene99087:intron | 45.0% | |
| CCTTTCCAATCTGTTGTGCA+AGG | + | chr5.2:64040951-64040970 | None:intergenic | 45.0% | |
| CGAAAACTGCTCACTTTGTC+AGG | + | chr5.2:64040997-64041016 | None:intergenic | 45.0% | |
| CTAGCAGTAACTCCTTTCCA+AGG | + | chr5.2:64040009-64040028 | None:intergenic | 45.0% | |
| CTGCCAATGGAATGTTGCAA+TGG | - | chr5.2:64042406-64042425 | MS.gene99087:intron | 45.0% | |
| GAAGACCTTGCACAACAGAT+TGG | - | chr5.2:64040943-64040962 | MS.gene99087:intron | 45.0% | |
| GAGACAAGTGGAGTTGTTAG+TGG | - | chr5.2:64039982-64040001 | MS.gene99087:intron | 45.0% | |
| TCATAAACCTTGTCCCTTGG+AGG | + | chr5.2:64041411-64041430 | None:intergenic | 45.0% | |
| TGGTCAACAAGTACCTCCAA+GGG | - | chr5.2:64041395-64041414 | MS.gene99087:intron | 45.0% | |
| ! | ACAATGGGTTTATGCAGGAG+AGG | - | chr5.2:64040729-64040748 | MS.gene99087:intron | 45.0% |
| ! | GTTGTTAGTGGACCTTGGAA+AGG | - | chr5.2:64039994-64040013 | MS.gene99087:intron | 45.0% |
| ! | TAGTGCTGCACTTTTGCTCT+CGG | - | chr5.2:64040106-64040125 | MS.gene99087:intron | 45.0% |
| !! | AGAAATTAATAATTAAATAT+TGG | + | chr5.2:64040589-64040608 | None:intergenic | 5.0% |
| ACAAGTACCTCCAAGGGACA+AGG | - | chr5.2:64041401-64041420 | MS.gene99087:intron | 50.0% | |
| AGGACATCGCCGATCATGTA+AGG | - | chr5.2:64040372-64040391 | MS.gene99087:intron | 50.0% | |
| CCTTATTAACTCCCCTGTGC+GGG | + | chr5.2:64041567-64041586 | None:intergenic | 50.0% | |
| CTTATTAACTCCCCTGTGCG+GGG | + | chr5.2:64041566-64041585 | None:intergenic | 50.0% | |
| GGACATCGCCGATCATGTAA+GGG | - | chr5.2:64040373-64040392 | MS.gene99087:intron | 50.0% | |
| GGAGTTACTGCTAGCAGTGT+TGG | - | chr5.2:64040015-64040034 | MS.gene99087:intron | 50.0% | |
| GGTAACACGCAATGTGGATG+AGG | - | chr5.2:64040352-64040371 | MS.gene99087:intron | 50.0% | |
| ! | CAGTGTTGGAGTACTCCTTC+AGG | - | chr5.2:64040029-64040048 | MS.gene99087:intron | 50.0% |
| ! | GCCTTATTAACTCCCCTGTG+CGG | + | chr5.2:64041568-64041587 | None:intergenic | 50.0% |
| ! | GTGGAGTTGTTAGTGGACCT+TGG | - | chr5.2:64039989-64040008 | MS.gene99087:intron | 50.0% |
| CCCGCACAGGGGAGTTAATA+AGG | - | chr5.2:64041564-64041583 | MS.gene99087:intron | 55.0% | |
| GCAGCTGAAGAGGACCTGTT+TGG | - | chr5.2:64039927-64039946 | MS.gene99087:intron | 55.0% | |
| ! | GGAGTACTCCTTCAGGCTTG+TGG | - | chr5.2:64040036-64040055 | MS.gene99087:intron | 55.0% |
| ! | TGCTGCACTTTTGCTCTCGG+TGG | - | chr5.2:64040109-64040128 | MS.gene99087:intron | 55.0% |
| AAGCATCTCACCCCGCACAG+GGG | - | chr5.2:64041553-64041572 | MS.gene99087:intron | 60.0% | |
| CGGTGGCTTCACTCGTACTC+AGG | - | chr5.2:64040126-64040145 | MS.gene99087:intron | 60.0% | |
| ! | GAAGCATCTCACCCCGCACA+GGG | - | chr5.2:64041552-64041571 | MS.gene99087:intron | 60.0% |
| !! | AGAAGCATCTCACCCCGCAC+AGG | - | chr5.2:64041551-64041570 | MS.gene99087:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 64039828 | 64042448 | 64039828 | ID=MS.gene99087 |
| chr5.2 | mRNA | 64039828 | 64042448 | 64039828 | ID=MS.gene99087.t1;Parent=MS.gene99087 |
| chr5.2 | exon | 64042444 | 64042448 | 64042444 | ID=MS.gene99087.t1.exon1;Parent=MS.gene99087.t1 |
| chr5.2 | CDS | 64042444 | 64042448 | 64042444 | ID=cds.MS.gene99087.t1;Parent=MS.gene99087.t1 |
| chr5.2 | exon | 64042173 | 64042315 | 64042173 | ID=MS.gene99087.t1.exon2;Parent=MS.gene99087.t1 |
| chr5.2 | CDS | 64042173 | 64042315 | 64042173 | ID=cds.MS.gene99087.t1;Parent=MS.gene99087.t1 |
| chr5.2 | exon | 64041882 | 64042048 | 64041882 | ID=MS.gene99087.t1.exon3;Parent=MS.gene99087.t1 |
| chr5.2 | CDS | 64041882 | 64042048 | 64041882 | ID=cds.MS.gene99087.t1;Parent=MS.gene99087.t1 |
| chr5.2 | exon | 64041450 | 64041530 | 64041450 | ID=MS.gene99087.t1.exon4;Parent=MS.gene99087.t1 |
| chr5.2 | CDS | 64041450 | 64041530 | 64041450 | ID=cds.MS.gene99087.t1;Parent=MS.gene99087.t1 |
| chr5.2 | exon | 64041226 | 64041345 | 64041226 | ID=MS.gene99087.t1.exon5;Parent=MS.gene99087.t1 |
| chr5.2 | CDS | 64041226 | 64041345 | 64041226 | ID=cds.MS.gene99087.t1;Parent=MS.gene99087.t1 |
| chr5.2 | exon | 64040815 | 64040915 | 64040815 | ID=MS.gene99087.t1.exon6;Parent=MS.gene99087.t1 |
| chr5.2 | CDS | 64040815 | 64040915 | 64040815 | ID=cds.MS.gene99087.t1;Parent=MS.gene99087.t1 |
| chr5.2 | exon | 64039828 | 64039897 | 64039828 | ID=MS.gene99087.t1.exon7;Parent=MS.gene99087.t1 |
| chr5.2 | CDS | 64039828 | 64039897 | 64039828 | ID=cds.MS.gene99087.t1;Parent=MS.gene99087.t1 |
| Gene Sequence |
| Protein sequence |
