AlfalfaGEDB | MS.gene99922

M. sativa cultivar XinJiangDaYe / MS.gene99922

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99922.t1	XP_003605725.1	92	138	11	0	1	138	1	138	2.00E-51	211.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99922.t1	G7JSI0	92.0	138	11	0	1	138	1	138	1.4e-51	211.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050020	MS.gene99922	0.812201	4.78E-51	-1.69E-46
MS.gene050563	MS.gene99922	0.803499	3.39E-49	-1.69E-46
MS.gene050584	MS.gene99922	0.8685	6.23E-66	-1.69E-46
MS.gene050585	MS.gene99922	0.865509	5.61E-65	-1.69E-46
MS.gene050586	MS.gene99922	0.819544	1.10E-52	-1.69E-46
MS.gene050587	MS.gene99922	0.842493	2.50E-58	-1.69E-46
MS.gene050807	MS.gene99922	0.805059	1.60E-49	-1.69E-46
MS.gene05143	MS.gene99922	0.811543	6.64E-51	-1.69E-46
MS.gene051789	MS.gene99922	0.864211	1.43E-64	-1.69E-46
MS.gene052142	MS.gene99922	0.842834	2.03E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99922.t1	MTR_4g037560	92.029	138	11	0	1	138	1	138	2.26e-70	207
MS.gene99922.t1	MTR_4g037480	78.417	139	17	2	1	138	1	127	7.47e-63	188
MS.gene99922.t1	MTR_2g090185	54.331	127	47	4	1	127	1	116	7.11e-29	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99922.t1	AT2G20870	39.474	114	65	4	24	135	23	134	2.23e-13	63.2

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Find 48 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTACATTATCCAGGCAT+TGG	0.542229	4.2:-57219704	MS.gene99922:CDS
AACCCATTTATTGGTGGCAC+TGG	0.429609	4.2:-57219641	MS.gene99922:CDS
AACCCTAAATGTCCAATGCC+TGG	0.458993	4.2:+57219692	None:intergenic
AATCCTGGCAGTGGTGGTGG+AGG	0.494058	4.2:-57219497	MS.gene99922:CDS
ACAAATGTGTCATCGCCACC+AGG	0.593265	4.2:+57219545	None:intergenic
ACAACACAAGAAGCAATTGC+TGG	0.522717	4.2:-57219800	MS.gene99922:CDS
ACTCCTAATAACCCATTTAT+TGG	0.220565	4.2:-57219650	MS.gene99922:CDS
AGGATCTGGAGCAGGATCAT+CGG	0.527283	4.2:-57219582	MS.gene99922:CDS
ATCCAGGCATTGGACATTTA+GGG	0.308197	4.2:-57219694	MS.gene99922:CDS
ATTGGTGGCACTGGAGGATC+GGG	0.434220	4.2:-57219632	MS.gene99922:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTCCTAATAACCCATTTAT+TGG	-	chr4.2:57219676-57219695	MS.gene99922:CDS	30.0%
AAACTACATTATCCAGGCAT+TGG	-	chr4.2:57219622-57219641	MS.gene99922:CDS	35.0%
CCTAATAACCCATTTATTGG+TGG	-	chr4.2:57219679-57219698	MS.gene99922:CDS	35.0%
TTCTGTTCAAGCATGAACAT+GGG	-	chr4.2:57219599-57219618	MS.gene99922:CDS	35.0%
TTTCTGTTCAAGCATGAACA+TGG	-	chr4.2:57219598-57219617	MS.gene99922:CDS	35.0%
ACAACACAAGAAGCAATTGC+TGG	-	chr4.2:57219526-57219545	MS.gene99922:CDS	40.0%
CATGGGAAACTACATTATCC+AGG	-	chr4.2:57219616-57219635	MS.gene99922:CDS	40.0%
TCATGCTTGAACAGAAACTG+AGG	+	chr4.2:57219595-57219614	None:intergenic	40.0%
TTAGGAGTAAGTCCAAAGTG+TGG	+	chr4.2:57219664-57219683	None:intergenic	40.0%
TTGCTTCTTGTGTTGTGAGA+AGG	+	chr4.2:57219522-57219541	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	57219466	57219882	57219466	ID=MS.gene99922
chr4.2	mRNA	57219466	57219882	57219466	ID=MS.gene99922.t1;Parent=MS.gene99922
chr4.2	exon	57219466	57219882	57219466	ID=MS.gene99922.t1.exon1;Parent=MS.gene99922.t1
chr4.2	CDS	57219466	57219882	57219466	ID=cds.MS.gene99922.t1;Parent=MS.gene99922.t1

Gene Sequence

>MS.gene99922

ATGGTTCAAAGAGCTTACTCTTTCTTTGCACTTTTTCTCATTTTCAATATTCTCCTTCTCACAACACAAGAAGCAATTGCTGGTCGCAGCATTGCTAAGAACTCCGACAACGACGACAAGAAAGAGCCTCAGTTTCTGTTCAAGCATGAACATGGGAAACTACATTATCCAGGCATTGGACATTTAGGGTTTCCACCACACTTTGGACTTACTCCTAATAACCCATTTATTGGTGGCACTGGAGGATCGGGATCGGGTTCAGGATCAGGTTCGAGTTCAGGATCTGGAGCAGGATCATCGGGTCACAGTTATGTTCCTGGTGGCGATGACACATTTGTTCCAAACCCTGGCTTTGAGGTTCCAAATCCTGGCAGTGGTGGTGGAGGTGGTAGAGTTGCACAAACAGTTAATCCATGA

Protein sequence

>MS.gene99922.t1

MVQRAYSFFALFLIFNILLLTTQEAIAGRSIAKNSDNDDKKEPQFLFKHEHGKLHYPGIGHLGFPPHFGLTPNNPFIGGTGGSGSGSGSGSSSGSGAGSSGHSYVPGGDDTFVPNPGFEVPNPGSGGGGGRVAQTVNP